17-03-17 19:10:57.188 -07 000000610 INF: =================== Cycle #23 ===================
17-03-17 19:10:57.188 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 19:10:57.188 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-17 19:10:57.188 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:10:57.188 -07 000000478 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:10:57.198 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:10:57.198 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:10:57.198 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 19:10:57.198 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 19:10:57.198 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 19:10:57.308 -07 000000618 INF: FPGA: Recv YMVTO 154377 871
17-03-17 19:10:57.308 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 115 ms overall
17-03-17 19:10:57.308 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 19:10:57.308 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 871 steps (0.544 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 19:10:57.308 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 115 ms, distance = 0.548 mm, average velocity = 4.761 mm/sec
17-03-17 19:10:59.998 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.99219,
17-03-17 19:11:00.308 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:11:00.308 -07 000000478 INF: FPGA: Recv YRDPOS 154380
17-03-17 19:11:00.318 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:11:00.318 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:11:00.328 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:11:00.338 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 19:11:00.338 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3147 ms
17-03-17 19:11:00.338 -07 000000610 INF: =================== Cycle #23, Flow Cell Temp 60° ===================
17-03-17 19:11:00.338 -07 000000610 INF: =================== Cycle #23, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 19:11:00.338 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 19:11:00.348 -07 000000512 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:11:00.358 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:11:00.358 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:11:00.358 -07 000000382 INF: FPGA: Recv TEC2EN 
17-03-17 19:11:00.368 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:11:00.368 -07 000000610 INF: =================== Cycle #23, Flow Cell Temp 60° ===================
17-03-17 19:11:00.368 -07 000000610 INF: =================== Cycle #23 ===================
17-03-17 19:11:00.368 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:11:00.368 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:11:00.398 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:11:00.398 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 19:11:00.398 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:11:00.698 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:11:00.718 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:11:00.718 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:11:00.768 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:11:00.788 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:11:00.788 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:11:00.888 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3) ===================
17-03-17 19:11:00.888 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:11:00.888 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:11:00.918 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:11:00.918 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:11:00.918 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:11:01.048 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:11:01.088 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:11:01.658 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:11:01.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=256, R2=273, Total=529. Warn if over 250 bubbles per interval.
17-03-17 19:11:04.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:04.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:11:04.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:04.698 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:11:05.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:05.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:05.148 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:11:05.148 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3) ===================
17-03-17 19:11:05.278 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:11:05.308 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:11:05.308 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:11:05.358 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.018051,
17-03-17 19:11:05.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:11:05.468 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:11:05.468 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:11:05.468 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:11:05.598 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:11:05.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:06.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:06.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:06.088 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:11:06.088 -07 000000610 INF: =================== Cycle #23 ===================
17-03-17 19:11:06.658 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:11:06.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=256, R2=273, Total=529. Warn if over 250 bubbles per interval.
17-03-17 19:11:07.308 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:11:07.308 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 19:11:07.308 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:11:07.328 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:11:07.328 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 19:11:07.328 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 19:11:07.468 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:11:07.488 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 19:11:07.488 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 19:11:07.538 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:11:07.558 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:11:07.558 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:11:07.658 -07 000000610 INF: =================== Cycle #23, Pumping Reagent CMS (4) ===================
17-03-17 19:11:07.658 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:11:07.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:11:07.688 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:11:07.688 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:11:07.688 -07 000000610 INF: =================== Cycle #23, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 19:11:07.818 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:11:07.858 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:11:09.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:09.328 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:11:09.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:09.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:09.778 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 19:11:09.778 -07 000000610 INF: =================== Cycle #23, Pumping Reagent CMS (4) ===================
17-03-17 19:11:09.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:11:09.938 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:11:09.938 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:11:10.068 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:11:10.098 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:11:10.098 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:11:10.098 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:11:10.228 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:11:10.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:10.688 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:10.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:10.718 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:11:10.718 -07 000000610 INF: =================== Cycle #23 ===================
17-03-17 19:11:10.718 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.043918,
17-03-17 19:11:11.658 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:11:11.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=256, R2=273, Total=529. Warn if over 250 bubbles per interval.
