17-03-17 19:01:49.438 -07 000000610 INF: =================== Cycle #21 ===================
17-03-17 19:01:49.438 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 19:01:49.438 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-17 19:01:49.438 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:49.438 -07 000000561 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:01:49.448 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:01:49.448 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:49.448 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 19:01:49.448 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 19:01:49.448 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 19:01:49.558 -07 000000541 INF: FPGA: Recv YMVTO 154377 872
17-03-17 19:01:49.558 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 116 ms overall
17-03-17 19:01:49.558 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 19:01:49.558 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (0.00%).
17-03-17 19:01:49.558 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.720 mm/sec
17-03-17 19:01:51.478 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.990831,
17-03-17 19:01:51.648 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:01:51.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:01:52.558 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:52.558 -07 000000415 INF: FPGA: Recv YRDPOS 154381
17-03-17 19:01:52.568 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:52.568 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:52.578 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:01:52.578 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 4 counts (0.002 mm)
17-03-17 19:01:52.578 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3144 ms
17-03-17 19:01:52.588 -07 000000610 INF: =================== Cycle #21, Flow Cell Temp 60° ===================
17-03-17 19:01:52.588 -07 000000610 INF: =================== Cycle #21, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 19:01:52.828 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:01:52.828 -07 000000462 INF: FPGA: Recv TEC2EN 
17-03-17 19:01:52.838 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:52.838 -07 000000610 INF: =================== Cycle #21, Flow Cell Temp 60° ===================
17-03-17 19:01:52.838 -07 000000610 INF: =================== Cycle #21 ===================
17-03-17 19:01:52.838 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:01:52.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:01:52.868 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:01:52.868 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 19:01:52.868 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:01:53.168 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:01:53.188 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:01:53.188 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:01:53.238 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:01:53.258 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:01:53.258 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:01:53.358 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3) ===================
17-03-17 19:01:53.358 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:01:53.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:01:53.388 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:01:53.388 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:01:53.388 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:01:53.518 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:01:53.558 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:01:56.648 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:01:56.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:01:56.688 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:01:56.718 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:01:56.838 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.943091,
17-03-17 19:01:57.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:01:57.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:01:57.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:01:57.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:01:57.618 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:01:57.618 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3) ===================
17-03-17 19:01:57.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:01:57.778 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:01:57.778 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:01:57.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:01:57.938 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:01:57.938 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:01:57.938 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:01:58.068 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:01:58.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:01:58.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:01:58.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:01:58.558 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:01:58.558 -07 000000610 INF: =================== Cycle #21 ===================
17-03-17 19:01:59.778 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:01:59.778 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 19:01:59.778 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:01:59.798 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:01:59.798 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 19:01:59.798 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 19:01:59.928 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:01:59.948 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 19:01:59.948 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 19:01:59.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:02:00.018 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:02:00.018 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:02:00.118 -07 000000610 INF: =================== Cycle #21, Pumping Reagent CMS (4) ===================
17-03-17 19:02:00.118 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:02:00.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:02:00.148 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:02:00.148 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:02:00.148 -07 000000610 INF: =================== Cycle #21, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 19:02:00.278 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:02:00.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:02:01.648 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:02:01.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:02:01.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:02:01.788 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:02:02.198 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.952638,
17-03-17 19:02:02.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:02:02.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:02:02.238 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:02:02.238 -07 000000610 INF: =================== Cycle #21, Pumping Reagent CMS (4) ===================
17-03-17 19:02:02.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:02:02.398 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:02:02.398 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:02:02.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:02:02.558 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:02:02.558 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:02:02.558 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:02:02.688 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:02:02.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:02:03.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:02:03.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:02:03.178 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:02:03.178 -07 000000610 INF: =================== Cycle #21 ===================
17-03-17 19:02:04.398 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:02:04.398 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:02:04.398 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:02:04.418 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:02:04.418 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 19:02:04.418 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 19:02:04.568 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:02:04.588 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 19:02:04.588 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 19:02:04.638 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:02:04.658 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:02:04.658 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:02:04.758 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3) ===================
17-03-17 19:02:04.758 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:02:04.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:02:04.788 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:02:04.788 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:02:04.788 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:02:04.918 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:02:04.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:02:05.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:02:05.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:02:05.858 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:02:05.858 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3) ===================
17-03-17 19:02:05.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:02:06.018 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:02:06.018 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:02:06.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:02:06.178 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:02:06.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:02:06.178 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:02:06.308 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:02:06.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:02:06.648 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 4
17-03-17 19:02:06.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=4, R2=6, Total=10. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=225, R2=234, Total=459. Warn if over 250 bubbles per interval.
17-03-17 19:02:06.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:02:06.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:02:06.798 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:02:06.798 -07 000000610 INF: =================== Cycle #21 ===================
17-03-17 19:02:06.798 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:02:06.798 -07 000000012 INF: WaitCommand(10000) start
17-03-17 19:02:06.798 -07 000000608 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:02:07.558 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.979922,
17-03-17 19:02:08.018 -07 000000608 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:02:08.018 -07 000000608 INF: LanePump: Xmit /1?\r
17-03-17 19:02:08.048 -07 000000608 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:02:08.048 -07 000000608 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:02:08.178 -07 000000608 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:02:08.218 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:02:09.748 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-17 19:02:09.778 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:02:10.198 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-17 19:02:10.228 -07 000000608 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:02:10.228 -07 000000608 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:02:10.228 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:02:10.228 -07 000000608 INF: ===================  ===================
17-03-17 19:02:11.648 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 19:02:11.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=225, R2=236, Total=461. Warn if over 250 bubbles per interval.
17-03-17 19:02:12.918 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.989471,
17-03-17 19:02:16.648 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 19:02:16.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=225, R2=237, Total=462. Warn if over 250 bubbles per interval.
17-03-17 19:02:16.808 -07 000000012 INF: WaitCommand(10000) end
17-03-17 19:02:16.808 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3) ===================
17-03-17 19:02:16.808 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 19:02:16.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:02:16.838 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:02:16.838 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:02:16.838 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:02:16.968 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 19:02:17.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:02:18.278 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.99219,
17-03-17 19:02:21.648 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 10 R1 6
17-03-17 19:02:21.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=6, R2=10, Total=16. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=231, R2=247, Total=478. Warn if over 250 bubbles per interval.
17-03-17 19:02:23.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:02:23.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:02:23.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:02:23.618 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:02:23.638 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.997626,
17-03-17 19:02:24.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:02:24.068 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:02:24.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:02:24.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:02:24.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:02:24.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:02:24.968 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 19:02:24.968 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3) ===================
17-03-17 19:02:25.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:02:25.128 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:02:25.128 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:02:25.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:02:25.288 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:02:25.288 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:02:25.288 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:02:25.418 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:02:25.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:02:25.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:02:25.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:02:25.908 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:02:25.908 -07 000000610 INF: =================== Cycle #21 ===================
17-03-17 19:02:26.648 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 8 R1 4
17-03-17 19:02:26.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=4, R2=8, Total=12. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:02:27.128 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 19:02:27.128 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 19:02:27.128 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:02:27.148 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:02:27.148 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 19:02:27.148 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 19:02:27.358 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:02:27.378 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 19:02:27.378 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 19:02:27.428 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:02:27.448 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:02:27.448 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:02:27.548 -07 000000610 INF: =================== Cycle #21, Pumping Reagent IMT (1) ===================
17-03-17 19:02:27.548 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:02:27.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:02:27.588 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:02:27.588 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:02:27.588 -07 000000610 INF: =================== Cycle #21, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 19:02:27.718 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:02:27.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:02:28.998 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.014009,
17-03-17 19:02:29.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:02:29.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:02:29.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:02:29.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:02:29.678 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:02:29.678 -07 000000610 INF: =================== Cycle #21, Pumping Reagent IMT (1) ===================
17-03-17 19:02:29.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:02:29.838 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:02:29.838 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:02:29.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:02:29.998 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:02:29.998 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:02:29.998 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:02:30.128 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:02:30.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:02:30.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:02:30.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:02:30.618 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:02:30.618 -07 000000610 INF: =================== Cycle #21 ===================
17-03-17 19:02:31.648 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:02:31.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:02:31.838 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:02:31.838 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:02:31.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:02:31.858 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:02:31.858 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 19:02:31.858 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:02:32.088 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:02:32.108 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 19:02:32.108 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 19:02:32.158 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:02:32.178 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:02:32.178 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:02:32.278 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3) ===================
17-03-17 19:02:32.278 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:02:32.278 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:02:32.308 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:02:32.308 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:02:32.308 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:02:32.438 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:02:32.478 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:02:33.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:02:33.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:02:33.378 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:02:33.378 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3) ===================
17-03-17 19:02:33.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:02:33.538 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:02:33.538 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:02:33.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:02:33.698 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:02:33.698 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:02:33.698 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:02:33.828 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:02:33.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:02:34.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:02:34.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:02:34.318 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:02:34.318 -07 000000610 INF: =================== Cycle #21 ===================
17-03-17 19:02:34.318 -07 000000610 INF: =================== Cycle #21, Flow Cell Temp 65° ===================
17-03-17 19:02:34.318 -07 000000610 INF: =================== Cycle #21, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 19:02:34.318 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 19:02:34.318 -07 000000486 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:02:34.328 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:02:34.328 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:02:34.328 -07 000000433 INF: FPGA: Recv TEC2EN 
17-03-17 19:02:34.338 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:02:34.338 -07 000000610 INF: =================== Cycle #21, Flow Cell Temp 65° ===================
17-03-17 19:02:34.338 -07 000000610 INF: =================== Cycle #21 ===================
17-03-17 19:02:34.338 -07 000000610 INF: WaitCommand(30000) start
17-03-17 19:02:34.358 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.997626,
17-03-17 19:02:36.648 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:02:36.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:02:39.718 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.031682,
17-03-17 19:02:41.648 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:02:41.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:02:45.078 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.999021,
17-03-17 19:02:46.648 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:02:46.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:02:50.438 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.012614,
17-03-17 19:02:51.648 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:02:51.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:02:55.798 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.996267,
17-03-17 19:02:56.648 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:02:56.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:03:01.158 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.005817,
17-03-17 19:03:01.648 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:03:01.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:03:04.348 -07 000000610 INF: WaitCommand(30000) end
17-03-17 19:03:04.348 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3) ===================
17-03-17 19:03:04.348 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 19:03:04.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:03:04.478 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:03:04.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:03:04.478 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:03:04.608 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 19:03:04.648 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:03:05.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:03:05.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:03:05.218 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 19:03:05.218 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3) ===================
17-03-17 19:03:05.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:03:05.378 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:03:05.378 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:03:05.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:03:05.538 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:03:05.538 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:03:05.538 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:03:05.668 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:03:05.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:03:06.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:03:06.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:03:06.158 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:03:06.158 -07 000000610 INF: =================== Cycle #21 ===================
17-03-17 19:03:06.158 -07 000000424 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:03:06.158 -07 000000424 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:03:06.158 -07 000000502 INF: WaitCommand(30000) start
17-03-17 19:03:06.518 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.008536,
17-03-17 19:03:06.648 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:03:06.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:03:07.378 -07 000000424 INF: AsyncDelayTimer waited 1214ms
17-03-17 19:03:07.378 -07 000000424 INF: LanePump: Xmit /1?\r
17-03-17 19:03:07.408 -07 000000424 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:03:07.408 -07 000000424 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:03:07.538 -07 000000424 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:03:07.578 -07 000000424 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:03:09.918 -07 000000424 INF: LanePump: Xmit /1Q\r
17-03-17 19:03:09.948 -07 000000424 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:03:10.368 -07 000000424 INF: LanePump: Xmit /1Q\r
17-03-17 19:03:10.398 -07 000000424 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:03:10.398 -07 000000424 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 19:03:10.398 -07 000000424 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:03:10.398 -07 000000424 INF: ===================  ===================
17-03-17 19:03:11.648 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:03:11.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:03:11.878 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.014009,
17-03-17 19:03:16.648 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:03:16.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:03:17.238 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.986717,
17-03-17 19:03:21.648 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:03:21.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:03:22.598 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.999021,
17-03-17 19:03:26.648 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:03:26.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:03:27.958 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.012614,
17-03-17 19:03:31.648 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:03:31.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:03:33.318 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.000345,
17-03-17 19:03:36.168 -07 000000502 INF: WaitCommand(30000) end
17-03-17 19:03:36.168 -07 000000610 INF: =================== Cycle #21, Flow Cell Temp 22° ===================
17-03-17 19:03:36.168 -07 000000610 INF: =================== Cycle #21, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 19:03:36.168 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 19:03:36.178 -07 000000424 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:03:36.178 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:03:36.178 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:03:36.178 -07 000000431 INF: FPGA: Recv TEC2EN 
17-03-17 19:03:36.188 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:03:36.188 -07 000000610 INF: =================== Cycle #21, Flow Cell Temp 22° ===================
17-03-17 19:03:36.188 -07 000000610 INF: =================== Cycle #21 ===================
17-03-17 19:03:36.188 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3) ===================
17-03-17 19:03:36.188 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:03:36.188 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:03:36.218 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:03:36.218 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:03:36.218 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:03:36.348 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:03:36.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:03:36.648 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:03:36.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:03:38.678 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.974486,
17-03-17 19:03:39.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:03:39.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:03:39.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:03:39.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:03:40.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:03:40.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:03:40.448 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:03:40.448 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3) ===================
17-03-17 19:03:40.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:03:40.608 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:03:40.608 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:03:40.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:03:40.768 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:03:40.768 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:03:40.768 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:03:40.898 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:03:40.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:03:41.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:03:41.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:03:41.388 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:03:41.388 -07 000000610 INF: =================== Cycle #21 ===================
17-03-17 19:03:41.648 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:03:41.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:03:42.608 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:03:42.608 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 19:03:42.608 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:03:42.628 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:03:42.628 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 19:03:42.628 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 19:03:42.778 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:03:42.798 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:03:42.798 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:03:42.848 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:03:42.868 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:03:42.868 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:03:42.968 -07 000000610 INF: =================== Cycle #21, Pumping Reagent USM (2) ===================
17-03-17 19:03:42.968 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:03:42.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:03:42.998 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:03:42.998 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:03:42.998 -07 000000610 INF: =================== Cycle #21, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 19:03:43.128 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:03:43.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:03:44.038 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.993549,
17-03-17 19:03:44.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:03:44.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:03:45.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:03:45.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:03:45.088 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 19:03:45.088 -07 000000610 INF: =================== Cycle #21, Pumping Reagent USM (2) ===================
17-03-17 19:03:45.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:03:45.248 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:03:45.248 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:03:45.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:03:45.408 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:03:45.408 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:03:45.408 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:03:45.538 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:03:45.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:03:45.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:03:46.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:03:46.028 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:03:46.028 -07 000000610 INF: =================== Cycle #21 ===================
17-03-17 19:03:46.648 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:03:46.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:03:47.248 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:03:47.248 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:03:47.248 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:03:47.268 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:03:47.268 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 19:03:47.268 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:03:47.418 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:03:47.438 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:03:47.438 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:03:47.488 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:03:47.508 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:03:47.508 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:03:47.608 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3) ===================
17-03-17 19:03:47.608 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:03:47.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:03:47.638 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:03:47.638 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:03:47.638 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:03:47.768 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:03:47.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:03:48.678 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:03:48.708 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:03:48.708 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 19:03:48.708 -07 000000610 INF: =================== Cycle #21, Pumping Reagent PR2 (3) ===================
17-03-17 19:03:48.838 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:03:48.868 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:03:48.868 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:03:48.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:03:49.028 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:03:49.028 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:03:49.028 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:03:49.158 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:03:49.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:03:49.398 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.999021,
17-03-17 19:03:49.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:03:49.648 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:03:49.648 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:03:49.648 -07 000000610 INF: =================== Cycle #21 ===================
17-03-17 19:03:49.648 -07 000000486 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:03:49.648 -07 000000415 INF: WaitCommand(10000) start
17-03-17 19:03:49.648 -07 000000486 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:03:50.868 -07 000000486 INF: AsyncDelayTimer waited 1215ms
17-03-17 19:03:50.868 -07 000000486 INF: LanePump: Xmit /1?\r
17-03-17 19:03:50.898 -07 000000486 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:03:50.898 -07 000000486 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:03:51.028 -07 000000486 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:03:51.068 -07 000000486 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:03:51.648 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:03:51.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:03:52.598 -07 000000486 INF: LanePump: Xmit /1Q\r
17-03-17 19:03:52.628 -07 000000486 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:03:53.048 -07 000000486 INF: LanePump: Xmit /1Q\r
17-03-17 19:03:53.078 -07 000000486 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:03:53.078 -07 000000486 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:03:53.078 -07 000000486 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:03:53.078 -07 000000486 INF: ===================  ===================
17-03-17 19:03:54.758 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.996267,
17-03-17 19:03:56.648 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:03:56.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:03:59.658 -07 000000415 INF: WaitCommand(10000) end
17-03-17 19:03:59.658 -07 000000610 INF: =================== Cycle #21, Imaging ===================
17-03-17 19:03:59.658 -07 000000610 INF: Imaging Cycle 21: ScanTilesCommand Cycle 21 time start.
17-03-17 19:03:59.658 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 19:03:59.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:03:59.688 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:03:59.688 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 19:03:59.688 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 19:03:59.988 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:04:00.008 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:04:00.008 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:04:00.058 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:04:00.078 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:04:00.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:00.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:00.078 -07 000000438 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 19:04:00.078 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:00.078 -07 000000438 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 19:04:00.078 -07 000000502 INF: FPGA: Recv EXLED1ON 
17-03-17 19:04:00.088 -07 000000438 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:04:00.088 -07 000000438 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 19:04:00.088 -07 000000424 INF: FPGA: Recv EXLED1ADCR 23181
17-03-17 19:04:00.098 -07 000000438 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:00.098 -07 000000438 INF: RedLED: Using Red data: Photodiode ADC 23181 --> 7.4 mW (old method), or 205.4 mW (new method). Difference = 198.0 mW
17-03-17 19:04:00.098 -07 000000438 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 19:04:00.098 -07 000000424 INF: FPGA: Recv EXLED1OFF 
17-03-17 19:04:00.108 -07 000000438 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:00.108 -07 000000438 INF: RedLED: LED was on for 20 ms
17-03-17 19:04:00.108 -07 000000438 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-17 19:04:00.108 -07 000000438 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 19:04:00.108 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:00.118 -07 000000438 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 19:04:00.118 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.033041,
17-03-17 19:04:00.118 -07 000000593 INF: FPGA: Recv EXLED2ON 
17-03-17 19:04:00.128 -07 000000438 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:04:00.128 -07 000000438 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:04:00.128 -07 000000424 INF: FPGA: Recv EXLED1ADCR 2097
17-03-17 19:04:00.138 -07 000000438 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:00.138 -07 000000438 INF: GreenLED: Using Green data: Photodiode ADC 2097 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.3 mW
17-03-17 19:04:00.158 -07 000000438 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 19:04:00.158 -07 000000551 INF: FPGA: Recv EXLED2OFF 
17-03-17 19:04:00.168 -07 000000438 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:04:00.168 -07 000000438 INF: GreenLED: LED was on for 40 ms
17-03-17 19:04:00.168 -07 000000438 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 56 ms.
17-03-17 19:04:00.188 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:04:00.188 -07 000000486 INF: FPGA: Recv EMCUR 
17-03-17 19:04:00.198 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:04:00.198 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 19:04:00.698 -07 000000502 INF: FPGA: Recv EMOUT
17-03-17 19:04:00.698 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 495 ms to get response, and 504 ms overall
17-03-17 19:04:00.698 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 19:04:00.708 -07 000000438 INF: FPGA: Recv EMCUR 
17-03-17 19:04:00.708 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 19:04:00.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:04:00.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38134765625, Z-Position -0.127524893822049. ------
17-03-17 19:04:00.708 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17937 mm
17-03-17 19:04:00.708 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:04:00.708 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:04:00.718 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:04:00.718 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:04:00.718 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 39184, sync = True, waitForSettling = False)
17-03-17 19:04:00.718 -07 000000415 INF: Z Motor: Moving to -0.179373 mm, started at -0.127525 mm, distance = -51.85 um
17-03-17 19:04:00.718 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:04:00.718 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:04:00.718 -07 000000431 INF: Y Motor: Moving to 59.9126 mm, started at 75.3813 mm, delta = -15.4687 mm
17-03-17 19:04:00.728 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:00.728 -07 000000438 INF: FPGA: Recv YRDPOS 154382
17-03-17 19:04:00.738 -07 000000415 INF: FPGA: Xmit ZDACW 39184\n [Z Motor]
17-03-17 19:04:00.738 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:04:00.738 -07 000000431 INF: Y Motor: Encoder = 154382 = motor step 120610.9 = 75.3818 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:00.738 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:04:00.738 -07 000000431 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 19:04:00.738 -07 000000431 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:04:00.748 -07 000000415 INF: FPGA: 'ZDACW 39184' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:04:00.748 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:00.748 -07 000000462 INF: FPGA: Recv ZDACR 39184
17-03-17 19:04:00.758 -07 000000431 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:04:00.758 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:00.758 -07 000000415 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:04:00.918 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:04:00.918 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:04:01.648 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:04:01.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:04:02.438 -07 000000486 INF: FPGA: Recv YMVTO 122703 24776
17-03-17 19:04:02.438 -07 000000431 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1702 ms overall
17-03-17 19:04:02.438 -07 000000431 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:04:02.438 -07 000000431 INF: Y Motor: To move from 75.382 to 59.913 (-15.469 mm) should take 24751 steps, but required 24776 steps (15.485 mm). Slippage = 0.016 mm (0.00%).
17-03-17 19:04:02.438 -07 000000431 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1702 ms, distance = 15.469 mm, average velocity = 9.089 mm/sec
17-03-17 19:04:05.288 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:05.288 -07 000000486 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:04:05.298 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:05.298 -07 000000431 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:05.318 -07 000000431 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:04:05.318 -07 000000431 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 19:04:05.318 -07 000000431 INF: Y Motor: Moved to 59.9116 after 4597 ms
17-03-17 19:04:05.318 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179373 mm (DAC = 39184)
17-03-17 19:04:05.318 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:05.318 -07 000000593 INF: FPGA: Recv ZSGSRD 37217
17-03-17 19:04:05.328 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:04:05.328 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:05.328 -07 000000551 INF: FPGA: Recv ZSGSRD 37207
17-03-17 19:04:05.338 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:05.338 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:05.338 -07 000000626 INF: FPGA: Recv ZSGSRD 37214
17-03-17 19:04:05.348 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:05.348 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:05.348 -07 000000569 INF: FPGA: Recv ZSGSRD 37208
17-03-17 19:04:05.358 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:05.358 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:05.358 -07 000000431 INF: FPGA: Recv ZSGSRD 37211
17-03-17 19:04:05.368 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:05.368 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:05.368 -07 000000551 INF: FPGA: Recv ZSGSRD 37219
17-03-17 19:04:05.378 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:05.378 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:05.378 -07 000000438 INF: FPGA: Recv ZSGSRD 37209
17-03-17 19:04:05.388 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:05.388 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:05.388 -07 000000569 INF: FPGA: Recv ZSGSRD 37213
17-03-17 19:04:05.398 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:05.398 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:05.398 -07 000000626 INF: FPGA: Recv ZSGSRD 37211
17-03-17 19:04:05.408 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:05.408 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:05.408 -07 000000551 INF: FPGA: Recv ZSGSRD 37209
17-03-17 19:04:05.418 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:05.418 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:05.418 -07 000000438 INF: FPGA: Recv ZPIEZORD 33560
17-03-17 19:04:05.428 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:05.428 -07 000000424 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.979 V. Piezo Error = -8.1 V.
17-03-17 19:04:05.428 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.4 um, Read 10 ADC samples: Avg = 37212 (-178.5 uncal um), Error = 0.9 uncal um, Median = 37211 (-178.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37207 (-178.5 uncal um), Max = 37219 (-178.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:04:05.428 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37212, posNoise = 7, negNoise = 5
17-03-17 19:04:05.428 -07 000000424 INF: Z Motor: After move to -0.179373, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:05.428 -07 000000424 INF: Z Motor: Settle wait time = 4603 ms, measure time = 104 ms (allowed 150 ms), total time = 4707 ms
17-03-17 19:04:05.428 -07 000000424 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:04:05.478 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4761 ms
17-03-17 19:04:05.478 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:04:05.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:05.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:05.478 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:05.478 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:05.478 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:04:05.478 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:05.478 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:04:05.478 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:04:05.508 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.0344,
17-03-17 19:04:05.508 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 19:04:05.508 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:04:05.508 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:04:05.508 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:04:05.518 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:04:05.518 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 40 ms.
17-03-17 19:04:05.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:04:05.588 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:04:05.788 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:04:05.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:04:05.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:04:05.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1170968792, 0x0, 559484976) start.
17-03-17 19:04:05.828 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:04:05.828 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 19:04:05.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 303 ms overall
17-03-17 19:04:05.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1170968792, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:04:05.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:05.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:04:05.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:04:05.928 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:04:05.928 -07 000000438 INF: Image SNR check: start
17-03-17 19:04:05.928 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:04:05.938 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:04:05.938 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:04:05.938 -07 000000438 INF: Image SNR check: pass  [peak (Max-Min)=69.75]
17-03-17 19:04:05.938 -07 000000438 INF: Autofocus start
17-03-17 19:04:05.938 -07 000000438 INF: MeasureProfile start
17-03-17 19:04:05.948 -07 000000438 INF: MeasureProfile done
17-03-17 19:04:05.958 -07 000000438 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:04:05.958 -07 000000438 INF: Autofocus finished
17-03-17 19:04:06.138 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:04:06.138 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:04:06.138 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.179381134230344. ----------
17-03-17 19:04:06.148 -07 000000610 INF: Cycle	21	Tile	1	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:04:06.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37717, sync = True, waitForSettling = True)
17-03-17 19:04:06.148 -07 000000610 INF: Z Motor: Moving to -0.172657 mm, started at -0.179381 mm, distance = 6.72 um
17-03-17 19:04:06.148 -07 000000610 INF: FPGA: Xmit ZDACW 37717\n [Z Motor]
17-03-17 19:04:06.148 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:04:06.158 -07 000000610 INF: FPGA: 'ZDACW 37717' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:04:06.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:06.158 -07 000000462 INF: FPGA: Recv ZDACR 37717
17-03-17 19:04:06.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:06.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:04:06.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:06.318 -07 000000569 INF: FPGA: Recv ZSGSRD 36166
17-03-17 19:04:06.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:06.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:06.328 -07 000000593 INF: FPGA: Recv ZSGSRD 36166
17-03-17 19:04:06.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:06.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:06.338 -07 000000438 INF: FPGA: Recv ZSGSRD 36167
17-03-17 19:04:06.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:06.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:06.348 -07 000000551 INF: FPGA: Recv ZSGSRD 36171
17-03-17 19:04:06.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:06.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:06.358 -07 000000424 INF: FPGA: Recv ZSGSRD 36161
17-03-17 19:04:06.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:06.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:06.368 -07 000000462 INF: FPGA: Recv ZSGSRD 36162
17-03-17 19:04:06.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:06.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:06.378 -07 000000438 INF: FPGA: Recv ZSGSRD 36171
17-03-17 19:04:06.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:06.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:06.388 -07 000000551 INF: FPGA: Recv ZSGSRD 36172
17-03-17 19:04:06.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:06.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:06.398 -07 000000424 INF: FPGA: Recv ZSGSRD 36166
17-03-17 19:04:06.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:06.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:06.408 -07 000000626 INF: FPGA: Recv ZSGSRD 36164
17-03-17 19:04:06.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:06.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:06.418 -07 000000438 INF: FPGA: Recv ZPIEZORD 32190
17-03-17 19:04:06.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:06.428 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.755 V. Piezo Error = -8.8 V.
17-03-17 19:04:06.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36167 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36166 (-171.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36161 (-171.7 uncal um), Max = 36172 (-171.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:04:06.428 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36167, posNoise = 5, negNoise = 6
17-03-17 19:04:06.428 -07 000000610 INF: Z Motor: After move to -0.172657, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:06.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:04:06.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:06.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:06.428 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:06.428 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:06.428 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:04:06.428 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:04:06.428 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:06.428 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:04:06.428 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:04:06.428 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:04:06.428 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:04:06.428 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:04:06.438 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:04:06.438 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:04:06.448 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:04:06.448 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:04:06.458 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 19:04:06.458 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:04:06.458 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:04:06.458 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:04:06.468 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 19:04:06.468 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 19:04:06.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37893 150\n [Camera]
17-03-17 19:04:06.648 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:04:06.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:04:06.678 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:04:07.068 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:04:07.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:04:07.068 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:07.068 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:07.068 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:04:07.078 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:04:07.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:04:07.078 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:07.078 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:07.078 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:04:07.268 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37893 783
17-03-17 19:04:07.418 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:04:07.468 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:04:07.468 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:04:07.468 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:07.478 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 19:04:07.478 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:04:07.478 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:07.478 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:04:07.478 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:04:07.478 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:04:07.488 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:04:07.608 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:04:07.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:04:07.608 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:07.718 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:04:07.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:04:07.718 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:07.718 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 19:04:07.718 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:07.728 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:07.728 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:04:07.798 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:04:07.798 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:04:07.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37893 150' command took 2 ms to send, 1314 ms to get response, and 1325 ms overall
17-03-17 19:04:07.798 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.173031
17-03-17 19:04:07.798 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17303 mm
17-03-17 19:04:07.798 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:04:07.798 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:04:07.798 -07 000000431 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 19:04:07.798 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:07.798 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37799, sync = True, waitForSettling = False)
17-03-17 19:04:07.798 -07 000000569 INF: Z Motor: Moving to -0.173033 mm, started at -0.172668 mm, distance = -0.36 um
17-03-17 19:04:07.808 -07 000000569 INF: FPGA: Xmit ZDACW 37799\n [Z Motor]
17-03-17 19:04:07.808 -07 000000551 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:04:07.808 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 19:04:07.808 -07 000000431 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:07.808 -07 000000431 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:04:07.808 -07 000000431 INF: Y Motor: Moving 1330 steps2
17-03-17 19:04:07.808 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:04:07.818 -07 000000569 INF: FPGA: 'ZDACW 37799' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:04:07.818 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:04:07.828 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:07.828 -07 000000415 INF: FPGA: Recv ZDACR 37799
17-03-17 19:04:07.838 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:04:07.838 -07 000000569 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 19:04:08.118 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 19:04:08.118 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:04:08.118 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:08.118 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:04:08.118 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:04:08.118 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:08.118 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:04:08.128 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:04:08.128 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 19:04:08.128 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:04:08.188 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 19:04:08.188 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 19:04:08.218 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:08.218 -07 000000551 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:04:08.228 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:04:08.228 -07 000000431 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:08.228 -07 000000431 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:04:08.228 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.831 mm, average velocity = 2.164 mm/sec
17-03-17 19:04:09.178 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:09.178 -07 000000438 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:04:09.188 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.188 -07 000000431 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:09.208 -07 000000431 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:04:09.208 -07 000000431 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:04:09.208 -07 000000431 INF: Y Motor: Moved to 60.7339 after 1402 ms (table move)
17-03-17 19:04:09.208 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173033 mm (DAC = 37799)
17-03-17 19:04:09.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.208 -07 000000431 INF: FPGA: Recv ZSGSRD 36230
17-03-17 19:04:09.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:04:09.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.218 -07 000000569 INF: FPGA: Recv ZSGSRD 36223
17-03-17 19:04:09.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.228 -07 000000569 INF: FPGA: Recv ZSGSRD 36223
17-03-17 19:04:09.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.238 -07 000000431 INF: FPGA: Recv ZSGSRD 36221
17-03-17 19:04:09.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.258 -07 000000462 INF: FPGA: Recv ZSGSRD 36223
17-03-17 19:04:09.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 19:04:09.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.258 -07 000000502 INF: FPGA: Recv ZSGSRD 36225
17-03-17 19:04:09.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:04:09.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.268 -07 000000569 INF: FPGA: Recv ZSGSRD 36229
17-03-17 19:04:09.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.278 -07 000000502 INF: FPGA: Recv ZSGSRD 36227
17-03-17 19:04:09.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.288 -07 000000626 INF: FPGA: Recv ZSGSRD 36226
17-03-17 19:04:09.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.298 -07 000000424 INF: FPGA: Recv ZSGSRD 36227
17-03-17 19:04:09.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:09.308 -07 000000438 INF: FPGA: Recv ZPIEZORD 32285
17-03-17 19:04:09.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.318 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.768 V. Piezo Error = -8.7 V.
17-03-17 19:04:09.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36225 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36226 (-172.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36221 (-172.1 uncal um), Max = 36230 (-172.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:04:09.318 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36225, posNoise = 5, negNoise = 4
17-03-17 19:04:09.318 -07 000000610 INF: Z Motor: After move to -0.173033, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:09.318 -07 000000610 INF: Z Motor: Settle wait time = 1404 ms, measure time = 107 ms (allowed 150 ms), total time = 1511 ms
17-03-17 19:04:09.318 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:04:09.368 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1563 ms
17-03-17 19:04:09.368 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:04:09.368 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.173040436846426. ----------
17-03-17 19:04:09.368 -07 000000610 INF: Cycle	21	Tile	2	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:04:09.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37622, sync = True, waitForSettling = True)
17-03-17 19:04:09.368 -07 000000610 INF: Z Motor: Moving to -0.172222 mm, started at -0.173040 mm, distance = 0.82 um
17-03-17 19:04:09.368 -07 000000610 INF: FPGA: Xmit ZDACW 37622\n [Z Motor]
17-03-17 19:04:09.368 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:04:09.378 -07 000000610 INF: FPGA: 'ZDACW 37622' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:04:09.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:09.378 -07 000000502 INF: FPGA: Recv ZDACR 37622
17-03-17 19:04:09.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:04:09.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.538 -07 000000438 INF: FPGA: Recv ZSGSRD 36100
17-03-17 19:04:09.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:09.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.548 -07 000000502 INF: FPGA: Recv ZSGSRD 36098
17-03-17 19:04:09.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.558 -07 000000626 INF: FPGA: Recv ZSGSRD 36098
17-03-17 19:04:09.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.568 -07 000000502 INF: FPGA: Recv ZSGSRD 36101
17-03-17 19:04:09.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.578 -07 000000626 INF: FPGA: Recv ZSGSRD 36106
17-03-17 19:04:09.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.588 -07 000000424 INF: FPGA: Recv ZSGSRD 36099
17-03-17 19:04:09.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.598 -07 000000415 INF: FPGA: Recv ZSGSRD 36103
17-03-17 19:04:09.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.608 -07 000000431 INF: FPGA: Recv ZSGSRD 36098
17-03-17 19:04:09.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.618 -07 000000569 INF: FPGA: Recv ZSGSRD 36095
17-03-17 19:04:09.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:09.628 -07 000000462 INF: FPGA: Recv ZSGSRD 36103
17-03-17 19:04:09.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:09.638 -07 000000502 INF: FPGA: Recv ZPIEZORD 32135
17-03-17 19:04:09.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:09.648 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.741 V. Piezo Error = -8.8 V.
17-03-17 19:04:09.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36100 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36100 (-171.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36095 (-171.3 uncal um), Max = 36106 (-171.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:04:09.648 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36100, posNoise = 6, negNoise = 5
17-03-17 19:04:09.648 -07 000000610 INF: Z Motor: After move to -0.172222, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:09.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:04:09.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:09.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:09.648 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:09.648 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:09.648 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:04:09.648 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:09.648 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:04:09.648 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:04:09.648 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:04:09.648 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:04:09.648 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:04:09.648 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:04:09.648 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:04:09.648 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:04:09.658 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:04:09.658 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:04:09.668 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:04:09.668 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:04:09.668 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:04:09.668 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:04:09.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37799 150\n [Camera]
17-03-17 19:04:09.868 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:04:10.268 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:04:10.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:04:10.268 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:10.268 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:04:10.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:04:10.278 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:10.278 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:10.278 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1081577064, 0x0, 391868352) start.
17-03-17 19:04:10.278 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:10.278 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1116999328, 0x0, 418435064) start.
17-03-17 19:04:10.458 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37799 783
17-03-17 19:04:10.608 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:04:10.668 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1081577064, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:04:10.668 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:04:10.668 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:10.678 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:04:10.678 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:04:10.678 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1116999328, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:04:10.678 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:04:10.678 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:10.678 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:04:10.688 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:04:10.808 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1125
17-03-17 19:04:10.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1125
17-03-17 19:04:10.808 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:10.918 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1125
17-03-17 19:04:10.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1125
17-03-17 19:04:10.918 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:10.928 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:10.928 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-17 19:04:10.928 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.033041,
17-03-17 19:04:10.928 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:10.928 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:04:10.998 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:04:10.998 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:04:10.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37799 150' command took 2 ms to send, 1312 ms to get response, and 1323 ms overall
17-03-17 19:04:10.998 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.172782
17-03-17 19:04:10.998 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17278 mm
17-03-17 19:04:10.998 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:04:10.998 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:04:10.998 -07 000000438 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 19:04:10.998 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:10.998 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 37744, sync = True, waitForSettling = False)
17-03-17 19:04:10.998 -07 000000415 INF: Z Motor: Moving to -0.172781 mm, started at -0.172237 mm, distance = -0.54 um
17-03-17 19:04:10.998 -07 000000593 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:04:11.008 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:04:11.008 -07 000000438 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:11.008 -07 000000438 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:04:11.008 -07 000000438 INF: Y Motor: Moving 1342 steps-19
17-03-17 19:04:11.008 -07 000000415 INF: FPGA: Xmit ZDACW 37744\n [Z Motor]
17-03-17 19:04:11.008 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:04:11.018 -07 000000415 INF: FPGA: 'ZDACW 37744' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:04:11.018 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:04:11.028 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:11.028 -07 000000431 INF: FPGA: Recv ZDACR 37744
17-03-17 19:04:11.038 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:04:11.038 -07 000000415 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 19:04:11.318 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:04:11.318 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:04:11.318 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:11.318 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:04:11.318 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 19:04:11.318 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:04:11.318 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:04:11.318 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:11.328 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:04:11.328 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:04:11.388 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 19:04:11.388 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:04:11.428 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:11.428 -07 000000462 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:04:11.438 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:11.438 -07 000000438 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:11.438 -07 000000438 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:04:11.438 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.162 mm/sec
17-03-17 19:04:11.648 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:04:11.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:04:12.388 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:12.388 -07 000000462 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:04:12.398 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:12.398 -07 000000438 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:12.418 -07 000000438 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:04:12.418 -07 000000438 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:04:12.418 -07 000000438 INF: Y Motor: Moved to 61.5645 after 1414 ms (table move)
17-03-17 19:04:12.418 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172781 mm (DAC = 37744)
17-03-17 19:04:12.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.418 -07 000000551 INF: FPGA: Recv ZSGSRD 36183
17-03-17 19:04:12.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:04:12.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.428 -07 000000431 INF: FPGA: Recv ZSGSRD 36178
17-03-17 19:04:12.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.438 -07 000000593 INF: FPGA: Recv ZSGSRD 36182
17-03-17 19:04:12.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.448 -07 000000593 INF: FPGA: Recv ZSGSRD 36186
17-03-17 19:04:12.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.458 -07 000000593 INF: FPGA: Recv ZSGSRD 36187
17-03-17 19:04:12.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.468 -07 000000593 INF: FPGA: Recv ZSGSRD 36194
17-03-17 19:04:12.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.478 -07 000000593 INF: FPGA: Recv ZSGSRD 36191
17-03-17 19:04:12.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.488 -07 000000551 INF: FPGA: Recv ZSGSRD 36187
17-03-17 19:04:12.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.498 -07 000000415 INF: FPGA: Recv ZSGSRD 36183
17-03-17 19:04:12.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.508 -07 000000415 INF: FPGA: Recv ZSGSRD 36184
17-03-17 19:04:12.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:12.518 -07 000000551 INF: FPGA: Recv ZPIEZORD 32235
17-03-17 19:04:12.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.528 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.759 V. Piezo Error = -8.7 V.