17-03-17 19:11:11.938 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:11:11.938 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:11:11.938 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:11:11.958 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:11:11.958 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 19:11:11.958 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 19:11:12.108 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:11:12.128 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 19:11:12.128 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 19:11:12.178 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:11:12.198 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:11:12.198 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:11:12.298 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3) ===================
17-03-17 19:11:12.298 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:11:12.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:11:12.328 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:11:12.328 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:11:12.328 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:11:12.458 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:11:12.498 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:11:13.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:13.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:13.398 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 19:11:13.398 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3) ===================
17-03-17 19:11:13.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:11:13.558 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:11:13.558 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:11:13.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:11:13.718 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:11:13.718 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:11:13.718 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:11:13.848 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:11:13.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:14.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:14.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:14.338 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:11:14.338 -07 000000610 INF: =================== Cycle #23 ===================
17-03-17 19:11:14.338 -07 000000512 INF: WaitCommand(10000) start
17-03-17 19:11:14.338 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:11:14.338 -07 000000502 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:11:15.558 -07 000000502 INF: AsyncDelayTimer waited 1214ms
17-03-17 19:11:15.558 -07 000000502 INF: LanePump: Xmit /1?\r
17-03-17 19:11:15.588 -07 000000502 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:11:15.588 -07 000000502 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:11:15.718 -07 000000502 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:11:15.758 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:11:16.078 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.016692,
17-03-17 19:11:16.748 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:11:16.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=256, R2=273, Total=529. Warn if over 250 bubbles per interval.
17-03-17 19:11:17.288 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:17.318 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:11:17.738 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:17.768 -07 000000502 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:17.768 -07 000000502 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:11:17.768 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:11:17.768 -07 000000502 INF: ===================  ===================
17-03-17 19:11:21.658 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:11:21.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=256, R2=273, Total=529. Warn if over 250 bubbles per interval.
17-03-17 19:11:22.088 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.005817,
17-03-17 19:11:24.348 -07 000000512 INF: WaitCommand(10000) end
17-03-17 19:11:24.348 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3) ===================
17-03-17 19:11:24.348 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 19:11:24.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:11:24.378 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:11:24.378 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:11:24.378 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:11:24.508 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 19:11:24.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:11:26.658 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:11:26.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=256, R2=273, Total=529. Warn if over 250 bubbles per interval.
17-03-17 19:11:27.448 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.001704,
17-03-17 19:11:30.678 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:30.708 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:11:31.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:31.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:11:31.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:31.608 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:11:31.658 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:11:31.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=256, R2=273, Total=529. Warn if over 250 bubbles per interval.
17-03-17 19:11:32.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:32.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:11:32.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:32.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:32.508 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 19:11:32.508 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3) ===================
17-03-17 19:11:32.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:11:32.668 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:11:32.668 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:11:32.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:11:32.808 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.98264,
17-03-17 19:11:32.828 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:11:32.828 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:11:32.828 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:11:32.958 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:11:32.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:33.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:33.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:33.448 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:11:33.448 -07 000000610 INF: =================== Cycle #23 ===================
17-03-17 19:11:34.668 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:11:34.668 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 19:11:34.668 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:11:34.688 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:11:34.688 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 19:11:34.688 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 19:11:34.898 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:11:34.918 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 19:11:34.918 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 19:11:34.968 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:11:34.988 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:11:34.988 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:11:35.088 -07 000000610 INF: =================== Cycle #23, Pumping Reagent IMT (1) ===================
17-03-17 19:11:35.088 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:11:35.088 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:11:35.118 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:11:35.118 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:11:35.118 -07 000000610 INF: =================== Cycle #23, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 19:11:35.248 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:11:35.288 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:11:36.658 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:11:36.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=256, R2=273, Total=529. Warn if over 250 bubbles per interval.
17-03-17 19:11:36.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:36.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:11:37.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:37.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:37.208 -07 000000610 INF: LanePump: Waited 1921 ms for pump motion to complete
17-03-17 19:11:37.208 -07 000000610 INF: =================== Cycle #23, Pumping Reagent IMT (1) ===================
17-03-17 19:11:37.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:11:37.368 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:11:37.368 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:11:37.498 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:11:37.528 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:11:37.528 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:11:37.528 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:11:37.658 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:11:37.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:38.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:38.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:38.148 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:11:38.148 -07 000000610 INF: =================== Cycle #23 ===================
17-03-17 19:11:38.168 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.981281,
17-03-17 19:11:39.368 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:11:39.368 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:11:39.368 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:11:39.388 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:11:39.388 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 19:11:39.388 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:11:39.618 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:11:39.638 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 19:11:39.638 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 19:11:39.688 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:11:39.708 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:11:39.708 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:11:39.808 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3) ===================
17-03-17 19:11:39.808 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:11:39.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:11:39.838 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:11:39.838 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:11:39.838 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:11:39.968 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:11:40.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:11:40.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:40.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:40.908 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:11:40.908 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3) ===================
17-03-17 19:11:41.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:11:41.068 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:11:41.068 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:11:41.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:11:41.228 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:11:41.228 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:11:41.228 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:11:41.358 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:11:41.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:41.658 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 19:11:41.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=257, R2=273, Total=530. Warn if over 250 bubbles per interval.