17-03-17 19:04:12.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36186 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36185 (-171.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36178 (-171.9 uncal um), Max = 36194 (-172.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:04:12.528 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36186, posNoise = 8, negNoise = 8
17-03-17 19:04:12.528 -07 000000610 INF: Z Motor: After move to -0.172781, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:12.528 -07 000000610 INF: Z Motor: Settle wait time = 1416 ms, measure time = 107 ms (allowed 150 ms), total time = 1523 ms
17-03-17 19:04:12.528 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:04:12.578 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 19:04:12.578 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:04:12.578 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.172789892572897. ----------
17-03-17 19:04:12.578 -07 000000610 INF: Cycle	21	Tile	3	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:04:12.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37568, sync = True, waitForSettling = True)
17-03-17 19:04:12.578 -07 000000610 INF: Z Motor: Moving to -0.171975 mm, started at -0.172790 mm, distance = 0.81 um
17-03-17 19:04:12.578 -07 000000610 INF: FPGA: Xmit ZDACW 37568\n [Z Motor]
17-03-17 19:04:12.578 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:04:12.588 -07 000000610 INF: FPGA: 'ZDACW 37568' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:04:12.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:12.588 -07 000000502 INF: FPGA: Recv ZDACR 37568
17-03-17 19:04:12.598 -07 000000610 INF: FPGA: 'ZDACR' command took 5 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:04:12.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.748 -07 000000502 INF: FPGA: Recv ZSGSRD 36059
17-03-17 19:04:12.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:12.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.758 -07 000000438 INF: FPGA: Recv ZSGSRD 36058
17-03-17 19:04:12.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.768 -07 000000424 INF: FPGA: Recv ZSGSRD 36066
17-03-17 19:04:12.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.778 -07 000000502 INF: FPGA: Recv ZSGSRD 36061
17-03-17 19:04:12.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.788 -07 000000569 INF: FPGA: Recv ZSGSRD 36062
17-03-17 19:04:12.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.798 -07 000000551 INF: FPGA: Recv ZSGSRD 36062
17-03-17 19:04:12.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.808 -07 000000415 INF: FPGA: Recv ZSGSRD 36062
17-03-17 19:04:12.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.818 -07 000000424 INF: FPGA: Recv ZSGSRD 36063
17-03-17 19:04:12.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.828 -07 000000551 INF: FPGA: Recv ZSGSRD 36056
17-03-17 19:04:12.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:12.838 -07 000000502 INF: FPGA: Recv ZSGSRD 36063
17-03-17 19:04:12.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:12.848 -07 000000569 INF: FPGA: Recv ZPIEZORD 32055
17-03-17 19:04:12.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:12.858 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -8.8 V.
17-03-17 19:04:12.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36061 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36062 (-171.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36056 (-171.1 uncal um), Max = 36066 (-171.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:04:12.858 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36061, posNoise = 5, negNoise = 5
17-03-17 19:04:12.858 -07 000000610 INF: Z Motor: After move to -0.171975, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:12.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:04:12.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:12.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:12.858 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:12.858 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:12.858 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:04:12.858 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:12.858 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:04:12.858 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:04:12.858 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:04:12.858 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:04:12.858 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:04:12.858 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:04:12.868 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:04:12.868 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:04:12.868 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:04:12.868 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:04:12.878 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:04:12.878 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:04:12.878 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:04:12.878 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:04:12.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37744 150\n [Camera]
17-03-17 19:04:13.078 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:04:13.478 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:04:13.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:04:13.478 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:13.488 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:04:13.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:04:13.488 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:13.488 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:13.488 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:04:13.498 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:13.498 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:04:13.678 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37744 783
17-03-17 19:04:13.818 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:04:13.868 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 19:04:13.868 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 19:04:13.868 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:13.868 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 19:04:13.868 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 19:04:13.868 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:13.868 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:13.868 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:13.868 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:04:13.878 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:04:14.018 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:04:14.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:04:14.018 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:14.018 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:04:14.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:04:14.018 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:14.018 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:14.018 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:04:14.018 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:14.018 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:04:14.208 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:04:14.208 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:04:14.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37744 150' command took 2 ms to send, 1315 ms to get response, and 1326 ms overall
17-03-17 19:04:14.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:04:14.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.171986866055177. ------
17-03-17 19:04:14.218 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:04:14.218 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17821 mm
17-03-17 19:04:14.218 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:04:14.218 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:04:14.218 -07 000000502 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 19:04:14.218 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38929, sync = True, waitForSettling = False)
17-03-17 19:04:14.218 -07 000000569 INF: Z Motor: Moving to -0.178206 mm, started at -0.171987 mm, distance = -6.22 um
17-03-17 19:04:14.228 -07 000000569 INF: FPGA: Xmit ZDACW 38929\n [Z Motor]
17-03-17 19:04:14.238 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:14.398 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:04:14.398 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:04:14.398 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:14.398 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 19:04:14.398 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 19:04:14.398 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:14.398 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:04:14.398 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:04:14.398 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:04:14.408 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:04:14.448 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:04:14.448 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:04:14.448 -07 000000486 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:04:14.448 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 227 ms to get response, and 237 ms overall
17-03-17 19:04:14.448 -07 000000569 INF: FPGA: 'ZDACW 38929' command took 0 ms to send, 217 ms to get response, and 231 ms overall
17-03-17 19:04:14.448 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:14.448 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 207 ms to get response, and 232 ms overall
17-03-17 19:04:14.448 -07 000000502 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:14.448 -07 000000502 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:04:14.448 -07 000000502 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:04:14.458 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:04:14.458 -07 000000486 INF: FPGA: Recv ZDACR 38929
17-03-17 19:04:14.458 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:04:14.458 -07 000000569 INF: Z Motor: MoveAbsStepped took 235 ms (did NOT wait for settling yet))
17-03-17 19:04:14.468 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:04:14.658 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:04:14.658 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 204 ms overall
17-03-17 19:04:14.838 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 19:04:14.838 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-17 19:04:14.878 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:14.878 -07 000000486 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:04:14.888 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:04:14.888 -07 000000502 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:14.888 -07 000000502 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:04:14.888 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.838 mm, average velocity = 2.155 mm/sec
17-03-17 19:04:15.838 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:15.838 -07 000000486 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:04:15.848 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:15.848 -07 000000502 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:15.858 -07 000000502 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:04:15.858 -07 000000502 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:04:15.868 -07 000000502 INF: Y Motor: Moved to 62.3960 after 1644 ms (table move)
17-03-17 19:04:15.868 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178206 mm (DAC = 38929)
17-03-17 19:04:15.868 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:15.868 -07 000000462 INF: FPGA: Recv ZSGSRD 37032
17-03-17 19:04:15.878 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:04:15.878 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:15.878 -07 000000486 INF: FPGA: Recv ZSGSRD 37029
17-03-17 19:04:15.888 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:15.888 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:15.888 -07 000000415 INF: FPGA: Recv ZSGSRD 37032
17-03-17 19:04:15.898 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:15.898 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:15.898 -07 000000569 INF: FPGA: Recv ZSGSRD 37033
17-03-17 19:04:15.908 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:15.908 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:15.908 -07 000000415 INF: FPGA: Recv ZSGSRD 37021
17-03-17 19:04:15.918 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:15.918 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:15.918 -07 000000486 INF: FPGA: Recv ZSGSRD 37034
17-03-17 19:04:15.928 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:15.928 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:15.928 -07 000000462 INF: FPGA: Recv ZSGSRD 37029
17-03-17 19:04:15.938 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:15.938 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:15.938 -07 000000438 INF: FPGA: Recv ZSGSRD 37024
17-03-17 19:04:15.948 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:15.948 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:15.948 -07 000000502 INF: FPGA: Recv ZSGSRD 37025
17-03-17 19:04:15.958 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:15.958 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:15.958 -07 000000486 INF: FPGA: Recv ZSGSRD 37028
17-03-17 19:04:15.968 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:15.978 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:15.978 -07 000000626 INF: FPGA: Recv ZPIEZORD 33397
17-03-17 19:04:15.988 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:04:15.988 -07 000000424 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.940 V. Piezo Error = -8.1 V.
17-03-17 19:04:15.988 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.2 um, Read 10 ADC samples: Avg = 37029 (-177.3 uncal um), Error = 0.9 uncal um, Median = 37029 (-177.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37021 (-177.3 uncal um), Max = 37034 (-177.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:04:15.988 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37029, posNoise = 5, negNoise = 8
17-03-17 19:04:15.988 -07 000000424 INF: Z Motor: After move to -0.178206, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:15.988 -07 000000424 INF: Z Motor: Settle wait time = 1647 ms, measure time = 117 ms (allowed 150 ms), total time = 1764 ms
17-03-17 19:04:15.988 -07 000000424 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 19:04:16.028 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1809 ms
17-03-17 19:04:16.028 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:04:16.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:16.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:16.028 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:16.028 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:16.028 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:04:16.028 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:16.028 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:04:16.028 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:04:16.038 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:04:16.038 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:04:16.038 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:04:16.038 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:04:16.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:04:16.088 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:04:16.288 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.003063,
17-03-17 19:04:16.288 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:04:16.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:04:16.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:04:16.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 19:04:16.328 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:04:16.328 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 19:04:16.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 19:04:16.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 147 ms.
17-03-17 19:04:16.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:16.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:04:16.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 150 ms.
17-03-17 19:04:16.538 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:04:16.538 -07 000000502 INF: Autofocus start
17-03-17 19:04:16.538 -07 000000502 INF: MeasureProfile start
17-03-17 19:04:16.538 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:04:16.548 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:04:16.548 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:04:16.548 -07 000000502 INF: MeasureProfile done
17-03-17 19:04:16.548 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:04:16.548 -07 000000502 INF: Autofocus finished
17-03-17 19:04:16.648 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:04:16.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:04:16.748 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:04:16.748 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:04:16.748 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.178205503408401. ----------
17-03-17 19:04:16.748 -07 000000610 INF: Cycle	21	Tile	4	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:04:16.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37444, sync = True, waitForSettling = True)
17-03-17 19:04:16.758 -07 000000610 INF: Z Motor: Moving to -0.171408 mm, started at -0.178206 mm, distance = 6.80 um
17-03-17 19:04:16.758 -07 000000610 INF: FPGA: Xmit ZDACW 37444\n [Z Motor]
17-03-17 19:04:16.758 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:04:16.768 -07 000000610 INF: FPGA: 'ZDACW 37444' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:04:16.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:16.768 -07 000000438 INF: FPGA: Recv ZDACR 37444
17-03-17 19:04:16.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:16.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:04:16.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:16.928 -07 000000569 INF: FPGA: Recv ZSGSRD 35976
17-03-17 19:04:16.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:16.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:16.938 -07 000000462 INF: FPGA: Recv ZSGSRD 35974
17-03-17 19:04:16.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:16.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:16.948 -07 000000502 INF: FPGA: Recv ZSGSRD 35970
17-03-17 19:04:16.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:16.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:16.958 -07 000000415 INF: FPGA: Recv ZSGSRD 35969
17-03-17 19:04:16.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:16.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:16.968 -07 000000626 INF: FPGA: Recv ZSGSRD 35971
17-03-17 19:04:16.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:16.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:16.978 -07 000000486 INF: FPGA: Recv ZSGSRD 35974
17-03-17 19:04:16.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:16.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:16.988 -07 000000569 INF: FPGA: Recv ZSGSRD 35971
17-03-17 19:04:16.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:16.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:16.998 -07 000000438 INF: FPGA: Recv ZSGSRD 35976
17-03-17 19:04:17.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:17.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:17.008 -07 000000424 INF: FPGA: Recv ZSGSRD 35972
17-03-17 19:04:17.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:17.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:17.018 -07 000000462 INF: FPGA: Recv ZSGSRD 35972
17-03-17 19:04:17.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:17.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:17.028 -07 000000424 INF: FPGA: Recv ZPIEZORD 32002
17-03-17 19:04:17.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:17.038 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.714 V. Piezo Error = -8.8 V.
17-03-17 19:04:17.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35972 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35972 (-170.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35969 (-170.5 uncal um), Max = 35976 (-170.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:04:17.038 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35972, posNoise = 4, negNoise = 3
17-03-17 19:04:17.038 -07 000000610 INF: Z Motor: After move to -0.171408, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:17.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:04:17.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:17.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:17.038 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:17.038 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:17.038 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:04:17.038 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:17.038 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:04:17.038 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:04:17.038 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:04:17.038 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:04:17.038 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:04:17.038 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:04:17.048 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:04:17.048 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:04:17.048 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:04:17.048 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:04:17.068 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:04:17.068 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 19:04:17.068 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:04:17.068 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 19:04:17.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37621 150\n [Camera]
17-03-17 19:04:17.268 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:04:17.668 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:04:17.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:04:17.668 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:17.668 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:04:17.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:04:17.668 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:17.668 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:17.668 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) start.
17-03-17 19:04:17.678 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:17.678 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:04:17.858 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37621 783
17-03-17 19:04:18.008 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:04:18.048 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:04:18.048 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:04:18.048 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:18.048 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:04:18.048 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:04:18.048 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:18.058 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:04:18.058 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:04:18.058 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:04:18.068 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:04:18.198 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:04:18.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:04:18.198 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:18.208 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:04:18.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:04:18.208 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:18.208 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:18.208 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:04:18.208 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:18.208 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 19:04:18.388 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-17 19:04:18.388 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:04:18.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37621 150' command took 2 ms to send, 1318 ms to get response, and 1324 ms overall
17-03-17 19:04:18.398 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.172055
17-03-17 19:04:18.398 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17205 mm
17-03-17 19:04:18.398 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:04:18.508 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:04:18.508 -07 000000502 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 19:04:18.508 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:18.508 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 37585, sync = True, waitForSettling = False)
17-03-17 19:04:18.508 -07 000000438 INF: Z Motor: Moving to -0.172053 mm, started at -0.171415 mm, distance = -0.64 um
17-03-17 19:04:18.508 -07 000000486 INF: FPGA: Recv YRDPOS 127788
17-03-17 19:04:18.518 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:04:18.518 -07 000000502 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:18.518 -07 000000438 INF: FPGA: Xmit ZDACW 37585\n [Z Motor]
17-03-17 19:04:18.518 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:04:18.518 -07 000000502 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:04:18.518 -07 000000502 INF: Y Motor: Moving 1338 steps-14
17-03-17 19:04:18.528 -07 000000438 INF: FPGA: 'ZDACW 37585' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:04:18.528 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:18.528 -07 000000431 INF: FPGA: Recv ZDACR 37585
17-03-17 19:04:18.538 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:04:18.538 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:18.538 -07 000000438 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 19:04:18.588 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:04:18.588 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:04:18.588 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:18.588 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:04:18.588 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:04:18.588 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:18.588 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:04:18.588 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:04:18.588 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:04:18.598 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:04:18.908 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:04:18.908 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:04:18.948 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:18.948 -07 000000438 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:04:18.958 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:04:18.958 -07 000000502 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:18.958 -07 000000502 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:04:18.958 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.118 mm/sec
17-03-17 19:04:19.908 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:19.908 -07 000000424 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:04:19.918 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:19.918 -07 000000502 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:19.928 -07 000000502 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:04:19.938 -07 000000502 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:04:19.938 -07 000000502 INF: Y Motor: Moved to 63.2251 after 1424 ms (table move)
17-03-17 19:04:19.938 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172053 mm (DAC = 37585)
17-03-17 19:04:19.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:19.938 -07 000000424 INF: FPGA: Recv ZSGSRD 36078
17-03-17 19:04:19.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:04:19.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:19.948 -07 000000502 INF: FPGA: Recv ZSGSRD 36066
17-03-17 19:04:19.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:19.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:19.958 -07 000000502 INF: FPGA: Recv ZSGSRD 36072
17-03-17 19:04:19.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:19.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:19.968 -07 000000502 INF: FPGA: Recv ZSGSRD 36065
17-03-17 19:04:19.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:19.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:19.978 -07 000000424 INF: FPGA: Recv ZSGSRD 36075
17-03-17 19:04:19.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:19.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:19.988 -07 000000424 INF: FPGA: Recv ZSGSRD 36078
17-03-17 19:04:19.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:19.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:19.998 -07 000000424 INF: FPGA: Recv ZSGSRD 36077
17-03-17 19:04:20.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:20.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:20.008 -07 000000502 INF: FPGA: Recv ZSGSRD 36075
17-03-17 19:04:20.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:20.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:20.018 -07 000000502 INF: FPGA: Recv ZSGSRD 36067
17-03-17 19:04:20.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:20.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:20.028 -07 000000502 INF: FPGA: Recv ZSGSRD 36070
17-03-17 19:04:20.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:20.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:20.038 -07 000000502 INF: FPGA: Recv ZPIEZORD 32129
17-03-17 19:04:20.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:20.048 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.735 V. Piezo Error = -8.7 V.
17-03-17 19:04:20.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36072 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36074 (-171.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36065 (-171.1 uncal um), Max = 36078 (-171.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:04:20.048 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36072, posNoise = 6, negNoise = 7
17-03-17 19:04:20.048 -07 000000610 INF: Z Motor: After move to -0.172053, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:20.048 -07 000000610 INF: Z Motor: Settle wait time = 1425 ms, measure time = 108 ms (allowed 150 ms), total time = 1533 ms
17-03-17 19:04:20.048 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:04:20.098 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1699 ms
17-03-17 19:04:20.098 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:04:20.098 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.172057532388736. ----------
17-03-17 19:04:20.098 -07 000000610 INF: Cycle	21	Tile	5	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:04:20.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37409, sync = True, waitForSettling = True)
17-03-17 19:04:20.098 -07 000000610 INF: Z Motor: Moving to -0.171247 mm, started at -0.172058 mm, distance = 0.81 um
17-03-17 19:04:20.098 -07 000000610 INF: FPGA: Xmit ZDACW 37409\n [Z Motor]
17-03-17 19:04:20.108 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:04:20.108 -07 000000610 INF: FPGA: 'ZDACW 37409' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 19:04:20.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:20.108 -07 000000593 INF: FPGA: Recv ZDACR 37409
17-03-17 19:04:20.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:04:20.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:04:20.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:20.268 -07 000000462 INF: FPGA: Recv ZSGSRD 35939
17-03-17 19:04:20.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:20.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:20.278 -07 000000424 INF: FPGA: Recv ZSGSRD 35945
17-03-17 19:04:20.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:20.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:20.288 -07 000000424 INF: FPGA: Recv ZSGSRD 35952
17-03-17 19:04:20.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:20.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:20.298 -07 000000462 INF: FPGA: Recv ZSGSRD 35948
17-03-17 19:04:20.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:20.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:20.308 -07 000000424 INF: FPGA: Recv ZSGSRD 35951
17-03-17 19:04:20.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:20.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:20.318 -07 000000438 INF: FPGA: Recv ZSGSRD 35945
17-03-17 19:04:20.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:20.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:20.328 -07 000000438 INF: FPGA: Recv ZSGSRD 35948
17-03-17 19:04:20.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:20.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:20.338 -07 000000424 INF: FPGA: Recv ZSGSRD 35949
17-03-17 19:04:20.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:20.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:20.348 -07 000000593 INF: FPGA: Recv ZSGSRD 35940
17-03-17 19:04:20.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:20.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:20.358 -07 000000424 INF: FPGA: Recv ZSGSRD 35947
17-03-17 19:04:20.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:20.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:20.368 -07 000000593 INF: FPGA: Recv ZPIEZORD 31954
17-03-17 19:04:20.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:20.378 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.708 V. Piezo Error = -8.8 V.
17-03-17 19:04:20.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35946 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35948 (-170.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35939 (-170.3 uncal um), Max = 35952 (-170.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:04:20.378 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35946, posNoise = 6, negNoise = 7
17-03-17 19:04:20.378 -07 000000610 INF: Z Motor: After move to -0.171247, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:20.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:04:20.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:20.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:20.378 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:20.378 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:20.378 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:04:20.378 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:20.378 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:04:20.378 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:04:20.378 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:04:20.378 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:04:20.378 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:04:20.378 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:04:20.378 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:04:20.378 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:04:20.378 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:04:20.378 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:04:20.388 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:04:20.388 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:04:20.388 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:04:20.388 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:04:20.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37585 150\n [Camera]
17-03-17 19:04:20.598 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:04:20.988 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:04:20.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:04:20.998 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:20.998 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:04:20.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:04:20.998 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:20.998 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:20.998 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:04:20.998 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:20.998 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:04:21.188 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37585 783
17-03-17 19:04:21.338 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:04:21.368 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 19:04:21.368 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 19:04:21.368 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:21.378 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:04:21.378 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:04:21.378 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:21.378 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:21.378 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:21.378 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:04:21.388 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:04:21.528 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:04:21.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:04:21.528 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:21.528 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:21.528 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:04:21.528 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:04:21.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:04:21.528 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:21.528 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:21.528 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1081577064, 0x0, 418435064) start.
17-03-17 19:04:21.648 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.999021,
17-03-17 19:04:21.648 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:04:21.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:04:21.718 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:04:21.718 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:04:21.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37585 150' command took 2 ms to send, 1315 ms to get response, and 1323 ms overall
17-03-17 19:04:21.718 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.171665
17-03-17 19:04:21.718 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17166 mm
17-03-17 19:04:21.718 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:04:21.728 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:04:21.728 -07 000000502 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 19:04:21.728 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 37500, sync = True, waitForSettling = False)
17-03-17 19:04:21.728 -07 000000415 INF: Z Motor: Moving to -0.171664 mm, started at -0.171248 mm, distance = -0.42 um
17-03-17 19:04:21.728 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:21.728 -07 000000424 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:04:21.738 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:21.738 -07 000000502 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:21.738 -07 000000502 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:04:21.738 -07 000000502 INF: Y Motor: Moving 1340 steps-15
17-03-17 19:04:21.738 -07 000000415 INF: FPGA: Xmit ZDACW 37500\n [Z Motor]
17-03-17 19:04:21.738 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:04:21.748 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:04:21.748 -07 000000415 INF: FPGA: 'ZDACW 37500' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:04:21.758 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:21.758 -07 000000569 INF: FPGA: Recv ZDACR 37500
17-03-17 19:04:21.768 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:04:21.768 -07 000000415 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 19:04:21.908 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:04:21.908 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:04:21.908 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:21.908 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1081577064, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:04:21.908 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:04:21.908 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:21.918 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:04:21.918 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:04:21.918 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:21.918 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:04:22.118 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:04:22.118 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:04:22.158 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:22.158 -07 000000551 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:04:22.168 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:22.168 -07 000000502 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:22.168 -07 000000502 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 19:04:22.168 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.164 mm/sec
17-03-17 19:04:23.118 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:23.118 -07 000000424 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:04:23.128 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:23.128 -07 000000502 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:23.138 -07 000000502 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:04:23.138 -07 000000502 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:04:23.138 -07 000000502 INF: Y Motor: Moved to 64.0576 after 1416 ms (table move)
17-03-17 19:04:23.138 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171664 mm (DAC = 37500)
17-03-17 19:04:23.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.148 -07 000000424 INF: FPGA: Recv ZSGSRD 36011
17-03-17 19:04:23.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:04:23.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.148 -07 000000438 INF: FPGA: Recv ZSGSRD 36021
17-03-17 19:04:23.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:04:23.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.158 -07 000000424 INF: FPGA: Recv ZSGSRD 36011
17-03-17 19:04:23.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.168 -07 000000415 INF: FPGA: Recv ZSGSRD 36011
17-03-17 19:04:23.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.178 -07 000000502 INF: FPGA: Recv ZSGSRD 36018
17-03-17 19:04:23.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.188 -07 000000569 INF: FPGA: Recv ZSGSRD 36014
17-03-17 19:04:23.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.198 -07 000000424 INF: FPGA: Recv ZSGSRD 36016
17-03-17 19:04:23.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.208 -07 000000438 INF: FPGA: Recv ZSGSRD 36016
17-03-17 19:04:23.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.218 -07 000000486 INF: FPGA: Recv ZSGSRD 36007
17-03-17 19:04:23.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.228 -07 000000569 INF: FPGA: Recv ZSGSRD 36008
17-03-17 19:04:23.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:23.238 -07 000000424 INF: FPGA: Recv ZPIEZORD 32039
17-03-17 19:04:23.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.248 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -8.8 V.
17-03-17 19:04:23.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36013 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36012 (-170.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36007 (-170.8 uncal um), Max = 36021 (-170.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:04:23.248 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36013, posNoise = 8, negNoise = 6
17-03-17 19:04:23.248 -07 000000610 INF: Z Motor: After move to -0.171664, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:23.248 -07 000000610 INF: Z Motor: Settle wait time = 1418 ms, measure time = 106 ms (allowed 150 ms), total time = 1524 ms
17-03-17 19:04:23.248 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:04:23.298 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1572 ms
17-03-17 19:04:23.298 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:04:23.298 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.171678503872372. ----------
17-03-17 19:04:23.298 -07 000000610 INF: Cycle	21	Tile	6	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:04:23.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37323, sync = True, waitForSettling = True)
17-03-17 19:04:23.298 -07 000000610 INF: Z Motor: Moving to -0.170854 mm, started at -0.171679 mm, distance = 0.82 um
17-03-17 19:04:23.298 -07 000000610 INF: FPGA: Xmit ZDACW 37323\n [Z Motor]
17-03-17 19:04:23.298 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:04:23.308 -07 000000610 INF: FPGA: 'ZDACW 37323' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:04:23.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:23.308 -07 000000569 INF: FPGA: Recv ZDACR 37323
17-03-17 19:04:23.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:04:23.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.468 -07 000000424 INF: FPGA: Recv ZSGSRD 35886
17-03-17 19:04:23.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:23.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.478 -07 000000502 INF: FPGA: Recv ZSGSRD 35889
17-03-17 19:04:23.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.488 -07 000000486 INF: FPGA: Recv ZSGSRD 35889
17-03-17 19:04:23.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.498 -07 000000569 INF: FPGA: Recv ZSGSRD 35884
17-03-17 19:04:23.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.508 -07 000000438 INF: FPGA: Recv ZSGSRD 35888
17-03-17 19:04:23.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.518 -07 000000626 INF: FPGA: Recv ZSGSRD 35887
17-03-17 19:04:23.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.528 -07 000000502 INF: FPGA: Recv ZSGSRD 35884
17-03-17 19:04:23.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.538 -07 000000415 INF: FPGA: Recv ZSGSRD 35887
17-03-17 19:04:23.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.548 -07 000000551 INF: FPGA: Recv ZSGSRD 35885
17-03-17 19:04:23.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:23.558 -07 000000502 INF: FPGA: Recv ZSGSRD 35880
17-03-17 19:04:23.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:23.568 -07 000000626 INF: FPGA: Recv ZPIEZORD 31860
17-03-17 19:04:23.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:23.578 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.695 V. Piezo Error = -8.9 V.
17-03-17 19:04:23.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35886 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35886 (-170.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35880 (-169.9 uncal um), Max = 35889 (-170.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:04:23.578 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35886, posNoise = 3, negNoise = 6
17-03-17 19:04:23.578 -07 000000610 INF: Z Motor: After move to -0.170854, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:23.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:04:23.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:23.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:23.578 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:23.578 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:23.578 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:04:23.578 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:23.578 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:04:23.578 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:04:23.578 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:04:23.578 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:04:23.578 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:04:23.578 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:04:23.578 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:04:23.578 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:04:23.588 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:04:23.588 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:04:23.598 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:04:23.598 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:04:23.598 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:04:23.598 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:04:23.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37500 150\n [Camera]
17-03-17 19:04:23.798 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:04:24.198 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:04:24.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:04:24.198 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:24.198 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:24.198 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1116999328, 0x0, 391868352) start.
17-03-17 19:04:24.208 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:04:24.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:04:24.208 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:24.208 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:24.208 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1152421592, 0x0, 418435064) start.
17-03-17 19:04:24.388 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37500 783
17-03-17 19:04:24.538 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:04:24.578 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1116999328, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:04:24.578 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:04:24.578 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:24.578 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1152421592, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:04:24.578 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:04:24.578 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:24.588 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:24.588 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:04:24.588 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:24.588 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:04:24.738 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:04:24.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:04:24.738 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:24.738 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:24.738 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 19:04:24.738 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:04:24.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:04:24.738 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:24.738 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:24.738 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 19:04:24.928 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:04:24.928 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:04:24.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37500 150' command took 2 ms to send, 1312 ms to get response, and 1323 ms overall
17-03-17 19:04:24.928 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.171429
17-03-17 19:04:24.928 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17143 mm
17-03-17 19:04:24.928 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:04:24.928 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:04:24.928 -07 000000415 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 19:04:24.928 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:24.928 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37449, sync = True, waitForSettling = False)
17-03-17 19:04:24.938 -07 000000502 INF: Z Motor: Moving to -0.171431 mm, started at -0.170863 mm, distance = -0.57 um
17-03-17 19:04:24.938 -07 000000502 INF: FPGA: Xmit ZDACW 37449\n [Z Motor]
17-03-17 19:04:24.938 -07 000000438 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:04:24.938 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 19:04:24.938 -07 000000415 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:24.938 -07 000000415 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:04:24.938 -07 000000415 INF: Y Motor: Moving 1336 steps-10
17-03-17 19:04:24.938 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:04:24.948 -07 000000502 INF: FPGA: 'ZDACW 37449' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:24.948 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:04:24.958 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:24.958 -07 000000486 INF: FPGA: Recv ZDACR 37449
17-03-17 19:04:24.968 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:04:24.968 -07 000000502 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 19:04:25.118 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:04:25.118 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:04:25.118 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:25.118 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:04:25.118 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:04:25.118 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:25.128 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:25.128 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:04:25.128 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:25.128 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:04:25.318 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 19:04:25.318 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 19:04:25.358 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:25.358 -07 000000593 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:04:25.368 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:04:25.368 -07 000000415 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:25.368 -07 000000415 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:04:25.368 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.835 mm, average velocity = 2.163 mm/sec
17-03-17 19:04:26.318 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:26.318 -07 000000593 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:04:26.328 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:26.328 -07 000000415 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:26.348 -07 000000415 INF: Y Motor: After move to 64.892609, error = -0.012726, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:04:26.348 -07 000000415 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:04:26.348 -07 000000415 INF: Y Motor: Moved to 64.8799 after 1411 ms (table move)
17-03-17 19:04:26.348 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171431 mm (DAC = 37449)
17-03-17 19:04:26.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.348 -07 000000424 INF: FPGA: Recv ZSGSRD 35984
17-03-17 19:04:26.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:04:26.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.358 -07 000000415 INF: FPGA: Recv ZSGSRD 35978
17-03-17 19:04:26.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:26.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.368 -07 000000431 INF: FPGA: Recv ZSGSRD 35967
17-03-17 19:04:26.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:26.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.378 -07 000000626 INF: FPGA: Recv ZSGSRD 35978
17-03-17 19:04:26.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:04:26.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.388 -07 000000486 INF: FPGA: Recv ZSGSRD 35979
17-03-17 19:04:26.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:26.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.398 -07 000000626 INF: FPGA: Recv ZSGSRD 35977
17-03-17 19:04:26.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:26.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.408 -07 000000462 INF: FPGA: Recv ZSGSRD 35986
17-03-17 19:04:26.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:26.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.418 -07 000000626 INF: FPGA: Recv ZSGSRD 35973
17-03-17 19:04:26.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:26.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.428 -07 000000462 INF: FPGA: Recv ZSGSRD 35972
17-03-17 19:04:26.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:26.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.438 -07 000000486 INF: FPGA: Recv ZSGSRD 35977
17-03-17 19:04:26.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:26.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:26.448 -07 000000462 INF: FPGA: Recv ZPIEZORD 32015
17-03-17 19:04:26.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:26.458 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.714 V. Piezo Error = -8.8 V.
17-03-17 19:04:26.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35977 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35978 (-170.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35967 (-170.5 uncal um), Max = 35986 (-170.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:04:26.458 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35977, posNoise = 9, negNoise = 10
17-03-17 19:04:26.458 -07 000000610 INF: Z Motor: After move to -0.171431, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:26.458 -07 000000610 INF: Z Motor: Settle wait time = 1413 ms, measure time = 107 ms (allowed 150 ms), total time = 1520 ms
17-03-17 19:04:26.458 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:04:26.508 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 19:04:26.508 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:04:26.508 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8798828125, Z-position -0.171447232235269. ----------
17-03-17 19:04:26.508 -07 000000610 INF: Cycle	21	Tile	7	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:04:26.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37272, sync = True, waitForSettling = True)
17-03-17 19:04:26.508 -07 000000610 INF: Z Motor: Moving to -0.170620 mm, started at -0.171447 mm, distance = 0.83 um
17-03-17 19:04:26.508 -07 000000610 INF: FPGA: Xmit ZDACW 37272\n [Z Motor]
17-03-17 19:04:26.508 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:04:26.518 -07 000000610 INF: FPGA: 'ZDACW 37272' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:04:26.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:26.518 -07 000000593 INF: FPGA: Recv ZDACR 37272
17-03-17 19:04:26.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:26.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:04:26.648 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:04:26.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:04:26.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.678 -07 000000486 INF: FPGA: Recv ZSGSRD 35852
17-03-17 19:04:26.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:26.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.698 -07 000000569 INF: FPGA: Recv ZSGSRD 35853
17-03-17 19:04:26.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:04:26.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.708 -07 000000486 INF: FPGA: Recv ZSGSRD 35853
17-03-17 19:04:26.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:26.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.718 -07 000000431 INF: FPGA: Recv ZSGSRD 35849
17-03-17 19:04:26.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:26.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.728 -07 000000431 INF: FPGA: Recv ZSGSRD 35853
17-03-17 19:04:26.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:26.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.738 -07 000000438 INF: FPGA: Recv ZSGSRD 35850
17-03-17 19:04:26.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:26.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.748 -07 000000431 INF: FPGA: Recv ZSGSRD 35852
17-03-17 19:04:26.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:26.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.758 -07 000000569 INF: FPGA: Recv ZSGSRD 35848
17-03-17 19:04:26.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:26.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.768 -07 000000502 INF: FPGA: Recv ZSGSRD 35849
17-03-17 19:04:26.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:26.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:26.778 -07 000000486 INF: FPGA: Recv ZSGSRD 35856
17-03-17 19:04:26.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:26.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:26.788 -07 000000431 INF: FPGA: Recv ZPIEZORD 31843
17-03-17 19:04:26.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:26.798 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -8.8 V.
17-03-17 19:04:26.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35852 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35852 (-169.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35848 (-169.7 uncal um), Max = 35856 (-169.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:04:26.798 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35852, posNoise = 4, negNoise = 4
17-03-17 19:04:26.798 -07 000000610 INF: Z Motor: After move to -0.170620, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:26.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-17 19:04:26.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:26.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:26.798 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:26.798 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:26.798 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:04:26.798 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:04:26.798 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:26.798 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:04:26.798 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:04:26.798 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:04:26.798 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:04:26.798 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:04:26.808 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:04:26.808 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:04:26.808 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:04:26.808 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:04:26.818 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:04:26.818 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:04:26.818 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:04:26.818 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:04:26.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37449 150\n [Camera]
17-03-17 19:04:27.008 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.99219,
17-03-17 19:04:27.018 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:04:27.418 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:04:27.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:04:27.418 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:27.418 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:27.418 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:04:27.428 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:04:27.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:04:27.428 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:27.428 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:27.428 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:04:27.618 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37449 783
17-03-17 19:04:27.768 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:04:27.798 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:04:27.798 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:04:27.798 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:27.798 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:04:27.798 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:04:27.798 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:27.808 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:04:27.808 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:04:27.808 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:04:27.818 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:04:27.958 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:04:27.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:04:27.958 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:27.958 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:27.958 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 19:04:27.958 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:04:27.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:04:27.958 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:27.958 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:27.958 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:04:28.148 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:04:28.148 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:04:28.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37449 150' command took 2 ms to send, 1317 ms to get response, and 1327 ms overall
17-03-17 19:04:28.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:04:28.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8798828125, Z-Position -0.170644205717549. ------
17-03-17 19:04:28.158 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:04:28.158 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17719 mm
17-03-17 19:04:28.158 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:04:28.158 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:04:28.158 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:04:28.168 -07 000000551 INF: Y Motor: Moving to 65.7226 mm, started at 64.8799 mm, delta = 0.8427 mm
17-03-17 19:04:28.168 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:28.168 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:04:28.168 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38706, sync = True, waitForSettling = False)
17-03-17 19:04:28.168 -07 000000438 INF: Z Motor: Moving to -0.177185 mm, started at -0.170644 mm, distance = -6.54 um
17-03-17 19:04:28.168 -07 000000569 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:04:28.178 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:28.178 -07 000000551 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:28.178 -07 000000551 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:04:28.178 -07 000000551 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:04:28.178 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:04:28.188 -07 000000438 INF: FPGA: Xmit ZDACW 38706\n [Z Motor]
17-03-17 19:04:28.188 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:04:28.198 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:04:28.198 -07 000000438 INF: FPGA: 'ZDACW 38706' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:04:28.208 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:28.208 -07 000000593 INF: FPGA: Recv ZDACR 38706
17-03-17 19:04:28.218 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:04:28.218 -07 000000438 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 19:04:28.338 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:04:28.338 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:04:28.338 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:28.338 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:04:28.338 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:04:28.338 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:28.338 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:04:28.348 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:28.348 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:04:28.348 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:04:28.378 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:04:28.378 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 212 ms overall
17-03-17 19:04:28.568 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:04:28.568 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:04:28.608 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:28.618 -07 000000593 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:04:28.618 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:04:28.618 -07 000000551 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:28.618 -07 000000551 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:04:28.618 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.123 mm/sec
17-03-17 19:04:29.568 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:29.568 -07 000000593 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:04:29.578 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:29.578 -07 000000551 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:29.598 -07 000000551 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:04:29.598 -07 000000551 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:04:29.598 -07 000000551 INF: Y Motor: Moved to 65.7148 after 1431 ms (table move)
17-03-17 19:04:29.598 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177185 mm (DAC = 38706)
17-03-17 19:04:29.598 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:29.598 -07 000000431 INF: FPGA: Recv ZSGSRD 36870
17-03-17 19:04:29.608 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:04:29.608 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:29.608 -07 000000593 INF: FPGA: Recv ZSGSRD 36868
17-03-17 19:04:29.618 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:29.618 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:29.618 -07 000000626 INF: FPGA: Recv ZSGSRD 36868
17-03-17 19:04:29.628 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:29.628 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:29.628 -07 000000561 INF: FPGA: Recv ZSGSRD 36876
17-03-17 19:04:29.638 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:29.638 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:29.638 -07 000000438 INF: FPGA: Recv ZSGSRD 36875
17-03-17 19:04:29.648 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:29.648 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:29.648 -07 000000561 INF: FPGA: Recv ZSGSRD 36872
17-03-17 19:04:29.658 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:29.658 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:29.658 -07 000000626 INF: FPGA: Recv ZSGSRD 36876
17-03-17 19:04:29.668 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:29.668 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:29.668 -07 000000480 INF: FPGA: Recv ZSGSRD 36863
17-03-17 19:04:29.678 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:29.678 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:29.678 -07 000000626 INF: FPGA: Recv ZSGSRD 36867
17-03-17 19:04:29.688 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:29.688 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:29.688 -07 000000593 INF: FPGA: Recv ZSGSRD 36874
17-03-17 19:04:29.698 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:29.698 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:29.698 -07 000000626 INF: FPGA: Recv ZPIEZORD 33183
17-03-17 19:04:29.708 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:29.708 -07 000000424 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.906 V. Piezo Error = -8.2 V.
17-03-17 19:04:29.708 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36871 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36871 (-176.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36863 (-176.2 uncal um), Max = 36876 (-176.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:04:29.708 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36871, posNoise = 5, negNoise = 8
17-03-17 19:04:29.708 -07 000000424 INF: Z Motor: After move to -0.177185, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:29.708 -07 000000424 INF: Z Motor: Settle wait time = 1432 ms, measure time = 107 ms (allowed 150 ms), total time = 1539 ms
17-03-17 19:04:29.708 -07 000000424 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:04:29.758 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 19:04:29.758 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:04:29.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:29.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:29.758 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:29.758 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:29.758 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:04:29.758 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:29.758 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:04:29.758 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:04:29.768 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:04:29.768 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:04:29.778 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 19:04:29.778 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:04:29.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:04:29.818 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:04:30.018 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:04:30.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:04:30.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:04:30.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 19:04:30.058 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:04:30.058 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 19:04:30.058 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 19:04:30.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:04:30.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:30.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:04:30.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:04:30.258 -07 000000415 INF: Autofocus start
17-03-17 19:04:30.258 -07 000000415 INF: MeasureProfile start
17-03-17 19:04:30.258 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:04:30.258 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:04:30.268 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:04:30.268 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:04:30.268 -07 000000415 INF: MeasureProfile done
17-03-17 19:04:30.268 -07 000000415 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:04:30.268 -07 000000415 INF: Autofocus finished
17-03-17 19:04:30.468 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:04:30.468 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:04:30.468 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.177190477890003. ----------
17-03-17 19:04:30.468 -07 000000610 INF: Cycle	21	Tile	8	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:04:30.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37239, sync = True, waitForSettling = True)
17-03-17 19:04:30.478 -07 000000610 INF: Z Motor: Moving to -0.170469 mm, started at -0.177190 mm, distance = 6.72 um
17-03-17 19:04:30.478 -07 000000610 INF: FPGA: Xmit ZDACW 37239\n [Z Motor]
17-03-17 19:04:30.478 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:04:30.488 -07 000000610 INF: FPGA: 'ZDACW 37239' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:04:30.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:30.488 -07 000000480 INF: FPGA: Recv ZDACR 37239
17-03-17 19:04:30.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:30.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:04:30.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:30.648 -07 000000569 INF: FPGA: Recv ZSGSRD 35832
17-03-17 19:04:30.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:30.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:30.658 -07 000000462 INF: FPGA: Recv ZSGSRD 35825
17-03-17 19:04:30.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:30.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:30.668 -07 000000569 INF: FPGA: Recv ZSGSRD 35828
17-03-17 19:04:30.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:30.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:30.678 -07 000000462 INF: FPGA: Recv ZSGSRD 35830
17-03-17 19:04:30.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:30.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:30.688 -07 000000626 INF: FPGA: Recv ZSGSRD 35828
17-03-17 19:04:30.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:30.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:30.698 -07 000000569 INF: FPGA: Recv ZSGSRD 35832
17-03-17 19:04:30.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:30.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:30.708 -07 000000462 INF: FPGA: Recv ZSGSRD 35824
17-03-17 19:04:30.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:30.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:30.718 -07 000000593 INF: FPGA: Recv ZSGSRD 35831
17-03-17 19:04:30.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:30.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:30.728 -07 000000424 INF: FPGA: Recv ZSGSRD 35823
17-03-17 19:04:30.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:30.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:30.738 -07 000000486 INF: FPGA: Recv ZSGSRD 35829
17-03-17 19:04:30.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:30.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:30.748 -07 000000502 INF: FPGA: Recv ZPIEZORD 31817
17-03-17 19:04:30.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:30.758 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.682 V. Piezo Error = -8.9 V.
17-03-17 19:04:30.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35828 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35828 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35823 (-169.6 uncal um), Max = 35832 (-169.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:04:30.758 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35828, posNoise = 4, negNoise = 5
17-03-17 19:04:30.758 -07 000000610 INF: Z Motor: After move to -0.170469, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:30.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:04:30.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:30.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:30.758 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:30.758 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:30.758 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:04:30.758 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:30.768 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:04:30.768 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:04:30.768 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:04:30.768 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:04:30.768 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:04:30.768 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:04:30.768 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:04:30.768 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:04:30.768 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:04:30.768 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:04:30.778 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 19:04:30.778 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:04:30.778 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 19:04:30.778 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:04:30.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37416 150\n [Camera]
17-03-17 19:04:30.988 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:04:31.388 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:04:31.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:04:31.388 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:31.388 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:31.388 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 19:04:31.388 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:04:31.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:04:31.388 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:31.388 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:31.388 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 19:04:31.578 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37416 783
17-03-17 19:04:31.648 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:04:31.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:04:31.728 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:04:31.758 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 19:04:31.758 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 19:04:31.758 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:31.758 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:04:31.758 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:04:31.768 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:31.768 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:04:31.768 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:04:31.768 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:04:31.778 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:04:31.918 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:04:31.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:04:31.918 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:31.918 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:04:31.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:04:31.918 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:31.918 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:31.918 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:04:31.918 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:31.918 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:04:32.108 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-17 19:04:32.108 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:04:32.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37416 150' command took 2 ms to send, 1316 ms to get response, and 1324 ms overall
17-03-17 19:04:32.108 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.170744
17-03-17 19:04:32.108 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17074 mm
17-03-17 19:04:32.108 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:04:32.118 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:04:32.118 -07 000000438 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 19:04:32.118 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:32.118 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37299, sync = True, waitForSettling = False)
17-03-17 19:04:32.118 -07 000000551 INF: Z Motor: Moving to -0.170744 mm, started at -0.170490 mm, distance = -0.25 um
17-03-17 19:04:32.118 -07 000000593 INF: FPGA: Recv YRDPOS 134585
17-03-17 19:04:32.128 -07 000000551 INF: FPGA: Xmit ZDACW 37299\n [Z Motor]
17-03-17 19:04:32.128 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:32.128 -07 000000438 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:32.128 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 19:04:32.128 -07 000000438 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:04:32.128 -07 000000438 INF: Y Motor: Moving 1340 steps-16
17-03-17 19:04:32.138 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:04:32.138 -07 000000551 INF: FPGA: 'ZDACW 37299' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:04:32.148 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:32.148 -07 000000480 INF: FPGA: Recv ZDACR 37299
17-03-17 19:04:32.158 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:04:32.158 -07 000000551 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 19:04:32.298 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:04:32.298 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:04:32.298 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:32.298 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:04:32.298 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:04:32.298 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:32.308 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:04:32.308 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:32.308 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:04:32.308 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:04:32.368 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.978563,
17-03-17 19:04:32.518 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:04:32.518 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 383 ms overall
17-03-17 19:04:32.548 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:32.548 -07 000000593 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:04:32.558 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:04:32.558 -07 000000438 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:32.558 -07 000000438 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:04:32.558 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.182 mm/sec
17-03-17 19:04:33.508 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:33.508 -07 000000551 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:04:33.518 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:33.518 -07 000000438 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:33.538 -07 000000438 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:04:33.538 -07 000000438 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:04:33.538 -07 000000438 INF: Y Motor: Moved to 66.5400 after 1420 ms (table move)
17-03-17 19:04:33.538 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170744 mm (DAC = 37299)
17-03-17 19:04:33.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.538 -07 000000415 INF: FPGA: Recv ZSGSRD 35865
17-03-17 19:04:33.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:04:33.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.548 -07 000000431 INF: FPGA: Recv ZSGSRD 35863
17-03-17 19:04:33.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:33.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.558 -07 000000431 INF: FPGA: Recv ZSGSRD 35870
17-03-17 19:04:33.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:04:33.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.568 -07 000000502 INF: FPGA: Recv ZSGSRD 35874
17-03-17 19:04:33.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:33.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.598 -07 000000424 INF: FPGA: Recv ZSGSRD 35867
17-03-17 19:04:33.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:04:33.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.608 -07 000000438 INF: FPGA: Recv ZSGSRD 35871
17-03-17 19:04:33.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:33.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.628 -07 000000424 INF: FPGA: Recv ZSGSRD 35868
17-03-17 19:04:33.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:04:33.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.638 -07 000000415 INF: FPGA: Recv ZSGSRD 35877
17-03-17 19:04:33.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:33.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.668 -07 000000431 INF: FPGA: Recv ZSGSRD 35873
17-03-17 19:04:33.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:04:33.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.678 -07 000000502 INF: FPGA: Recv ZSGSRD 35866
17-03-17 19:04:33.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:33.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:33.688 -07 000000431 INF: FPGA: Recv ZPIEZORD 31858
17-03-17 19:04:33.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:33.698 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.691 V. Piezo Error = -8.9 V.
17-03-17 19:04:33.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35869 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35869 (-169.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35863 (-169.8 uncal um), Max = 35877 (-169.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:04:33.698 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35869, posNoise = 8, negNoise = 6
17-03-17 19:04:33.698 -07 000000610 INF: Z Motor: After move to -0.170744, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:33.698 -07 000000610 INF: Z Motor: Settle wait time = 1421 ms, measure time = 157 ms (allowed 150 ms), total time = 1578 ms
17-03-17 19:04:33.698 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 157 ms, longer than max expected time of 150 ms
17-03-17 19:04:33.698 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 19:04:33.698 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:04:33.698 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.170753417323959. ----------
17-03-17 19:04:33.698 -07 000000610 INF: Cycle	21	Tile	9	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:04:33.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37122, sync = True, waitForSettling = True)
17-03-17 19:04:33.698 -07 000000610 INF: Z Motor: Moving to -0.169934 mm, started at -0.170753 mm, distance = 0.82 um
17-03-17 19:04:33.698 -07 000000610 INF: FPGA: Xmit ZDACW 37122\n [Z Motor]
17-03-17 19:04:33.698 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:04:33.708 -07 000000610 INF: FPGA: 'ZDACW 37122' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:04:33.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:33.708 -07 000000551 INF: FPGA: Recv ZDACR 37122
17-03-17 19:04:33.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:33.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:04:33.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.868 -07 000000424 INF: FPGA: Recv ZSGSRD 35744
17-03-17 19:04:33.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:33.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.878 -07 000000438 INF: FPGA: Recv ZSGSRD 35745
17-03-17 19:04:33.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:33.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.888 -07 000000415 INF: FPGA: Recv ZSGSRD 35746
17-03-17 19:04:33.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:33.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.898 -07 000000502 INF: FPGA: Recv ZSGSRD 35747
17-03-17 19:04:33.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:33.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.908 -07 000000480 INF: FPGA: Recv ZSGSRD 35743
17-03-17 19:04:33.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:33.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.918 -07 000000438 INF: FPGA: Recv ZSGSRD 35748
17-03-17 19:04:33.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:04:33.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.928 -07 000000502 INF: FPGA: Recv ZSGSRD 35741
17-03-17 19:04:33.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:33.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.938 -07 000000480 INF: FPGA: Recv ZSGSRD 35741
17-03-17 19:04:33.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:33.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.948 -07 000000424 INF: FPGA: Recv ZSGSRD 35742
17-03-17 19:04:33.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:33.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:33.958 -07 000000431 INF: FPGA: Recv ZSGSRD 35742
17-03-17 19:04:33.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:33.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:33.968 -07 000000502 INF: FPGA: Recv ZPIEZORD 31706
17-03-17 19:04:33.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:33.978 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.664 V. Piezo Error = -8.9 V.
17-03-17 19:04:33.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35744 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35744 (-169.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35741 (-169.1 uncal um), Max = 35748 (-169.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:04:33.978 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35744, posNoise = 4, negNoise = 3
17-03-17 19:04:33.978 -07 000000610 INF: Z Motor: After move to -0.169934, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:33.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:04:33.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:33.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:33.978 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:33.978 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:33.978 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:04:33.978 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:33.978 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:04:33.978 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:04:33.978 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:04:33.978 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:04:33.978 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:04:33.978 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:04:33.978 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:04:33.988 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:04:33.988 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:04:33.988 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:04:33.998 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:04:33.998 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:04:33.998 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:04:33.998 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:04:34.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37299 150\n [Camera]
17-03-17 19:04:34.198 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:04:34.598 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:04:34.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:04:34.598 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:34.598 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:34.598 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 19:04:34.608 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:04:34.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:04:34.608 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:34.608 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:34.608 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 19:04:34.798 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37299 783
17-03-17 19:04:34.948 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:04:34.978 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:04:34.978 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:04:34.978 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:34.978 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:04:34.978 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:04:34.978 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:34.988 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:34.988 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:04:34.988 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:34.988 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:04:35.138 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:04:35.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:04:35.138 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:35.138 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:35.138 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 19:04:35.138 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:04:35.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:04:35.138 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:35.138 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:35.138 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 19:04:35.328 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:04:35.328 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:04:35.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37299 150' command took 2 ms to send, 1314 ms to get response, and 1323 ms overall
17-03-17 19:04:35.328 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.170739
17-03-17 19:04:35.328 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17074 mm
17-03-17 19:04:35.328 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:04:35.328 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:04:35.338 -07 000000424 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 19:04:35.338 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:35.338 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 37298, sync = True, waitForSettling = False)
17-03-17 19:04:35.338 -07 000000593 INF: Z Motor: Moving to -0.170739 mm, started at -0.169950 mm, distance = -0.79 um
17-03-17 19:04:35.338 -07 000000431 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:04:35.348 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:35.348 -07 000000424 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:35.348 -07 000000424 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:04:35.348 -07 000000424 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:04:35.348 -07 000000593 INF: FPGA: Xmit ZDACW 37298\n [Z Motor]
17-03-17 19:04:35.348 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:04:35.358 -07 000000593 INF: FPGA: 'ZDACW 37298' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:04:35.358 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:35.358 -07 000000431 INF: FPGA: Recv ZDACR 37298
17-03-17 19:04:35.368 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:04:35.368 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:35.368 -07 000000593 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 19:04:35.518 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:04:35.518 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:04:35.518 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:04:35.518 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:35.528 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:04:35.528 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:35.528 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:04:35.528 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:04:35.528 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:04:35.538 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:04:35.738 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:04:35.738 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:04:35.778 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:35.778 -07 000000480 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:04:35.788 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:04:35.788 -07 000000424 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:35.788 -07 000000424 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 19:04:35.788 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 19:04:36.648 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:04:36.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:04:36.738 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:36.738 -07 000000502 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:04:36.748 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:36.748 -07 000000424 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:36.768 -07 000000424 INF: Y Motor: After move to 67.382607, error = -0.009560, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:04:36.768 -07 000000424 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:04:36.768 -07 000000424 INF: Y Motor: Moved to 67.3730 after 1431 ms (table move)
17-03-17 19:04:36.768 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170739 mm (DAC = 37298)
17-03-17 19:04:36.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:36.768 -07 000000593 INF: FPGA: Recv ZSGSRD 35869
17-03-17 19:04:36.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:04:36.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:36.778 -07 000000551 INF: FPGA: Recv ZSGSRD 35861
17-03-17 19:04:36.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:36.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:36.788 -07 000000502 INF: FPGA: Recv ZSGSRD 35866
17-03-17 19:04:36.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:36.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:36.798 -07 000000424 INF: FPGA: Recv ZSGSRD 35868
17-03-17 19:04:36.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:36.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:36.808 -07 000000502 INF: FPGA: Recv ZSGSRD 35865
17-03-17 19:04:36.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:36.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:36.818 -07 000000551 INF: FPGA: Recv ZSGSRD 35873
17-03-17 19:04:36.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:36.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:36.828 -07 000000480 INF: FPGA: Recv ZSGSRD 35870
17-03-17 19:04:36.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:36.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:36.838 -07 000000438 INF: FPGA: Recv ZSGSRD 35869
17-03-17 19:04:36.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:36.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:36.848 -07 000000502 INF: FPGA: Recv ZSGSRD 35863
17-03-17 19:04:36.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:36.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:36.858 -07 000000593 INF: FPGA: Recv ZSGSRD 35865
17-03-17 19:04:36.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:36.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:36.868 -07 000000480 INF: FPGA: Recv ZPIEZORD 31867
17-03-17 19:04:36.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:36.878 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.691 V. Piezo Error = -8.8 V.
17-03-17 19:04:36.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35867 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35867 (-169.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35861 (-169.8 uncal um), Max = 35873 (-169.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:04:36.878 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35867, posNoise = 6, negNoise = 6
17-03-17 19:04:36.878 -07 000000610 INF: Z Motor: After move to -0.170739, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:36.878 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 106 ms (allowed 150 ms), total time = 1540 ms
17-03-17 19:04:36.878 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:04:36.928 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 19:04:36.928 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:04:36.928 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.373046875, Z-position -0.170740568899675. ----------
17-03-17 19:04:36.928 -07 000000610 INF: Cycle	21	Tile	10	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:04:36.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37121, sync = True, waitForSettling = True)
17-03-17 19:04:36.928 -07 000000610 INF: Z Motor: Moving to -0.169929 mm, started at -0.170741 mm, distance = 0.81 um
17-03-17 19:04:36.928 -07 000000610 INF: FPGA: Xmit ZDACW 37121\n [Z Motor]
17-03-17 19:04:36.928 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 19:04:36.938 -07 000000610 INF: FPGA: 'ZDACW 37121' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:04:36.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:36.938 -07 000000480 INF: FPGA: Recv ZDACR 37121
17-03-17 19:04:36.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:04:36.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:04:37.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:37.098 -07 000000415 INF: FPGA: Recv ZSGSRD 35748
17-03-17 19:04:37.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:37.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:37.108 -07 000000424 INF: FPGA: Recv ZSGSRD 35742
17-03-17 19:04:37.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:37.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:37.118 -07 000000502 INF: FPGA: Recv ZSGSRD 35743
17-03-17 19:04:37.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:37.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:37.128 -07 000000438 INF: FPGA: Recv ZSGSRD 35745
17-03-17 19:04:37.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:37.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:37.138 -07 000000415 INF: FPGA: Recv ZSGSRD 35745
17-03-17 19:04:37.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:37.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:37.148 -07 000000424 INF: FPGA: Recv ZSGSRD 35741
17-03-17 19:04:37.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:37.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:37.158 -07 000000502 INF: FPGA: Recv ZSGSRD 35741
17-03-17 19:04:37.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:37.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:37.168 -07 000000593 INF: FPGA: Recv ZSGSRD 35742
17-03-17 19:04:37.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:37.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:37.178 -07 000000431 INF: FPGA: Recv ZSGSRD 35745
17-03-17 19:04:37.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:37.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:37.188 -07 000000424 INF: FPGA: Recv ZSGSRD 35741
17-03-17 19:04:37.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:37.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:37.198 -07 000000480 INF: FPGA: Recv ZPIEZORD 31716
17-03-17 19:04:37.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:37.208 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.664 V. Piezo Error = -8.9 V.
17-03-17 19:04:37.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35743 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35742 (-169.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35741 (-169.1 uncal um), Max = 35748 (-169.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 19:04:37.208 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35743, posNoise = 5, negNoise = 2
17-03-17 19:04:37.208 -07 000000610 INF: Z Motor: After move to -0.169929, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:37.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:04:37.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:37.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:37.208 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:37.208 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:37.208 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:04:37.208 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:04:37.208 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:04:37.208 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:37.208 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:04:37.208 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:04:37.208 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:04:37.208 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:04:37.218 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:04:37.218 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:04:37.218 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:04:37.218 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:04:37.228 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:04:37.228 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:04:37.228 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:04:37.228 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:04:37.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37298 150\n [Camera]
17-03-17 19:04:37.428 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:04:37.728 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.970374,
17-03-17 19:04:37.828 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:04:37.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:04:37.828 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:37.828 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:37.828 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 19:04:37.828 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:04:37.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:04:37.838 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:37.838 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:37.838 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-17 19:04:38.018 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37298 783
17-03-17 19:04:38.168 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:04:38.208 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:04:38.208 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:04:38.208 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:38.208 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:04:38.208 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:04:38.208 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:38.218 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:38.218 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:04:38.218 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:04:38.218 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:04:38.368 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:04:38.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:04:38.368 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:38.368 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:38.368 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-17 19:04:38.368 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:04:38.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:04:38.368 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:38.368 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:38.368 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) start.
17-03-17 19:04:38.558 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:04:38.558 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:04:38.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37298 150' command took 2 ms to send, 1312 ms to get response, and 1323 ms overall
17-03-17 19:04:38.558 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169736
17-03-17 19:04:38.558 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16974 mm
17-03-17 19:04:38.558 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:04:38.558 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37079, sync = True, waitForSettling = False)
17-03-17 19:04:38.558 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:04:38.558 -07 000000462 INF: Y Motor: Moving to 68.2126 mm, started at 67.3730 mm, delta = 0.8396 mm
17-03-17 19:04:38.558 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:38.558 -07 000000626 INF: Z Motor: Moving to -0.169737 mm, started at -0.169944 mm, distance = 0.21 um
17-03-17 19:04:38.568 -07 000000626 INF: FPGA: Xmit ZDACW 37079\n [Z Motor]
17-03-17 19:04:38.568 -07 000000502 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:04:38.568 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:04:38.568 -07 000000462 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:38.568 -07 000000462 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:04:38.568 -07 000000462 INF: Y Motor: Moving 1343 steps-21
17-03-17 19:04:38.568 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:04:38.578 -07 000000626 INF: FPGA: 'ZDACW 37079' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:04:38.578 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:04:38.588 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:38.588 -07 000000502 INF: FPGA: Recv ZDACR 37079
17-03-17 19:04:38.598 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:04:38.598 -07 000000626 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 19:04:38.748 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:04:38.748 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:04:38.748 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:38.748 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:04:38.748 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:04:38.748 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:38.758 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:38.758 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:04:38.758 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:04:38.768 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:04:38.948 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:04:38.948 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:04:39.018 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:39.018 -07 000000561 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:04:39.028 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:04:39.028 -07 000000462 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:39.028 -07 000000462 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:04:39.028 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.169 mm/sec
17-03-17 19:04:39.978 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:39.978 -07 000000424 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:04:39.988 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:39.988 -07 000000462 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:40.008 -07 000000462 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:04:40.008 -07 000000462 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:04:40.008 -07 000000462 INF: Y Motor: Moved to 68.2056 after 1442 ms (table move)
17-03-17 19:04:40.008 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169737 mm (DAC = 37079)
17-03-17 19:04:40.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.008 -07 000000512 INF: FPGA: Recv ZSGSRD 35711
17-03-17 19:04:40.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:04:40.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.018 -07 000000438 INF: FPGA: Recv ZSGSRD 35715
17-03-17 19:04:40.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.028 -07 000000593 INF: FPGA: Recv ZSGSRD 35706
17-03-17 19:04:40.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.038 -07 000000462 INF: FPGA: Recv ZSGSRD 35709
17-03-17 19:04:40.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.048 -07 000000561 INF: FPGA: Recv ZSGSRD 35711
17-03-17 19:04:40.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.058 -07 000000431 INF: FPGA: Recv ZSGSRD 35710
17-03-17 19:04:40.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.068 -07 000000438 INF: FPGA: Recv ZSGSRD 35712
17-03-17 19:04:40.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.078 -07 000000415 INF: FPGA: Recv ZSGSRD 35712
17-03-17 19:04:40.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.088 -07 000000569 INF: FPGA: Recv ZSGSRD 35713
17-03-17 19:04:40.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.098 -07 000000438 INF: FPGA: Recv ZSGSRD 35715
17-03-17 19:04:40.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:40.108 -07 000000561 INF: FPGA: Recv ZPIEZORD 31683
17-03-17 19:04:40.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.118 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.658 V. Piezo Error = -8.9 V.
17-03-17 19:04:40.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35711 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35712 (-168.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35706 (-168.8 uncal um), Max = 35715 (-168.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:04:40.118 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35711, posNoise = 4, negNoise = 5
17-03-17 19:04:40.118 -07 000000610 INF: Z Motor: After move to -0.169737, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:40.118 -07 000000610 INF: Z Motor: Settle wait time = 1444 ms, measure time = 108 ms (allowed 150 ms), total time = 1552 ms
17-03-17 19:04:40.118 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:04:40.168 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 19:04:40.168 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:04:40.168 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.169738391805561. ----------
17-03-17 19:04:40.168 -07 000000610 INF: Cycle	21	Tile	11	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:04:40.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36902, sync = True, waitForSettling = True)
17-03-17 19:04:40.168 -07 000000610 INF: Z Motor: Moving to -0.168927 mm, started at -0.169738 mm, distance = 0.81 um
17-03-17 19:04:40.168 -07 000000610 INF: FPGA: Xmit ZDACW 36902\n [Z Motor]
17-03-17 19:04:40.168 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:04:40.178 -07 000000610 INF: FPGA: 'ZDACW 36902' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:04:40.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:40.178 -07 000000593 INF: FPGA: Recv ZDACR 36902
17-03-17 19:04:40.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:04:40.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.338 -07 000000626 INF: FPGA: Recv ZSGSRD 35588
17-03-17 19:04:40.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:40.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.348 -07 000000512 INF: FPGA: Recv ZSGSRD 35586
17-03-17 19:04:40.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.358 -07 000000480 INF: FPGA: Recv ZSGSRD 35582
17-03-17 19:04:40.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.368 -07 000000462 INF: FPGA: Recv ZSGSRD 35589
17-03-17 19:04:40.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.378 -07 000000593 INF: FPGA: Recv ZSGSRD 35586
17-03-17 19:04:40.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.388 -07 000000480 INF: FPGA: Recv ZSGSRD 35585
17-03-17 19:04:40.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.398 -07 000000424 INF: FPGA: Recv ZSGSRD 35587
17-03-17 19:04:40.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.408 -07 000000462 INF: FPGA: Recv ZSGSRD 35587
17-03-17 19:04:40.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.418 -07 000000502 INF: FPGA: Recv ZSGSRD 35589
17-03-17 19:04:40.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:40.428 -07 000000551 INF: FPGA: Recv ZSGSRD 35580
17-03-17 19:04:40.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:40.438 -07 000000415 INF: FPGA: Recv ZPIEZORD 31543
17-03-17 19:04:40.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:40.448 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.631 V. Piezo Error = -8.9 V.
17-03-17 19:04:40.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35586 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35586 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35580 (-168.0 uncal um), Max = 35589 (-168.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:04:40.448 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35586, posNoise = 3, negNoise = 6
17-03-17 19:04:40.448 -07 000000610 INF: Z Motor: After move to -0.168927, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:40.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:04:40.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:40.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:40.448 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:40.448 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:40.448 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:04:40.448 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:40.448 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:04:40.448 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:04:40.448 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:04:40.448 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:04:40.448 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:04:40.448 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:04:40.458 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:04:40.458 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:04:40.458 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:04:40.458 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:04:40.468 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:04:40.468 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:04:40.468 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:04:40.468 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:04:40.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37079 150\n [Camera]
17-03-17 19:04:40.678 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:04:41.068 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:04:41.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:04:41.068 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:41.068 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:41.068 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) start.
17-03-17 19:04:41.078 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:04:41.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:04:41.078 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:41.078 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:41.078 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) start.
17-03-17 19:04:41.268 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37079 783
17-03-17 19:04:41.418 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:04:41.448 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:04:41.448 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:04:41.448 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:41.448 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:04:41.448 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:04:41.448 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:41.458 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:41.458 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:04:41.458 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:41.468 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:04:41.608 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:04:41.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:04:41.608 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:41.608 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:41.608 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) start.
17-03-17 19:04:41.608 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:04:41.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:04:41.608 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:41.608 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:41.608 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 3122434152, 0x0, 418435064) start.
17-03-17 19:04:41.648 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:04:41.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:04:41.798 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-17 19:04:41.798 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:04:41.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37079 150' command took 2 ms to send, 1314 ms to get response, and 1323 ms overall
17-03-17 19:04:41.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:04:41.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.16893536528784. ------
17-03-17 19:04:41.798 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:04:41.798 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17560 mm
17-03-17 19:04:41.798 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:04:41.808 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:04:41.808 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:04:41.808 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:04:41.808 -07 000000424 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 19:04:41.808 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:41.808 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38359, sync = True, waitForSettling = False)
17-03-17 19:04:41.808 -07 000000561 INF: Z Motor: Moving to -0.175596 mm, started at -0.168935 mm, distance = -6.66 um
17-03-17 19:04:41.958 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:04:41.958 -07 000000486 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:04:41.958 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 150 ms overall
17-03-17 19:04:41.958 -07 000000424 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:41.958 -07 000000424 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:04:41.958 -07 000000424 INF: Y Motor: Moving 1338 steps-14
17-03-17 19:04:41.968 -07 000000561 INF: FPGA: Xmit ZDACW 38359\n [Z Motor]
17-03-17 19:04:41.968 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:04:41.978 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:04:41.978 -07 000000561 INF: FPGA: 'ZDACW 38359' command took 0 ms to send, 0 ms to get response, and 166 ms overall
17-03-17 19:04:41.988 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:41.988 -07 000000438 INF: FPGA: Recv ZDACR 38359
17-03-17 19:04:41.998 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:04:41.998 -07 000000561 INF: Z Motor: MoveAbsStepped took 186 ms (did NOT wait for settling yet))
17-03-17 19:04:42.008 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 3122434152, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:04:42.008 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:04:42.008 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:42.008 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 19:04:42.008 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:04:42.008 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:42.018 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:42.018 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:42.018 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 19:04:42.018 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:04:42.158 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:04:42.158 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 352 ms overall
17-03-17 19:04:42.348 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:04:42.348 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 19:04:42.388 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:42.388 -07 000000480 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:04:42.398 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:04:42.398 -07 000000424 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:42.398 -07 000000424 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:04:42.398 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.837 mm, average velocity = 2.141 mm/sec
17-03-17 19:04:43.088 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.983999,
17-03-17 19:04:43.348 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:43.348 -07 000000431 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:04:43.358 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:43.358 -07 000000424 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:43.378 -07 000000424 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:04:43.378 -07 000000424 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:04:43.378 -07 000000424 INF: Y Motor: Moved to 69.0278 after 1569 ms (table move)
17-03-17 19:04:43.378 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175596 mm (DAC = 38359)
17-03-17 19:04:43.378 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:43.378 -07 000000626 INF: FPGA: Recv ZSGSRD 36624
17-03-17 19:04:43.388 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:04:43.388 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:43.388 -07 000000438 INF: FPGA: Recv ZSGSRD 36620
17-03-17 19:04:43.398 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:43.398 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:43.398 -07 000000561 INF: FPGA: Recv ZSGSRD 36620
17-03-17 19:04:43.408 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:43.408 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:43.408 -07 000000551 INF: FPGA: Recv ZSGSRD 36624
17-03-17 19:04:43.418 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:43.418 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:43.418 -07 000000626 INF: FPGA: Recv ZSGSRD 36617
17-03-17 19:04:43.428 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:43.428 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:43.428 -07 000000424 INF: FPGA: Recv ZSGSRD 36625
17-03-17 19:04:43.438 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:43.438 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:43.438 -07 000000561 INF: FPGA: Recv ZSGSRD 36625
17-03-17 19:04:43.448 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:43.448 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:43.448 -07 000000486 INF: FPGA: Recv ZSGSRD 36621
17-03-17 19:04:43.458 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:43.458 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:43.458 -07 000000480 INF: FPGA: Recv ZSGSRD 36622
17-03-17 19:04:43.468 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:43.468 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:43.468 -07 000000438 INF: FPGA: Recv ZSGSRD 36620
17-03-17 19:04:43.478 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:43.478 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:43.478 -07 000000561 INF: FPGA: Recv ZPIEZORD 32894
17-03-17 19:04:43.488 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:43.488 -07 000000502 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.853 V. Piezo Error = -8.3 V.
17-03-17 19:04:43.488 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36622 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36622 (-174.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36617 (-174.7 uncal um), Max = 36625 (-174.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:04:43.488 -07 000000502 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36622, posNoise = 3, negNoise = 5
17-03-17 19:04:43.488 -07 000000502 INF: Z Motor: After move to -0.175596, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:43.488 -07 000000502 INF: Z Motor: Settle wait time = 1572 ms, measure time = 105 ms (allowed 150 ms), total time = 1677 ms
17-03-17 19:04:43.488 -07 000000502 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:04:43.538 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1730 ms
17-03-17 19:04:43.538 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:04:43.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:43.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:43.538 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:43.538 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:43.538 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:04:43.538 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:43.538 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:04:43.538 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:04:43.548 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:04:43.548 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:04:43.558 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:04:43.558 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:04:43.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:04:43.598 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:04:43.798 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:04:43.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:04:43.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:04:43.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:04:43.838 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:04:43.838 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:04:43.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 19:04:43.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:04:43.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:43.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:04:43.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:04:44.038 -07 000000480 INF: Autofocus start
17-03-17 19:04:44.038 -07 000000480 INF: MeasureProfile start
17-03-17 19:04:44.048 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:04:44.048 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:04:44.048 -07 000000480 INF: MeasureProfile done
17-03-17 19:04:44.048 -07 000000480 INF: X=-32  Z correction [um]=-0.2344
17-03-17 19:04:44.048 -07 000000480 INF: Autofocus finished
17-03-17 19:04:44.058 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:04:44.058 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:04:44.258 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:04:44.258 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:04:44.258 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.175590849066705. ----------
17-03-17 19:04:44.258 -07 000000610 INF: Cycle	21	Tile	12	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:04:44.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36820, sync = True, waitForSettling = True)
17-03-17 19:04:44.268 -07 000000610 INF: Z Motor: Moving to -0.168551 mm, started at -0.175591 mm, distance = 7.04 um
17-03-17 19:04:44.268 -07 000000610 INF: FPGA: Xmit ZDACW 36820\n [Z Motor]
17-03-17 19:04:44.268 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:04:44.278 -07 000000610 INF: FPGA: 'ZDACW 36820' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:04:44.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:44.278 -07 000000551 INF: FPGA: Recv ZDACR 36820
17-03-17 19:04:44.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:44.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:04:44.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:44.438 -07 000000626 INF: FPGA: Recv ZSGSRD 35531
17-03-17 19:04:44.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:44.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:44.448 -07 000000561 INF: FPGA: Recv ZSGSRD 35532
17-03-17 19:04:44.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:44.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:44.458 -07 000000431 INF: FPGA: Recv ZSGSRD 35529
17-03-17 19:04:44.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:44.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:44.468 -07 000000561 INF: FPGA: Recv ZSGSRD 35522
17-03-17 19:04:44.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:44.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:44.478 -07 000000626 INF: FPGA: Recv ZSGSRD 35531
17-03-17 19:04:44.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:44.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:44.488 -07 000000438 INF: FPGA: Recv ZSGSRD 35526
17-03-17 19:04:44.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:44.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:44.498 -07 000000626 INF: FPGA: Recv ZSGSRD 35527
17-03-17 19:04:44.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:44.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:44.508 -07 000000438 INF: FPGA: Recv ZSGSRD 35531
17-03-17 19:04:44.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:44.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:44.518 -07 000000551 INF: FPGA: Recv ZSGSRD 35530
17-03-17 19:04:44.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:44.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:44.528 -07 000000561 INF: FPGA: Recv ZSGSRD 35533
17-03-17 19:04:44.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:44.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:44.538 -07 000000438 INF: FPGA: Recv ZPIEZORD 31446
17-03-17 19:04:44.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:44.548 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.0 V.
17-03-17 19:04:44.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35529 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35530 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35522 (-167.7 uncal um), Max = 35533 (-167.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:04:44.548 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35529, posNoise = 4, negNoise = 7
17-03-17 19:04:44.548 -07 000000610 INF: Z Motor: After move to -0.168551, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:44.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:04:44.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:44.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:44.548 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:44.548 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:44.548 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:04:44.548 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:44.548 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:04:44.548 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:04:44.548 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:04:44.548 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:04:44.548 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:04:44.548 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:04:44.558 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:04:44.558 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:04:44.558 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:04:44.558 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:04:44.568 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:04:44.568 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:04:44.568 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:04:44.568 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:04:44.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36997 150\n [Camera]
17-03-17 19:04:44.768 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:04:45.168 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:04:45.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:04:45.168 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:45.168 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:04:45.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:04:45.168 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:45.168 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:45.168 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 19:04:45.178 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:45.178 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:04:45.358 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36997 783
17-03-17 19:04:45.508 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:04:45.548 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 19:04:45.548 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 19:04:45.548 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:45.548 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:04:45.548 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:04:45.548 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:45.548 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:45.548 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:04:45.548 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:04:45.558 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:04:45.698 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:04:45.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:04:45.698 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:45.698 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:04:45.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:04:45.698 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:45.818 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:45.818 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:04:45.818 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:45.818 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) start.
17-03-17 19:04:45.888 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-17 19:04:45.888 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:04:45.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36997 150' command took 2 ms to send, 1316 ms to get response, and 1323 ms overall
17-03-17 19:04:45.888 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168875
17-03-17 19:04:45.888 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16887 mm
17-03-17 19:04:45.888 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:04:45.898 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:04:45.898 -07 000000480 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 19:04:45.898 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36891, sync = True, waitForSettling = False)
17-03-17 19:04:45.898 -07 000000431 INF: Z Motor: Moving to -0.168876 mm, started at -0.168569 mm, distance = -0.31 um
17-03-17 19:04:45.898 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:45.898 -07 000000424 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:04:45.908 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:04:45.908 -07 000000480 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:45.908 -07 000000480 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:04:45.908 -07 000000480 INF: Y Motor: Moving 1352 steps-30
17-03-17 19:04:45.908 -07 000000431 INF: FPGA: Xmit ZDACW 36891\n [Z Motor]
17-03-17 19:04:45.908 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:04:45.918 -07 000000431 INF: FPGA: 'ZDACW 36891' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:04:45.918 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:45.918 -07 000000502 INF: FPGA: Recv ZDACR 36891
17-03-17 19:04:45.928 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:45.928 -07 000000431 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-17 19:04:45.928 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:04:46.198 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:04:46.198 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:04:46.198 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:46.198 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:04:46.198 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:04:46.198 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:46.198 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:04:46.198 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 503 ms.
17-03-17 19:04:46.208 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:04:46.208 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 19:04:46.298 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 19:04:46.298 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 19:04:46.338 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:46.338 -07 000000431 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:04:46.348 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:04:46.348 -07 000000480 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:46.348 -07 000000480 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:04:46.348 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.123 mm/sec
17-03-17 19:04:46.648 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:04:46.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:04:47.298 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:47.298 -07 000000502 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:04:47.308 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:47.308 -07 000000480 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:47.328 -07 000000480 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:04:47.328 -07 000000480 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:04:47.328 -07 000000480 INF: Y Motor: Moved to 69.8638 after 1430 ms (table move)
17-03-17 19:04:47.328 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168876 mm (DAC = 36891)
17-03-17 19:04:47.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.328 -07 000000431 INF: FPGA: Recv ZSGSRD 35574
17-03-17 19:04:47.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:04:47.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.338 -07 000000502 INF: FPGA: Recv ZSGSRD 35577
17-03-17 19:04:47.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.348 -07 000000424 INF: FPGA: Recv ZSGSRD 35581
17-03-17 19:04:47.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.358 -07 000000438 INF: FPGA: Recv ZSGSRD 35584
17-03-17 19:04:47.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.368 -07 000000438 INF: FPGA: Recv ZSGSRD 35570
17-03-17 19:04:47.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.378 -07 000000486 INF: FPGA: Recv ZSGSRD 35580
17-03-17 19:04:47.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.388 -07 000000561 INF: FPGA: Recv ZSGSRD 35576
17-03-17 19:04:47.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.398 -07 000000551 INF: FPGA: Recv ZSGSRD 35577
17-03-17 19:04:47.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.408 -07 000000438 INF: FPGA: Recv ZSGSRD 35580
17-03-17 19:04:47.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.418 -07 000000480 INF: FPGA: Recv ZSGSRD 35571
17-03-17 19:04:47.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:47.428 -07 000000480 INF: FPGA: Recv ZPIEZORD 31464
17-03-17 19:04:47.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.438 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.629 V. Piezo Error = -9.1 V.
17-03-17 19:04:47.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35577 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35577 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35570 (-168.0 uncal um), Max = 35584 (-168.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:04:47.438 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35577, posNoise = 7, negNoise = 7
17-03-17 19:04:47.438 -07 000000610 INF: Z Motor: After move to -0.168876, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:47.438 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 107 ms (allowed 150 ms), total time = 1539 ms
17-03-17 19:04:47.438 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:04:47.488 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 19:04:47.488 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:04:47.488 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.168877547378565. ----------
17-03-17 19:04:47.488 -07 000000610 INF: Cycle	21	Tile	13	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:04:47.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36714, sync = True, waitForSettling = True)
17-03-17 19:04:47.488 -07 000000610 INF: Z Motor: Moving to -0.168066 mm, started at -0.168878 mm, distance = 0.81 um
17-03-17 19:04:47.488 -07 000000610 INF: FPGA: Xmit ZDACW 36714\n [Z Motor]
17-03-17 19:04:47.488 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:04:47.498 -07 000000610 INF: FPGA: 'ZDACW 36714' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:04:47.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:47.498 -07 000000561 INF: FPGA: Recv ZDACR 36714
17-03-17 19:04:47.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:04:47.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.658 -07 000000424 INF: FPGA: Recv ZSGSRD 35459
17-03-17 19:04:47.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.668 -07 000000486 INF: FPGA: Recv ZSGSRD 35450
17-03-17 19:04:47.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.678 -07 000000626 INF: FPGA: Recv ZSGSRD 35453
17-03-17 19:04:47.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.688 -07 000000480 INF: FPGA: Recv ZSGSRD 35455
17-03-17 19:04:47.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.698 -07 000000431 INF: FPGA: Recv ZSGSRD 35451
17-03-17 19:04:47.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.708 -07 000000480 INF: FPGA: Recv ZSGSRD 35446
17-03-17 19:04:47.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.718 -07 000000486 INF: FPGA: Recv ZSGSRD 35444
17-03-17 19:04:47.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.728 -07 000000486 INF: FPGA: Recv ZSGSRD 35452
17-03-17 19:04:47.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.738 -07 000000561 INF: FPGA: Recv ZSGSRD 35460
17-03-17 19:04:47.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:47.748 -07 000000486 INF: FPGA: Recv ZSGSRD 35454
17-03-17 19:04:47.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:47.758 -07 000000480 INF: FPGA: Recv ZPIEZORD 31316
17-03-17 19:04:47.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:47.768 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.602 V. Piezo Error = -9.1 V.