17-03-17 19:11:41.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:11:41.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:11:41.848 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:11:41.848 -07 000000610 INF: =================== Cycle #23 ===================
17-03-17 19:11:41.848 -07 000000610 INF: =================== Cycle #23, Flow Cell Temp 65° ===================
17-03-17 19:11:41.848 -07 000000610 INF: =================== Cycle #23, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 19:11:41.848 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 19:11:41.848 -07 000000512 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:11:41.858 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:11:41.858 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:11:41.858 -07 000000569 INF: FPGA: Recv TEC2EN 
17-03-17 19:11:41.868 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:11:41.868 -07 000000610 INF: =================== Cycle #23, Flow Cell Temp 65° ===================
17-03-17 19:11:41.868 -07 000000610 INF: =================== Cycle #23 ===================
17-03-17 19:11:41.868 -07 000000610 INF: WaitCommand(30000) start
17-03-17 19:11:43.528 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.974486,
17-03-17 19:11:46.668 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 19:11:46.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=257, R2=274, Total=531. Warn if over 250 bubbles per interval.
17-03-17 19:11:48.888 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.985358,
17-03-17 19:11:51.668 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:11:51.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=257, R2=274, Total=531. Warn if over 250 bubbles per interval.
17-03-17 19:11:54.248 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.018051,
17-03-17 19:11:56.668 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:11:56.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=257, R2=274, Total=531. Warn if over 250 bubbles per interval.
17-03-17 19:11:59.608 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.041198,
17-03-17 19:12:01.668 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:12:01.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=257, R2=274, Total=531. Warn if over 250 bubbles per interval.
17-03-17 19:12:04.968 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.999021,
17-03-17 19:12:06.668 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:12:06.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=257, R2=274, Total=531. Warn if over 250 bubbles per interval.
17-03-17 19:12:10.328 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.028963,
17-03-17 19:12:11.668 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:12:11.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=257, R2=274, Total=531. Warn if over 250 bubbles per interval.
17-03-17 19:12:11.878 -07 000000610 INF: WaitCommand(30000) end
17-03-17 19:12:11.878 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3) ===================
17-03-17 19:12:11.878 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 19:12:11.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:12:12.008 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:12:12.008 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:12:12.008 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:12:12.138 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 19:12:12.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:12:12.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:12:12.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:12:12.748 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 19:12:12.748 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3) ===================
17-03-17 19:12:12.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:12:12.908 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:12:12.908 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:12:13.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:12:13.068 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:12:13.068 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:12:13.068 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:12:13.198 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:12:13.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:12:13.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:12:13.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:12:13.688 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:12:13.688 -07 000000610 INF: =================== Cycle #23 ===================
17-03-17 19:12:13.688 -07 000000561 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:12:13.688 -07 000000569 INF: WaitCommand(30000) start
17-03-17 19:12:13.688 -07 000000561 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:12:14.908 -07 000000561 INF: AsyncDelayTimer waited 1215ms
17-03-17 19:12:14.908 -07 000000561 INF: LanePump: Xmit /1?\r
17-03-17 19:12:14.938 -07 000000561 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:12:14.938 -07 000000561 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:12:15.068 -07 000000561 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:12:15.108 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:12:15.688 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.030322,
17-03-17 19:12:16.668 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:12:16.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=257, R2=274, Total=531. Warn if over 250 bubbles per interval.
17-03-17 19:12:17.448 -07 000000561 INF: LanePump: Xmit /1Q\r
17-03-17 19:12:17.478 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:12:17.898 -07 000000561 INF: LanePump: Xmit /1Q\r
17-03-17 19:12:17.928 -07 000000561 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:12:17.928 -07 000000561 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 19:12:17.928 -07 000000561 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:12:17.928 -07 000000561 INF: ===================  ===================
17-03-17 19:12:21.048 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.005817,
17-03-17 19:12:21.668 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:12:21.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=257, R2=274, Total=531. Warn if over 250 bubbles per interval.
17-03-17 19:12:26.408 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.0344,
17-03-17 19:12:26.668 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:12:26.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=257, R2=274, Total=531. Warn if over 250 bubbles per interval.
17-03-17 19:12:31.668 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:12:31.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=257, R2=274, Total=531. Warn if over 250 bubbles per interval.
17-03-17 19:12:31.768 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.001704,
17-03-17 19:12:36.668 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:12:36.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=257, R2=274, Total=531. Warn if over 250 bubbles per interval.
17-03-17 19:12:37.128 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.997626,
17-03-17 19:12:41.668 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:12:41.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=257, R2=274, Total=531. Warn if over 250 bubbles per interval.
17-03-17 19:12:42.488 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.990831,
17-03-17 19:12:43.698 -07 000000569 INF: WaitCommand(30000) end
17-03-17 19:12:43.698 -07 000000610 INF: =================== Cycle #23, Flow Cell Temp 22° ===================
17-03-17 19:12:43.698 -07 000000610 INF: =================== Cycle #23, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 19:12:43.698 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 19:12:43.708 -07 000000561 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:12:43.708 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:12:43.708 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:12:43.708 -07 000000502 INF: FPGA: Recv TEC2EN 
17-03-17 19:12:43.718 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:12:43.718 -07 000000610 INF: =================== Cycle #23, Flow Cell Temp 22° ===================
17-03-17 19:12:43.718 -07 000000610 INF: =================== Cycle #23 ===================
17-03-17 19:12:43.718 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3) ===================
17-03-17 19:12:43.718 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:12:43.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:12:43.758 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:12:43.758 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:12:43.758 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:12:43.888 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:12:43.928 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:12:46.668 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:12:46.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=257, R2=274, Total=531. Warn if over 250 bubbles per interval.
17-03-17 19:12:47.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:12:47.088 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:12:47.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:12:47.538 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:12:47.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:12:48.678 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.969015,
17-03-17 19:12:48.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:12:48.688 -07 000000610 INF: LanePump: Waited 4759 ms for pump motion to complete
17-03-17 19:12:48.688 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3) ===================
17-03-17 19:12:48.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:12:48.848 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:12:48.848 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:12:48.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:12:49.008 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:12:49.008 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:12:49.008 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:12:49.138 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:12:49.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:12:49.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:12:49.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:12:49.628 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:12:49.628 -07 000000610 INF: =================== Cycle #23 ===================
17-03-17 19:12:50.848 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:12:50.848 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 19:12:50.848 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:12:50.868 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:12:50.868 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 19:12:50.868 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 19:12:51.018 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:12:51.038 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:12:51.038 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:12:51.088 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:12:51.108 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:12:51.108 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:12:51.208 -07 000000610 INF: =================== Cycle #23, Pumping Reagent USM (2) ===================
17-03-17 19:12:51.208 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:12:51.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:12:51.238 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:12:51.238 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:12:51.238 -07 000000610 INF: =================== Cycle #23, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 19:12:51.368 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:12:51.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:12:51.668 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:12:51.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=257, R2=274, Total=531. Warn if over 250 bubbles per interval.
17-03-17 19:12:52.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:12:52.878 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:12:53.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:12:53.328 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:12:53.328 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:12:53.328 -07 000000610 INF: =================== Cycle #23, Pumping Reagent USM (2) ===================
17-03-17 19:12:53.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:12:53.488 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:12:53.488 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:12:53.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:12:53.648 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:12:53.648 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:12:53.648 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:12:53.778 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:12:53.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:12:54.038 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.98264,
17-03-17 19:12:54.238 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:12:54.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:12:54.268 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:12:54.268 -07 000000610 INF: =================== Cycle #23 ===================
17-03-17 19:12:55.488 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:12:55.488 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:12:55.488 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:12:55.508 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:12:55.508 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 19:12:55.508 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:12:56.268 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:12:56.288 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:12:56.288 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:12:56.338 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:12:56.358 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:12:56.358 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:12:56.458 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3) ===================
17-03-17 19:12:56.458 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:12:56.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:12:56.488 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:12:56.488 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:12:56.488 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:12:56.618 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:12:56.658 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:12:56.668 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 19:12:56.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:12:57.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:12:57.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:12:57.558 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:12:57.558 -07 000000610 INF: =================== Cycle #23, Pumping Reagent PR2 (3) ===================
17-03-17 19:12:57.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:12:57.718 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:12:57.718 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:12:57.848 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:12:57.878 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:12:57.878 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:12:57.878 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:12:58.008 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:12:58.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:12:58.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:12:58.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:12:58.498 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:12:58.498 -07 000000610 INF: =================== Cycle #23 ===================
17-03-17 19:12:58.498 -07 000000512 INF: WaitCommand(10000) start
17-03-17 19:12:58.498 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:12:58.498 -07 000000569 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:12:59.398 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.999021,
17-03-17 19:12:59.718 -07 000000569 INF: AsyncDelayTimer waited 1214ms
17-03-17 19:12:59.718 -07 000000569 INF: LanePump: Xmit /1?\r
17-03-17 19:12:59.748 -07 000000569 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:12:59.748 -07 000000569 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:12:59.878 -07 000000569 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:12:59.918 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:13:01.448 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-17 19:13:01.478 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:13:01.668 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:13:01.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:13:01.898 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-17 19:13:01.928 -07 000000569 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:13:01.928 -07 000000569 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:13:01.928 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:13:01.928 -07 000000569 INF: ===================  ===================
17-03-17 19:13:04.758 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.008536,
17-03-17 19:13:06.668 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:13:06.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:13:08.508 -07 000000512 INF: WaitCommand(10000) end
17-03-17 19:13:08.518 -07 000000610 INF: =================== Cycle #23, Imaging ===================
17-03-17 19:13:08.518 -07 000000610 INF: Imaging Cycle 23: ScanTilesCommand Cycle 23 time start.