17-03-17 19:04:47.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35452 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35452 (-167.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35444 (-167.2 uncal um), Max = 35460 (-167.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:04:47.768 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35452, posNoise = 8, negNoise = 8
17-03-17 19:04:47.768 -07 000000610 INF: Z Motor: After move to -0.168066, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:47.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:04:47.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:47.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:47.768 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:47.768 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:04:47.768 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:04:47.768 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:47.768 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:04:47.768 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:47.768 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:04:47.768 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:04:47.768 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:04:47.768 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:04:47.778 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:04:47.778 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:04:47.778 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:04:47.778 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:04:47.788 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:04:47.788 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:04:47.788 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:04:47.788 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:04:47.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36891 150\n [Camera]
17-03-17 19:04:47.998 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:04:48.388 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:04:48.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:04:48.398 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:48.398 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:04:48.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:04:48.398 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:48.398 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:48.398 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:04:48.398 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:48.398 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:04:48.448 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.997626,
17-03-17 19:04:48.588 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36891 783
17-03-17 19:04:48.738 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:04:48.768 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 19:04:48.768 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 19:04:48.768 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:48.778 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:04:48.778 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:04:48.778 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:48.778 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:48.778 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:04:48.778 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:48.788 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:04:48.928 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:04:48.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:04:48.928 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:48.928 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:48.928 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1081577064, 0x0, 391868352) start.
17-03-17 19:04:48.928 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:04:48.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:04:48.928 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:48.928 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:48.928 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1116999328, 0x0, 418435064) start.
17-03-17 19:04:49.118 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-17 19:04:49.118 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:04:49.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36891 150' command took 2 ms to send, 1318 ms to get response, and 1327 ms overall
17-03-17 19:04:49.128 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.168469
17-03-17 19:04:49.128 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16847 mm
17-03-17 19:04:49.128 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:04:49.128 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:04:49.128 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 36802, sync = True, waitForSettling = False)
17-03-17 19:04:49.128 -07 000000486 INF: Z Motor: Moving to -0.168469 mm, started at -0.168075 mm, distance = -0.39 um
17-03-17 19:04:49.128 -07 000000486 INF: FPGA: Xmit ZDACW 36802\n [Z Motor]
17-03-17 19:04:49.128 -07 000000424 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 19:04:49.128 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 19:04:49.138 -07 000000486 INF: FPGA: 'ZDACW 36802' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:04:49.138 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:49.138 -07 000000433 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:04:49.148 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:04:49.148 -07 000000424 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:49.148 -07 000000424 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:04:49.148 -07 000000424 INF: Y Motor: Moving 1342 steps-18
17-03-17 19:04:49.148 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:49.148 -07 000000431 INF: FPGA: Recv ZDACR 36802
17-03-17 19:04:49.158 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:04:49.158 -07 000000486 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 19:04:49.158 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:04:49.308 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1116999328, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:04:49.308 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:04:49.308 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:49.318 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1081577064, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:04:49.318 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:04:49.318 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:49.318 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:49.318 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:49.318 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:04:49.328 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:04:49.528 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 19:04:49.528 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:04:49.568 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:49.568 -07 000000561 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:04:49.578 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:04:49.578 -07 000000424 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:49.578 -07 000000424 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:04:49.578 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.162 mm/sec
17-03-17 19:04:50.528 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:50.528 -07 000000569 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:04:50.538 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:50.538 -07 000000424 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:50.558 -07 000000424 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:04:50.558 -07 000000424 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:04:50.558 -07 000000424 INF: Y Motor: Moved to 70.6890 after 1426 ms (table move)
17-03-17 19:04:50.558 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168469 mm (DAC = 36802)
17-03-17 19:04:50.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.558 -07 000000438 INF: FPGA: Recv ZSGSRD 35512
17-03-17 19:04:50.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:04:50.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.568 -07 000000480 INF: FPGA: Recv ZSGSRD 35509
17-03-17 19:04:50.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.578 -07 000000486 INF: FPGA: Recv ZSGSRD 35508
17-03-17 19:04:50.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.588 -07 000000424 INF: FPGA: Recv ZSGSRD 35512
17-03-17 19:04:50.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.598 -07 000000486 INF: FPGA: Recv ZSGSRD 35525
17-03-17 19:04:50.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.608 -07 000000424 INF: FPGA: Recv ZSGSRD 35518
17-03-17 19:04:50.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.618 -07 000000486 INF: FPGA: Recv ZSGSRD 35511
17-03-17 19:04:50.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.628 -07 000000424 INF: FPGA: Recv ZSGSRD 35513
17-03-17 19:04:50.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.638 -07 000000486 INF: FPGA: Recv ZSGSRD 35514
17-03-17 19:04:50.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.648 -07 000000424 INF: FPGA: Recv ZSGSRD 35516
17-03-17 19:04:50.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:50.658 -07 000000415 INF: FPGA: Recv ZPIEZORD 31410
17-03-17 19:04:50.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.668 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -9.1 V.
17-03-17 19:04:50.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35514 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35512 (-167.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35508 (-167.6 uncal um), Max = 35525 (-167.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:04:50.668 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35514, posNoise = 11, negNoise = 6
17-03-17 19:04:50.668 -07 000000610 INF: Z Motor: After move to -0.168469, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:50.668 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 108 ms (allowed 150 ms), total time = 1536 ms
17-03-17 19:04:50.668 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:04:50.718 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 19:04:50.718 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:04:50.718 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.168472822013634. ----------
17-03-17 19:04:50.718 -07 000000610 INF: Cycle	21	Tile	14	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:04:50.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36625, sync = True, waitForSettling = True)
17-03-17 19:04:50.718 -07 000000610 INF: Z Motor: Moving to -0.167659 mm, started at -0.168473 mm, distance = 0.81 um
17-03-17 19:04:50.718 -07 000000610 INF: FPGA: Xmit ZDACW 36625\n [Z Motor]
17-03-17 19:04:50.718 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:04:50.728 -07 000000610 INF: FPGA: 'ZDACW 36625' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:04:50.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:50.728 -07 000000502 INF: FPGA: Recv ZDACR 36625
17-03-17 19:04:50.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:04:50.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.888 -07 000000569 INF: FPGA: Recv ZSGSRD 35385
17-03-17 19:04:50.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:50.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.898 -07 000000480 INF: FPGA: Recv ZSGSRD 35389
17-03-17 19:04:50.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.908 -07 000000569 INF: FPGA: Recv ZSGSRD 35392
17-03-17 19:04:50.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.918 -07 000000502 INF: FPGA: Recv ZSGSRD 35388
17-03-17 19:04:50.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.928 -07 000000569 INF: FPGA: Recv ZSGSRD 35390
17-03-17 19:04:50.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.938 -07 000000480 INF: FPGA: Recv ZSGSRD 35388
17-03-17 19:04:50.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.948 -07 000000569 INF: FPGA: Recv ZSGSRD 35387
17-03-17 19:04:50.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.958 -07 000000415 INF: FPGA: Recv ZSGSRD 35389
17-03-17 19:04:50.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:04:50.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.968 -07 000000424 INF: FPGA: Recv ZSGSRD 35383
17-03-17 19:04:50.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:50.978 -07 000000551 INF: FPGA: Recv ZSGSRD 35393
17-03-17 19:04:50.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:50.988 -07 000000424 INF: FPGA: Recv ZPIEZORD 31272
17-03-17 19:04:50.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:50.998 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.589 V. Piezo Error = -9.1 V.
17-03-17 19:04:50.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35388 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35388 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35383 (-166.8 uncal um), Max = 35393 (-166.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:04:50.998 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35388, posNoise = 5, negNoise = 5
17-03-17 19:04:50.998 -07 000000610 INF: Z Motor: After move to -0.167659, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:50.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:04:50.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:50.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:50.998 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:50.998 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:50.998 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:04:50.998 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:50.998 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:04:50.998 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:04:50.998 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:04:50.998 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:04:50.998 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:04:50.998 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:04:50.998 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:04:50.998 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:04:50.998 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:04:50.998 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:04:51.018 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:04:51.018 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:04:51.018 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:04:51.018 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:04:51.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36802 150\n [Camera]
17-03-17 19:04:51.218 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:04:51.618 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:04:51.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:04:51.618 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:51.618 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:51.618 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1152421592, 0x0, 391868352) start.
17-03-17 19:04:51.628 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:04:51.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:04:51.628 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:51.628 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:51.628 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:04:51.648 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:04:51.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:04:51.818 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36802 785
17-03-17 19:04:51.958 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:04:51.998 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1152421592, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:04:51.998 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:04:51.998 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:51.998 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:04:51.998 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:04:51.998 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:52.008 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:04:52.008 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:04:52.008 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:52.018 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:04:52.158 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:04:52.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:04:52.158 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:52.268 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:04:52.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:04:52.268 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:52.278 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:52.278 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:04:52.278 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:52.278 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 19:04:52.348 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-17 19:04:52.348 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:04:52.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36802 150' command took 2 ms to send, 1313 ms to get response, and 1323 ms overall
17-03-17 19:04:52.348 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.168310
17-03-17 19:04:52.348 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16831 mm
17-03-17 19:04:52.348 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:04:52.348 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:04:52.348 -07 000000431 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 19:04:52.348 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:52.348 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 36767, sync = True, waitForSettling = False)
17-03-17 19:04:52.348 -07 000000424 INF: Z Motor: Moving to -0.168309 mm, started at -0.167663 mm, distance = -0.65 um
17-03-17 19:04:52.358 -07 000000424 INF: FPGA: Xmit ZDACW 36767\n [Z Motor]
17-03-17 19:04:52.358 -07 000000480 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:04:52.358 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:04:52.358 -07 000000431 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:52.358 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 19:04:52.358 -07 000000431 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:04:52.358 -07 000000431 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:04:52.368 -07 000000424 INF: FPGA: 'ZDACW 36767' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:04:52.368 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:52.368 -07 000000438 INF: FPGA: Recv ZDACR 36767
17-03-17 19:04:52.378 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:04:52.378 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:52.378 -07 000000424 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 19:04:52.658 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:04:52.658 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:04:52.658 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:52.658 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:04:52.658 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:04:52.658 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:52.668 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:52.668 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 19:04:52.668 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:52.678 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:04:52.748 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:04:52.748 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 19:04:52.788 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:52.788 -07 000000433 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:04:52.798 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:04:52.798 -07 000000431 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:52.798 -07 000000431 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:04:52.798 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.158 mm/sec
17-03-17 19:04:53.748 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:53.748 -07 000000415 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:04:53.758 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:53.758 -07 000000431 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:53.778 -07 000000431 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:04:53.778 -07 000000431 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:04:53.778 -07 000000431 INF: Y Motor: Moved to 71.5195 after 1423 ms (table move)
17-03-17 19:04:53.778 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168309 mm (DAC = 36767)
17-03-17 19:04:53.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:53.778 -07 000000433 INF: FPGA: Recv ZSGSRD 35487
17-03-17 19:04:53.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:04:53.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:53.788 -07 000000438 INF: FPGA: Recv ZSGSRD 35483
17-03-17 19:04:53.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:53.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:53.808 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.004458,
17-03-17 19:04:53.808 -07 000000415 INF: FPGA: Recv ZSGSRD 35494
17-03-17 19:04:53.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:04:53.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:53.838 -07 000000551 INF: FPGA: Recv ZSGSRD 35498
17-03-17 19:04:53.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:04:53.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:53.848 -07 000000415 INF: FPGA: Recv ZSGSRD 35489
17-03-17 19:04:53.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:53.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:53.878 -07 000000424 INF: FPGA: Recv ZSGSRD 35487
17-03-17 19:04:53.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:04:53.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:53.888 -07 000000415 INF: FPGA: Recv ZSGSRD 35489
17-03-17 19:04:53.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:53.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:53.898 -07 000000438 INF: FPGA: Recv ZSGSRD 35492
17-03-17 19:04:53.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:53.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:53.908 -07 000000431 INF: FPGA: Recv ZSGSRD 35496
17-03-17 19:04:53.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:53.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:53.918 -07 000000415 INF: FPGA: Recv ZSGSRD 35492
17-03-17 19:04:53.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:53.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:53.928 -07 000000433 INF: FPGA: Recv ZPIEZORD 31400
17-03-17 19:04:53.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:53.938 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.610 V. Piezo Error = -9.0 V.
17-03-17 19:04:53.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35491 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35490 (-167.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35483 (-167.4 uncal um), Max = 35498 (-167.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:04:53.938 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35491, posNoise = 7, negNoise = 8
17-03-17 19:04:53.938 -07 000000610 INF: Z Motor: After move to -0.168309, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:53.938 -07 000000610 INF: Z Motor: Settle wait time = 1425 ms, measure time = 158 ms (allowed 150 ms), total time = 1583 ms
17-03-17 19:04:53.938 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 158 ms, longer than max expected time of 150 ms
17-03-17 19:04:53.938 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 19:04:53.938 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:04:53.938 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.168325065134373. ----------
17-03-17 19:04:53.938 -07 000000610 INF: Cycle	21	Tile	15	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:04:53.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36591, sync = True, waitForSettling = True)
17-03-17 19:04:53.938 -07 000000610 INF: Z Motor: Moving to -0.167503 mm, started at -0.168325 mm, distance = 0.82 um
17-03-17 19:04:53.938 -07 000000610 INF: FPGA: Xmit ZDACW 36591\n [Z Motor]
17-03-17 19:04:53.948 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:04:53.948 -07 000000610 INF: FPGA: 'ZDACW 36591' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:04:53.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:53.948 -07 000000626 INF: FPGA: Recv ZDACR 36591
17-03-17 19:04:53.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:53.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:04:54.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:54.108 -07 000000415 INF: FPGA: Recv ZSGSRD 35361
17-03-17 19:04:54.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:54.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:54.118 -07 000000480 INF: FPGA: Recv ZSGSRD 35366
17-03-17 19:04:54.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:54.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:54.128 -07 000000551 INF: FPGA: Recv ZSGSRD 35362
17-03-17 19:04:54.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:54.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:54.138 -07 000000438 INF: FPGA: Recv ZSGSRD 35369
17-03-17 19:04:54.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:54.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:54.148 -07 000000415 INF: FPGA: Recv ZSGSRD 35369
17-03-17 19:04:54.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:54.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:54.158 -07 000000438 INF: FPGA: Recv ZSGSRD 35363
17-03-17 19:04:54.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:54.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:54.168 -07 000000415 INF: FPGA: Recv ZSGSRD 35364
17-03-17 19:04:54.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:54.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:54.178 -07 000000424 INF: FPGA: Recv ZSGSRD 35364
17-03-17 19:04:54.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:54.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:54.188 -07 000000438 INF: FPGA: Recv ZSGSRD 35358
17-03-17 19:04:54.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:54.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:54.198 -07 000000415 INF: FPGA: Recv ZSGSRD 35360
17-03-17 19:04:54.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:54.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:54.208 -07 000000569 INF: FPGA: Recv ZPIEZORD 31225
17-03-17 19:04:54.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:54.218 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -9.1 V.
17-03-17 19:04:54.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35364 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35364 (-166.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35358 (-166.6 uncal um), Max = 35369 (-166.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:04:54.218 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35364, posNoise = 5, negNoise = 6
17-03-17 19:04:54.218 -07 000000610 INF: Z Motor: After move to -0.167503, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:54.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:04:54.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:54.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:54.218 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:54.218 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:54.218 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:04:54.218 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:54.218 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:04:54.218 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:04:54.218 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:04:54.218 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:04:54.218 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:04:54.218 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:04:54.228 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:04:54.228 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:04:54.228 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:04:54.228 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:04:54.238 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:04:54.238 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:04:54.238 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:04:54.238 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:04:54.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36767 150\n [Camera]
17-03-17 19:04:54.438 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:04:54.838 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:04:54.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:04:54.848 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:04:54.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:04:54.848 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:54.848 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:54.848 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:54.848 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 19:04:54.848 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:54.848 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:04:55.038 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36767 783
17-03-17 19:04:55.178 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:04:55.228 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:04:55.228 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:04:55.228 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:55.228 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:04:55.228 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:04:55.228 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:55.238 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:04:55.238 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:04:55.238 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:04:55.238 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:04:55.378 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:04:55.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:04:55.378 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:55.478 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:04:55.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:04:55.478 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:55.488 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:55.488 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:04:55.488 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:55.488 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 19:04:55.568 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-17 19:04:55.568 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:04:55.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36767 150' command took 2 ms to send, 1313 ms to get response, and 1323 ms overall
17-03-17 19:04:55.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:04:55.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.167509190192369. ------
17-03-17 19:04:55.568 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:04:55.568 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17340 mm
17-03-17 19:04:55.568 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:04:55.578 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37880, sync = True, waitForSettling = False)
17-03-17 19:04:55.578 -07 000000626 INF: Z Motor: Moving to -0.173404 mm, started at -0.167509 mm, distance = -5.89 um
17-03-17 19:04:55.578 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:04:55.578 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:04:55.578 -07 000000626 INF: FPGA: Xmit ZDACW 37880\n [Z Motor]
17-03-17 19:04:55.578 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:04:55.578 -07 000000486 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 19:04:55.578 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 19:04:55.588 -07 000000626 INF: FPGA: 'ZDACW 37880' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:04:55.588 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:55.588 -07 000000502 INF: FPGA: Recv ZDACR 37880
17-03-17 19:04:55.598 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:55.598 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:55.598 -07 000000626 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-17 19:04:55.598 -07 000000569 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:04:55.608 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:04:55.608 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:04:55.608 -07 000000486 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:55.608 -07 000000486 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:04:55.608 -07 000000486 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:04:55.618 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:04:55.808 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:04:55.808 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 230 ms overall
17-03-17 19:04:55.858 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:04:55.858 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:04:55.858 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:55.858 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:04:55.858 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:04:55.858 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:55.868 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:55.868 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:55.868 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 491 ms.
17-03-17 19:04:55.878 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:04:55.988 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 19:04:55.988 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 19:04:56.028 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:56.028 -07 000000424 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:04:56.038 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:04:56.038 -07 000000486 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:56.038 -07 000000486 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:04:56.038 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.843 mm, average velocity = 2.196 mm/sec
17-03-17 19:04:56.648 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:04:56.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:04:56.988 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:56.988 -07 000000502 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:04:56.998 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:56.998 -07 000000486 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:57.018 -07 000000486 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:04:57.018 -07 000000486 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:04:57.018 -07 000000486 INF: Y Motor: Moved to 72.3501 after 1438 ms (table move)
17-03-17 19:04:57.018 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173404 mm (DAC = 37880)
17-03-17 19:04:57.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:57.018 -07 000000424 INF: FPGA: Recv ZSGSRD 36280
17-03-17 19:04:57.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:04:57.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:57.028 -07 000000433 INF: FPGA: Recv ZSGSRD 36278
17-03-17 19:04:57.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:57.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:57.038 -07 000000623 INF: FPGA: Recv ZSGSRD 36278
17-03-17 19:04:57.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:57.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:57.048 -07 000000424 INF: FPGA: Recv ZSGSRD 36289
17-03-17 19:04:57.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:57.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:57.058 -07 000000623 INF: FPGA: Recv ZSGSRD 36287
17-03-17 19:04:57.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:57.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:57.068 -07 000000424 INF: FPGA: Recv ZSGSRD 36288
17-03-17 19:04:57.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:57.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:57.078 -07 000000502 INF: FPGA: Recv ZSGSRD 36281
17-03-17 19:04:57.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:57.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:57.088 -07 000000541 INF: FPGA: Recv ZSGSRD 36281
17-03-17 19:04:57.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:57.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:57.098 -07 000000433 INF: FPGA: Recv ZSGSRD 36281
17-03-17 19:04:57.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:57.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:57.108 -07 000000415 INF: FPGA: Recv ZSGSRD 36280
17-03-17 19:04:57.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:57.118 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:57.118 -07 000000433 INF: FPGA: Recv ZPIEZORD 32450
17-03-17 19:04:57.128 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:57.128 -07 000000431 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.780 V. Piezo Error = -8.5 V.
17-03-17 19:04:57.128 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36282 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36281 (-172.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36278 (-172.5 uncal um), Max = 36289 (-172.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:04:57.128 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36282, posNoise = 7, negNoise = 4
17-03-17 19:04:57.128 -07 000000431 INF: Z Motor: After move to -0.173404, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:57.128 -07 000000431 INF: Z Motor: Settle wait time = 1443 ms, measure time = 106 ms (allowed 150 ms), total time = 1549 ms
17-03-17 19:04:57.128 -07 000000431 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:04:57.178 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 19:04:57.178 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:04:57.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:57.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:57.178 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:57.178 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:04:57.178 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:57.178 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:57.178 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:04:57.178 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:04:57.188 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:04:57.188 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:04:57.198 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:04:57.198 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:04:57.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:04:57.248 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:04:57.438 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:04:57.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:04:57.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:04:57.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 19:04:57.478 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:04:57.488 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 19:04:57.488 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 19:04:57.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:04:57.568 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:57.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:04:57.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:04:57.588 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:04:57.588 -07 000000433 INF: Autofocus start
17-03-17 19:04:57.588 -07 000000433 INF: MeasureProfile start
17-03-17 19:04:57.588 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:04:57.598 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:04:57.598 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:04:57.598 -07 000000433 INF: MeasureProfile done
17-03-17 19:04:57.598 -07 000000433 INF: X=64  Z correction [um]=0.2557664
17-03-17 19:04:57.598 -07 000000433 INF: Autofocus finished
17-03-17 19:04:57.798 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:04:57.798 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:04:57.798 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.173406616938506. ----------
17-03-17 19:04:57.798 -07 000000610 INF: Cycle	21	Tile	16	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:04:57.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36448, sync = True, waitForSettling = True)
17-03-17 19:04:57.808 -07 000000610 INF: Z Motor: Moving to -0.166848 mm, started at -0.173407 mm, distance = 6.56 um
17-03-17 19:04:57.808 -07 000000610 INF: FPGA: Xmit ZDACW 36448\n [Z Motor]
17-03-17 19:04:57.808 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:04:57.818 -07 000000610 INF: FPGA: 'ZDACW 36448' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:04:57.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:57.818 -07 000000486 INF: FPGA: Recv ZDACR 36448
17-03-17 19:04:57.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:57.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:04:57.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:57.978 -07 000000431 INF: FPGA: Recv ZSGSRD 35263
17-03-17 19:04:57.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:04:57.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:57.988 -07 000000433 INF: FPGA: Recv ZSGSRD 35260
17-03-17 19:04:57.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:57.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:57.998 -07 000000415 INF: FPGA: Recv ZSGSRD 35264
17-03-17 19:04:58.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:58.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:58.008 -07 000000623 INF: FPGA: Recv ZSGSRD 35262
17-03-17 19:04:58.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:58.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:58.018 -07 000000424 INF: FPGA: Recv ZSGSRD 35269
17-03-17 19:04:58.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:58.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:58.028 -07 000000433 INF: FPGA: Recv ZSGSRD 35258
17-03-17 19:04:58.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:58.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:58.038 -07 000000541 INF: FPGA: Recv ZSGSRD 35261
17-03-17 19:04:58.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:58.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:58.048 -07 000000502 INF: FPGA: Recv ZSGSRD 35268
17-03-17 19:04:58.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:58.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:58.058 -07 000000424 INF: FPGA: Recv ZSGSRD 35261
17-03-17 19:04:58.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:58.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:04:58.068 -07 000000433 INF: FPGA: Recv ZSGSRD 35263
17-03-17 19:04:58.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:58.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:04:58.078 -07 000000415 INF: FPGA: Recv ZPIEZORD 31096
17-03-17 19:04:58.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:04:58.088 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.562 V. Piezo Error = -9.2 V.
17-03-17 19:04:58.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35263 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35262 (-166.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35258 (-166.0 uncal um), Max = 35269 (-166.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:04:58.088 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35263, posNoise = 6, negNoise = 5
17-03-17 19:04:58.088 -07 000000610 INF: Z Motor: After move to -0.166848, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:04:58.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:04:58.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:04:58.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:04:58.088 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:04:58.088 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:04:58.088 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:04:58.088 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:04:58.088 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:04:58.088 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:04:58.088 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:04:58.088 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:04:58.088 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:04:58.088 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:04:58.098 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:04:58.098 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:04:58.098 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:04:58.098 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:04:58.108 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:04:58.108 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:04:58.108 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:04:58.108 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:04:58.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36625 150\n [Camera]
17-03-17 19:04:58.318 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 19:04:58.718 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:04:58.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:04:58.718 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:58.718 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:58.718 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:04:58.718 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:04:58.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:04:58.728 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:58.728 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:58.728 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:04:58.908 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36625 783
17-03-17 19:04:59.058 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:04:59.098 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 19:04:59.098 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 19:04:59.098 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:59.098 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 19:04:59.098 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 19:04:59.098 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:59.098 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:59.098 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:59.098 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:04:59.108 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:04:59.198 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.018051,
17-03-17 19:04:59.248 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:04:59.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:04:59.248 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:04:59.248 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:04:59.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:04:59.248 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:04:59.248 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1081577064, 0x0, 391868352) start.
17-03-17 19:04:59.248 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:04:59.248 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:04:59.248 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1116999328, 0x0, 418435064) start.
17-03-17 19:04:59.438 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-17 19:04:59.438 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:04:59.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36625 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-17 19:04:59.438 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167416
17-03-17 19:04:59.438 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16742 mm
17-03-17 19:04:59.438 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:04:59.448 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:04:59.448 -07 000000541 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 19:04:59.448 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:59.448 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 36572, sync = True, waitForSettling = False)
17-03-17 19:04:59.448 -07 000000486 INF: Z Motor: Moving to -0.167416 mm, started at -0.166860 mm, distance = -0.56 um
17-03-17 19:04:59.448 -07 000000415 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:04:59.558 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 115 ms overall
17-03-17 19:04:59.558 -07 000000541 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:59.558 -07 000000541 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:04:59.558 -07 000000541 INF: Y Motor: Moving 1348 steps-26
17-03-17 19:04:59.558 -07 000000486 INF: FPGA: Xmit ZDACW 36572\n [Z Motor]
17-03-17 19:04:59.558 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 19:04:59.568 -07 000000486 INF: FPGA: 'ZDACW 36572' command took 1 ms to send, 0 ms to get response, and 117 ms overall
17-03-17 19:04:59.568 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:04:59.578 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:04:59.578 -07 000000433 INF: FPGA: Recv ZDACR 36572
17-03-17 19:04:59.588 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:04:59.588 -07 000000486 INF: Z Motor: MoveAbsStepped took 138 ms (did NOT wait for settling yet))
17-03-17 19:04:59.638 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1116999328, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:04:59.638 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:04:59.638 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:59.638 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1081577064, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:04:59.638 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:04:59.638 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:04:59.638 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:04:59.638 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:04:59.638 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:04:59.648 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:04:59.938 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 19:04:59.938 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 19:04:59.978 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:04:59.978 -07 000000433 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:04:59.988 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:04:59.988 -07 000000541 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:04:59.988 -07 000000541 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 19:04:59.988 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.843 mm, average velocity = 2.206 mm/sec
17-03-17 19:05:00.938 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:00.938 -07 000000415 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:05:00.948 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:00.948 -07 000000541 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:00.968 -07 000000541 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:05:00.968 -07 000000541 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:05:00.968 -07 000000541 INF: Y Motor: Moved to 73.1768 after 1520 ms (table move)
17-03-17 19:05:00.968 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167416 mm (DAC = 36572)
17-03-17 19:05:00.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:00.968 -07 000000623 INF: FPGA: Recv ZSGSRD 35355
17-03-17 19:05:00.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:05:00.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:00.978 -07 000000541 INF: FPGA: Recv ZSGSRD 35348
17-03-17 19:05:00.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:00.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:00.988 -07 000000476 INF: FPGA: Recv ZSGSRD 35343
17-03-17 19:05:00.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:00.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:00.998 -07 000000541 INF: FPGA: Recv ZSGSRD 35350
17-03-17 19:05:01.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:01.008 -07 000000476 INF: FPGA: Recv ZSGSRD 35349
17-03-17 19:05:01.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:01.018 -07 000000541 INF: FPGA: Recv ZSGSRD 35354
17-03-17 19:05:01.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:01.028 -07 000000476 INF: FPGA: Recv ZSGSRD 35358
17-03-17 19:05:01.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:01.038 -07 000000541 INF: FPGA: Recv ZSGSRD 35348
17-03-17 19:05:01.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:01.048 -07 000000476 INF: FPGA: Recv ZSGSRD 35352
17-03-17 19:05:01.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:01.058 -07 000000541 INF: FPGA: Recv ZSGSRD 35347
17-03-17 19:05:01.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:01.068 -07 000000476 INF: FPGA: Recv ZPIEZORD 31227
17-03-17 19:05:01.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.078 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.581 V. Piezo Error = -9.1 V.
17-03-17 19:05:01.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35350 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35350 (-166.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35343 (-166.5 uncal um), Max = 35358 (-166.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:05:01.078 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35350, posNoise = 8, negNoise = 7
17-03-17 19:05:01.078 -07 000000610 INF: Z Motor: After move to -0.167416, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:01.078 -07 000000610 INF: Z Motor: Settle wait time = 1521 ms, measure time = 107 ms (allowed 150 ms), total time = 1628 ms
17-03-17 19:05:01.078 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:05:01.128 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1681 ms
17-03-17 19:05:01.128 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:05:01.128 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.167419251222385. ----------
17-03-17 19:05:01.128 -07 000000610 INF: Cycle	21	Tile	17	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:05:01.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36395, sync = True, waitForSettling = True)
17-03-17 19:05:01.128 -07 000000610 INF: Z Motor: Moving to -0.166606 mm, started at -0.167419 mm, distance = 0.81 um
17-03-17 19:05:01.128 -07 000000610 INF: FPGA: Xmit ZDACW 36395\n [Z Motor]
17-03-17 19:05:01.128 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 19:05:01.138 -07 000000610 INF: FPGA: 'ZDACW 36395' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:05:01.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:01.138 -07 000000438 INF: FPGA: Recv ZDACR 36395
17-03-17 19:05:01.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:05:01.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:01.298 -07 000000433 INF: FPGA: Recv ZSGSRD 35223
17-03-17 19:05:01.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:01.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:01.308 -07 000000476 INF: FPGA: Recv ZSGSRD 35221
17-03-17 19:05:01.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:01.318 -07 000000438 INF: FPGA: Recv ZSGSRD 35224
17-03-17 19:05:01.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:01.328 -07 000000476 INF: FPGA: Recv ZSGSRD 35229
17-03-17 19:05:01.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:01.338 -07 000000623 INF: FPGA: Recv ZSGSRD 35230
17-03-17 19:05:01.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:01.348 -07 000000623 INF: FPGA: Recv ZSGSRD 35225
17-03-17 19:05:01.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:01.358 -07 000000476 INF: FPGA: Recv ZSGSRD 35223
17-03-17 19:05:01.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:01.368 -07 000000438 INF: FPGA: Recv ZSGSRD 35228
17-03-17 19:05:01.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:01.378 -07 000000476 INF: FPGA: Recv ZSGSRD 35221
17-03-17 19:05:01.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:01.388 -07 000000438 INF: FPGA: Recv ZSGSRD 35222
17-03-17 19:05:01.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:01.398 -07 000000433 INF: FPGA: Recv ZPIEZORD 31054
17-03-17 19:05:01.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:01.408 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.554 V. Piezo Error = -9.2 V.
17-03-17 19:05:01.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35225 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35224 (-165.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35221 (-165.7 uncal um), Max = 35230 (-165.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:05:01.408 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35225, posNoise = 5, negNoise = 4
17-03-17 19:05:01.408 -07 000000610 INF: Z Motor: After move to -0.166606, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:01.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:05:01.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:01.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:01.408 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:01.408 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:01.408 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:05:01.408 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:01.408 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:05:01.408 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:05:01.408 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:05:01.408 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:05:01.408 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:05:01.408 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:05:01.418 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:05:01.418 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:05:01.418 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:05:01.418 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:05:01.428 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:05:01.428 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:05:01.428 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:05:01.428 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:05:01.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36572 150\n [Camera]
17-03-17 19:05:01.638 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:05:01.648 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:05:01.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:05:02.038 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:05:02.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:05:02.038 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:02.038 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:05:02.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:05:02.038 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:02.038 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:02.038 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:05:02.038 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:02.038 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:05:02.228 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36572 783
17-03-17 19:05:02.378 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:05:02.418 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:05:02.418 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:05:02.418 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:02.428 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:02.428 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:05:02.428 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:05:02.428 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:02.428 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:02.428 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:05:02.428 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:05:02.568 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:05:02.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:05:02.568 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:02.568 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:05:02.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:05:02.568 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:02.578 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:02.578 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:05:02.578 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:02.578 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:05:02.758 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-17 19:05:02.758 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:05:02.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36572 150' command took 2 ms to send, 1316 ms to get response, and 1324 ms overall
17-03-17 19:05:02.768 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.167086
17-03-17 19:05:02.768 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16709 mm
17-03-17 19:05:02.768 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:05:02.768 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:05:02.768 -07 000000623 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 19:05:02.768 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:02.768 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 36500, sync = True, waitForSettling = False)
17-03-17 19:05:02.768 -07 000000433 INF: Z Motor: Moving to -0.167086 mm, started at -0.166616 mm, distance = -0.47 um
17-03-17 19:05:02.768 -07 000000502 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:05:02.778 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:05:02.778 -07 000000623 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:02.778 -07 000000623 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:05:02.778 -07 000000623 INF: Y Motor: Moving 1353 steps-33
17-03-17 19:05:02.778 -07 000000433 INF: FPGA: Xmit ZDACW 36500\n [Z Motor]
17-03-17 19:05:02.778 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:05:02.788 -07 000000433 INF: FPGA: 'ZDACW 36500' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:05:02.788 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:02.788 -07 000000438 INF: FPGA: Recv ZDACR 36500
17-03-17 19:05:02.798 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:02.798 -07 000000433 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 19:05:02.798 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:05:02.958 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:05:02.958 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:05:02.958 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:02.958 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:05:02.958 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:05:02.958 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:02.968 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:02.968 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:05:02.968 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:02.978 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:05:03.168 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 19:05:03.168 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:05:03.198 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:03.198 -07 000000486 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:05:03.208 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:05:03.208 -07 000000623 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:03.208 -07 000000623 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:05:03.208 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.125 mm/sec
17-03-17 19:05:04.158 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:04.158 -07 000000486 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:05:04.168 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:04.168 -07 000000623 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:04.178 -07 000000623 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:05:04.178 -07 000000623 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:05:04.178 -07 000000623 INF: Y Motor: Moved to 74.0088 after 1411 ms (table move)
17-03-17 19:05:04.178 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167086 mm (DAC = 36500)
17-03-17 19:05:04.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.188 -07 000000593 INF: FPGA: Recv ZSGSRD 35293
17-03-17 19:05:04.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:05:04.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.188 -07 000000502 INF: FPGA: Recv ZSGSRD 35304
17-03-17 19:05:04.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:05:04.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.198 -07 000000476 INF: FPGA: Recv ZSGSRD 35299
17-03-17 19:05:04.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:04.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.208 -07 000000486 INF: FPGA: Recv ZSGSRD 35298
17-03-17 19:05:04.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:04.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.218 -07 000000623 INF: FPGA: Recv ZSGSRD 35307
17-03-17 19:05:04.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:04.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.228 -07 000000486 INF: FPGA: Recv ZSGSRD 35303
17-03-17 19:05:04.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:04.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.248 -07 000000593 INF: FPGA: Recv ZSGSRD 35312
17-03-17 19:05:04.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:05:04.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.258 -07 000000502 INF: FPGA: Recv ZSGSRD 35294
17-03-17 19:05:04.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:04.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.268 -07 000000438 INF: FPGA: Recv ZSGSRD 35299
17-03-17 19:05:04.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:04.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.278 -07 000000433 INF: FPGA: Recv ZSGSRD 35298
17-03-17 19:05:04.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:04.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:04.288 -07 000000476 INF: FPGA: Recv ZPIEZORD 31186
17-03-17 19:05:04.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:04.298 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.570 V. Piezo Error = -9.1 V.
17-03-17 19:05:04.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35301 (-166.2 uncal um), Error = 0.8 uncal um, Median = 35299 (-166.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35293 (-166.2 uncal um), Max = 35312 (-166.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:05:04.298 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35301, posNoise = 11, negNoise = 8
17-03-17 19:05:04.298 -07 000000610 INF: Z Motor: After move to -0.167086, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:04.298 -07 000000610 INF: Z Motor: Settle wait time = 1414 ms, measure time = 112 ms (allowed 150 ms), total time = 1526 ms
17-03-17 19:05:04.298 -07 000000610 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 19:05:04.338 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1569 ms
17-03-17 19:05:04.338 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:05:04.338 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.167104464827439. ----------
17-03-17 19:05:04.338 -07 000000610 INF: Cycle	21	Tile	18	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:05:04.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36323, sync = True, waitForSettling = True)
17-03-17 19:05:04.338 -07 000000610 INF: Z Motor: Moving to -0.166276 mm, started at -0.167104 mm, distance = 0.83 um
17-03-17 19:05:04.338 -07 000000610 INF: FPGA: Xmit ZDACW 36323\n [Z Motor]
17-03-17 19:05:04.338 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:05:04.348 -07 000000610 INF: FPGA: 'ZDACW 36323' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:05:04.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:04.348 -07 000000593 INF: FPGA: Recv ZDACR 36323
17-03-17 19:05:04.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:04.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:05:04.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.508 -07 000000433 INF: FPGA: Recv ZSGSRD 35166
17-03-17 19:05:04.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:04.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.518 -07 000000476 INF: FPGA: Recv ZSGSRD 35181
17-03-17 19:05:04.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:04.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.528 -07 000000593 INF: FPGA: Recv ZSGSRD 35181
17-03-17 19:05:04.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:04.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.538 -07 000000486 INF: FPGA: Recv ZSGSRD 35170
17-03-17 19:05:04.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:04.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.558 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.007176,
17-03-17 19:05:04.558 -07 000000476 INF: FPGA: Recv ZSGSRD 35183
17-03-17 19:05:04.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:05:04.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.568 -07 000000593 INF: FPGA: Recv ZSGSRD 35171
17-03-17 19:05:04.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:04.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.598 -07 000000433 INF: FPGA: Recv ZSGSRD 35174
17-03-17 19:05:04.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:05:04.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.628 -07 000000486 INF: FPGA: Recv ZSGSRD 35177
17-03-17 19:05:04.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:05:04.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.638 -07 000000502 INF: FPGA: Recv ZSGSRD 35172
17-03-17 19:05:04.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:04.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:04.648 -07 000000593 INF: FPGA: Recv ZSGSRD 35177
17-03-17 19:05:04.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:04.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:04.658 -07 000000486 INF: FPGA: Recv ZPIEZORD 31008
17-03-17 19:05:04.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:04.668 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.543 V. Piezo Error = -9.2 V.
17-03-17 19:05:04.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35175 (-165.4 uncal um), Error = 0.8 uncal um, Median = 35176 (-165.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35166 (-165.4 uncal um), Max = 35183 (-165.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:05:04.668 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35175, posNoise = 8, negNoise = 9
17-03-17 19:05:04.668 -07 000000610 INF: Z Motor: After move to -0.166276, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:04.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 326 ms)
17-03-17 19:05:04.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:04.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:04.668 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:04.668 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:04.668 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:05:04.668 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:05:04.668 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:05:04.668 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:05:04.668 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:05:04.668 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:04.668 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:05:04.668 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:05:04.678 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:05:04.678 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:05:04.678 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:05:04.678 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:05:04.688 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:05:04.688 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:05:04.688 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:05:04.688 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:05:04.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36500 150\n [Camera]
17-03-17 19:05:04.888 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:05:05.288 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:05:05.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:05:05.288 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:05.288 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:05.288 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:05:05.288 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:05:05.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:05:05.298 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:05.298 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:05.298 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1152421592, 0x0, 418435064) start.
17-03-17 19:05:05.488 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36500 783
17-03-17 19:05:05.628 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:05:05.678 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:05:05.678 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:05:05.678 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:05.678 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1152421592, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:05:05.678 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:05:05.678 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:05.678 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:05.678 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:05:05.678 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:05.688 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:05:05.828 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:05:05.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:05:05.828 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:05.828 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:05.828 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 19:05:05.828 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:05:05.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:05:05.828 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:05.828 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:05.828 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 19:05:06.018 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:05:06.018 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:05:06.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36500 150' command took 2 ms to send, 1315 ms to get response, and 1326 ms overall
17-03-17 19:05:06.018 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.166681
17-03-17 19:05:06.018 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16668 mm
17-03-17 19:05:06.018 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:05:06.018 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:05:06.018 -07 000000486 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 19:05:06.018 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 36411, sync = True, waitForSettling = False)
17-03-17 19:05:06.028 -07 000000480 INF: Z Motor: Moving to -0.166679 mm, started at -0.166295 mm, distance = -0.38 um
17-03-17 19:05:06.028 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:06.028 -07 000000476 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:05:06.038 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:06.038 -07 000000486 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:06.038 -07 000000486 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:05:06.038 -07 000000486 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:05:06.038 -07 000000480 INF: FPGA: Xmit ZDACW 36411\n [Z Motor]
17-03-17 19:05:06.038 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:05:06.048 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:05:06.048 -07 000000480 INF: FPGA: 'ZDACW 36411' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:05:06.058 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:06.058 -07 000000476 INF: FPGA: Recv ZDACR 36411
17-03-17 19:05:06.068 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:05:06.068 -07 000000480 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 19:05:06.218 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 19:05:06.218 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:05:06.218 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:06.218 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:05:06.218 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:05:06.228 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:06.228 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:06.228 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:05:06.228 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:06.238 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:05:06.428 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:05:06.428 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 19:05:06.448 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:06.448 -07 000000476 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:05:06.458 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:05:06.458 -07 000000486 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:06.458 -07 000000486 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 19:05:06.458 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.164 mm/sec
17-03-17 19:05:06.648 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:05:06.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:05:07.408 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:07.408 -07 000000551 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:05:07.418 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.418 -07 000000486 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:07.428 -07 000000486 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:05:07.428 -07 000000486 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:05:07.428 -07 000000486 INF: Y Motor: Moved to 74.8325 after 1406 ms (table move)
17-03-17 19:05:07.428 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166679 mm (DAC = 36411)
17-03-17 19:05:07.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.438 -07 000000623 INF: FPGA: Recv ZSGSRD 35242
17-03-17 19:05:07.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:07.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.448 -07 000000480 INF: FPGA: Recv ZSGSRD 35231
17-03-17 19:05:07.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.458 -07 000000551 INF: FPGA: Recv ZSGSRD 35229
17-03-17 19:05:07.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.468 -07 000000476 INF: FPGA: Recv ZSGSRD 35229
17-03-17 19:05:07.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.478 -07 000000623 INF: FPGA: Recv ZSGSRD 35235
17-03-17 19:05:07.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.488 -07 000000476 INF: FPGA: Recv ZSGSRD 35242
17-03-17 19:05:07.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.498 -07 000000623 INF: FPGA: Recv ZSGSRD 35237
17-03-17 19:05:07.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.508 -07 000000551 INF: FPGA: Recv ZSGSRD 35240
17-03-17 19:05:07.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.518 -07 000000480 INF: FPGA: Recv ZSGSRD 35241
17-03-17 19:05:07.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.528 -07 000000486 INF: FPGA: Recv ZSGSRD 35235
17-03-17 19:05:07.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:07.538 -07 000000486 INF: FPGA: Recv ZPIEZORD 31082
17-03-17 19:05:07.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.548 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -9.2 V.
17-03-17 19:05:07.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35236 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35236 (-165.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35229 (-165.8 uncal um), Max = 35242 (-165.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:05:07.548 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35236, posNoise = 6, negNoise = 7
17-03-17 19:05:07.548 -07 000000610 INF: Z Motor: After move to -0.166679, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:07.548 -07 000000610 INF: Z Motor: Settle wait time = 1409 ms, measure time = 111 ms (allowed 150 ms), total time = 1520 ms
17-03-17 19:05:07.548 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 19:05:07.588 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1562 ms
17-03-17 19:05:07.588 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:05:07.588 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.166686891038224. ----------
17-03-17 19:05:07.588 -07 000000610 INF: Cycle	21	Tile	19	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:05:07.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36235, sync = True, waitForSettling = True)
17-03-17 19:05:07.588 -07 000000610 INF: Z Motor: Moving to -0.165873 mm, started at -0.166687 mm, distance = 0.81 um
17-03-17 19:05:07.588 -07 000000610 INF: FPGA: Xmit ZDACW 36235\n [Z Motor]
17-03-17 19:05:07.588 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:05:07.598 -07 000000610 INF: FPGA: 'ZDACW 36235' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:05:07.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:07.598 -07 000000486 INF: FPGA: Recv ZDACR 36235
17-03-17 19:05:07.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:05:07.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.758 -07 000000551 INF: FPGA: Recv ZSGSRD 35115
17-03-17 19:05:07.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:07.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.768 -07 000000626 INF: FPGA: Recv ZSGSRD 35109
17-03-17 19:05:07.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.778 -07 000000551 INF: FPGA: Recv ZSGSRD 35105
17-03-17 19:05:07.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.788 -07 000000476 INF: FPGA: Recv ZSGSRD 35109
17-03-17 19:05:07.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.798 -07 000000480 INF: FPGA: Recv ZSGSRD 35116
17-03-17 19:05:07.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.808 -07 000000486 INF: FPGA: Recv ZSGSRD 35114
17-03-17 19:05:07.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.818 -07 000000480 INF: FPGA: Recv ZSGSRD 35112
17-03-17 19:05:07.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.828 -07 000000486 INF: FPGA: Recv ZSGSRD 35112
17-03-17 19:05:07.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.838 -07 000000480 INF: FPGA: Recv ZSGSRD 35110
17-03-17 19:05:07.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:07.848 -07 000000626 INF: FPGA: Recv ZSGSRD 35110
17-03-17 19:05:07.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:07.858 -07 000000551 INF: FPGA: Recv ZPIEZORD 30926
17-03-17 19:05:07.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:07.868 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.529 V. Piezo Error = -9.2 V.
17-03-17 19:05:07.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35111 (-165.0 uncal um), Error = 0.9 uncal um, Median = 35111 (-165.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35105 (-165.0 uncal um), Max = 35116 (-165.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:05:07.868 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35111, posNoise = 5, negNoise = 6
17-03-17 19:05:07.868 -07 000000610 INF: Z Motor: After move to -0.165873, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:07.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:05:07.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:07.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:07.868 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:07.868 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:07.868 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:05:07.868 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:07.868 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:05:07.868 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:05:07.868 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:05:07.868 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:05:07.868 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:05:07.868 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:05:07.868 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:05:07.868 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:05:07.878 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:05:07.878 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:05:07.888 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:05:07.888 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:05:07.888 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 19:05:07.888 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:05:07.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36411 150\n [Camera]
17-03-17 19:05:08.088 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:05:08.488 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:05:08.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:05:08.488 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:08.488 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:08.488 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:05:08.498 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:05:08.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:05:08.498 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:08.498 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:08.498 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:05:08.688 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36411 783
17-03-17 19:05:08.828 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:05:08.888 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:05:08.888 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:05:08.888 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:08.898 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:08.898 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:05:08.898 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:05:08.898 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:05:08.898 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:08.898 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:08.908 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:05:09.028 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:05:09.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:05:09.028 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:09.148 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:05:09.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:05:09.148 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:09.148 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:09.148 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:05:09.158 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:09.158 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:05:09.218 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:05:09.218 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:05:09.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36411 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-17 19:05:09.528 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 19:05:09.528 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 19:05:09.528 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:09.528 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:05:09.528 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:05:09.528 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:09.528 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:05:09.528 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-17 19:05:09.528 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:05:09.538 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:05:09.538 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:05:09.578 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 19:05:09.578 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:05:09.618 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 19:05:09.618 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 19:05:09.618 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:05:09.628 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-17 19:05:09.628 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 19:05:09.638 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 19:05:09.948 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.990831,
17-03-17 19:05:10.138 -07 000000623 INF: FPGA: Recv EMIN
17-03-17 19:05:10.138 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 511 ms overall
17-03-17 19:05:10.138 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 19:05:10.138 -07 000000541 INF: FPGA: Recv EMCUR 
17-03-17 19:05:10.148 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:05:10.148 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:05:10.148 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.165883864520504. ------
17-03-17 19:05:10.148 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:05:10.148 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14029 mm
17-03-17 19:05:10.148 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:05:10.158 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:05:10.158 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:05:10.158 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30647, sync = True, waitForSettling = False)
17-03-17 19:05:10.158 -07 000000551 INF: Z Motor: Moving to -0.140293 mm, started at -0.165884 mm, distance = 25.59 um
17-03-17 19:05:10.158 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:05:10.158 -07 000000480 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 19:05:10.158 -07 000000551 INF: FPGA: Xmit ZDACW 30647\n [Z Motor]
17-03-17 19:05:10.158 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:05:10.168 -07 000000551 INF: FPGA: 'ZDACW 30647' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:05:10.168 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:05:10.178 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:10.178 -07 000000512 INF: FPGA: Recv YRDPOS 153259
17-03-17 19:05:10.188 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:10.188 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:05:10.188 -07 000000480 INF: Y Motor: Encoder = 153259 = motor step 119733.6 = 74.8335 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:10.188 -07 000000512 INF: FPGA: Recv ZDACR 30647
17-03-17 19:05:10.188 -07 000000480 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 19:05:10.188 -07 000000480 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:05:10.198 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:05:10.198 -07 000000551 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 19:05:10.198 -07 000000480 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:05:10.368 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:05:10.368 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 19:05:11.648 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:05:11.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:05:11.818 -07 000000512 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 19:05:11.818 -07 000000480 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1635 ms overall
17-03-17 19:05:11.818 -07 000000480 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:05:11.818 -07 000000480 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 19:05:11.818 -07 000000480 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1635 ms, distance = 14.920 mm, average velocity = 9.125 mm/sec
17-03-17 19:05:14.668 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:14.668 -07 000000512 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:05:14.678 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:14.678 -07 000000480 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:14.698 -07 000000480 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:05:14.698 -07 000000480 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 19:05:14.698 -07 000000480 INF: Y Motor: Moved to 59.9116 after 4546 ms
17-03-17 19:05:14.708 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140293 mm (DAC = 30647)
17-03-17 19:05:14.708 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:14.708 -07 000000476 INF: FPGA: Recv ZSGSRD 31132
17-03-17 19:05:14.718 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:14.718 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:14.718 -07 000000480 INF: FPGA: Recv ZSGSRD 31124
17-03-17 19:05:14.728 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:14.728 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:14.728 -07 000000480 INF: FPGA: Recv ZSGSRD 31124
17-03-17 19:05:14.738 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:14.738 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:14.738 -07 000000476 INF: FPGA: Recv ZSGSRD 31125
17-03-17 19:05:14.748 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:14.748 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:14.748 -07 000000480 INF: FPGA: Recv ZSGSRD 31135
17-03-17 19:05:14.758 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:14.758 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:14.758 -07 000000476 INF: FPGA: Recv ZSGSRD 31126
17-03-17 19:05:14.768 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:14.768 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:14.768 -07 000000551 INF: FPGA: Recv ZSGSRD 31128
17-03-17 19:05:14.778 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:14.778 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:14.778 -07 000000480 INF: FPGA: Recv ZSGSRD 31133
17-03-17 19:05:14.788 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:14.788 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:14.788 -07 000000424 INF: FPGA: Recv ZSGSRD 31136
17-03-17 19:05:14.798 -07 000000541 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:14.798 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:14.798 -07 000000480 INF: FPGA: Recv ZSGSRD 31129
17-03-17 19:05:14.808 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:14.808 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:14.808 -07 000000424 INF: FPGA: Recv ZPIEZORD 26785
17-03-17 19:05:14.818 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:14.818 -07 000000541 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.676 V. Piezo Error = -9.5 V.
17-03-17 19:05:14.818 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.3 um, Read 10 ADC samples: Avg = 31129 (-139.5 uncal um), Error = 0.8 uncal um, Median = 31128 (-139.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31124 (-139.5 uncal um), Max = 31136 (-139.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:05:14.818 -07 000000541 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31129, posNoise = 7, negNoise = 5
17-03-17 19:05:14.818 -07 000000541 INF: Z Motor: After move to -0.140293, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:14.818 -07 000000541 INF: Z Motor: Settle wait time = 4549 ms, measure time = 110 ms (allowed 150 ms), total time = 4659 ms
17-03-17 19:05:14.818 -07 000000541 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 19:05:14.858 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4702 ms
17-03-17 19:05:14.858 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:05:14.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:14.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:14.858 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:14.858 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:14.858 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:05:14.858 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:14.858 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:05:14.858 -07 000000431 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:05:14.878 -07 000000431 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 19 ms.
17-03-17 19:05:14.878 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:05:14.878 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:05:14.888 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:05:14.888 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:05:14.888 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-17 19:05:14.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:05:14.938 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:05:15.138 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:05:15.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:05:15.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:05:15.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 19:05:15.178 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:05:15.178 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 19:05:15.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 19:05:15.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 19:05:15.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:15.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:05:15.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 19:05:15.278 -07 000000431 INF: Image SNR check: start
17-03-17 19:05:15.278 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:05:15.278 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:05:15.288 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:05:15.288 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:05:15.298 -07 000000431 INF: Image SNR check: pass  [peak (Max-Min)=70.76]
17-03-17 19:05:15.298 -07 000000431 INF: Autofocus start
17-03-17 19:05:15.298 -07 000000431 INF: MeasureProfile start
17-03-17 19:05:15.308 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.979922,
17-03-17 19:05:15.308 -07 000000431 INF: MeasureProfile done
17-03-17 19:05:15.308 -07 000000431 INF: X=48  Z correction [um]=0.2069503
17-03-17 19:05:15.308 -07 000000431 INF: Autofocus finished
17-03-17 19:05:15.488 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:05:15.488 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 2 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 19:05:15.488 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.140302651772012. ----------
17-03-17 19:05:15.498 -07 000000610 INF: Cycle	21	Tile	1	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:05:15.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29205, sync = True, waitForSettling = True)
17-03-17 19:05:15.498 -07 000000610 INF: Z Motor: Moving to -0.133692 mm, started at -0.140303 mm, distance = 6.61 um
17-03-17 19:05:15.498 -07 000000610 INF: FPGA: Xmit ZDACW 29205\n [Z Motor]
17-03-17 19:05:15.498 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:05:15.508 -07 000000610 INF: FPGA: 'ZDACW 29205' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:05:15.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:15.508 -07 000000551 INF: FPGA: Recv ZDACR 29205
17-03-17 19:05:15.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:15.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:05:15.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:15.668 -07 000000480 INF: FPGA: Recv ZSGSRD 30103
17-03-17 19:05:15.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:15.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:15.678 -07 000000512 INF: FPGA: Recv ZSGSRD 30105
17-03-17 19:05:15.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:15.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:15.688 -07 000000424 INF: FPGA: Recv ZSGSRD 30098
17-03-17 19:05:15.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:15.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:15.698 -07 000000551 INF: FPGA: Recv ZSGSRD 30098
17-03-17 19:05:15.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:15.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:15.708 -07 000000541 INF: FPGA: Recv ZSGSRD 30097
17-03-17 19:05:15.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:15.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:15.718 -07 000000476 INF: FPGA: Recv ZSGSRD 30093
17-03-17 19:05:15.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:15.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:15.728 -07 000000424 INF: FPGA: Recv ZSGSRD 30097
17-03-17 19:05:15.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:15.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:15.738 -07 000000551 INF: FPGA: Recv ZSGSRD 30094
17-03-17 19:05:15.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:15.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:15.748 -07 000000480 INF: FPGA: Recv ZSGSRD 30103
17-03-17 19:05:15.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:15.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:15.758 -07 000000512 INF: FPGA: Recv ZSGSRD 30100
17-03-17 19:05:15.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:15.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:15.768 -07 000000424 INF: FPGA: Recv ZPIEZORD 25649
17-03-17 19:05:15.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:15.778 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.456 V. Piezo Error = -9.8 V.
17-03-17 19:05:15.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30099 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30098 (-132.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30093 (-132.9 uncal um), Max = 30105 (-132.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:05:15.778 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30099, posNoise = 6, negNoise = 6
17-03-17 19:05:15.778 -07 000000610 INF: Z Motor: After move to -0.133692, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:15.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:05:15.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:15.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:15.778 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:05:15.778 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:15.778 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:15.778 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:05:15.778 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:05:15.778 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:15.778 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 19:05:15.778 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:05:15.778 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:05:15.778 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:05:15.788 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:05:15.788 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:05:15.798 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:05:15.798 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:05:15.798 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 19 ms.
17-03-17 19:05:15.798 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:05:15.808 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:05:15.808 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:05:15.808 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:05:15.808 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms.
17-03-17 19:05:15.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 29381 150\n [Camera]
17-03-17 19:05:16.018 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:05:16.408 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:05:16.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:05:16.418 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:16.418 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:05:16.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:05:16.418 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:16.528 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:16.528 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:05:16.528 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:16.528 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:05:16.608 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29381 783
17-03-17 19:05:16.648 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:05:16.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:05:16.758 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:05:16.918 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:05:16.918 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:05:16.918 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:16.928 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 19:05:16.928 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:05:16.928 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:16.928 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:16.928 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-17 19:05:16.928 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:16.938 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-17 19:05:16.948 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:05:16.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:05:16.948 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:16.948 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:05:16.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:05:16.948 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:16.948 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:16.948 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:05:16.958 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:16.958 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:05:17.138 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-17 19:05:17.138 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:05:17.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 29381 150' command took 2 ms to send, 1315 ms to get response, and 1324 ms overall
17-03-17 19:05:17.138 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.134150
17-03-17 19:05:17.138 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13415 mm
17-03-17 19:05:17.138 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:05:17.148 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29305, sync = True, waitForSettling = False)
17-03-17 19:05:17.148 -07 000000462 INF: Z Motor: Moving to -0.134150 mm, started at -0.133686 mm, distance = -0.46 um
17-03-17 19:05:17.148 -07 000000462 INF: FPGA: Xmit ZDACW 29305\n [Z Motor]
17-03-17 19:05:17.148 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:05:17.148 -07 000000512 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 19:05:17.148 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:05:17.158 -07 000000462 INF: FPGA: 'ZDACW 29305' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:17.158 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:17.158 -07 000000480 INF: FPGA: Recv ZDACR 29305
17-03-17 19:05:17.168 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:17.168 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:17.168 -07 000000462 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-17 19:05:17.168 -07 000000462 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:05:17.178 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:05:17.178 -07 000000512 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:17.178 -07 000000512 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:05:17.178 -07 000000512 INF: Y Motor: Moving 1330 steps2
17-03-17 19:05:17.178 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:05:17.338 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:05:17.338 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:05:17.338 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:17.348 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:17.348 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:05:17.348 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:05:17.348 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:17.348 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:17.348 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:05:17.348 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:05:17.548 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 19:05:17.548 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 19:05:17.578 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:17.578 -07 000000462 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:05:17.588 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:05:17.588 -07 000000512 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:17.588 -07 000000512 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:05:17.588 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.831 mm, average velocity = 2.198 mm/sec
17-03-17 19:05:18.538 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:18.538 -07 000000551 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:05:18.548 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.548 -07 000000512 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:18.568 -07 000000512 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:05:18.568 -07 000000512 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:05:18.568 -07 000000512 INF: Y Motor: Moved to 60.7334 after 1420 ms (table move)
17-03-17 19:05:18.568 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134150 mm (DAC = 29305)
17-03-17 19:05:18.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.568 -07 000000512 INF: FPGA: Recv ZSGSRD 30177
17-03-17 19:05:18.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:05:18.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.578 -07 000000512 INF: FPGA: Recv ZSGSRD 30169
17-03-17 19:05:18.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.588 -07 000000462 INF: FPGA: Recv ZSGSRD 30179
17-03-17 19:05:18.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.598 -07 000000480 INF: FPGA: Recv ZSGSRD 30178
17-03-17 19:05:18.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.608 -07 000000512 INF: FPGA: Recv ZSGSRD 30177
17-03-17 19:05:18.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.618 -07 000000512 INF: FPGA: Recv ZSGSRD 30176
17-03-17 19:05:18.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.628 -07 000000480 INF: FPGA: Recv ZSGSRD 30178
17-03-17 19:05:18.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.638 -07 000000476 INF: FPGA: Recv ZSGSRD 30164
17-03-17 19:05:18.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.648 -07 000000476 INF: FPGA: Recv ZSGSRD 30168
17-03-17 19:05:18.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.658 -07 000000551 INF: FPGA: Recv ZSGSRD 30174
17-03-17 19:05:18.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:18.668 -07 000000480 INF: FPGA: Recv ZPIEZORD 25796
17-03-17 19:05:18.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.678 -07 000000610 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.472 V. Piezo Error = -9.6 V.
17-03-17 19:05:18.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.1 um, Read 10 ADC samples: Avg = 30174 (-133.4 uncal um), Error = 0.8 uncal um, Median = 30176 (-133.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30164 (-133.3 uncal um), Max = 30179 (-133.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:05:18.678 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30174, posNoise = 5, negNoise = 10
17-03-17 19:05:18.678 -07 000000610 INF: Z Motor: After move to -0.134150, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:18.678 -07 000000610 INF: Z Motor: Settle wait time = 1423 ms, measure time = 106 ms (allowed 150 ms), total time = 1529 ms
17-03-17 19:05:18.678 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:05:18.728 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 19:05:18.728 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:05:18.728 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.13416752917663. ----------
17-03-17 19:05:18.728 -07 000000610 INF: Cycle	21	Tile	2	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:05:18.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29128, sync = True, waitForSettling = True)
17-03-17 19:05:18.728 -07 000000610 INF: Z Motor: Moving to -0.133339 mm, started at -0.134168 mm, distance = 0.83 um
17-03-17 19:05:18.728 -07 000000610 INF: FPGA: Xmit ZDACW 29128\n [Z Motor]
17-03-17 19:05:18.728 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:05:18.738 -07 000000610 INF: FPGA: 'ZDACW 29128' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:05:18.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:18.738 -07 000000480 INF: FPGA: Recv ZDACR 29128
17-03-17 19:05:18.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:05:18.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.898 -07 000000438 INF: FPGA: Recv ZSGSRD 30047
17-03-17 19:05:18.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:18.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.908 -07 000000551 INF: FPGA: Recv ZSGSRD 30052
17-03-17 19:05:18.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.918 -07 000000462 INF: FPGA: Recv ZSGSRD 30051
17-03-17 19:05:18.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.928 -07 000000551 INF: FPGA: Recv ZSGSRD 30044
17-03-17 19:05:18.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.938 -07 000000462 INF: FPGA: Recv ZSGSRD 30045
17-03-17 19:05:18.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.948 -07 000000480 INF: FPGA: Recv ZSGSRD 30047
17-03-17 19:05:18.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.958 -07 000000512 INF: FPGA: Recv ZSGSRD 30045
17-03-17 19:05:18.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.968 -07 000000551 INF: FPGA: Recv ZSGSRD 30045
17-03-17 19:05:18.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.978 -07 000000462 INF: FPGA: Recv ZSGSRD 30046
17-03-17 19:05:18.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:18.988 -07 000000551 INF: FPGA: Recv ZSGSRD 30046
17-03-17 19:05:18.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:18.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:18.998 -07 000000462 INF: FPGA: Recv ZPIEZORD 25634
17-03-17 19:05:19.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:19.008 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.445 V. Piezo Error = -9.7 V.
17-03-17 19:05:19.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30047 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30046 (-132.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30044 (-132.5 uncal um), Max = 30052 (-132.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:05:19.008 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30047, posNoise = 5, negNoise = 3
17-03-17 19:05:19.008 -07 000000610 INF: Z Motor: After move to -0.133339, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:19.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:05:19.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:19.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:19.008 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:19.008 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:05:19.008 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:19.008 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:05:19.008 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:05:19.008 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 19:05:19.008 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:05:19.008 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:19.008 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:05:19.008 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:05:19.018 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:05:19.018 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:05:19.018 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:05:19.018 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:05:19.028 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:05:19.028 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 19:05:19.028 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:05:19.028 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:05:19.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 29305 150\n [Camera]
17-03-17 19:05:19.238 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:05:19.628 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:05:19.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:05:19.628 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:19.638 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:19.638 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1081577064, 0x0, 391868352) start.
17-03-17 19:05:19.638 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:05:19.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:05:19.638 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:19.638 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:19.638 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1116999328, 0x0, 418435064) start.
17-03-17 19:05:19.828 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29305 783
17-03-17 19:05:19.978 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:05:20.038 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1081577064, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:05:20.038 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:05:20.038 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:20.038 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1116999328, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 19:05:20.038 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:05:20.038 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:20.038 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:20.038 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:05:20.038 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:20.048 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:05:20.168 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:05:20.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:05:20.168 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:20.168 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:20.168 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1152421592, 0x0, 391868352) start.
17-03-17 19:05:20.168 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:05:20.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:05:20.168 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:20.168 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:20.168 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:05:20.358 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-17 19:05:20.358 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:05:20.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 29305 150' command took 2 ms to send, 1314 ms to get response, and 1323 ms overall
17-03-17 19:05:20.358 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.134050
17-03-17 19:05:20.358 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13405 mm
17-03-17 19:05:20.358 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:05:20.358 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:05:20.358 -07 000000433 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 19:05:20.358 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:20.358 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29283, sync = True, waitForSettling = False)
17-03-17 19:05:20.358 -07 000000551 INF: Z Motor: Moving to -0.134049 mm, started at -0.133352 mm, distance = -0.70 um
17-03-17 19:05:20.368 -07 000000551 INF: FPGA: Xmit ZDACW 29283\n [Z Motor]
17-03-17 19:05:20.368 -07 000000476 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:05:20.368 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:05:20.368 -07 000000433 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:20.368 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:05:20.368 -07 000000433 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:05:20.368 -07 000000433 INF: Y Motor: Moving 1342 steps-19
17-03-17 19:05:20.378 -07 000000551 INF: FPGA: 'ZDACW 29283' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:05:20.378 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:20.378 -07 000000512 INF: FPGA: Recv ZDACR 29283
17-03-17 19:05:20.388 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:05:20.388 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:20.388 -07 000000551 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 19:05:20.568 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 19:05:20.568 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:05:20.568 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:20.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1152421592, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 19:05:20.578 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:05:20.578 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:20.578 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:20.578 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:20.578 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 19:05:20.588 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:05:20.668 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.000345,
17-03-17 19:05:20.758 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:05:20.758 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:05:20.798 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:20.798 -07 000000486 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:05:20.808 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:20.808 -07 000000433 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:20.808 -07 000000433 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:05:20.808 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.135 mm/sec
17-03-17 19:05:21.648 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:05:21.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:05:21.758 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:21.758 -07 000000626 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:05:21.768 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:21.768 -07 000000433 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:21.788 -07 000000433 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:05:21.788 -07 000000433 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:05:21.788 -07 000000433 INF: Y Motor: Moved to 61.5645 after 1422 ms (table move)
17-03-17 19:05:21.788 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134049 mm (DAC = 29283)
17-03-17 19:05:21.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:21.788 -07 000000476 INF: FPGA: Recv ZSGSRD 30164
17-03-17 19:05:21.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:05:21.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:21.798 -07 000000433 INF: FPGA: Recv ZSGSRD 30149
17-03-17 19:05:21.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:21.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:21.808 -07 000000626 INF: FPGA: Recv ZSGSRD 30160
17-03-17 19:05:21.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:21.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:21.818 -07 000000476 INF: FPGA: Recv ZSGSRD 30166
17-03-17 19:05:21.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:21.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:21.828 -07 000000486 INF: FPGA: Recv ZSGSRD 30147
17-03-17 19:05:21.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:21.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:21.838 -07 000000486 INF: FPGA: Recv ZSGSRD 30160
17-03-17 19:05:21.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:05:21.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:21.848 -07 000000476 INF: FPGA: Recv ZSGSRD 30151
17-03-17 19:05:21.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:21.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:21.858 -07 000000561 INF: FPGA: Recv ZSGSRD 30154
17-03-17 19:05:21.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:21.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:21.868 -07 000000626 INF: FPGA: Recv ZSGSRD 30154
17-03-17 19:05:21.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:21.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:21.878 -07 000000593 INF: FPGA: Recv ZSGSRD 30151
17-03-17 19:05:21.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:21.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:21.898 -07 000000626 INF: FPGA: Recv ZPIEZORD 25826
17-03-17 19:05:21.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:05:21.908 -07 000000610 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.468 V. Piezo Error = -9.5 V.
17-03-17 19:05:21.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.0 um, Read 10 ADC samples: Avg = 30156 (-133.3 uncal um), Error = 0.8 uncal um, Median = 30154 (-133.3 uncal um), StdDev = 7 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30147 (-133.2 uncal um), Max = 30166 (-133.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:05:21.908 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30156, posNoise = 10, negNoise = 9
17-03-17 19:05:21.908 -07 000000610 INF: Z Motor: After move to -0.134049, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:21.908 -07 000000610 INF: Z Motor: Settle wait time = 1424 ms, measure time = 117 ms (allowed 150 ms), total time = 1541 ms
17-03-17 19:05:21.908 -07 000000610 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 19:05:21.948 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 19:05:21.948 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:05:21.948 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.134051893358078. ----------
17-03-17 19:05:21.948 -07 000000610 INF: Cycle	21	Tile	3	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:05:21.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29107, sync = True, waitForSettling = True)
17-03-17 19:05:21.948 -07 000000610 INF: Z Motor: Moving to -0.133243 mm, started at -0.134052 mm, distance = 0.81 um
17-03-17 19:05:21.948 -07 000000610 INF: FPGA: Xmit ZDACW 29107\n [Z Motor]
17-03-17 19:05:21.948 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 19:05:21.958 -07 000000610 INF: FPGA: 'ZDACW 29107' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:05:21.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:21.958 -07 000000626 INF: FPGA: Recv ZDACR 29107
17-03-17 19:05:21.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:21.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:05:22.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:22.118 -07 000000476 INF: FPGA: Recv ZSGSRD 30037
17-03-17 19:05:22.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:22.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:22.128 -07 000000433 INF: FPGA: Recv ZSGSRD 30027
17-03-17 19:05:22.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:22.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:22.138 -07 000000626 INF: FPGA: Recv ZSGSRD 30034
17-03-17 19:05:22.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:22.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:22.148 -07 000000433 INF: FPGA: Recv ZSGSRD 30033
17-03-17 19:05:22.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:22.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:22.158 -07 000000626 INF: FPGA: Recv ZSGSRD 30030
17-03-17 19:05:22.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:22.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:22.168 -07 000000433 INF: FPGA: Recv ZSGSRD 30027
17-03-17 19:05:22.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:22.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:22.178 -07 000000626 INF: FPGA: Recv ZSGSRD 30027
17-03-17 19:05:22.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:22.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:22.188 -07 000000593 INF: FPGA: Recv ZSGSRD 30033
17-03-17 19:05:22.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:22.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:22.198 -07 000000433 INF: FPGA: Recv ZSGSRD 30030
17-03-17 19:05:22.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:22.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:22.208 -07 000000476 INF: FPGA: Recv ZSGSRD 30030
17-03-17 19:05:22.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:22.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:22.218 -07 000000433 INF: FPGA: Recv ZPIEZORD 25645
17-03-17 19:05:22.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:22.228 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.6 V.
17-03-17 19:05:22.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30031 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30030 (-132.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30027 (-132.4 uncal um), Max = 30037 (-132.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:05:22.228 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30031, posNoise = 6, negNoise = 4
17-03-17 19:05:22.228 -07 000000610 INF: Z Motor: After move to -0.133243, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:22.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:05:22.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:22.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:22.228 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:22.228 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:22.228 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:05:22.228 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:05:22.228 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:05:22.228 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:22.228 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:05:22.228 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:05:22.228 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:05:22.228 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:05:22.238 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:05:22.238 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:05:22.238 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:05:22.238 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:05:22.248 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:05:22.248 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:05:22.248 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:05:22.248 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:05:22.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 29283 150\n [Camera]
17-03-17 19:05:22.458 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:05:22.848 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:05:22.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:05:22.848 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:22.848 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:22.848 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:05:22.858 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:05:22.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:05:22.858 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:22.858 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:22.858 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:05:23.048 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29283 783
17-03-17 19:05:23.198 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:05:23.248 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 19:05:23.248 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:05:23.248 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:23.248 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:23.248 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:05:23.248 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:05:23.248 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:23.258 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:23.258 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:05:23.258 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:05:23.388 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:05:23.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:05:23.388 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:23.388 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:23.388 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 19:05:23.388 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:05:23.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:05:23.388 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:23.388 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:23.388 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 19:05:23.578 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-17 19:05:23.578 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:05:23.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 29283 150' command took 2 ms to send, 1314 ms to get response, and 1323 ms overall
17-03-17 19:05:23.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:05:23.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.133248866840358. ------
17-03-17 19:05:23.588 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13963 mm
17-03-17 19:05:23.588 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:05:23.588 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:05:23.588 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:05:23.588 -07 000000626 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 19:05:23.588 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:05:23.588 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 30502, sync = True, waitForSettling = False)
17-03-17 19:05:23.588 -07 000000541 INF: Z Motor: Moving to -0.139629 mm, started at -0.133249 mm, distance = -6.38 um
17-03-17 19:05:23.598 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:05:23.598 -07 000000541 INF: FPGA: Xmit ZDACW 30502\n [Z Motor]
17-03-17 19:05:23.598 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:05:23.608 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:23.608 -07 000000541 INF: FPGA: 'ZDACW 30502' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:05:23.608 -07 000000486 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:05:23.618 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:05:23.618 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:05:23.618 -07 000000626 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:23.618 -07 000000626 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:05:23.618 -07 000000626 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:05:23.628 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:23.628 -07 000000569 INF: FPGA: Recv ZDACR 30502
17-03-17 19:05:23.638 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:05:23.638 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:05:23.638 -07 000000541 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 19:05:23.768 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:05:23.768 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:05:23.768 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:23.768 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:05:23.768 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:05:23.768 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:23.768 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:23.768 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:05:23.778 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:23.778 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:05:23.818 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:05:23.818 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:05:24.008 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 19:05:24.008 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 19:05:24.048 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:24.048 -07 000000433 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:05:24.058 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:05:24.058 -07 000000626 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:24.058 -07 000000626 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:05:24.058 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 19:05:25.008 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:25.008 -07 000000415 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:05:25.018 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:25.018 -07 000000626 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:25.038 -07 000000626 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:05:25.038 -07 000000626 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:05:25.038 -07 000000626 INF: Y Motor: Moved to 62.3960 after 1445 ms (table move)
17-03-17 19:05:25.038 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139629 mm (DAC = 30502)
17-03-17 19:05:25.038 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:25.038 -07 000000433 INF: FPGA: Recv ZSGSRD 31025
17-03-17 19:05:25.048 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:05:25.048 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:25.048 -07 000000433 INF: FPGA: Recv ZSGSRD 31027
17-03-17 19:05:25.058 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:25.058 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:25.058 -07 000000626 INF: FPGA: Recv ZSGSRD 31034
17-03-17 19:05:25.068 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:25.068 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:25.068 -07 000000433 INF: FPGA: Recv ZSGSRD 31033
17-03-17 19:05:25.078 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:25.078 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:25.078 -07 000000626 INF: FPGA: Recv ZSGSRD 31026
17-03-17 19:05:25.088 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:25.088 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:25.088 -07 000000433 INF: FPGA: Recv ZSGSRD 31028
17-03-17 19:05:25.098 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:25.098 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:25.098 -07 000000626 INF: FPGA: Recv ZSGSRD 31018
17-03-17 19:05:25.108 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:25.108 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:25.108 -07 000000626 INF: FPGA: Recv ZSGSRD 31021
17-03-17 19:05:25.118 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:25.118 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:25.118 -07 000000433 INF: FPGA: Recv ZSGSRD 31020
17-03-17 19:05:25.128 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:25.128 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:25.128 -07 000000433 INF: FPGA: Recv ZSGSRD 31025
17-03-17 19:05:25.138 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:25.138 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:25.138 -07 000000415 INF: FPGA: Recv ZPIEZORD 26954
17-03-17 19:05:25.148 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:25.148 -07 000000593 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.654 V. Piezo Error = -9.0 V.
17-03-17 19:05:25.148 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31026 (-138.8 uncal um), Error = 0.8 uncal um, Median = 31026 (-138.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31018 (-138.8 uncal um), Max = 31034 (-138.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:05:25.148 -07 000000593 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31026, posNoise = 8, negNoise = 8
17-03-17 19:05:25.148 -07 000000593 INF: Z Motor: After move to -0.139629, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:25.148 -07 000000593 INF: Z Motor: Settle wait time = 1447 ms, measure time = 107 ms (allowed 150 ms), total time = 1554 ms
17-03-17 19:05:25.148 -07 000000593 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:05:25.198 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 19:05:25.198 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:05:25.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:25.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:25.198 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:25.198 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:25.198 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:05:25.198 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:25.198 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:05:25.198 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:05:25.208 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:05:25.208 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:05:25.208 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:05:25.208 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:05:25.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:05:25.268 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:05:25.468 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:05:25.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:05:25.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:05:25.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 19:05:25.498 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:05:25.508 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 19:05:25.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 288 ms overall
17-03-17 19:05:25.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:05:25.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:25.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:05:25.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:05:25.608 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:05:25.608 -07 000000424 INF: Autofocus start
17-03-17 19:05:25.608 -07 000000424 INF: MeasureProfile start
17-03-17 19:05:25.608 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:05:25.618 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:05:25.618 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:05:25.618 -07 000000424 INF: MeasureProfile done
17-03-17 19:05:25.618 -07 000000424 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:05:25.618 -07 000000424 INF: Autofocus finished
17-03-17 19:05:25.818 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:05:25.818 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:05:25.818 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.13964095792141. ----------
17-03-17 19:05:25.818 -07 000000610 INF: Cycle	21	Tile	4	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:05:25.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29027, sync = True, waitForSettling = True)
17-03-17 19:05:25.828 -07 000000610 INF: Z Motor: Moving to -0.132877 mm, started at -0.139641 mm, distance = 6.76 um
17-03-17 19:05:25.828 -07 000000610 INF: FPGA: Xmit ZDACW 29027\n [Z Motor]
17-03-17 19:05:25.828 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:05:25.838 -07 000000610 INF: FPGA: 'ZDACW 29027' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:25.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:25.838 -07 000000569 INF: FPGA: Recv ZDACR 29027
17-03-17 19:05:25.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:25.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:05:25.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:25.998 -07 000000476 INF: FPGA: Recv ZSGSRD 29973
17-03-17 19:05:26.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:26.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:26.008 -07 000000569 INF: FPGA: Recv ZSGSRD 29974
17-03-17 19:05:26.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:26.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:26.028 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.011254,
17-03-17 19:05:26.028 -07 000000438 INF: FPGA: Recv ZSGSRD 29974
17-03-17 19:05:26.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:05:26.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:26.058 -07 000000626 INF: FPGA: Recv ZSGSRD 29978
17-03-17 19:05:26.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:05:26.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:26.068 -07 000000476 INF: FPGA: Recv ZSGSRD 29979
17-03-17 19:05:26.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:26.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:26.098 -07 000000626 INF: FPGA: Recv ZSGSRD 29976
17-03-17 19:05:26.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:05:26.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:26.108 -07 000000561 INF: FPGA: Recv ZSGSRD 29975
17-03-17 19:05:26.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:26.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:26.118 -07 000000476 INF: FPGA: Recv ZSGSRD 29970
17-03-17 19:05:26.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:26.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:26.128 -07 000000569 INF: FPGA: Recv ZSGSRD 29974
17-03-17 19:05:26.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:26.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:26.138 -07 000000424 INF: FPGA: Recv ZSGSRD 29972
17-03-17 19:05:26.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:26.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:26.148 -07 000000438 INF: FPGA: Recv ZPIEZORD 25573
17-03-17 19:05:26.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:26.158 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.429 V. Piezo Error = -9.7 V.