17-03-17 19:13:08.518 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 19:13:08.518 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:13:08.538 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:13:08.538 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 19:13:08.538 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 19:13:08.838 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:13:08.858 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:13:08.858 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:13:08.908 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:13:08.928 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:13:08.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:13:08.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:13:08.928 -07 000000569 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 19:13:08.928 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:13:08.928 -07 000000569 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 19:13:08.928 -07 000000012 INF: FPGA: Recv EXLED1ON 
17-03-17 19:13:08.938 -07 000000569 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:13:08.938 -07 000000569 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 19:13:08.938 -07 000000618 INF: FPGA: Recv EXLED1ADCR 23171
17-03-17 19:13:08.948 -07 000000569 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:08.948 -07 000000569 INF: RedLED: Using Red data: Photodiode ADC 23171 --> 7.4 mW (old method), or 205.4 mW (new method). Difference = 197.9 mW
17-03-17 19:13:08.948 -07 000000569 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 19:13:08.948 -07 000000618 INF: FPGA: Recv EXLED1OFF 
17-03-17 19:13:08.958 -07 000000569 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:08.958 -07 000000569 INF: RedLED: LED was on for 21 ms
17-03-17 19:13:08.958 -07 000000569 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 26 ms.
17-03-17 19:13:08.958 -07 000000569 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 19:13:08.958 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:13:08.958 -07 000000569 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 19:13:08.958 -07 000000618 INF: FPGA: Recv EXLED2ON 
17-03-17 19:13:08.968 -07 000000569 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:13:08.968 -07 000000569 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:13:08.968 -07 000000502 INF: FPGA: Recv EXLED1ADCR 2098
17-03-17 19:13:08.978 -07 000000569 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:08.978 -07 000000569 INF: GreenLED: Using Green data: Photodiode ADC 2098 --> 0.9 mW (old method), or 182.3 mW (new method). Difference = 181.4 mW
17-03-17 19:13:08.978 -07 000000569 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 19:13:08.978 -07 000000512 INF: FPGA: Recv EXLED2OFF 
17-03-17 19:13:08.988 -07 000000569 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:08.988 -07 000000569 INF: GreenLED: LED was on for 19 ms
17-03-17 19:13:08.988 -07 000000569 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 26 ms.
17-03-17 19:13:08.988 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:13:08.988 -07 000000541 INF: FPGA: Recv EMCUR 
17-03-17 19:13:08.998 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:13:08.998 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 19:13:09.498 -07 000000541 INF: FPGA: Recv EMOUT
17-03-17 19:13:09.498 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 19:13:09.498 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 19:13:09.498 -07 000000541 INF: FPGA: Recv EMCUR 
17-03-17 19:13:09.508 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:13:09.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:13:09.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127627681216317. ------
17-03-17 19:13:09.508 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:13:09.508 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17946 mm
17-03-17 19:13:09.508 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:13:09.508 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:13:09.508 -07 000000618 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 19:13:09.508 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:13:09.518 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:13:09.518 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:13:09.518 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 39204, sync = True, waitForSettling = False)
17-03-17 19:13:09.518 -07 000000541 INF: Z Motor: Moving to -0.179464 mm, started at -0.127628 mm, distance = -51.84 um
17-03-17 19:13:09.528 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:09.528 -07 000000608 INF: FPGA: Recv YRDPOS 154381
17-03-17 19:13:09.538 -07 000000541 INF: FPGA: Xmit ZDACW 39204\n [Z Motor]
17-03-17 19:13:09.538 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 19:13:09.538 -07 000000618 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:09.538 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:13:09.538 -07 000000618 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 19:13:09.538 -07 000000618 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:13:09.548 -07 000000541 INF: FPGA: 'ZDACW 39204' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:13:09.548 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:09.548 -07 000000512 INF: FPGA: Recv ZDACR 39204
17-03-17 19:13:09.558 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:09.558 -07 000000541 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 19:13:09.558 -07 000000618 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:13:09.718 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:13:09.718 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:13:10.118 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.990831,
17-03-17 19:13:11.238 -07 000000541 INF: FPGA: Recv YMVTO 122703 24776
17-03-17 19:13:11.238 -07 000000618 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1703 ms overall
17-03-17 19:13:11.238 -07 000000618 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:13:11.238 -07 000000618 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24750 steps, but required 24776 steps (15.485 mm). Slippage = 0.016 mm (0.00%).