17-03-17 19:05:26.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29974 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29974 (-132.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29970 (-132.1 uncal um), Max = 29979 (-132.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:05:26.158 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29974, posNoise = 5, negNoise = 4
17-03-17 19:05:26.158 -07 000000610 INF: Z Motor: After move to -0.132877, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:26.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-17 19:05:26.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:26.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:26.158 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:26.158 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:05:26.158 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:26.158 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:05:26.158 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:05:26.158 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:26.158 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:05:26.158 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:05:26.158 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:05:26.158 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:05:26.158 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:05:26.158 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:05:26.158 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:05:26.168 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:05:26.168 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:05:26.168 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:05:26.178 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:05:26.178 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:05:26.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 29203 150\n [Camera]
17-03-17 19:05:26.378 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:05:26.648 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:05:26.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:05:26.778 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:05:26.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:05:26.778 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:26.778 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:26.778 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:05:26.778 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:05:26.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:05:26.778 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:26.778 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:26.778 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 19:05:26.968 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29203 783
17-03-17 19:05:27.118 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:05:27.158 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:05:27.158 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:05:27.158 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:27.158 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:05:27.158 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:05:27.158 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:27.158 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:27.158 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:05:27.158 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:27.168 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:05:27.308 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:05:27.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:05:27.308 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:27.428 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:05:27.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:05:27.438 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:27.438 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:27.438 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 19:05:27.438 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:27.438 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:05:27.498 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:05:27.498 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:05:27.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 29203 150' command took 2 ms to send, 1317 ms to get response, and 1323 ms overall
17-03-17 19:05:27.498 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.133625
17-03-17 19:05:27.508 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13362 mm
17-03-17 19:05:27.508 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:05:27.508 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:05:27.508 -07 000000480 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 19:05:27.508 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:27.508 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29190, sync = True, waitForSettling = False)
17-03-17 19:05:27.508 -07 000000431 INF: Z Motor: Moving to -0.133623 mm, started at -0.132883 mm, distance = -0.74 um
17-03-17 19:05:27.508 -07 000000569 INF: FPGA: Recv YRDPOS 127788
17-03-17 19:05:27.518 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:05:27.518 -07 000000480 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:27.518 -07 000000431 INF: FPGA: Xmit ZDACW 29190\n [Z Motor]
17-03-17 19:05:27.518 -07 000000480 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:05:27.518 -07 000000480 INF: Y Motor: Moving 1338 steps-14
17-03-17 19:05:27.518 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:05:27.528 -07 000000431 INF: FPGA: 'ZDACW 29190' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:05:27.528 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:05:27.538 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:27.538 -07 000000623 INF: FPGA: Recv ZDACR 29190
17-03-17 19:05:27.548 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:05:27.548 -07 000000431 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 19:05:27.828 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:05:27.828 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:05:27.828 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:27.828 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:27.828 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:05:27.828 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:05:27.838 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:27.838 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:27.838 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-17 19:05:27.838 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:05:27.908 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 19:05:27.908 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 388 ms overall
17-03-17 19:05:27.938 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:27.938 -07 000000626 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:05:27.948 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:05:27.948 -07 000000480 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:27.948 -07 000000480 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:05:27.948 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.837 mm, average velocity = 2.151 mm/sec
17-03-17 19:05:28.898 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:28.898 -07 000000424 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:05:28.908 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:28.908 -07 000000480 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:28.928 -07 000000480 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:05:28.928 -07 000000480 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:05:28.928 -07 000000480 INF: Y Motor: Moved to 63.2251 after 1418 ms (table move)
17-03-17 19:05:28.928 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133623 mm (DAC = 29190)
17-03-17 19:05:28.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:28.928 -07 000000438 INF: FPGA: Recv ZSGSRD 30090
17-03-17 19:05:28.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:05:28.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:28.938 -07 000000476 INF: FPGA: Recv ZSGSRD 30089
17-03-17 19:05:28.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:28.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:28.948 -07 000000438 INF: FPGA: Recv ZSGSRD 30081
17-03-17 19:05:28.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:28.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:28.958 -07 000000476 INF: FPGA: Recv ZSGSRD 30082
17-03-17 19:05:28.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:28.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:28.968 -07 000000438 INF: FPGA: Recv ZSGSRD 30087
17-03-17 19:05:28.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:28.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:28.978 -07 000000480 INF: FPGA: Recv ZSGSRD 30093
17-03-17 19:05:28.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:28.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:28.988 -07 000000561 INF: FPGA: Recv ZSGSRD 30092
17-03-17 19:05:28.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:28.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:28.998 -07 000000476 INF: FPGA: Recv ZSGSRD 30091
17-03-17 19:05:29.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:29.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:29.008 -07 000000569 INF: FPGA: Recv ZSGSRD 30093
17-03-17 19:05:29.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:29.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:29.018 -07 000000626 INF: FPGA: Recv ZSGSRD 30089
17-03-17 19:05:29.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:29.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:29.028 -07 000000480 INF: FPGA: Recv ZPIEZORD 25771
17-03-17 19:05:29.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:29.038 -07 000000610 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.454 V. Piezo Error = -9.5 V.
17-03-17 19:05:29.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30089 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30090 (-132.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30081 (-132.8 uncal um), Max = 30093 (-132.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:05:29.038 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30089, posNoise = 4, negNoise = 8
17-03-17 19:05:29.038 -07 000000610 INF: Z Motor: After move to -0.133623, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:29.038 -07 000000610 INF: Z Motor: Settle wait time = 1420 ms, measure time = 107 ms (allowed 150 ms), total time = 1527 ms
17-03-17 19:05:29.038 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:05:29.088 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1579 ms
17-03-17 19:05:29.088 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:05:29.088 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.13362147114458. ----------
17-03-17 19:05:29.088 -07 000000610 INF: Cycle	21	Tile	5	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:05:29.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29014, sync = True, waitForSettling = True)
17-03-17 19:05:29.088 -07 000000610 INF: Z Motor: Moving to -0.132818 mm, started at -0.133621 mm, distance = 0.80 um
17-03-17 19:05:29.088 -07 000000610 INF: FPGA: Xmit ZDACW 29014\n [Z Motor]
17-03-17 19:05:29.088 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:05:29.098 -07 000000610 INF: FPGA: 'ZDACW 29014' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:05:29.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:29.098 -07 000000424 INF: FPGA: Recv ZDACR 29014
17-03-17 19:05:29.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:29.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:05:29.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:29.258 -07 000000623 INF: FPGA: Recv ZSGSRD 29970
17-03-17 19:05:29.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:29.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:29.268 -07 000000626 INF: FPGA: Recv ZSGSRD 29959
17-03-17 19:05:29.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:29.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:29.278 -07 000000431 INF: FPGA: Recv ZSGSRD 29966
17-03-17 19:05:29.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:29.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:29.288 -07 000000480 INF: FPGA: Recv ZSGSRD 29969
17-03-17 19:05:29.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:29.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:29.298 -07 000000431 INF: FPGA: Recv ZSGSRD 29971
17-03-17 19:05:29.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:29.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:29.308 -07 000000569 INF: FPGA: Recv ZSGSRD 29968
17-03-17 19:05:29.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:29.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:29.318 -07 000000424 INF: FPGA: Recv ZSGSRD 29964
17-03-17 19:05:29.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:29.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:29.328 -07 000000569 INF: FPGA: Recv ZSGSRD 29970
17-03-17 19:05:29.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:29.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:29.338 -07 000000424 INF: FPGA: Recv ZSGSRD 29962
17-03-17 19:05:29.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:29.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:29.348 -07 000000626 INF: FPGA: Recv ZSGSRD 29963
17-03-17 19:05:29.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:29.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:29.358 -07 000000431 INF: FPGA: Recv ZPIEZORD 25623
17-03-17 19:05:29.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:29.368 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.427 V. Piezo Error = -9.5 V.
17-03-17 19:05:29.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29966 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29967 (-132.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29959 (-132.0 uncal um), Max = 29971 (-132.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:05:29.368 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29966, posNoise = 5, negNoise = 7
17-03-17 19:05:29.368 -07 000000610 INF: Z Motor: After move to -0.132818, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:29.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:05:29.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:29.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:29.368 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:29.368 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:05:29.368 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:29.368 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:05:29.368 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:05:29.368 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:05:29.368 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:05:29.368 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:29.368 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:05:29.368 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:05:29.378 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:05:29.378 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:05:29.378 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:05:29.378 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:05:29.388 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:05:29.388 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:05:29.388 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:05:29.388 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:05:29.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 29190 150\n [Camera]
17-03-17 19:05:29.588 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:05:29.988 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:05:29.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:05:29.988 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:29.988 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:05:29.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:05:29.988 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:29.988 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:29.988 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:05:29.998 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:29.998 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) start.
17-03-17 19:05:30.178 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29190 783
17-03-17 19:05:30.328 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:05:30.368 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 19:05:30.368 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 19:05:30.368 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:30.368 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 19:05:30.368 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:05:30.368 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:30.368 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:30.368 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:05:30.368 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:30.378 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:05:30.518 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:05:30.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:05:30.518 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:30.528 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:05:30.528 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:30.528 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-17 19:05:30.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:05:30.528 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:30.528 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:30.528 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:05:30.708 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-17 19:05:30.708 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:05:30.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 29190 150' command took 2 ms to send, 1317 ms to get response, and 1323 ms overall
17-03-17 19:05:30.708 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.133328
17-03-17 19:05:30.708 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13333 mm
17-03-17 19:05:30.708 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:05:30.718 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:05:30.718 -07 000000424 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 19:05:30.718 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:30.718 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29125, sync = True, waitForSettling = False)
17-03-17 19:05:30.718 -07 000000623 INF: Z Motor: Moving to -0.133326 mm, started at -0.132831 mm, distance = -0.49 um
17-03-17 19:05:30.718 -07 000000438 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:05:30.728 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:05:30.728 -07 000000424 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:30.728 -07 000000424 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:05:30.728 -07 000000424 INF: Y Motor: Moving 1340 steps-15
17-03-17 19:05:30.728 -07 000000623 INF: FPGA: Xmit ZDACW 29125\n [Z Motor]
17-03-17 19:05:30.728 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:05:30.738 -07 000000623 INF: FPGA: 'ZDACW 29125' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:05:30.738 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:30.738 -07 000000626 INF: FPGA: Recv ZDACR 29125
17-03-17 19:05:30.748 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:05:30.748 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:30.748 -07 000000623 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 19:05:30.898 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:05:30.908 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:05:30.908 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:30.908 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:05:30.908 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:05:30.908 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:30.908 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:30.908 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:05:30.908 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:30.918 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:05:31.128 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 19:05:31.128 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 19:05:31.158 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:31.158 -07 000000569 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:05:31.168 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:05:31.168 -07 000000424 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:31.168 -07 000000424 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 19:05:31.168 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.838 mm, average velocity = 2.099 mm/sec
17-03-17 19:05:31.418 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.999021,
17-03-17 19:05:31.658 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:05:31.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:05:32.118 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:32.118 -07 000000431 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:05:32.128 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:32.128 -07 000000424 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:32.138 -07 000000424 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:05:32.138 -07 000000424 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:05:32.138 -07 000000424 INF: Y Motor: Moved to 64.0576 after 1425 ms (table move)
17-03-17 19:05:32.148 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133326 mm (DAC = 29125)
17-03-17 19:05:32.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.148 -07 000000438 INF: FPGA: Recv ZSGSRD 30045
17-03-17 19:05:32.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:32.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.158 -07 000000626 INF: FPGA: Recv ZSGSRD 30042
17-03-17 19:05:32.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.168 -07 000000512 INF: FPGA: Recv ZSGSRD 30047
17-03-17 19:05:32.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.178 -07 000000623 INF: FPGA: Recv ZSGSRD 30047
17-03-17 19:05:32.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.188 -07 000000438 INF: FPGA: Recv ZSGSRD 30038
17-03-17 19:05:32.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.198 -07 000000623 INF: FPGA: Recv ZSGSRD 30044
17-03-17 19:05:32.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.208 -07 000000626 INF: FPGA: Recv ZSGSRD 30042
17-03-17 19:05:32.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.218 -07 000000623 INF: FPGA: Recv ZSGSRD 30037
17-03-17 19:05:32.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.228 -07 000000431 INF: FPGA: Recv ZSGSRD 30044
17-03-17 19:05:32.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.238 -07 000000623 INF: FPGA: Recv ZSGSRD 30040
17-03-17 19:05:32.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:32.248 -07 000000438 INF: FPGA: Recv ZPIEZORD 25706
17-03-17 19:05:32.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.258 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.444 V. Piezo Error = -9.5 V.
17-03-17 19:05:32.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30043 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30043 (-132.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30037 (-132.5 uncal um), Max = 30047 (-132.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:05:32.258 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30043, posNoise = 4, negNoise = 6
17-03-17 19:05:32.258 -07 000000610 INF: Z Motor: After move to -0.133326, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:32.258 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 111 ms (allowed 150 ms), total time = 1537 ms
17-03-17 19:05:32.258 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 19:05:32.298 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 19:05:32.298 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:05:32.298 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.133325957386059. ----------
17-03-17 19:05:32.298 -07 000000610 INF: Cycle	21	Tile	6	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:05:32.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28949, sync = True, waitForSettling = True)
17-03-17 19:05:32.298 -07 000000610 INF: Z Motor: Moving to -0.132520 mm, started at -0.133326 mm, distance = 0.81 um
17-03-17 19:05:32.298 -07 000000610 INF: FPGA: Xmit ZDACW 28949\n [Z Motor]
17-03-17 19:05:32.298 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:05:32.308 -07 000000610 INF: FPGA: 'ZDACW 28949' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:05:32.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:32.318 -07 000000424 INF: FPGA: Recv ZDACR 28949
17-03-17 19:05:32.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:05:32.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:05:32.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.478 -07 000000626 INF: FPGA: Recv ZSGSRD 29921
17-03-17 19:05:32.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:32.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.488 -07 000000569 INF: FPGA: Recv ZSGSRD 29924
17-03-17 19:05:32.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.498 -07 000000431 INF: FPGA: Recv ZSGSRD 29923
17-03-17 19:05:32.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.508 -07 000000438 INF: FPGA: Recv ZSGSRD 29919
17-03-17 19:05:32.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.518 -07 000000424 INF: FPGA: Recv ZSGSRD 29915
17-03-17 19:05:32.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.528 -07 000000431 INF: FPGA: Recv ZSGSRD 29925
17-03-17 19:05:32.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.538 -07 000000569 INF: FPGA: Recv ZSGSRD 29921
17-03-17 19:05:32.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.548 -07 000000623 INF: FPGA: Recv ZSGSRD 29918
17-03-17 19:05:32.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.558 -07 000000512 INF: FPGA: Recv ZSGSRD 29925
17-03-17 19:05:32.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:32.568 -07 000000431 INF: FPGA: Recv ZSGSRD 29920
17-03-17 19:05:32.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:32.578 -07 000000626 INF: FPGA: Recv ZPIEZORD 25571
17-03-17 19:05:32.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:32.588 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -9.5 V.
17-03-17 19:05:32.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29921 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29921 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29915 (-131.7 uncal um), Max = 29925 (-131.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:05:32.588 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29921, posNoise = 4, negNoise = 6
17-03-17 19:05:32.588 -07 000000610 INF: Z Motor: After move to -0.132520, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:32.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 19:05:32.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:32.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:32.588 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:32.588 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:32.588 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:05:32.588 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:32.588 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:05:32.588 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:05:32.588 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:05:32.588 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:05:32.588 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:05:32.588 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:05:32.598 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:05:32.598 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:05:32.598 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:05:32.598 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:05:32.608 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:05:32.608 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:05:32.608 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:05:32.608 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:05:32.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 29125 150\n [Camera]
17-03-17 19:05:32.808 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:05:33.208 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:05:33.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:05:33.208 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:33.218 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:05:33.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:05:33.218 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:33.218 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:33.218 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1424724128, 0x0, 391868352) start.
17-03-17 19:05:33.218 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:33.218 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:05:33.398 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29125 783
17-03-17 19:05:33.548 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:05:33.608 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1424724128, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 19:05:33.608 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:05:33.608 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:33.608 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 19:05:33.608 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:05:33.608 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:33.608 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:33.618 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:05:33.618 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:33.628 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:05:33.748 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:05:33.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:05:33.748 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:33.748 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:33.748 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:05:33.748 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:05:33.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:05:33.748 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:33.748 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:33.748 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1081577064, 0x0, 418435064) start.
17-03-17 19:05:33.938 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:05:33.938 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:05:33.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 29125 150' command took 2 ms to send, 1313 ms to get response, and 1324 ms overall
17-03-17 19:05:33.938 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.133073
17-03-17 19:05:33.938 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13307 mm
17-03-17 19:05:33.938 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:05:33.938 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29070, sync = True, waitForSettling = False)
17-03-17 19:05:33.938 -07 000000569 INF: Z Motor: Moving to -0.133074 mm, started at -0.132542 mm, distance = -0.53 um
17-03-17 19:05:33.938 -07 000000569 INF: FPGA: Xmit ZDACW 29070\n [Z Motor]
17-03-17 19:05:33.938 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:05:33.938 -07 000000424 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 19:05:33.948 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:33.948 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:05:33.948 -07 000000569 INF: FPGA: 'ZDACW 29070' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:05:33.948 -07 000000551 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:05:33.958 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:33.958 -07 000000424 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:33.958 -07 000000424 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:05:33.958 -07 000000424 INF: Y Motor: Moving 1336 steps-10
17-03-17 19:05:33.958 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:33.958 -07 000000551 INF: FPGA: Recv ZDACR 29070
17-03-17 19:05:33.968 -07 000000569 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:05:33.968 -07 000000569 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 19:05:33.968 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:05:34.118 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1081577064, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:05:34.118 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:05:34.118 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:34.128 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:05:34.128 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:05:34.128 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:34.128 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:34.128 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:34.128 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:05:34.138 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:05:34.338 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:05:34.338 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 388 ms overall
17-03-17 19:05:34.378 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:34.378 -07 000000551 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:05:34.388 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:05:34.388 -07 000000424 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:34.388 -07 000000424 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:05:34.388 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.835 mm, average velocity = 2.152 mm/sec
17-03-17 19:05:35.338 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:35.338 -07 000000502 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:05:35.348 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:35.348 -07 000000424 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:35.368 -07 000000424 INF: Y Motor: After move to 64.892609, error = -0.012726, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:05:35.368 -07 000000424 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:05:35.368 -07 000000424 INF: Y Motor: Moved to 64.8799 after 1424 ms (table move)
17-03-17 19:05:35.368 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133074 mm (DAC = 29070)
17-03-17 19:05:35.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.368 -07 000000415 INF: FPGA: Recv ZSGSRD 30001
17-03-17 19:05:35.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:05:35.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.378 -07 000000462 INF: FPGA: Recv ZSGSRD 30004
17-03-17 19:05:35.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.388 -07 000000551 INF: FPGA: Recv ZSGSRD 30001
17-03-17 19:05:35.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.398 -07 000000424 INF: FPGA: Recv ZSGSRD 30008
17-03-17 19:05:35.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.408 -07 000000415 INF: FPGA: Recv ZSGSRD 30006
17-03-17 19:05:35.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.418 -07 000000569 INF: FPGA: Recv ZSGSRD 30006
17-03-17 19:05:35.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.428 -07 000000415 INF: FPGA: Recv ZSGSRD 30004
17-03-17 19:05:35.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:35.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.438 -07 000000462 INF: FPGA: Recv ZSGSRD 29999
17-03-17 19:05:35.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.448 -07 000000438 INF: FPGA: Recv ZSGSRD 30003
17-03-17 19:05:35.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.458 -07 000000415 INF: FPGA: Recv ZSGSRD 30002
17-03-17 19:05:35.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:35.468 -07 000000438 INF: FPGA: Recv ZPIEZORD 25682
17-03-17 19:05:35.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.478 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.436 V. Piezo Error = -9.5 V.
17-03-17 19:05:35.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30003 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30004 (-132.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29999 (-132.3 uncal um), Max = 30008 (-132.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:05:35.478 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30003, posNoise = 5, negNoise = 4
17-03-17 19:05:35.478 -07 000000610 INF: Z Motor: After move to -0.133074, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:35.478 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 104 ms (allowed 150 ms), total time = 1531 ms
17-03-17 19:05:35.478 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:05:35.528 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 19:05:35.528 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:05:35.528 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8798828125, Z-position -0.133068988900389. ----------
17-03-17 19:05:35.528 -07 000000610 INF: Cycle	21	Tile	7	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:05:35.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28893, sync = True, waitForSettling = True)
17-03-17 19:05:35.528 -07 000000610 INF: Z Motor: Moving to -0.132264 mm, started at -0.133069 mm, distance = 0.81 um
17-03-17 19:05:35.528 -07 000000610 INF: FPGA: Xmit ZDACW 28893\n [Z Motor]
17-03-17 19:05:35.528 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:05:35.538 -07 000000610 INF: FPGA: 'ZDACW 28893' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:05:35.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:35.538 -07 000000424 INF: FPGA: Recv ZDACR 28893
17-03-17 19:05:35.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:05:35.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.698 -07 000000462 INF: FPGA: Recv ZSGSRD 29884
17-03-17 19:05:35.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.708 -07 000000502 INF: FPGA: Recv ZSGSRD 29885
17-03-17 19:05:35.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.718 -07 000000569 INF: FPGA: Recv ZSGSRD 29881
17-03-17 19:05:35.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.728 -07 000000438 INF: FPGA: Recv ZSGSRD 29881
17-03-17 19:05:35.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.738 -07 000000502 INF: FPGA: Recv ZSGSRD 29874
17-03-17 19:05:35.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.748 -07 000000424 INF: FPGA: Recv ZSGSRD 29874
17-03-17 19:05:35.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.758 -07 000000438 INF: FPGA: Recv ZSGSRD 29875
17-03-17 19:05:35.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.768 -07 000000569 INF: FPGA: Recv ZSGSRD 29880
17-03-17 19:05:35.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.778 -07 000000462 INF: FPGA: Recv ZSGSRD 29882
17-03-17 19:05:35.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:35.788 -07 000000502 INF: FPGA: Recv ZSGSRD 29878
17-03-17 19:05:35.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:35.798 -07 000000415 INF: FPGA: Recv ZPIEZORD 25521
17-03-17 19:05:35.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:35.808 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.409 V. Piezo Error = -9.6 V.
17-03-17 19:05:35.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29879 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29880 (-131.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29874 (-131.5 uncal um), Max = 29885 (-131.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:05:35.808 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29879, posNoise = 6, negNoise = 5
17-03-17 19:05:35.808 -07 000000610 INF: Z Motor: After move to -0.132264, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:35.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:05:35.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:35.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:35.808 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:35.808 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:35.808 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:05:35.808 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:35.808 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:05:35.808 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:05:35.808 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 19:05:35.808 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:05:35.808 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:05:35.808 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:05:35.818 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:05:35.818 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:05:35.818 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:05:35.818 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:05:35.828 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:05:35.828 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 19:05:35.828 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:05:35.828 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:05:35.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 29070 150\n [Camera]
17-03-17 19:05:36.038 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:05:36.438 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:05:36.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:05:36.438 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:36.438 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:36.438 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1116999328, 0x0, 391868352) start.
17-03-17 19:05:36.438 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:05:36.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:05:36.438 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:36.568 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:36.568 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:05:36.628 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29070 785
17-03-17 19:05:36.658 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:05:36.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:05:36.778 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:05:36.818 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1116999328, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:05:36.818 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:05:36.818 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:36.818 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:36.818 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:05:36.888 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.974486,
17-03-17 19:05:36.938 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 19:05:36.938 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 19:05:36.938 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:36.938 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:05:36.948 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-17 19:05:36.968 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:05:36.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:05:36.968 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:36.968 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:05:36.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:05:36.968 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:36.978 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:36.978 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:05:36.978 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:36.978 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1081577064, 0x0, 391868352) start.
17-03-17 19:05:37.158 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:05:37.158 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:05:37.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 29070 150' command took 2 ms to send, 1315 ms to get response, and 1323 ms overall
17-03-17 19:05:37.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:05:37.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8798828125, Z-Position -0.132272386594811. ------
17-03-17 19:05:37.168 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:05:37.168 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13888 mm
17-03-17 19:05:37.168 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:05:37.168 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:05:37.168 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30338, sync = True, waitForSettling = False)
17-03-17 19:05:37.168 -07 000000551 INF: Z Motor: Moving to -0.138878 mm, started at -0.132272 mm, distance = -6.61 um
17-03-17 19:05:37.168 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:05:37.168 -07 000000462 INF: Y Motor: Moving to 65.7226 mm, started at 64.8799 mm, delta = 0.8427 mm
17-03-17 19:05:37.178 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:05:37.178 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:05:37.188 -07 000000551 INF: FPGA: Xmit ZDACW 30338\n [Z Motor]
17-03-17 19:05:37.188 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:05:37.198 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:37.198 -07 000000551 INF: FPGA: 'ZDACW 30338' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:05:37.198 -07 000000541 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:05:37.208 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 19:05:37.208 -07 000000462 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:37.208 -07 000000462 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:05:37.208 -07 000000462 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:05:37.208 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:37.208 -07 000000541 INF: FPGA: Recv ZDACR 30338
17-03-17 19:05:37.218 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:05:37.218 -07 000000551 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 19:05:37.218 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:05:37.348 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:05:37.348 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:05:37.348 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:37.348 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1081577064, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 19:05:37.348 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:05:37.348 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:37.348 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:37.358 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:37.358 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:05:37.358 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:05:37.378 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:05:37.378 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:05:37.588 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:05:37.588 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 19:05:37.628 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:37.628 -07 000000415 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:05:37.638 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:05:37.638 -07 000000462 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:37.638 -07 000000462 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:05:37.638 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.172 mm/sec
17-03-17 19:05:38.588 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:38.588 -07 000000486 INF: FPGA: Recv YRDPOS 134585
17-03-17 19:05:38.598 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:38.598 -07 000000462 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:38.618 -07 000000462 INF: Y Motor: After move to 65.722610, error = -0.007278, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:05:38.618 -07 000000462 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:05:38.618 -07 000000462 INF: Y Motor: Moved to 65.7153 after 1443 ms (table move)
17-03-17 19:05:38.618 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138878 mm (DAC = 30338)
17-03-17 19:05:38.618 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:38.618 -07 000000486 INF: FPGA: Recv ZSGSRD 30917
17-03-17 19:05:38.628 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:05:38.628 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:38.628 -07 000000502 INF: FPGA: Recv ZSGSRD 30909
17-03-17 19:05:38.638 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:38.638 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:38.638 -07 000000438 INF: FPGA: Recv ZSGSRD 30912
17-03-17 19:05:38.648 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:38.648 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:38.648 -07 000000502 INF: FPGA: Recv ZSGSRD 30907
17-03-17 19:05:38.658 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:38.658 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:38.658 -07 000000438 INF: FPGA: Recv ZSGSRD 30914
17-03-17 19:05:38.668 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:38.668 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:38.668 -07 000000462 INF: FPGA: Recv ZSGSRD 30913
17-03-17 19:05:38.678 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:38.678 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:38.678 -07 000000569 INF: FPGA: Recv ZSGSRD 30904
17-03-17 19:05:38.688 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:38.688 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:38.688 -07 000000502 INF: FPGA: Recv ZSGSRD 30906
17-03-17 19:05:38.698 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:38.698 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:38.698 -07 000000569 INF: FPGA: Recv ZSGSRD 30903
17-03-17 19:05:38.708 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:38.708 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:38.708 -07 000000502 INF: FPGA: Recv ZSGSRD 30910
17-03-17 19:05:38.718 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:38.718 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:38.718 -07 000000569 INF: FPGA: Recv ZPIEZORD 26877
17-03-17 19:05:38.728 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:38.728 -07 000000424 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -8.9 V.
17-03-17 19:05:38.728 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30910 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30910 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30903 (-138.1 uncal um), Max = 30917 (-138.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:05:38.728 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30910, posNoise = 7, negNoise = 7
17-03-17 19:05:38.728 -07 000000424 INF: Z Motor: After move to -0.138878, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:38.728 -07 000000424 INF: Z Motor: Settle wait time = 1446 ms, measure time = 107 ms (allowed 150 ms), total time = 1553 ms
17-03-17 19:05:38.728 -07 000000424 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:05:38.778 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 19:05:38.778 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:05:38.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:38.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:38.778 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:38.778 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:38.778 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:05:38.778 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:38.778 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:05:38.778 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:05:38.788 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:05:38.788 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:05:38.798 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:05:38.798 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:05:38.798 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:05:38.848 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:05:39.048 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:05:39.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:05:39.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:05:39.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424724128, 0x0, 559484976) start.
17-03-17 19:05:39.088 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:05:39.088 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 19:05:39.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 19:05:39.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424724128, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:05:39.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:39.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:05:39.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:05:39.188 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:05:39.188 -07 000000438 INF: Autofocus start
17-03-17 19:05:39.188 -07 000000438 INF: MeasureProfile start
17-03-17 19:05:39.188 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:05:39.198 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:05:39.198 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:05:39.198 -07 000000438 INF: MeasureProfile done
17-03-17 19:05:39.198 -07 000000438 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 19:05:39.198 -07 000000438 INF: Autofocus finished
17-03-17 19:05:39.398 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:05:39.398 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:05:39.398 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71533203125, Z-position -0.138895749312966. ----------
17-03-17 19:05:39.398 -07 000000610 INF: Cycle	21	Tile	8	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:05:39.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28816, sync = True, waitForSettling = True)
17-03-17 19:05:39.408 -07 000000610 INF: Z Motor: Moving to -0.131911 mm, started at -0.138896 mm, distance = 6.98 um
17-03-17 19:05:39.408 -07 000000610 INF: FPGA: Xmit ZDACW 28816\n [Z Motor]
17-03-17 19:05:39.408 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:05:39.418 -07 000000610 INF: FPGA: 'ZDACW 28816' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:39.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:39.418 -07 000000438 INF: FPGA: Recv ZDACR 28816
17-03-17 19:05:39.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:39.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:05:39.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:39.578 -07 000000502 INF: FPGA: Recv ZSGSRD 29821
17-03-17 19:05:39.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:39.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:39.588 -07 000000569 INF: FPGA: Recv ZSGSRD 29819
17-03-17 19:05:39.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:39.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:39.598 -07 000000502 INF: FPGA: Recv ZSGSRD 29829
17-03-17 19:05:39.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:39.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:39.608 -07 000000569 INF: FPGA: Recv ZSGSRD 29819
17-03-17 19:05:39.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:39.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:39.618 -07 000000502 INF: FPGA: Recv ZSGSRD 29819
17-03-17 19:05:39.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:39.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:39.628 -07 000000569 INF: FPGA: Recv ZSGSRD 29829
17-03-17 19:05:39.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:39.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:39.638 -07 000000502 INF: FPGA: Recv ZSGSRD 29822
17-03-17 19:05:39.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:39.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:39.648 -07 000000462 INF: FPGA: Recv ZSGSRD 29826
17-03-17 19:05:39.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:05:39.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:39.658 -07 000000438 INF: FPGA: Recv ZSGSRD 29822
17-03-17 19:05:39.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:39.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:39.668 -07 000000486 INF: FPGA: Recv ZSGSRD 29820
17-03-17 19:05:39.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:39.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:39.678 -07 000000424 INF: FPGA: Recv ZPIEZORD 25449
17-03-17 19:05:39.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:39.688 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -9.6 V.
17-03-17 19:05:39.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29823 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29822 (-131.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29819 (-131.1 uncal um), Max = 29829 (-131.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:05:39.688 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29823, posNoise = 6, negNoise = 4
17-03-17 19:05:39.688 -07 000000610 INF: Z Motor: After move to -0.131911, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:39.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:05:39.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:39.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:39.688 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:39.688 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:05:39.688 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:05:39.688 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:05:39.688 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:39.688 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:39.688 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:05:39.688 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:05:39.688 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:05:39.688 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:05:39.688 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:05:39.688 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:05:39.698 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:05:39.698 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:05:39.698 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:05:39.698 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:05:39.698 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:05:39.698 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:05:39.708 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28992 150\n [Camera]
17-03-17 19:05:39.908 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:05:40.308 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:05:40.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:05:40.308 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:40.308 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:05:40.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:05:40.308 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:40.308 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:40.308 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:05:40.308 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:40.308 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:05:40.498 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28992 783
17-03-17 19:05:40.648 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:05:40.688 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:05:40.688 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:05:40.688 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:40.688 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:05:40.688 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:05:40.688 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:40.688 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:40.688 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:40.688 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:05:40.698 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:05:40.838 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:05:40.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:05:40.838 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:40.948 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:05:40.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:05:40.948 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:40.948 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:40.948 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1152421592, 0x0, 391868352) start.
17-03-17 19:05:40.948 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:40.948 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:05:41.028 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:05:41.028 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:05:41.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28992 150' command took 2 ms to send, 1316 ms to get response, and 1323 ms overall
17-03-17 19:05:41.028 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.132209
17-03-17 19:05:41.028 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13221 mm
17-03-17 19:05:41.028 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:05:41.038 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:05:41.038 -07 000000476 INF: Y Motor: Moving to 66.5526 mm, started at 65.7153 mm, delta = 0.8373 mm
17-03-17 19:05:41.038 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:41.038 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 28881, sync = True, waitForSettling = False)
17-03-17 19:05:41.038 -07 000000512 INF: Z Motor: Moving to -0.132209 mm, started at -0.131913 mm, distance = -0.30 um
17-03-17 19:05:41.038 -07 000000623 INF: FPGA: Recv YRDPOS 134585
17-03-17 19:05:41.048 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:41.048 -07 000000476 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:41.048 -07 000000476 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:05:41.048 -07 000000476 INF: Y Motor: Moving 1340 steps-16
17-03-17 19:05:41.048 -07 000000512 INF: FPGA: Xmit ZDACW 28881\n [Z Motor]
17-03-17 19:05:41.048 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:05:41.058 -07 000000512 INF: FPGA: 'ZDACW 28881' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:05:41.058 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:05:41.068 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:41.068 -07 000000623 INF: FPGA: Recv ZDACR 28881
17-03-17 19:05:41.078 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:05:41.078 -07 000000512 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 19:05:41.328 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:05:41.328 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:05:41.328 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:41.338 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1152421592, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:05:41.338 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:05:41.338 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:41.338 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:41.338 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:41.338 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 501 ms.
17-03-17 19:05:41.348 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:05:41.438 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:05:41.438 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 19:05:41.468 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:41.468 -07 000000424 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:05:41.478 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:05:41.478 -07 000000476 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:41.478 -07 000000476 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:05:41.478 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.837 mm, average velocity = 2.152 mm/sec
17-03-17 19:05:41.658 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:05:41.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:05:42.248 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.98264,
17-03-17 19:05:42.428 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:42.428 -07 000000569 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:05:42.438 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.438 -07 000000476 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:42.458 -07 000000476 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:05:42.458 -07 000000476 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:05:42.458 -07 000000476 INF: Y Motor: Moved to 66.5400 after 1421 ms (table move)
17-03-17 19:05:42.458 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132209 mm (DAC = 28881)
17-03-17 19:05:42.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.458 -07 000000438 INF: FPGA: Recv ZSGSRD 29872
17-03-17 19:05:42.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:05:42.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.468 -07 000000476 INF: FPGA: Recv ZSGSRD 29870
17-03-17 19:05:42.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.478 -07 000000438 INF: FPGA: Recv ZSGSRD 29870
17-03-17 19:05:42.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.488 -07 000000431 INF: FPGA: Recv ZSGSRD 29868
17-03-17 19:05:42.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.498 -07 000000502 INF: FPGA: Recv ZSGSRD 29875
17-03-17 19:05:42.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.508 -07 000000476 INF: FPGA: Recv ZSGSRD 29872
17-03-17 19:05:42.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.518 -07 000000438 INF: FPGA: Recv ZSGSRD 29865
17-03-17 19:05:42.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.528 -07 000000476 INF: FPGA: Recv ZSGSRD 29868
17-03-17 19:05:42.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.538 -07 000000438 INF: FPGA: Recv ZSGSRD 29861
17-03-17 19:05:42.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.548 -07 000000476 INF: FPGA: Recv ZSGSRD 29874
17-03-17 19:05:42.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:42.558 -07 000000438 INF: FPGA: Recv ZPIEZORD 25508
17-03-17 19:05:42.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.568 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -9.6 V.
17-03-17 19:05:42.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29870 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29870 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29861 (-131.4 uncal um), Max = 29875 (-131.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:05:42.568 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29870, posNoise = 5, negNoise = 9
17-03-17 19:05:42.568 -07 000000610 INF: Z Motor: After move to -0.132209, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:42.568 -07 000000610 INF: Z Motor: Settle wait time = 1422 ms, measure time = 107 ms (allowed 150 ms), total time = 1529 ms
17-03-17 19:05:42.568 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:05:42.618 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-17 19:05:42.618 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:05:42.618 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.132214568685535. ----------
17-03-17 19:05:42.618 -07 000000610 INF: Cycle	21	Tile	9	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:05:42.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28704, sync = True, waitForSettling = True)
17-03-17 19:05:42.618 -07 000000610 INF: Z Motor: Moving to -0.131398 mm, started at -0.132215 mm, distance = 0.82 um
17-03-17 19:05:42.618 -07 000000610 INF: FPGA: Xmit ZDACW 28704\n [Z Motor]
17-03-17 19:05:42.628 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:05:42.628 -07 000000610 INF: FPGA: 'ZDACW 28704' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 19:05:42.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:42.628 -07 000000623 INF: FPGA: Recv ZDACR 28704
17-03-17 19:05:42.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:05:42.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:05:42.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.788 -07 000000480 INF: FPGA: Recv ZSGSRD 29746
17-03-17 19:05:42.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:42.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.798 -07 000000623 INF: FPGA: Recv ZSGSRD 29745
17-03-17 19:05:42.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.808 -07 000000438 INF: FPGA: Recv ZSGSRD 29743
17-03-17 19:05:42.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.818 -07 000000502 INF: FPGA: Recv ZSGSRD 29743
17-03-17 19:05:42.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.828 -07 000000623 INF: FPGA: Recv ZSGSRD 29740
17-03-17 19:05:42.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.838 -07 000000502 INF: FPGA: Recv ZSGSRD 29744
17-03-17 19:05:42.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.848 -07 000000623 INF: FPGA: Recv ZSGSRD 29743
17-03-17 19:05:42.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.858 -07 000000424 INF: FPGA: Recv ZSGSRD 29743
17-03-17 19:05:42.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.868 -07 000000623 INF: FPGA: Recv ZSGSRD 29749
17-03-17 19:05:42.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:42.878 -07 000000502 INF: FPGA: Recv ZSGSRD 29745
17-03-17 19:05:42.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:42.888 -07 000000623 INF: FPGA: Recv ZPIEZORD 25369
17-03-17 19:05:42.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:42.898 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.380 V. Piezo Error = -9.6 V.
17-03-17 19:05:42.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29744 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29744 (-130.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29740 (-130.6 uncal um), Max = 29749 (-130.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:05:42.898 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29744, posNoise = 5, negNoise = 4
17-03-17 19:05:42.898 -07 000000610 INF: Z Motor: After move to -0.131398, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:42.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:05:42.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:42.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:42.898 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:42.898 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:05:42.898 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:42.898 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:05:42.898 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:05:42.898 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:42.898 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:05:42.898 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:05:42.898 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:05:42.898 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:05:42.908 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:05:42.908 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:05:42.908 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:05:42.908 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:05:42.918 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:05:42.918 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:05:42.918 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:05:42.918 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:05:42.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28881 150\n [Camera]
17-03-17 19:05:43.118 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:05:43.518 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:05:43.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:05:43.518 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:43.528 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:43.528 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1081577064, 0x0, 391868352) start.
17-03-17 19:05:43.528 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:05:43.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:05:43.528 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:43.538 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:43.538 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1116999328, 0x0, 418435064) start.
17-03-17 19:05:43.718 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28881 783
17-03-17 19:05:43.858 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:05:43.898 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1081577064, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 19:05:43.898 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 19:05:43.898 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:43.898 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:43.898 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:05:43.908 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1116999328, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 19:05:43.908 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 19:05:43.908 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:43.908 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:43.918 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:05:44.058 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:05:44.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:05:44.058 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:44.058 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:05:44.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:05:44.058 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:44.058 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:44.058 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:05:44.068 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:44.068 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1439400208, 0x0, 418435064) start.