17-03-17 19:13:11.238 -07 000000618 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1703 ms, distance = 15.468 mm, average velocity = 9.083 mm/sec
17-03-17 19:13:11.668 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:13:11.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:13:14.088 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:14.088 -07 000000502 INF: FPGA: Recv YRDPOS 122697
17-03-17 19:13:14.098 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:14.098 -07 000000618 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:14.118 -07 000000618 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:13:14.118 -07 000000618 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 19:13:14.118 -07 000000618 INF: Y Motor: Moved to 59.9106 after 4602 ms
17-03-17 19:13:14.118 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179464 mm (DAC = 39204)
17-03-17 19:13:14.118 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:14.118 -07 000000502 INF: FPGA: Recv ZSGSRD 37229
17-03-17 19:13:14.128 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:13:14.128 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:14.128 -07 000000541 INF: FPGA: Recv ZSGSRD 37226
17-03-17 19:13:14.138 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:14.138 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:14.138 -07 000000502 INF: FPGA: Recv ZSGSRD 37227
17-03-17 19:13:14.148 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:14.148 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:14.148 -07 000000502 INF: FPGA: Recv ZSGSRD 37230
17-03-17 19:13:14.158 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:14.158 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:14.158 -07 000000618 INF: FPGA: Recv ZSGSRD 37220
17-03-17 19:13:14.168 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:14.168 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:14.168 -07 000000541 INF: FPGA: Recv ZSGSRD 37232
17-03-17 19:13:14.178 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:14.178 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:14.178 -07 000000541 INF: FPGA: Recv ZSGSRD 37226
17-03-17 19:13:14.188 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:14.188 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:14.188 -07 000000618 INF: FPGA: Recv ZSGSRD 37225
17-03-17 19:13:14.198 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:14.198 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:14.198 -07 000000541 INF: FPGA: Recv ZSGSRD 37226
17-03-17 19:13:14.208 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:14.208 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:14.208 -07 000000541 INF: FPGA: Recv ZSGSRD 37226
17-03-17 19:13:14.218 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:14.218 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:14.218 -07 000000618 INF: FPGA: Recv ZPIEZORD 33644
17-03-17 19:13:14.228 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:14.228 -07 000000569 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.982 V. Piezo Error = -7.9 V.
17-03-17 19:13:14.228 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37227 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37226 (-178.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37220 (-178.5 uncal um), Max = 37232 (-178.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:13:14.228 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37227, posNoise = 5, negNoise = 7
17-03-17 19:13:14.228 -07 000000569 INF: Z Motor: After move to -0.179464, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:14.228 -07 000000569 INF: Z Motor: Settle wait time = 4605 ms, measure time = 104 ms (allowed 150 ms), total time = 4709 ms
17-03-17 19:13:14.228 -07 000000569 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:13:14.278 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4763 ms
17-03-17 19:13:14.278 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:13:14.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:13:14.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:13:14.278 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:13:14.278 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:13:14.278 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:13:14.278 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:13:14.288 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:13:14.288 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:13:14.308 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 19:13:14.308 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:13:14.308 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:13:14.308 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:13:14.328 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:13:14.328 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 19:13:14.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:13:14.368 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:13:14.568 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:13:14.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:13:14.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:13:14.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 19:13:14.608 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:13:14.608 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 19:13:14.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 19:13:14.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 19:13:14.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:14.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:13:14.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:13:14.808 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:13:14.808 -07 000000561 INF: Image SNR check: start
17-03-17 19:13:14.808 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:13:14.818 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:13:14.818 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:13:14.818 -07 000000561 INF: Image SNR check: pass  [peak (Max-Min)=68.74]
17-03-17 19:13:14.818 -07 000000561 INF: Autofocus start
17-03-17 19:13:14.818 -07 000000561 INF: MeasureProfile start
17-03-17 19:13:14.838 -07 000000561 INF: MeasureProfile done
17-03-17 19:13:14.838 -07 000000561 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:13:14.838 -07 000000561 INF: Autofocus finished
17-03-17 19:13:15.018 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:13:15.018 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:13:15.018 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.17947749741247. ----------
17-03-17 19:13:15.028 -07 000000610 INF: Cycle	23	Tile	1	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:13:15.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37737, sync = True, waitForSettling = True)
17-03-17 19:13:15.028 -07 000000610 INF: Z Motor: Moving to -0.172749 mm, started at -0.179477 mm, distance = 6.73 um
17-03-17 19:13:15.028 -07 000000610 INF: FPGA: Xmit ZDACW 37737\n [Z Motor]