17-03-17 19:05:44.248 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:05:44.248 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:05:44.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28881 150' command took 2 ms to send, 1313 ms to get response, and 1323 ms overall
17-03-17 19:05:44.248 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.132104
17-03-17 19:05:44.248 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13210 mm
17-03-17 19:05:44.248 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:05:44.248 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:05:44.248 -07 000000623 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 19:05:44.248 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 28858, sync = True, waitForSettling = False)
17-03-17 19:05:44.248 -07 000000476 INF: Z Motor: Moving to -0.132103 mm, started at -0.131405 mm, distance = -0.70 um
17-03-17 19:05:44.248 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:44.368 -07 000000476 INF: FPGA: Xmit ZDACW 28858\n [Z Motor]
17-03-17 19:05:44.368 -07 000000502 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:05:44.368 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 117 ms overall
17-03-17 19:05:44.368 -07 000000623 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:44.368 -07 000000623 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:05:44.368 -07 000000623 INF: Y Motor: Moving 1348 steps-26
17-03-17 19:05:44.368 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 19:05:44.378 -07 000000476 INF: FPGA: 'ZDACW 28858' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-17 19:05:44.378 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:05:44.388 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:44.388 -07 000000415 INF: FPGA: Recv ZDACR 28858
17-03-17 19:05:44.398 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:05:44.398 -07 000000476 INF: Z Motor: MoveAbsStepped took 141 ms (did NOT wait for settling yet))
17-03-17 19:05:44.438 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:05:44.438 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:05:44.448 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:44.448 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1439400208, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:05:44.448 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:05:44.448 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:44.448 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:44.448 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:05:44.448 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:44.458 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:05:44.748 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:05:44.748 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 19:05:44.788 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:44.788 -07 000000626 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:05:44.798 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:05:44.798 -07 000000623 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:44.798 -07 000000623 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 19:05:44.798 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.843 mm, average velocity = 2.211 mm/sec
17-03-17 19:05:45.748 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:45.748 -07 000000626 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:05:45.758 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:45.758 -07 000000623 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:45.778 -07 000000623 INF: Y Motor: After move to 67.382607, error = -0.009560, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:05:45.778 -07 000000623 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:05:45.778 -07 000000623 INF: Y Motor: Moved to 67.3730 after 1522 ms (table move)
17-03-17 19:05:45.778 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132103 mm (DAC = 28858)
17-03-17 19:05:45.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:45.778 -07 000000561 INF: FPGA: Recv ZSGSRD 29861
17-03-17 19:05:45.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:05:45.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:45.788 -07 000000623 INF: FPGA: Recv ZSGSRD 29852
17-03-17 19:05:45.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:45.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:45.798 -07 000000433 INF: FPGA: Recv ZSGSRD 29847
17-03-17 19:05:45.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:45.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:45.808 -07 000000561 INF: FPGA: Recv ZSGSRD 29859
17-03-17 19:05:45.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:45.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:45.818 -07 000000623 INF: FPGA: Recv ZSGSRD 29858
17-03-17 19:05:45.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:45.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:45.828 -07 000000480 INF: FPGA: Recv ZSGSRD 29861
17-03-17 19:05:45.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:05:45.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:45.838 -07 000000476 INF: FPGA: Recv ZSGSRD 29854
17-03-17 19:05:45.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:45.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:45.848 -07 000000480 INF: FPGA: Recv ZSGSRD 29850
17-03-17 19:05:45.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:45.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:45.858 -07 000000433 INF: FPGA: Recv ZSGSRD 29857
17-03-17 19:05:45.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:45.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:45.868 -07 000000623 INF: FPGA: Recv ZSGSRD 29855
17-03-17 19:05:45.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:45.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:45.878 -07 000000433 INF: FPGA: Recv ZPIEZORD 25560
17-03-17 19:05:45.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:45.888 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -9.4 V.
17-03-17 19:05:45.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29855 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29856 (-131.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29847 (-131.3 uncal um), Max = 29861 (-131.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:05:45.888 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29855, posNoise = 6, negNoise = 8
17-03-17 19:05:45.888 -07 000000610 INF: Z Motor: After move to -0.132103, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:45.888 -07 000000610 INF: Z Motor: Settle wait time = 1524 ms, measure time = 108 ms (allowed 150 ms), total time = 1632 ms
17-03-17 19:05:45.888 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:05:45.938 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1684 ms
17-03-17 19:05:45.938 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:05:45.938 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.373046875, Z-position -0.132118205503408. ----------
17-03-17 19:05:45.938 -07 000000610 INF: Cycle	21	Tile	10	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:05:45.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28681, sync = True, waitForSettling = True)
17-03-17 19:05:45.938 -07 000000610 INF: Z Motor: Moving to -0.131293 mm, started at -0.132118 mm, distance = 0.83 um
17-03-17 19:05:45.938 -07 000000610 INF: FPGA: Xmit ZDACW 28681\n [Z Motor]
17-03-17 19:05:45.938 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:05:45.948 -07 000000610 INF: FPGA: 'ZDACW 28681' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:05:45.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:45.948 -07 000000502 INF: FPGA: Recv ZDACR 28681
17-03-17 19:05:45.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:45.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:05:46.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:46.108 -07 000000415 INF: FPGA: Recv ZSGSRD 29727
17-03-17 19:05:46.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:46.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:46.118 -07 000000476 INF: FPGA: Recv ZSGSRD 29725
17-03-17 19:05:46.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:46.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:46.128 -07 000000415 INF: FPGA: Recv ZSGSRD 29724
17-03-17 19:05:46.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:46.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:46.138 -07 000000623 INF: FPGA: Recv ZSGSRD 29735
17-03-17 19:05:46.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:46.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:46.148 -07 000000502 INF: FPGA: Recv ZSGSRD 29728
17-03-17 19:05:46.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:46.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:46.158 -07 000000623 INF: FPGA: Recv ZSGSRD 29725
17-03-17 19:05:46.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:46.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:46.168 -07 000000502 INF: FPGA: Recv ZSGSRD 29724
17-03-17 19:05:46.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:46.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:46.178 -07 000000593 INF: FPGA: Recv ZSGSRD 29725
17-03-17 19:05:46.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:46.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:46.188 -07 000000480 INF: FPGA: Recv ZSGSRD 29728
17-03-17 19:05:46.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:46.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:46.198 -07 000000593 INF: FPGA: Recv ZSGSRD 29726
17-03-17 19:05:46.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:46.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:46.208 -07 000000433 INF: FPGA: Recv ZPIEZORD 25361
17-03-17 19:05:46.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:46.218 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.376 V. Piezo Error = -9.6 V.
17-03-17 19:05:46.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29727 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29726 (-130.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29724 (-130.5 uncal um), Max = 29735 (-130.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:05:46.218 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29727, posNoise = 8, negNoise = 3
17-03-17 19:05:46.218 -07 000000610 INF: Z Motor: After move to -0.131293, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:46.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:05:46.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:46.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:46.218 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:46.218 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:46.218 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:05:46.218 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:46.218 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:05:46.218 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:05:46.218 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:05:46.218 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:05:46.218 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:05:46.218 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:05:46.218 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:05:46.218 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:05:46.228 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:05:46.228 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:05:46.238 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:05:46.238 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:05:46.238 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:05:46.238 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:05:46.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28858 150\n [Camera]
17-03-17 19:05:46.438 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:05:46.658 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:05:46.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:05:46.838 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:05:46.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:05:46.838 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:46.848 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:05:46.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:05:46.848 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:46.848 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:46.848 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-17 19:05:46.848 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:46.848 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:05:47.038 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28858 786
17-03-17 19:05:47.188 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:05:47.238 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:05:47.238 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:05:47.238 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:47.238 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:47.238 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:05:47.238 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:05:47.238 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:47.248 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:47.248 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:05:47.248 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:05:47.378 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:05:47.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:05:47.378 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:47.378 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:47.378 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:05:47.378 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:05:47.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:05:47.378 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:47.378 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:47.378 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1081577064, 0x0, 418435064) start.
17-03-17 19:05:47.568 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:05:47.568 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:05:47.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28858 150' command took 2 ms to send, 1313 ms to get response, and 1323 ms overall
17-03-17 19:05:47.568 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.131248
17-03-17 19:05:47.568 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13125 mm
17-03-17 19:05:47.568 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:05:47.568 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:05:47.568 -07 000000476 INF: Y Motor: Moving to 68.2126 mm, started at 67.3730 mm, delta = 0.8396 mm
17-03-17 19:05:47.568 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:47.568 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 28671, sync = True, waitForSettling = False)
17-03-17 19:05:47.568 -07 000000551 INF: Z Motor: Moving to -0.131247 mm, started at -0.131296 mm, distance = 0.05 um
17-03-17 19:05:47.578 -07 000000551 INF: FPGA: Xmit ZDACW 28671\n [Z Motor]
17-03-17 19:05:47.578 -07 000000415 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:05:47.578 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:05:47.578 -07 000000476 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:47.578 -07 000000476 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:05:47.578 -07 000000476 INF: Y Motor: Moving 1343 steps-20
17-03-17 19:05:47.578 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 19:05:47.588 -07 000000551 INF: FPGA: 'ZDACW 28671' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:47.588 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:05:47.608 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:47.608 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.02213,
17-03-17 19:05:47.608 -07 000000480 INF: FPGA: Recv ZDACR 28671
17-03-17 19:05:47.618 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:05:47.618 -07 000000551 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 19:05:47.768 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:05:47.768 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:05:47.768 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:47.768 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1081577064, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 19:05:47.768 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:05:47.768 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:47.768 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:05:47.768 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:05:47.768 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:05:47.778 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:05:47.958 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 19:05:47.958 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 19:05:47.998 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:47.998 -07 000000415 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:05:48.008 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:05:48.008 -07 000000476 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:48.008 -07 000000476 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:05:48.008 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.840 mm, average velocity = 2.175 mm/sec
17-03-17 19:05:48.958 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:48.958 -07 000000415 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:05:48.968 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:48.968 -07 000000476 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:48.978 -07 000000476 INF: Y Motor: After move to 68.212608, error = -0.006554, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:05:48.978 -07 000000476 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:05:48.978 -07 000000476 INF: Y Motor: Moved to 68.2061 after 1411 ms (table move)
17-03-17 19:05:48.988 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131247 mm (DAC = 28671)
17-03-17 19:05:48.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:48.988 -07 000000626 INF: FPGA: Recv ZSGSRD 29722
17-03-17 19:05:48.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:05:48.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:48.998 -07 000000415 INF: FPGA: Recv ZSGSRD 29717
17-03-17 19:05:49.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:49.008 -07 000000626 INF: FPGA: Recv ZSGSRD 29719
17-03-17 19:05:49.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:49.018 -07 000000551 INF: FPGA: Recv ZSGSRD 29728
17-03-17 19:05:49.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:49.028 -07 000000424 INF: FPGA: Recv ZSGSRD 29708
17-03-17 19:05:49.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:49.038 -07 000000476 INF: FPGA: Recv ZSGSRD 29721
17-03-17 19:05:49.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:49.048 -07 000000626 INF: FPGA: Recv ZSGSRD 29721
17-03-17 19:05:49.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:49.058 -07 000000551 INF: FPGA: Recv ZSGSRD 29720
17-03-17 19:05:49.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:49.068 -07 000000480 INF: FPGA: Recv ZSGSRD 29713
17-03-17 19:05:49.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:49.078 -07 000000626 INF: FPGA: Recv ZSGSRD 29717
17-03-17 19:05:49.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:49.088 -07 000000480 INF: FPGA: Recv ZPIEZORD 25358
17-03-17 19:05:49.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.098 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.375 V. Piezo Error = -9.6 V.
17-03-17 19:05:49.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29719 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29720 (-130.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 29708 (-130.4 uncal um), Max = 29728 (-130.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 19:05:49.098 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29719, posNoise = 9, negNoise = 11
17-03-17 19:05:49.098 -07 000000610 INF: Z Motor: After move to -0.131247, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:49.098 -07 000000610 INF: Z Motor: Settle wait time = 1413 ms, measure time = 108 ms (allowed 150 ms), total time = 1521 ms
17-03-17 19:05:49.098 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:05:49.148 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 19:05:49.148 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:05:49.148 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2060546875, Z-position -0.131244512652129. ----------
17-03-17 19:05:49.148 -07 000000610 INF: Cycle	21	Tile	11	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:05:49.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28494, sync = True, waitForSettling = True)
17-03-17 19:05:49.148 -07 000000610 INF: Z Motor: Moving to -0.130437 mm, started at -0.131245 mm, distance = 0.81 um
17-03-17 19:05:49.148 -07 000000610 INF: FPGA: Xmit ZDACW 28494\n [Z Motor]
17-03-17 19:05:49.148 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 19:05:49.158 -07 000000610 INF: FPGA: 'ZDACW 28494' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:05:49.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:49.158 -07 000000476 INF: FPGA: Recv ZDACR 28494
17-03-17 19:05:49.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:05:49.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:49.318 -07 000000415 INF: FPGA: Recv ZSGSRD 29593
17-03-17 19:05:49.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:49.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:49.328 -07 000000626 INF: FPGA: Recv ZSGSRD 29590
17-03-17 19:05:49.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:49.338 -07 000000480 INF: FPGA: Recv ZSGSRD 29595
17-03-17 19:05:49.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:49.348 -07 000000626 INF: FPGA: Recv ZSGSRD 29598
17-03-17 19:05:49.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:49.358 -07 000000551 INF: FPGA: Recv ZSGSRD 29595
17-03-17 19:05:49.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:49.368 -07 000000476 INF: FPGA: Recv ZSGSRD 29595
17-03-17 19:05:49.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:49.378 -07 000000424 INF: FPGA: Recv ZSGSRD 29595
17-03-17 19:05:49.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:49.388 -07 000000480 INF: FPGA: Recv ZSGSRD 29592
17-03-17 19:05:49.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:49.398 -07 000000551 INF: FPGA: Recv ZSGSRD 29594
17-03-17 19:05:49.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:49.408 -07 000000424 INF: FPGA: Recv ZSGSRD 29594
17-03-17 19:05:49.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:49.418 -07 000000415 INF: FPGA: Recv ZPIEZORD 25211
17-03-17 19:05:49.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:49.428 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.348 V. Piezo Error = -9.6 V.
17-03-17 19:05:49.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29594 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29594 (-129.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29590 (-129.6 uncal um), Max = 29598 (-129.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:05:49.428 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29594, posNoise = 4, negNoise = 4
17-03-17 19:05:49.428 -07 000000610 INF: Z Motor: After move to -0.130437, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:49.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:05:49.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:49.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:49.428 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:49.428 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:49.428 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:05:49.428 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:49.428 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:05:49.428 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:05:49.428 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:05:49.428 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:05:49.428 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:05:49.428 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:05:49.438 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:05:49.438 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:05:49.438 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:05:49.438 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:05:49.448 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:05:49.448 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:05:49.448 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:05:49.448 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:05:49.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28671 150\n [Camera]
17-03-17 19:05:49.648 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:05:50.048 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:05:50.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:05:50.048 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:50.048 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:50.048 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1116999328, 0x0, 391868352) start.
17-03-17 19:05:50.058 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:05:50.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:05:50.058 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:50.058 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:50.058 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1152421592, 0x0, 418435064) start.
17-03-17 19:05:50.248 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28671 783
17-03-17 19:05:50.388 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:05:50.428 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1152421592, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:05:50.428 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:05:50.428 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:50.438 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:50.438 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1116999328, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:05:50.438 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:05:50.438 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:50.438 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:50.438 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:05:50.438 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:05:50.588 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:05:50.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:05:50.588 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:50.588 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:50.588 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 19:05:50.588 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:05:50.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:05:50.588 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:50.588 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:50.588 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 19:05:50.778 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:05:50.778 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:05:50.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28671 150' command took 2 ms to send, 1313 ms to get response, and 1323 ms overall
17-03-17 19:05:50.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:05:50.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2060546875, Z-Position -0.130441486134409. ------
17-03-17 19:05:50.778 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:05:50.778 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13712 mm
17-03-17 19:05:50.778 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:05:50.788 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:05:50.788 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:05:50.788 -07 000000486 INF: Y Motor: Moving to 69.0426 mm, started at 68.2061 mm, delta = 0.8366 mm
17-03-17 19:05:50.788 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:50.788 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:05:50.788 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29954, sync = True, waitForSettling = False)
17-03-17 19:05:50.788 -07 000000424 INF: Z Motor: Moving to -0.137121 mm, started at -0.130441 mm, distance = -6.68 um
17-03-17 19:05:50.788 -07 000000512 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:05:50.798 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:05:50.798 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:05:50.798 -07 000000486 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:50.798 -07 000000486 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:05:50.798 -07 000000486 INF: Y Motor: Moving 1338 steps-14
17-03-17 19:05:50.808 -07 000000424 INF: FPGA: Xmit ZDACW 29954\n [Z Motor]
17-03-17 19:05:50.808 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:05:50.818 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:05:50.818 -07 000000424 INF: FPGA: 'ZDACW 29954' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:05:50.828 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:50.828 -07 000000438 INF: FPGA: Recv ZDACR 29954
17-03-17 19:05:50.838 -07 000000424 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:05:50.838 -07 000000424 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 19:05:50.968 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:05:50.968 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:05:50.968 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:50.968 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:05:50.968 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:05:50.968 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:50.978 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:50.978 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:05:50.978 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:05:50.988 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:05:50.998 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:05:50.998 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-17 19:05:51.188 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 19:05:51.188 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:05:51.228 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:51.228 -07 000000569 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:05:51.238 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:05:51.238 -07 000000486 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:51.238 -07 000000486 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:05:51.238 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.107 mm/sec
17-03-17 19:05:51.658 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:05:51.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:05:52.188 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:52.188 -07 000000512 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:05:52.198 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:52.198 -07 000000486 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:52.218 -07 000000486 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:05:52.218 -07 000000486 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:05:52.218 -07 000000486 INF: Y Motor: Moved to 69.0278 after 1429 ms (table move)
17-03-17 19:05:52.218 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137121 mm (DAC = 29954)
17-03-17 19:05:52.218 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:52.218 -07 000000486 INF: FPGA: Recv ZSGSRD 30636
17-03-17 19:05:52.228 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:05:52.228 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:52.228 -07 000000512 INF: FPGA: Recv ZSGSRD 30635
17-03-17 19:05:52.238 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:52.238 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:52.238 -07 000000512 INF: FPGA: Recv ZSGSRD 30632
17-03-17 19:05:52.248 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:52.248 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:52.248 -07 000000486 INF: FPGA: Recv ZSGSRD 30641
17-03-17 19:05:52.258 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:52.258 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:52.258 -07 000000569 INF: FPGA: Recv ZSGSRD 30634
17-03-17 19:05:52.268 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:52.268 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:52.268 -07 000000512 INF: FPGA: Recv ZSGSRD 30636
17-03-17 19:05:52.278 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:52.278 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:52.278 -07 000000512 INF: FPGA: Recv ZSGSRD 30643
17-03-17 19:05:52.288 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:52.288 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:52.288 -07 000000486 INF: FPGA: Recv ZSGSRD 30632
17-03-17 19:05:52.298 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:52.298 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:52.298 -07 000000486 INF: FPGA: Recv ZSGSRD 30634
17-03-17 19:05:52.308 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:52.308 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:52.308 -07 000000569 INF: FPGA: Recv ZSGSRD 30633
17-03-17 19:05:52.318 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:52.318 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:52.318 -07 000000512 INF: FPGA: Recv ZPIEZORD 26584
17-03-17 19:05:52.328 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:52.328 -07 000000415 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.571 V. Piezo Error = -8.9 V.
17-03-17 19:05:52.328 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30636 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30634 (-136.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30632 (-136.3 uncal um), Max = 30643 (-136.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:05:52.328 -07 000000415 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30636, posNoise = 7, negNoise = 4
17-03-17 19:05:52.328 -07 000000415 INF: Z Motor: After move to -0.137121, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:52.328 -07 000000415 INF: Z Motor: Settle wait time = 1431 ms, measure time = 106 ms (allowed 150 ms), total time = 1537 ms
17-03-17 19:05:52.328 -07 000000415 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:05:52.378 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 19:05:52.378 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:05:52.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:52.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:52.378 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:52.378 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:52.378 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:05:52.378 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:52.378 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:05:52.378 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:05:52.388 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:05:52.388 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:05:52.398 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:05:52.398 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:05:52.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:05:52.438 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:05:52.638 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:05:52.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:05:52.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:05:52.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 19:05:52.678 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:05:52.678 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 19:05:52.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 19:05:52.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:05:52.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:52.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:05:52.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:05:52.878 -07 000000415 INF: Autofocus start
17-03-17 19:05:52.878 -07 000000415 INF: MeasureProfile start
17-03-17 19:05:52.878 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:05:52.878 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:05:52.888 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:05:52.888 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:05:52.888 -07 000000415 INF: MeasureProfile done
17-03-17 19:05:52.888 -07 000000415 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:05:52.888 -07 000000415 INF: Autofocus finished
17-03-17 19:05:52.978 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.009895,
17-03-17 19:05:53.088 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:05:53.088 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:05:53.088 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.137135515186124. ----------
17-03-17 19:05:53.088 -07 000000610 INF: Cycle	21	Tile	12	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:05:53.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28461, sync = True, waitForSettling = True)
17-03-17 19:05:53.098 -07 000000610 INF: Z Motor: Moving to -0.130286 mm, started at -0.137136 mm, distance = 6.85 um
17-03-17 19:05:53.098 -07 000000610 INF: FPGA: Xmit ZDACW 28461\n [Z Motor]
17-03-17 19:05:53.098 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:05:53.108 -07 000000610 INF: FPGA: 'ZDACW 28461' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:05:53.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:53.108 -07 000000569 INF: FPGA: Recv ZDACR 28461
17-03-17 19:05:53.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:53.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:05:53.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:53.268 -07 000000512 INF: FPGA: Recv ZSGSRD 29574
17-03-17 19:05:53.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:53.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:53.278 -07 000000541 INF: FPGA: Recv ZSGSRD 29572
17-03-17 19:05:53.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:53.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:53.288 -07 000000486 INF: FPGA: Recv ZSGSRD 29569
17-03-17 19:05:53.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:53.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:53.298 -07 000000541 INF: FPGA: Recv ZSGSRD 29572
17-03-17 19:05:53.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:53.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:53.308 -07 000000486 INF: FPGA: Recv ZSGSRD 29565
17-03-17 19:05:53.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:53.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:53.318 -07 000000569 INF: FPGA: Recv ZSGSRD 29575
17-03-17 19:05:53.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:53.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:53.328 -07 000000502 INF: FPGA: Recv ZSGSRD 29571
17-03-17 19:05:53.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:53.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:53.338 -07 000000541 INF: FPGA: Recv ZSGSRD 29571
17-03-17 19:05:53.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:53.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:53.348 -07 000000486 INF: FPGA: Recv ZSGSRD 29573
17-03-17 19:05:53.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:53.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:53.358 -07 000000541 INF: FPGA: Recv ZSGSRD 29566
17-03-17 19:05:53.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:53.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:53.368 -07 000000486 INF: FPGA: Recv ZPIEZORD 25164
17-03-17 19:05:53.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:53.378 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.343 V. Piezo Error = -9.7 V.
17-03-17 19:05:53.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29571 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29572 (-129.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29565 (-129.5 uncal um), Max = 29575 (-129.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:05:53.378 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29571, posNoise = 4, negNoise = 6
17-03-17 19:05:53.378 -07 000000610 INF: Z Motor: After move to -0.130286, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:53.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:05:53.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:53.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:53.378 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:53.378 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:53.378 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:05:53.378 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:05:53.378 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:05:53.378 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:53.378 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:05:53.378 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:05:53.378 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:05:53.378 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:05:53.388 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:05:53.388 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:05:53.388 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:05:53.388 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:05:53.398 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:05:53.398 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:05:53.398 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:05:53.398 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:05:53.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28638 150\n [Camera]
17-03-17 19:05:53.598 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:05:53.998 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:05:53.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:05:53.998 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:53.998 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:53.998 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:05:53.998 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:05:53.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:05:53.998 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:53.998 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:53.998 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:05:54.188 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28638 783
17-03-17 19:05:54.338 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:05:54.378 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:05:54.378 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:05:54.378 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:54.378 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:05:54.378 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:05:54.378 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:54.378 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:54.378 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:54.378 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:05:54.388 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:05:54.528 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:05:54.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:05:54.528 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:54.528 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:54.528 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 19:05:54.538 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:05:54.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:05:54.538 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:54.538 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:54.538 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:05:54.718 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:05:54.718 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:05:54.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28638 150' command took 2 ms to send, 1316 ms to get response, and 1323 ms overall
17-03-17 19:05:54.718 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.130694
17-03-17 19:05:54.718 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13069 mm
17-03-17 19:05:54.718 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:05:54.728 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:05:54.728 -07 000000512 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 19:05:54.728 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:54.908 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:05:54.908 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:05:54.908 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:54.918 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:54.918 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:05:54.918 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 19:05:54.918 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:05:54.918 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:54.928 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:05:54.928 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:05:55.058 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 28550, sync = True, waitForSettling = False)
17-03-17 19:05:55.058 -07 000000502 INF: Z Motor: Moving to -0.130694 mm, started at -0.130294 mm, distance = -0.40 um
17-03-17 19:05:55.058 -07 000000502 INF: FPGA: Xmit ZDACW 28550\n [Z Motor]
17-03-17 19:05:55.058 -07 000000431 INF: FPGA: Recv YRDPOS 141370
17-03-17 19:05:55.058 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:05:55.058 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 328 ms to get response, and 337 ms overall
17-03-17 19:05:55.058 -07 000000512 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:55.068 -07 000000502 INF: FPGA: 'ZDACW 28550' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:05:55.068 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:55.068 -07 000000512 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:05:55.068 -07 000000512 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:05:55.068 -07 000000431 INF: FPGA: Recv ZDACR 28550
17-03-17 19:05:55.078 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:55.078 -07 000000502 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-17 19:05:55.078 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:05:55.448 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 19:05:55.448 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 19:05:55.488 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:55.488 -07 000000502 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:05:55.498 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:05:55.498 -07 000000512 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:55.498 -07 000000512 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:05:55.498 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.845 mm, average velocity = 2.189 mm/sec
17-03-17 19:05:56.448 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:56.448 -07 000000431 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:05:56.458 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.458 -07 000000512 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:56.478 -07 000000512 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:05:56.478 -07 000000512 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:05:56.478 -07 000000512 INF: Y Motor: Moved to 69.8643 after 1750 ms (table move)
17-03-17 19:05:56.478 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130694 mm (DAC = 28550)
17-03-17 19:05:56.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.478 -07 000000502 INF: FPGA: Recv ZSGSRD 29636
17-03-17 19:05:56.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:05:56.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.488 -07 000000512 INF: FPGA: Recv ZSGSRD 29632
17-03-17 19:05:56.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.498 -07 000000512 INF: FPGA: Recv ZSGSRD 29637
17-03-17 19:05:56.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.508 -07 000000512 INF: FPGA: Recv ZSGSRD 29638
17-03-17 19:05:56.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.518 -07 000000512 INF: FPGA: Recv ZSGSRD 29632
17-03-17 19:05:56.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.528 -07 000000502 INF: FPGA: Recv ZSGSRD 29638
17-03-17 19:05:56.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.538 -07 000000502 INF: FPGA: Recv ZSGSRD 29639
17-03-17 19:05:56.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.548 -07 000000512 INF: FPGA: Recv ZSGSRD 29627
17-03-17 19:05:56.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.558 -07 000000512 INF: FPGA: Recv ZSGSRD 29630
17-03-17 19:05:56.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.568 -07 000000512 INF: FPGA: Recv ZSGSRD 29635
17-03-17 19:05:56.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:56.578 -07 000000502 INF: FPGA: Recv ZPIEZORD 25322
17-03-17 19:05:56.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.588 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.356 V. Piezo Error = -9.5 V.
17-03-17 19:05:56.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29634 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29636 (-129.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29627 (-129.9 uncal um), Max = 29639 (-130.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:05:56.588 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29634, posNoise = 5, negNoise = 7
17-03-17 19:05:56.588 -07 000000610 INF: Z Motor: After move to -0.130694, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:56.588 -07 000000610 INF: Z Motor: Settle wait time = 1422 ms, measure time = 107 ms (allowed 150 ms), total time = 1529 ms
17-03-17 19:05:56.588 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:05:56.638 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1911 ms
17-03-17 19:05:56.638 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:05:56.638 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.130698454620079. ----------
17-03-17 19:05:56.638 -07 000000610 INF: Cycle	21	Tile	13	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:05:56.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28373, sync = True, waitForSettling = True)
17-03-17 19:05:56.638 -07 000000610 INF: Z Motor: Moving to -0.129883 mm, started at -0.130698 mm, distance = 0.82 um
17-03-17 19:05:56.638 -07 000000610 INF: FPGA: Xmit ZDACW 28373\n [Z Motor]
17-03-17 19:05:56.638 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:05:56.648 -07 000000610 INF: FPGA: 'ZDACW 28373' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:05:56.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:56.648 -07 000000512 INF: FPGA: Recv ZDACR 28373
17-03-17 19:05:56.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:05:56.658 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:05:56.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:05:56.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.808 -07 000000502 INF: FPGA: Recv ZSGSRD 29515
17-03-17 19:05:56.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:05:56.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.818 -07 000000476 INF: FPGA: Recv ZSGSRD 29510
17-03-17 19:05:56.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.828 -07 000000502 INF: FPGA: Recv ZSGSRD 29507
17-03-17 19:05:56.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.838 -07 000000476 INF: FPGA: Recv ZSGSRD 29506
17-03-17 19:05:56.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.848 -07 000000623 INF: FPGA: Recv ZSGSRD 29508
17-03-17 19:05:56.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.858 -07 000000623 INF: FPGA: Recv ZSGSRD 29509
17-03-17 19:05:56.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.868 -07 000000502 INF: FPGA: Recv ZSGSRD 29501
17-03-17 19:05:56.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.878 -07 000000623 INF: FPGA: Recv ZSGSRD 29512
17-03-17 19:05:56.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.888 -07 000000502 INF: FPGA: Recv ZSGSRD 29510
17-03-17 19:05:56.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:05:56.898 -07 000000623 INF: FPGA: Recv ZSGSRD 29509
17-03-17 19:05:56.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:05:56.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:05:56.908 -07 000000424 INF: FPGA: Recv ZPIEZORD 25146
17-03-17 19:05:56.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:05:56.918 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.329 V. Piezo Error = -9.6 V.
17-03-17 19:05:56.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29509 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29509 (-129.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29501 (-129.1 uncal um), Max = 29515 (-129.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:05:56.918 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29509, posNoise = 6, negNoise = 8
17-03-17 19:05:56.918 -07 000000610 INF: Z Motor: After move to -0.129883, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:05:56.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:05:56.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:05:56.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:05:56.918 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:05:56.918 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:05:56.918 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:05:56.918 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:05:56.918 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:05:56.918 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:05:56.918 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:05:56.918 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:05:56.918 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:05:56.918 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:05:56.918 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:05:56.918 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:05:56.918 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:05:56.918 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:05:56.928 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:05:56.928 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:05:56.928 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:05:56.928 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:05:56.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28550 150\n [Camera]
17-03-17 19:05:57.138 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:05:57.528 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:05:57.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:05:57.538 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:57.538 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:05:57.538 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:57.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:05:57.538 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:05:57.538 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:57.548 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:57.548 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:05:57.728 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28550 783
17-03-17 19:05:57.878 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:05:57.908 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 19:05:57.908 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 19:05:57.908 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:57.918 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:05:57.918 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:05:57.918 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:05:57.918 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:05:57.918 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:57.928 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:57.928 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:05:58.068 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:05:58.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:05:58.068 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:05:58.068 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:05:58.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:05:58.068 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:05:58.068 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:05:58.068 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:05:58.078 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:05:58.078 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:05:58.258 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:05:58.258 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:05:58.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28550 150' command took 2 ms to send, 1315 ms to get response, and 1324 ms overall
17-03-17 19:05:58.258 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.130233
17-03-17 19:05:58.258 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13023 mm
17-03-17 19:05:58.258 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:05:58.368 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:05:58.368 -07 000000480 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 19:05:58.368 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 28449, sync = True, waitForSettling = False)
17-03-17 19:05:58.368 -07 000000623 INF: Z Motor: Moving to -0.130231 mm, started at -0.129895 mm, distance = -0.34 um
17-03-17 19:05:58.378 -07 000000623 INF: FPGA: Xmit ZDACW 28449\n [Z Motor]
17-03-17 19:05:58.378 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.011254,
17-03-17 19:05:58.378 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:05:58.388 -07 000000623 INF: FPGA: 'ZDACW 28449' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:05:58.388 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:58.408 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:05:58.458 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:05:58.458 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:05:58.458 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:58.468 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:05:58.468 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:05:58.468 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:05:58.468 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:58.468 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:05:58.468 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:05:58.478 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:05:59.248 -07 000000424 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:05:59.248 -07 000000424 INF: FPGA: Recv ZDACR 28449
17-03-17 19:05:59.248 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 830 ms to get response, and 860 ms overall
17-03-17 19:05:59.248 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 850 ms to get response, and 874 ms overall
17-03-17 19:05:59.248 -07 000000480 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:59.248 -07 000000480 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:05:59.248 -07 000000480 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:05:59.248 -07 000000623 INF: Z Motor: MoveAbsStepped took 875 ms (did NOT wait for settling yet))
17-03-17 19:05:59.258 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:05:59.628 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 19:05:59.628 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 19:05:59.668 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:05:59.668 -07 000000626 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:05:59.678 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:05:59.678 -07 000000480 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:05:59.678 -07 000000480 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:05:59.678 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.838 mm, average velocity = 2.172 mm/sec
17-03-17 19:06:00.628 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:06:00.628 -07 000000626 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:06:00.638 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:00.638 -07 000000480 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:06:00.658 -07 000000480 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:06:00.658 -07 000000480 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:06:00.658 -07 000000480 INF: Y Motor: Moved to 70.6895 after 2285 ms (table move)
17-03-17 19:06:00.658 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130231 mm (DAC = 28449)
17-03-17 19:06:00.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:00.658 -07 000000623 INF: FPGA: Recv ZSGSRD 29565
17-03-17 19:06:00.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:06:00.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:00.668 -07 000000462 INF: FPGA: Recv ZSGSRD 29554
17-03-17 19:06:00.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:00.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:00.678 -07 000000462 INF: FPGA: Recv ZSGSRD 29560
17-03-17 19:06:00.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:00.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:00.688 -07 000000623 INF: FPGA: Recv ZSGSRD 29563
17-03-17 19:06:00.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:00.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:00.698 -07 000000626 INF: FPGA: Recv ZSGSRD 29565
17-03-17 19:06:00.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:00.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:00.708 -07 000000480 INF: FPGA: Recv ZSGSRD 29561
17-03-17 19:06:00.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:00.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:00.718 -07 000000626 INF: FPGA: Recv ZSGSRD 29566
17-03-17 19:06:00.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:00.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:00.728 -07 000000623 INF: FPGA: Recv ZSGSRD 29570
17-03-17 19:06:00.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:00.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:00.738 -07 000000424 INF: FPGA: Recv ZSGSRD 29570
17-03-17 19:06:00.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:00.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:00.748 -07 000000480 INF: FPGA: Recv ZSGSRD 29559
17-03-17 19:06:00.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:00.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:06:00.758 -07 000000623 INF: FPGA: Recv ZPIEZORD 25249
17-03-17 19:06:00.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:00.768 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.341 V. Piezo Error = -9.5 V.
17-03-17 19:06:00.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29563 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29564 (-129.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29554 (-129.4 uncal um), Max = 29570 (-129.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:06:00.768 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29563, posNoise = 7, negNoise = 9
17-03-17 19:06:00.768 -07 000000610 INF: Z Motor: After move to -0.130231, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:06:00.768 -07 000000610 INF: Z Motor: Settle wait time = 2288 ms, measure time = 106 ms (allowed 150 ms), total time = 2394 ms
17-03-17 19:06:00.768 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:06:00.818 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2552 ms
17-03-17 19:06:00.818 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:06:00.818 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.130242335558014. ----------
17-03-17 19:06:00.818 -07 000000610 INF: Cycle	21	Tile	14	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:06:00.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28273, sync = True, waitForSettling = True)
17-03-17 19:06:00.818 -07 000000610 INF: Z Motor: Moving to -0.129425 mm, started at -0.130242 mm, distance = 0.82 um
17-03-17 19:06:00.818 -07 000000610 INF: FPGA: Xmit ZDACW 28273\n [Z Motor]
17-03-17 19:06:00.818 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:06:00.828 -07 000000610 INF: FPGA: 'ZDACW 28273' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:06:00.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:06:00.828 -07 000000623 INF: FPGA: Recv ZDACR 28273
17-03-17 19:06:00.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:00.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:06:00.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:00.988 -07 000000424 INF: FPGA: Recv ZSGSRD 29434
17-03-17 19:06:00.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:06:00.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:00.998 -07 000000480 INF: FPGA: Recv ZSGSRD 29436
17-03-17 19:06:01.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:01.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:01.008 -07 000000438 INF: FPGA: Recv ZSGSRD 29437
17-03-17 19:06:01.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:01.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:01.018 -07 000000480 INF: FPGA: Recv ZSGSRD 29442
17-03-17 19:06:01.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:01.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:01.028 -07 000000623 INF: FPGA: Recv ZSGSRD 29436
17-03-17 19:06:01.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:01.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:01.038 -07 000000462 INF: FPGA: Recv ZSGSRD 29433
17-03-17 19:06:01.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:01.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:01.048 -07 000000424 INF: FPGA: Recv ZSGSRD 29435
17-03-17 19:06:01.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:01.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:01.058 -07 000000462 INF: FPGA: Recv ZSGSRD 29435
17-03-17 19:06:01.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:01.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:01.068 -07 000000480 INF: FPGA: Recv ZSGSRD 29434
17-03-17 19:06:01.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:01.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:01.078 -07 000000462 INF: FPGA: Recv ZSGSRD 29435
17-03-17 19:06:01.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:01.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:06:01.088 -07 000000424 INF: FPGA: Recv ZPIEZORD 25060
17-03-17 19:06:01.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:01.098 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.314 V. Piezo Error = -9.6 V.
17-03-17 19:06:01.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29436 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29435 (-128.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29433 (-128.6 uncal um), Max = 29442 (-128.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:06:01.098 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29436, posNoise = 6, negNoise = 3
17-03-17 19:06:01.098 -07 000000610 INF: Z Motor: After move to -0.129425, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:06:01.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:06:01.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:06:01.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:06:01.098 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:06:01.098 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:06:01.098 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:06:01.098 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:06:01.098 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:06:01.098 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:06:01.098 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:06:01.098 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:06:01.098 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:06:01.098 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:06:01.098 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:06:01.098 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:06:01.098 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:06:01.098 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:06:01.108 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:06:01.108 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:06:01.108 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:06:01.108 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:06:01.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28449 150\n [Camera]
17-03-17 19:06:01.318 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:06:01.658 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:06:01.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:06:01.708 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:06:01.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:06:01.708 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:06:01.718 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:06:01.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:06:01.718 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:06:01.718 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:06:01.718 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:06:01.718 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:06:01.718 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:06:01.908 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28449 783
17-03-17 19:06:02.058 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:06:02.098 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:06:02.098 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:06:02.098 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:02.098 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:06:02.098 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:06:02.098 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:02.098 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:06:02.098 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:06:02.098 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:06:02.108 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:06:02.248 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:06:02.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:06:02.248 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:06:02.248 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:06:02.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:06:02.248 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:06:02.258 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:06:02.258 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:06:02.258 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:06:02.258 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:06:02.438 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-17 19:06:02.438 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:06:02.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28449 150' command took 2 ms to send, 1317 ms to get response, and 1327 ms overall
17-03-17 19:06:02.438 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.130095
17-03-17 19:06:02.448 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13010 mm
17-03-17 19:06:02.448 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:06:02.448 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:06:02.448 -07 000000462 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-17 19:06:02.448 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:06:02.448 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 28419, sync = True, waitForSettling = False)
17-03-17 19:06:02.448 -07 000000626 INF: Z Motor: Moving to -0.130094 mm, started at -0.129426 mm, distance = -0.67 um
17-03-17 19:06:02.448 -07 000000623 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:06:02.458 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:06:02.458 -07 000000462 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:06:02.458 -07 000000462 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:06:02.458 -07 000000462 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:06:02.458 -07 000000626 INF: FPGA: Xmit ZDACW 28419\n [Z Motor]
17-03-17 19:06:02.458 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:06:02.468 -07 000000626 INF: FPGA: 'ZDACW 28419' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:06:02.468 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:06:02.468 -07 000000433 INF: FPGA: Recv ZDACR 28419
17-03-17 19:06:02.478 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:06:02.478 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:02.478 -07 000000626 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 19:06:02.658 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:06:02.658 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:06:02.658 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:02.658 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:06:02.658 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:06:02.658 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:02.658 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:06:02.658 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 19:06:02.658 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:06:02.668 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 19:06:02.848 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 19:06:02.848 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:06:02.888 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:06:02.888 -07 000000433 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:06:02.898 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:02.898 -07 000000462 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:06:02.898 -07 000000462 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:06:02.898 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.118 mm/sec
17-03-17 19:06:03.848 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:06:03.848 -07 000000561 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:06:03.858 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:03.858 -07 000000462 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:06:03.878 -07 000000462 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:06:03.878 -07 000000462 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:06:03.878 -07 000000462 INF: Y Motor: Moved to 71.5200 after 1429 ms (table move)
17-03-17 19:06:03.878 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130094 mm (DAC = 28419)
17-03-17 19:06:03.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:03.878 -07 000000462 INF: FPGA: Recv ZSGSRD 29540
17-03-17 19:06:03.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:06:03.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:03.888 -07 000000462 INF: FPGA: Recv ZSGSRD 29535
17-03-17 19:06:03.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:03.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:03.898 -07 000000462 INF: FPGA: Recv ZSGSRD 29531
17-03-17 19:06:03.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:03.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:03.908 -07 000000561 INF: FPGA: Recv ZSGSRD 29535
17-03-17 19:06:03.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:03.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:03.918 -07 000000623 INF: FPGA: Recv ZSGSRD 29542
17-03-17 19:06:03.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:03.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:03.928 -07 000000541 INF: FPGA: Recv ZSGSRD 29558
17-03-17 19:06:03.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:03.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:03.938 -07 000000541 INF: FPGA: Recv ZSGSRD 29527
17-03-17 19:06:03.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:03.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:03.948 -07 000000541 INF: FPGA: Recv ZSGSRD 29539
17-03-17 19:06:03.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:03.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:03.958 -07 000000569 INF: FPGA: Recv ZSGSRD 29540
17-03-17 19:06:03.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:03.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:03.968 -07 000000541 INF: FPGA: Recv ZSGSRD 29534
17-03-17 19:06:03.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:03.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:06:03.978 -07 000000424 INF: FPGA: Recv ZPIEZORD 25229
17-03-17 19:06:03.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:03.988 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.336 V. Piezo Error = -9.5 V.
17-03-17 19:06:03.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29538 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29537 (-129.3 uncal um), StdDev = 8 (0.1 uncal um), Range = 31 (0.2 uncal um), Min = 29527 (-129.2 uncal um), Max = 29558 (-129.4 uncal um), Pos Noise = 20 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 19:06:03.988 -07 000000610 INF: Z Motor: ADC noise = 20, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29538, posNoise = 20, negNoise = 11
17-03-17 19:06:03.988 -07 000000610 INF: Z Motor: After move to -0.130094, error = 0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:06:03.988 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 106 ms (allowed 150 ms), total time = 1537 ms
17-03-17 19:06:03.988 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:06:04.038 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 19:06:04.038 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:06:04.038 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.13008173025447. ----------
17-03-17 19:06:04.038 -07 000000610 INF: Cycle	21	Tile	15	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:06:04.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28243, sync = True, waitForSettling = True)
17-03-17 19:06:04.038 -07 000000610 INF: Z Motor: Moving to -0.129288 mm, started at -0.130082 mm, distance = 0.79 um
17-03-17 19:06:04.038 -07 000000610 INF: FPGA: Xmit ZDACW 28243\n [Z Motor]
17-03-17 19:06:04.038 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:06:04.048 -07 000000610 INF: FPGA: 'ZDACW 28243' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:06:04.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:06:04.048 -07 000000541 INF: FPGA: Recv ZDACR 28243
17-03-17 19:06:04.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:04.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:06:04.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:04.208 -07 000000541 INF: FPGA: Recv ZSGSRD 29411
17-03-17 19:06:04.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:06:04.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:04.218 -07 000000424 INF: FPGA: Recv ZSGSRD 29415
17-03-17 19:06:04.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:04.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:04.228 -07 000000623 INF: FPGA: Recv ZSGSRD 29418
17-03-17 19:06:04.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:04.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:04.238 -07 000000541 INF: FPGA: Recv ZSGSRD 29414
17-03-17 19:06:04.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:04.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:04.248 -07 000000424 INF: FPGA: Recv ZSGSRD 29422
17-03-17 19:06:04.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:04.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:04.258 -07 000000569 INF: FPGA: Recv ZSGSRD 29417
17-03-17 19:06:04.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:04.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:04.268 -07 000000541 INF: FPGA: Recv ZSGSRD 29410
17-03-17 19:06:04.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:04.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:04.278 -07 000000623 INF: FPGA: Recv ZSGSRD 29413
17-03-17 19:06:04.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:04.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:04.298 -07 000000569 INF: FPGA: Recv ZSGSRD 29416
17-03-17 19:06:04.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:06:04.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:04.308 -07 000000424 INF: FPGA: Recv ZSGSRD 29415
17-03-17 19:06:04.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:04.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:06:04.318 -07 000000623 INF: FPGA: Recv ZPIEZORD 25100
17-03-17 19:06:04.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:04.328 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.310 V. Piezo Error = -9.5 V.
17-03-17 19:06:04.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29415 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29415 (-128.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29410 (-128.5 uncal um), Max = 29422 (-128.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:06:04.328 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29415, posNoise = 7, negNoise = 5
17-03-17 19:06:04.328 -07 000000610 INF: Z Motor: After move to -0.129288, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:06:04.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 19:06:04.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:06:04.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:06:04.328 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:06:04.328 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:06:04.328 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:06:04.328 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:06:04.328 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:06:04.328 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:06:04.328 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:06:04.328 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:06:04.328 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:06:04.328 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:06:04.338 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:06:04.338 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:06:04.338 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:06:04.338 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:06:04.338 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:06:04.338 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:06:04.348 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:06:04.348 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:06:04.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28419 150\n [Camera]
17-03-17 19:06:04.548 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:06:04.608 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 4.004458,
17-03-17 19:06:04.948 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:06:04.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:06:04.948 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:06:04.948 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:06:04.948 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1081577064, 0x0, 391868352) start.
17-03-17 19:06:04.948 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:06:04.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:06:04.948 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:06:04.948 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:06:04.948 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1116999328, 0x0, 418435064) start.
17-03-17 19:06:05.138 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28419 783
17-03-17 19:06:05.288 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:06:05.338 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1116999328, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 19:06:05.338 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:06:05.338 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:05.338 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1081577064, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:06:05.338 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:06:05.338 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:05.338 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:06:05.338 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:06:05.338 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:06:05.348 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:06:05.478 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:06:05.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:06:05.478 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:06:05.478 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:06:05.478 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1152421592, 0x0, 391868352) start.
17-03-17 19:06:05.478 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:06:05.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:06:05.478 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:06:05.478 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:06:05.478 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:06:05.668 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-17 19:06:05.668 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:06:05.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28419 150' command took 2 ms to send, 1316 ms to get response, and 1324 ms overall
17-03-17 19:06:05.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:06:05.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52001953125, Z-Position -0.129291552161034. ------
17-03-17 19:06:05.678 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:06:05.678 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13530 mm
17-03-17 19:06:05.678 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:06:05.678 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:06:05.678 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:06:05.678 -07 000000512 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 19:06:05.678 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29557, sync = True, waitForSettling = False)
17-03-17 19:06:05.678 -07 000000424 INF: Z Motor: Moving to -0.135303 mm, started at -0.129292 mm, distance = -6.01 um
17-03-17 19:06:05.688 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:06:05.688 -07 000000424 INF: FPGA: Xmit ZDACW 29557\n [Z Motor]
17-03-17 19:06:05.688 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:06:05.698 -07 000000424 INF: FPGA: 'ZDACW 29557' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:06:05.698 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:06:05.708 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:06:05.708 -07 000000415 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:06:05.718 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:06:05.718 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 19:06:05.718 -07 000000512 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:06:05.718 -07 000000512 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:06:05.718 -07 000000512 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:06:05.718 -07 000000541 INF: FPGA: Recv ZDACR 29557
17-03-17 19:06:05.728 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:06:05.728 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:06:05.728 -07 000000424 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 19:06:05.858 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1152421592, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:06:05.858 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:06:05.858 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:05.858 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:06:05.858 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:06:05.858 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:05.868 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:06:05.868 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:06:05.868 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:06:05.878 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:06:05.898 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:06:05.898 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-17 19:06:06.098 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:06:06.098 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:06:06.138 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:06:06.138 -07 000000476 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:06:06.148 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:06:06.148 -07 000000512 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:06:06.148 -07 000000512 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:06:06.148 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.177 mm/sec
17-03-17 19:06:06.658 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:06:06.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:06:07.098 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:06:07.098 -07 000000424 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:06:07.108 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:06:07.108 -07 000000512 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:06:07.128 -07 000000512 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:06:07.128 -07 000000512 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:06:07.128 -07 000000512 INF: Y Motor: Moved to 72.3501 after 1445 ms (table move)
17-03-17 19:06:07.128 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135303 mm (DAC = 29557)
17-03-17 19:06:07.128 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:07.138 -07 000000623 INF: FPGA: Recv ZSGSRD 30355
17-03-17 19:06:07.138 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:06:07.138 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:07.138 -07 000000476 INF: FPGA: Recv ZSGSRD 30354
17-03-17 19:06:07.148 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:07.148 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:07.148 -07 000000593 INF: FPGA: Recv ZSGSRD 30350
17-03-17 19:06:07.158 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:07.158 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:07.158 -07 000000593 INF: FPGA: Recv ZSGSRD 30346
17-03-17 19:06:07.168 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:07.168 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:07.168 -07 000000512 INF: FPGA: Recv ZSGSRD 30350
17-03-17 19:06:07.178 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:07.178 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:07.748 -07 000000541 INF: FPGA: Recv ZSGSRD 30354
17-03-17 19:06:07.748 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 560 ms to get response, and 570 ms overall
17-03-17 19:06:07.748 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:07.748 -07 000000415 INF: FPGA: Recv ZSGSRD 30360
17-03-17 19:06:07.758 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:07.758 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:07.758 -07 000000476 INF: FPGA: Recv ZSGSRD 30358
17-03-17 19:06:07.768 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:07.768 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:07.768 -07 000000541 INF: FPGA: Recv ZSGSRD 30348
17-03-17 19:06:07.778 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:07.778 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:07.778 -07 000000512 INF: FPGA: Recv ZSGSRD 30352
17-03-17 19:06:07.788 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:07.788 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:06:07.788 -07 000000431 INF: FPGA: Recv ZPIEZORD 26295
17-03-17 19:06:07.798 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:07.798 -07 000000569 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.510 V. Piezo Error = -8.9 V.
17-03-17 19:06:07.798 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30353 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30353 (-134.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30346 (-134.5 uncal um), Max = 30360 (-134.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:06:07.798 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30353, posNoise = 7, negNoise = 7
17-03-17 19:06:07.798 -07 000000569 INF: Z Motor: After move to -0.135303, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:06:07.798 -07 000000569 INF: Z Motor: Settle wait time = 1448 ms, measure time = 665 ms (allowed 150 ms), total time = 2113 ms
17-03-17 19:06:07.798 -07 000000569 INF: Z Motor: Warning: Actual position measuring time = 665 ms, longer than max expected time of 150 ms
17-03-17 19:06:07.798 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2118 ms
17-03-17 19:06:07.798 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:06:07.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:06:07.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:06:07.798 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:06:07.798 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:06:07.798 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:06:07.798 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:06:07.798 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:06:07.798 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:06:07.808 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:06:07.808 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:06:07.818 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:06:07.818 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 19:06:07.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:06:07.868 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:06:08.058 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:06:08.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:06:08.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:06:08.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610603336, 0x0, 559484976) start.
17-03-17 19:06:08.098 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:06:08.108 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 19:06:08.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:06:08.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610603336, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 19:06:08.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:08.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:06:08.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 19:06:08.208 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:06:08.208 -07 000000476 INF: Autofocus start
17-03-17 19:06:08.208 -07 000000476 INF: MeasureProfile start
17-03-17 19:06:08.208 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:06:08.218 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:06:08.218 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:06:08.228 -07 000000476 INF: MeasureProfile done
17-03-17 19:06:08.228 -07 000000476 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:06:08.228 -07 000000476 INF: Autofocus finished
17-03-17 19:06:08.418 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:06:08.418 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:06:08.418 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135317463150005. ----------
17-03-17 19:06:08.418 -07 000000610 INF: Cycle	21	Tile	16	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:06:08.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28081, sync = True, waitForSettling = True)
17-03-17 19:06:08.428 -07 000000610 INF: Z Motor: Moving to -0.128547 mm, started at -0.135317 mm, distance = 6.77 um
17-03-17 19:06:08.428 -07 000000610 INF: FPGA: Xmit ZDACW 28081\n [Z Motor]
17-03-17 19:06:08.428 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:06:08.438 -07 000000610 INF: FPGA: 'ZDACW 28081' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:06:08.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:06:08.438 -07 000000415 INF: FPGA: Recv ZDACR 28081
17-03-17 19:06:08.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:08.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:06:08.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:08.598 -07 000000476 INF: FPGA: Recv ZSGSRD 29296
17-03-17 19:06:08.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:06:08.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:08.608 -07 000000623 INF: FPGA: Recv ZSGSRD 29304
17-03-17 19:06:08.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:08.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:08.618 -07 000000476 INF: FPGA: Recv ZSGSRD 29301
17-03-17 19:06:08.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:08.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:08.628 -07 000000415 INF: FPGA: Recv ZSGSRD 29298
17-03-17 19:06:08.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:08.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:08.638 -07 000000541 INF: FPGA: Recv ZSGSRD 29298
17-03-17 19:06:08.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:08.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:08.648 -07 000000551 INF: FPGA: Recv ZSGSRD 29301
17-03-17 19:06:08.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:08.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:08.658 -07 000000476 INF: FPGA: Recv ZSGSRD 29304
17-03-17 19:06:08.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:08.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:08.668 -07 000000431 INF: FPGA: Recv ZSGSRD 29299
17-03-17 19:06:08.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:08.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:08.678 -07 000000541 INF: FPGA: Recv ZSGSRD 29296
17-03-17 19:06:08.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:08.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:08.688 -07 000000541 INF: FPGA: Recv ZSGSRD 29300
17-03-17 19:06:08.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:08.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:06:08.698 -07 000000623 INF: FPGA: Recv ZPIEZORD 24936
17-03-17 19:06:08.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:08.708 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.285 V. Piezo Error = -9.6 V.
17-03-17 19:06:08.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29300 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29300 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29296 (-127.8 uncal um), Max = 29304 (-127.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:06:08.708 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29300, posNoise = 4, negNoise = 4
17-03-17 19:06:08.708 -07 000000610 INF: Z Motor: After move to -0.128547, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:06:08.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:06:08.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:06:08.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:06:08.708 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:06:08.708 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:06:08.708 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:06:08.708 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:06:08.708 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:06:08.708 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:06:08.708 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:06:08.708 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:06:08.708 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:06:08.708 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:06:08.718 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:06:08.718 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:06:08.718 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:06:08.718 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:06:08.728 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:06:08.728 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:06:08.728 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:06:08.728 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:06:08.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28257 150\n [Camera]
17-03-17 19:06:08.928 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:06:09.328 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:06:09.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:06:09.328 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:06:09.328 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:06:09.328 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:06:09.328 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:06:09.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:06:09.328 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:06:09.328 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:06:09.328 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:06:09.518 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28257 783
17-03-17 19:06:09.668 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:06:09.698 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:06:09.698 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:06:09.708 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:09.708 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:06:09.708 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:06:09.708 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:09.708 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:06:09.708 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:06:09.708 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:06:09.718 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:06:09.858 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:06:09.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:06:09.858 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:06:09.858 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:06:09.858 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 19:06:09.868 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:06:09.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:06:09.868 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:06:09.868 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:06:09.868 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 19:06:09.988 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.99219,
17-03-17 19:06:10.048 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:06:10.048 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:06:10.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28257 150' command took 2 ms to send, 1319 ms to get response, and 1326 ms overall
17-03-17 19:06:10.058 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.129113
17-03-17 19:06:10.058 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12911 mm
17-03-17 19:06:10.058 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:06:10.058 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:06:10.058 -07 000000476 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 19:06:10.058 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:06:10.058 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 28205, sync = True, waitForSettling = False)
17-03-17 19:06:10.058 -07 000000541 INF: Z Motor: Moving to -0.129114 mm, started at -0.128553 mm, distance = -0.56 um
17-03-17 19:06:10.058 -07 000000431 INF: FPGA: Recv YRDPOS 148174
17-03-17 19:06:10.068 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:06:10.068 -07 000000476 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:06:10.068 -07 000000541 INF: FPGA: Xmit ZDACW 28205\n [Z Motor]
17-03-17 19:06:10.068 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:06:10.068 -07 000000476 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:06:10.068 -07 000000476 INF: Y Motor: Moving 1347 steps-26
17-03-17 19:06:10.078 -07 000000541 INF: FPGA: 'ZDACW 28205' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:06:10.078 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:06:10.078 -07 000000415 INF: FPGA: Recv ZDACR 28205
17-03-17 19:06:10.088 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:10.088 -07 000000541 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 19:06:10.088 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:06:10.258 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:06:10.258 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:06:10.258 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:10.258 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:06:10.258 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:06:10.258 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:10.268 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:06:10.268 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:06:10.268 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:06:10.268 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 19:06:10.458 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 19:06:10.458 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:06:10.498 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:06:10.498 -07 000000541 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:06:10.508 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:06:10.508 -07 000000476 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:06:10.508 -07 000000476 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 19:06:10.508 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.843 mm, average velocity = 2.138 mm/sec
17-03-17 19:06:11.458 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:06:11.458 -07 000000415 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:06:11.468 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.468 -07 000000476 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:06:11.488 -07 000000476 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:06:11.488 -07 000000476 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:06:11.488 -07 000000476 INF: Y Motor: Moved to 73.1768 after 1425 ms (table move)
17-03-17 19:06:11.488 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129114 mm (DAC = 28205)
17-03-17 19:06:11.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.488 -07 000000476 INF: FPGA: Recv ZSGSRD 29384
17-03-17 19:06:11.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:06:11.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.498 -07 000000569 INF: FPGA: Recv ZSGSRD 29379
17-03-17 19:06:11.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.508 -07 000000476 INF: FPGA: Recv ZSGSRD 29391
17-03-17 19:06:11.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.518 -07 000000569 INF: FPGA: Recv ZSGSRD 29390
17-03-17 19:06:11.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.528 -07 000000476 INF: FPGA: Recv ZSGSRD 29388
17-03-17 19:06:11.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.538 -07 000000541 INF: FPGA: Recv ZSGSRD 29396
17-03-17 19:06:11.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.548 -07 000000476 INF: FPGA: Recv ZSGSRD 29391
17-03-17 19:06:11.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.558 -07 000000541 INF: FPGA: Recv ZSGSRD 29390
17-03-17 19:06:11.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.568 -07 000000486 INF: FPGA: Recv ZSGSRD 29380
17-03-17 19:06:11.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.578 -07 000000541 INF: FPGA: Recv ZSGSRD 29385
17-03-17 19:06:11.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:06:11.588 -07 000000541 INF: FPGA: Recv ZPIEZORD 25076
17-03-17 19:06:11.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.598 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.304 V. Piezo Error = -9.5 V.
17-03-17 19:06:11.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29387 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29389 (-128.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29379 (-128.3 uncal um), Max = 29396 (-128.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:06:11.598 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29387, posNoise = 9, negNoise = 8
17-03-17 19:06:11.598 -07 000000610 INF: Z Motor: After move to -0.129114, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:06:11.598 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 106 ms (allowed 150 ms), total time = 1534 ms
17-03-17 19:06:11.598 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:06:11.648 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 19:06:11.648 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:06:11.648 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.129111674221064. ----------
17-03-17 19:06:11.648 -07 000000610 INF: Cycle	21	Tile	17	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:06:11.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28028, sync = True, waitForSettling = True)
17-03-17 19:06:11.648 -07 000000610 INF: Z Motor: Moving to -0.128304 mm, started at -0.129112 mm, distance = 0.81 um
17-03-17 19:06:11.648 -07 000000610 INF: FPGA: Xmit ZDACW 28028\n [Z Motor]
17-03-17 19:06:11.648 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:06:11.658 -07 000000610 INF: FPGA: 'ZDACW 28028' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:06:11.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:06:11.658 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:06:11.658 -07 000000569 INF: FPGA: Recv ZDACR 28028
17-03-17 19:06:11.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:06:11.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:06:11.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.818 -07 000000433 INF: FPGA: Recv ZSGSRD 29260
17-03-17 19:06:11.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:06:11.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.828 -07 000000561 INF: FPGA: Recv ZSGSRD 29261
17-03-17 19:06:11.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.838 -07 000000502 INF: FPGA: Recv ZSGSRD 29263
17-03-17 19:06:11.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.848 -07 000000541 INF: FPGA: Recv ZSGSRD 29270
17-03-17 19:06:11.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.858 -07 000000626 INF: FPGA: Recv ZSGSRD 29264
17-03-17 19:06:11.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.868 -07 000000480 INF: FPGA: Recv ZSGSRD 29264
17-03-17 19:06:11.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.878 -07 000000415 INF: FPGA: Recv ZSGSRD 29260
17-03-17 19:06:11.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.888 -07 000000486 INF: FPGA: Recv ZSGSRD 29261
17-03-17 19:06:11.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.898 -07 000000626 INF: FPGA: Recv ZSGSRD 29260
17-03-17 19:06:11.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:11.908 -07 000000561 INF: FPGA: Recv ZSGSRD 29261
17-03-17 19:06:11.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:06:11.918 -07 000000623 INF: FPGA: Recv ZPIEZORD 24919
17-03-17 19:06:11.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:11.928 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.277 V. Piezo Error = -9.5 V.
17-03-17 19:06:11.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29262 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29261 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29260 (-127.5 uncal um), Max = 29270 (-127.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 19:06:11.928 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29262, posNoise = 8, negNoise = 2
17-03-17 19:06:11.928 -07 000000610 INF: Z Motor: After move to -0.128304, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:06:11.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:06:11.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:06:11.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:06:11.928 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:06:11.928 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:06:11.928 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:06:11.928 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:06:11.928 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:06:11.928 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:06:11.928 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:06:11.928 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:06:11.928 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:06:11.928 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:06:11.928 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:06:11.928 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:06:11.938 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:06:11.938 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:06:11.938 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:06:11.938 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:06:11.938 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:06:11.938 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:06:11.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28205 150\n [Camera]
17-03-17 19:06:12.148 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:06:12.548 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:06:12.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:06:12.548 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:06:12.548 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:06:12.548 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:06:12.548 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:06:12.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:06:12.548 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:06:12.548 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:06:12.548 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 19:06:12.738 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28205 784
17-03-17 19:06:12.888 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:06:12.928 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:06:12.928 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:06:12.928 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:12.928 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:06:12.928 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:06:12.928 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:12.928 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:06:12.928 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:06:12.928 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:06:12.938 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:06:13.078 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:06:13.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:06:13.078 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:06:13.078 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:06:13.078 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 19:06:13.078 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:06:13.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:06:13.078 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:06:13.078 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:06:13.078 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:06:13.268 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-17 19:06:13.268 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:06:13.268 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28205 150' command took 2 ms to send, 1316 ms to get response, and 1324 ms overall
17-03-17 19:06:13.268 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.128743
17-03-17 19:06:13.268 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12874 mm
17-03-17 19:06:13.268 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:06:13.278 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:06:13.278 -07 000000512 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 19:06:13.278 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:06:13.278 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 28124, sync = True, waitForSettling = False)
17-03-17 19:06:13.278 -07 000000438 INF: Z Motor: Moving to -0.128743 mm, started at -0.128309 mm, distance = -0.43 um
17-03-17 19:06:13.278 -07 000000626 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:06:13.288 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:06:13.288 -07 000000512 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:06:13.288 -07 000000512 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:06:13.288 -07 000000512 INF: Y Motor: Moving 1353 steps-32
17-03-17 19:06:13.288 -07 000000438 INF: FPGA: Xmit ZDACW 28124\n [Z Motor]
17-03-17 19:06:13.288 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:06:13.298 -07 000000438 INF: FPGA: 'ZDACW 28124' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:06:13.298 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:06:13.298 -07 000000561 INF: FPGA: Recv ZDACR 28124
17-03-17 19:06:13.308 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:13.308 -07 000000438 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-17 19:06:13.308 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:06:13.488 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 408 ms.
17-03-17 19:06:13.488 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:06:13.488 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:13.488 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 406 ms.
17-03-17 19:06:13.488 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 19:06:13.488 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:13.488 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:06:13.488 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 19:06:13.488 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:06:13.498 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 19:06:13.678 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 19:06:13.678 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:06:13.708 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:06:13.708 -07 000000476 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:06:13.718 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:06:13.718 -07 000000512 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:06:13.718 -07 000000512 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:06:13.718 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.125 mm/sec
17-03-17 19:06:14.668 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:06:14.668 -07 000000480 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:06:14.678 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:06:14.678 -07 000000512 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:06:14.688 -07 000000512 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:06:14.688 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:06:14.688 -07 000000512 INF: Y Motor: Moved to 74.0088 after 1414 ms (table move)
17-03-17 19:06:14.688 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128743 mm (DAC = 28124)
17-03-17 19:06:14.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:14.698 -07 000000626 INF: FPGA: Recv ZSGSRD 29333
17-03-17 19:06:14.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:06:14.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:14.698 -07 000000561 INF: FPGA: Recv ZSGSRD 29331
17-03-17 19:06:14.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:06:14.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:14.708 -07 000000480 INF: FPGA: Recv ZSGSRD 29331
17-03-17 19:06:14.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:14.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:14.718 -07 000000438 INF: FPGA: Recv ZSGSRD 29330
17-03-17 19:06:14.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:14.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:14.728 -07 000000476 INF: FPGA: Recv ZSGSRD 29334
17-03-17 19:06:14.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:14.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:14.738 -07 000000561 INF: FPGA: Recv ZSGSRD 29333
17-03-17 19:06:14.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:14.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:14.748 -07 000000480 INF: FPGA: Recv ZSGSRD 29333
17-03-17 19:06:14.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:14.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:14.758 -07 000000561 INF: FPGA: Recv ZSGSRD 29334
17-03-17 19:06:14.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:14.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:14.768 -07 000000476 INF: FPGA: Recv ZSGSRD 29327
17-03-17 19:06:14.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:14.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:14.778 -07 000000438 INF: FPGA: Recv ZSGSRD 29322
17-03-17 19:06:14.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:14.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:06:14.788 -07 000000480 INF: FPGA: Recv ZPIEZORD 25025
17-03-17 19:06:14.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:14.798 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.291 V. Piezo Error = -9.5 V.
17-03-17 19:06:14.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29331 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29332 (-128.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29322 (-127.9 uncal um), Max = 29334 (-128.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:06:14.798 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29331, posNoise = 3, negNoise = 9
17-03-17 19:06:14.798 -07 000000610 INF: Z Motor: After move to -0.128743, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:06:14.798 -07 000000610 INF: Z Motor: Settle wait time = 1415 ms, measure time = 103 ms (allowed 150 ms), total time = 1518 ms
17-03-17 19:06:14.798 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:06:14.848 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1571 ms
17-03-17 19:06:14.848 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:06:14.848 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.128751918341126. ----------
17-03-17 19:06:14.848 -07 000000610 INF: Cycle	21	Tile	18	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:06:14.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27947, sync = True, waitForSettling = True)
17-03-17 19:06:14.848 -07 000000610 INF: Z Motor: Moving to -0.127933 mm, started at -0.128752 mm, distance = 0.82 um
17-03-17 19:06:14.848 -07 000000610 INF: FPGA: Xmit ZDACW 27947\n [Z Motor]
17-03-17 19:06:14.848 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:06:14.858 -07 000000610 INF: FPGA: 'ZDACW 27947' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:06:14.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:06:14.858 -07 000000476 INF: FPGA: Recv ZDACR 27947
17-03-17 19:06:14.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:14.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:06:15.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:15.018 -07 000000626 INF: FPGA: Recv ZSGSRD 29208
17-03-17 19:06:15.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:06:15.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:15.038 -07 000000438 INF: FPGA: Recv ZSGSRD 29203
17-03-17 19:06:15.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:06:15.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:15.048 -07 000000561 INF: FPGA: Recv ZSGSRD 29204
17-03-17 19:06:15.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:15.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:15.058 -07 000000480 INF: FPGA: Recv ZSGSRD 29201
17-03-17 19:06:15.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:15.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:15.068 -07 000000476 INF: FPGA: Recv ZSGSRD 29208
17-03-17 19:06:15.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:15.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:15.078 -07 000000626 INF: FPGA: Recv ZSGSRD 29204
17-03-17 19:06:15.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:15.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:15.088 -07 000000476 INF: FPGA: Recv ZSGSRD 29202
17-03-17 19:06:15.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:15.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:15.098 -07 000000438 INF: FPGA: Recv ZSGSRD 29200
17-03-17 19:06:15.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:15.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:15.108 -07 000000626 INF: FPGA: Recv ZSGSRD 29205
17-03-17 19:06:15.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:15.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:15.118 -07 000000480 INF: FPGA: Recv ZSGSRD 29205
17-03-17 19:06:15.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:15.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:06:15.128 -07 000000626 INF: FPGA: Recv ZPIEZORD 24872
17-03-17 19:06:15.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:15.138 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.264 V. Piezo Error = -9.5 V.
17-03-17 19:06:15.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29204 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29204 (-127.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29200 (-127.1 uncal um), Max = 29208 (-127.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:06:15.138 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29204, posNoise = 4, negNoise = 4
17-03-17 19:06:15.138 -07 000000610 INF: Z Motor: After move to -0.127933, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:06:15.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-17 19:06:15.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:06:15.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:06:15.138 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:06:15.138 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:06:15.138 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:06:15.138 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:06:15.138 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:06:15.138 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:06:15.138 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:06:15.138 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:06:15.138 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:06:15.138 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:06:15.148 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:06:15.148 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:06:15.148 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:06:15.148 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:06:15.158 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:06:15.158 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:06:15.158 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:06:15.158 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:06:15.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28124 150\n [Camera]
17-03-17 19:06:15.348 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.979922,
17-03-17 19:06:15.358 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:06:15.758 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:06:15.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:06:15.758 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:06:15.758 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:06:15.758 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 19:06:15.768 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:06:15.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:06:15.768 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:06:15.768 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:06:15.768 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 19:06:15.958 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28124 783
17-03-17 19:06:16.098 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:06:16.148 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:06:16.148 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:06:16.148 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:16.148 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:06:16.148 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:06:16.148 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:16.148 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:06:16.158 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:06:16.158 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:06:16.158 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:06:16.298 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:06:16.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:06:16.298 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:06:16.298 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:06:16.298 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 19:06:16.298 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:06:16.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:06:16.298 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:06:16.298 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:06:16.298 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 19:06:16.488 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:06:16.488 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:06:16.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28124 150' command took 2 ms to send, 1313 ms to get response, and 1323 ms overall
17-03-17 19:06:16.488 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.128239
17-03-17 19:06:16.488 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.12824 mm
17-03-17 19:06:16.488 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:06:16.488 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:06:16.488 -07 000000593 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 19:06:16.488 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:06:16.488 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 28014, sync = True, waitForSettling = False)
17-03-17 19:06:16.488 -07 000000476 INF: Z Motor: Moving to -0.128240 mm, started at -0.127936 mm, distance = -0.30 um
17-03-17 19:06:16.498 -07 000000476 INF: FPGA: Xmit ZDACW 28014\n [Z Motor]
17-03-17 19:06:16.498 -07 000000551 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:06:16.498 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:06:16.498 -07 000000593 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:06:16.498 -07 000000593 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:06:16.498 -07 000000593 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:06:16.498 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:06:16.508 -07 000000476 INF: FPGA: 'ZDACW 28014' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:16.508 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:06:16.518 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:06:16.518 -07 000000551 INF: FPGA: Recv ZDACR 28014
17-03-17 19:06:16.528 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:06:16.528 -07 000000476 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 19:06:16.658 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:06:16.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 20. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=235, R2=255, Total=490. Warn if over 250 bubbles per interval.
17-03-17 19:06:16.678 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:06:16.678 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:06:16.678 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:16.678 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:06:16.678 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:06:16.678 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:16.678 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:06:16.678 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:06:16.678 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:06:16.688 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:06:16.878 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:06:16.878 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 19:06:16.908 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:06:16.908 -07 000000486 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:06:16.918 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:16.918 -07 000000593 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:06:16.918 -07 000000593 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 19:06:16.918 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.186 mm/sec
17-03-17 19:06:17.868 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:06:17.868 -07 000000541 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:06:17.878 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:06:17.878 -07 000000593 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:06:17.888 -07 000000593 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:06:17.888 -07 000000593 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:06:17.888 -07 000000593 INF: Y Motor: Moved to 74.8325 after 1397 ms (table move)
17-03-17 19:06:17.888 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128240 mm (DAC = 28014)
17-03-17 19:06:17.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:17.898 -07 000000541 INF: FPGA: Recv ZSGSRD 29247
17-03-17 19:06:17.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:06:17.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:17.898 -07 000000551 INF: FPGA: Recv ZSGSRD 29258
17-03-17 19:06:17.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:06:17.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:17.908 -07 000000561 INF: FPGA: Recv ZSGSRD 29248
17-03-17 19:06:17.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:17.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:17.918 -07 000000551 INF: FPGA: Recv ZSGSRD 29248
17-03-17 19:06:17.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:17.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:17.928 -07 000000561 INF: FPGA: Recv ZSGSRD 29247
17-03-17 19:06:17.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:17.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:17.938 -07 000000551 INF: FPGA: Recv ZSGSRD 29253
17-03-17 19:06:17.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:17.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:17.948 -07 000000593 INF: FPGA: Recv ZSGSRD 29259
17-03-17 19:06:17.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:17.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:17.958 -07 000000476 INF: FPGA: Recv ZSGSRD 29258
17-03-17 19:06:17.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:17.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:17.968 -07 000000593 INF: FPGA: Recv ZSGSRD 29256
17-03-17 19:06:17.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:17.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:17.978 -07 000000486 INF: FPGA: Recv ZSGSRD 29254
17-03-17 19:06:17.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:17.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:06:17.988 -07 000000541 INF: FPGA: Recv ZPIEZORD 24946
17-03-17 19:06:17.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:17.998 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.275 V. Piezo Error = -9.5 V.
17-03-17 19:06:17.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29253 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29254 (-127.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29247 (-127.4 uncal um), Max = 29259 (-127.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:06:17.998 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29253, posNoise = 6, negNoise = 6
17-03-17 19:06:17.998 -07 000000610 INF: Z Motor: After move to -0.128240, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:06:17.998 -07 000000610 INF: Z Motor: Settle wait time = 1397 ms, measure time = 103 ms (allowed 150 ms), total time = 1500 ms
17-03-17 19:06:17.998 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:06:18.048 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1554 ms
17-03-17 19:06:18.048 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:06:18.048 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.128250829794068. ----------
17-03-17 19:06:18.048 -07 000000610 INF: Cycle	21	Tile	19	Exposure Settings		A	398	G	191	T	191	C	398
17-03-17 19:06:18.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27837, sync = True, waitForSettling = True)
17-03-17 19:06:18.048 -07 000000610 INF: Z Motor: Moving to -0.127430 mm, started at -0.128251 mm, distance = 0.82 um
17-03-17 19:06:18.048 -07 000000610 INF: FPGA: Xmit ZDACW 27837\n [Z Motor]
17-03-17 19:06:18.048 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:06:18.058 -07 000000610 INF: FPGA: 'ZDACW 27837' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:06:18.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:06:18.058 -07 000000541 INF: FPGA: Recv ZDACR 27837
17-03-17 19:06:18.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:06:18.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:06:18.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:18.218 -07 000000593 INF: FPGA: Recv ZSGSRD 29127
17-03-17 19:06:18.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:06:18.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:18.228 -07 000000541 INF: FPGA: Recv ZSGSRD 29128
17-03-17 19:06:18.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:18.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:18.238 -07 000000551 INF: FPGA: Recv ZSGSRD 29119
17-03-17 19:06:18.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:18.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:18.248 -07 000000541 INF: FPGA: Recv ZSGSRD 29126
17-03-17 19:06:18.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:18.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:18.258 -07 000000551 INF: FPGA: Recv ZSGSRD 29126
17-03-17 19:06:18.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:18.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:18.268 -07 000000476 INF: FPGA: Recv ZSGSRD 29129
17-03-17 19:06:18.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:18.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:18.278 -07 000000551 INF: FPGA: Recv ZSGSRD 29127
17-03-17 19:06:18.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:18.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:18.288 -07 000000541 INF: FPGA: Recv ZSGSRD 29123
17-03-17 19:06:18.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:18.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:18.298 -07 000000551 INF: FPGA: Recv ZSGSRD 29128
17-03-17 19:06:18.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:18.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:06:18.308 -07 000000561 INF: FPGA: Recv ZSGSRD 29129
17-03-17 19:06:18.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:18.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:06:18.318 -07 000000486 INF: FPGA: Recv ZPIEZORD 24799
17-03-17 19:06:18.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:06:18.328 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.248 V. Piezo Error = -9.5 V.
17-03-17 19:06:18.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29126 (-126.7 uncal um), Error = 0.8 uncal um, Median = 29127 (-126.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29119 (-126.6 uncal um), Max = 29129 (-126.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:06:18.328 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29126, posNoise = 3, negNoise = 7
17-03-17 19:06:18.328 -07 000000610 INF: Z Motor: After move to -0.127430, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:06:18.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:06:18.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:06:18.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:06:18.328 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:06:18.328 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:06:18.328 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:06:18.328 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:06:18.328 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:06:18.328 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:06:18.328 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:06:18.328 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:06:18.328 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:06:18.328 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:06:18.338 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:06:18.338 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:06:18.338 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:06:18.338 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:06:18.348 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:06:18.348 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:06:18.348 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:06:18.348 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:06:18.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28014 150\n [Camera]
17-03-17 19:06:18.548 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:06:18.948 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 19:06:18.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 19:06:18.948 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:06:18.948 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:06:18.948 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 19:06:18.958 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 19:06:18.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 19:06:18.958 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:06:18.958 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:06:18.958 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 19:06:19.148 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28014 785
17-03-17 19:06:19.288 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:06:19.328 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:06:19.328 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:06:19.328 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:19.328 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:06:19.328 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:06:19.328 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:19.328 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:06:19.338 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:06:19.338 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:06:19.348 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:06:19.488 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:06:19.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:06:19.488 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:06:19.488 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:06:19.488 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 19:06:19.488 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:06:19.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:06:19.488 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:06:19.488 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:06:19.488 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 19:06:19.678 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:06:19.678 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:06:19.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28014 150' command took 2 ms to send, 1313 ms to get response, and 1323 ms overall
17-03-17 19:06:19.868 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:06:19.868 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:06:19.868 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:19.868 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:06:19.868 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:06:19.868 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:06:19.878 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:06:19.878 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:06:19.878 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:06:19.878 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:06:19.878 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:06:19.918 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 19:06:19.918 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:06:19.958 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 19:06:19.978 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 19:06:19.978 -07 000000610 INF: Imaging Cycle 21: ScanTilesCommand Cycle 21 time end. Duration was 140315 ms.
17-03-17 19:06:19.978 -07 000000610 INF: =================== Cycle #21 ===================
17-03-17 19:06:19.978 -07 000000610 INF: ===================  ===================
17-03-17 19:06:19.978 -07 000000593 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:06:19.978 -07 000000486 INF: FPGA: Recv EXLED1ADCR 28
17-03-17 19:06:19.988 -07 000000593 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:06:19.988 -07 000000593 INF: GreenLED: Using Green data: Photodiode ADC 28 --> 0.0 mW (old method), or 2.1 mW (new method). Difference = 2.1 mW
17-03-17 19:06:19.988 -07 000000593 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 21, FrontChillerTemperature: 3.979922, FrontChillerHeatSinkTemperature: 0.267847, AmbientTemperature: 18.89984, FlowCellCompartmentTemperature: 21.99692, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.83634, GreenLEDSensorTemperature: 24.73605, PhotodiodePowerAdcGreen: 28, PhotodiodePowerMwGreen: 2.10942
17-03-17 19:06:19.998 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.