17-03-17 19:13:15.028 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:13:15.038 -07 000000610 INF: FPGA: 'ZDACW 37737' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:13:15.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:15.038 -07 000000541 INF: FPGA: Recv ZDACR 37737
17-03-17 19:13:15.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:15.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:13:15.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:15.198 -07 000000502 INF: FPGA: Recv ZSGSRD 36179
17-03-17 19:13:15.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:15.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:15.208 -07 000000541 INF: FPGA: Recv ZSGSRD 36184
17-03-17 19:13:15.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:15.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:15.218 -07 000000012 INF: FPGA: Recv ZSGSRD 36181
17-03-17 19:13:15.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:15.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:15.228 -07 000000541 INF: FPGA: Recv ZSGSRD 36179
17-03-17 19:13:15.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:15.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:15.238 -07 000000012 INF: FPGA: Recv ZSGSRD 36181
17-03-17 19:13:15.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:15.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:15.248 -07 000000541 INF: FPGA: Recv ZSGSRD 36178
17-03-17 19:13:15.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:13:15.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:15.258 -07 000000012 INF: FPGA: Recv ZSGSRD 36182
17-03-17 19:13:15.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:15.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:15.268 -07 000000541 INF: FPGA: Recv ZSGSRD 36181
17-03-17 19:13:15.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:15.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:15.278 -07 000000561 INF: FPGA: Recv ZSGSRD 36183
17-03-17 19:13:15.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:15.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:15.288 -07 000000502 INF: FPGA: Recv ZSGSRD 36182
17-03-17 19:13:15.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:15.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:15.298 -07 000000561 INF: FPGA: Recv ZPIEZORD 32285
17-03-17 19:13:15.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:15.308 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.758 V. Piezo Error = -8.6 V.
17-03-17 19:13:15.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36181 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36181 (-171.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36178 (-171.9 uncal um), Max = 36184 (-171.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:13:15.308 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36181, posNoise = 3, negNoise = 3
17-03-17 19:13:15.308 -07 000000610 INF: Z Motor: After move to -0.172749, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:15.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:13:15.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:13:15.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:13:15.308 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:13:15.308 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:13:15.308 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:13:15.308 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:13:15.308 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:13:15.308 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:13:15.308 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:13:15.308 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:13:15.308 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:13:15.308 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:13:15.318 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:13:15.318 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:13:15.328 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:13:15.328 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:13:15.338 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 19:13:15.338 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:13:15.338 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:13:15.338 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:13:15.348 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:13:15.348 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 41 ms.
17-03-17 19:13:15.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37914 150\n [Camera]
17-03-17 19:13:15.478 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.978563,
17-03-17 19:13:15.558 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:13:15.958 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:13:15.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:13:15.958 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:15.958 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:15.958 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) start.
17-03-17 19:13:15.958 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:13:15.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:13:15.958 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:15.958 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:15.958 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1063391280, 0x0, 418435064) start.
17-03-17 19:13:16.148 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37914 784
17-03-17 19:13:16.298 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:13:16.348 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:13:16.348 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:13:16.348 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:16.358 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1063391280, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:13:16.358 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:13:16.358 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:16.358 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:13:16.358 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:13:16.368 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:13:16.368 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:13:16.488 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:13:16.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:13:16.488 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:16.488 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:16.488 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1098813544, 0x0, 391868352) start.
17-03-17 19:13:16.488 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:13:16.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:13:16.488 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:16.488 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:16.488 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1151110872, 0x0, 418435064) start.
17-03-17 19:13:16.668 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:13:16.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:13:16.678 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:13:16.678 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:13:16.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37914 150' command took 2 ms to send, 1316 ms to get response, and 1325 ms overall
17-03-17 19:13:16.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:13:16.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172757771512188. ------
17-03-17 19:13:16.688 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:13:16.688 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17912 mm
17-03-17 19:13:16.688 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:13:16.888 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1098813544, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 19:13:16.898 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:13:16.898 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:16.898 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1151110872, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 19:13:16.898 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:13:16.898 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:16.898 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:13:16.898 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 19:13:16.908 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:13:16.908 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 19:13:16.918 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:13:16.918 -07 000000012 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 19:13:16.918 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:16.918 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:13:16.918 -07 000000512 INF: FPGA: Recv YRDPOS 122697
17-03-17 19:13:16.918 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 228 ms to get response, and 235 ms overall
17-03-17 19:13:16.918 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 39129, sync = True, waitForSettling = False)
17-03-17 19:13:16.918 -07 000000512 INF: Z Motor: Moving to -0.179121 mm, started at -0.172758 mm, distance = -6.36 um
17-03-17 19:13:16.928 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:13:16.928 -07 000000012 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:16.928 -07 000000012 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:13:16.928 -07 000000012 INF: Y Motor: Moving 1331 steps2
17-03-17 19:13:16.928 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:13:16.938 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:13:16.948 -07 000000512 INF: FPGA: Xmit ZDACW 39129\n [Z Motor]
17-03-17 19:13:17.748 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:13:17.748 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:13:17.748 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:13:17.748 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 810 ms to get response, and 822 ms overall
17-03-17 19:13:17.748 -07 000000512 INF: FPGA: 'ZDACW 39129' command took 0 ms to send, 790 ms to get response, and 821 ms overall
17-03-17 19:13:17.748 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:17.748 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 800 ms to get response, and 820 ms overall
17-03-17 19:13:17.748 -07 000000541 INF: FPGA: Recv ZDACR 39129
17-03-17 19:13:17.758 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:17.758 -07 000000512 INF: Z Motor: MoveAbsStepped took 830 ms (did NOT wait for settling yet))
17-03-17 19:13:17.778 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:17.778 -07 000000608 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:13:17.788 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:17.788 -07 000000012 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:17.788 -07 000000012 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:13:17.788 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 821 ms, distance = 0.832 mm, average velocity = 1.013 mm/sec
17-03-17 19:13:18.738 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:18.738 -07 000000608 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:13:18.748 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:18.748 -07 000000012 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:18.768 -07 000000012 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:13:18.768 -07 000000012 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:13:18.768 -07 000000012 INF: Y Motor: Moved to 60.7334 after 1851 ms (table move)
17-03-17 19:13:18.768 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179121 mm (DAC = 39129)
17-03-17 19:13:18.768 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:18.768 -07 000000608 INF: FPGA: Recv ZSGSRD 37180
17-03-17 19:13:18.778 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:13:18.778 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:18.778 -07 000000012 INF: FPGA: Recv ZSGSRD 37179
17-03-17 19:13:18.788 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:18.788 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:18.788 -07 000000608 INF: FPGA: Recv ZSGSRD 37169
17-03-17 19:13:18.798 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:18.798 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:18.798 -07 000000012 INF: FPGA: Recv ZSGSRD 37171
17-03-17 19:13:18.808 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:18.808 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:18.808 -07 000000541 INF: FPGA: Recv ZSGSRD 37170
17-03-17 19:13:18.818 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:18.818 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:18.818 -07 000000012 INF: FPGA: Recv ZSGSRD 37170
17-03-17 19:13:18.828 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:18.828 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:18.828 -07 000000608 INF: FPGA: Recv ZSGSRD 37172
17-03-17 19:13:18.838 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:18.838 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:18.838 -07 000000012 INF: FPGA: Recv ZSGSRD 37172
17-03-17 19:13:18.848 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:18.848 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:18.848 -07 000000512 INF: FPGA: Recv ZSGSRD 37176
17-03-17 19:13:18.858 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:18.858 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:18.858 -07 000000541 INF: FPGA: Recv ZSGSRD 37174
17-03-17 19:13:18.868 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:18.868 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:18.868 -07 000000608 INF: FPGA: Recv ZPIEZORD 33569
17-03-17 19:13:18.878 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:18.878 -07 000000502 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.971 V. Piezo Error = -8.0 V.
17-03-17 19:13:18.878 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.1 um, Read 10 ADC samples: Avg = 37173 (-178.2 uncal um), Error = 0.9 uncal um, Median = 37172 (-178.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37169 (-178.2 uncal um), Max = 37180 (-178.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:13:18.878 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37173, posNoise = 7, negNoise = 4
17-03-17 19:13:18.878 -07 000000502 INF: Z Motor: After move to -0.179121, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:18.878 -07 000000502 INF: Z Motor: Settle wait time = 1846 ms, measure time = 105 ms (allowed 150 ms), total time = 1951 ms
17-03-17 19:13:18.878 -07 000000502 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:13:18.928 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2236 ms
17-03-17 19:13:18.928 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:13:18.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:13:18.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:13:18.928 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:13:18.928 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:13:18.928 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:13:18.928 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:13:18.928 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:13:18.928 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:13:18.938 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:13:18.938 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:13:18.948 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:13:18.948 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:13:18.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:13:18.998 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:13:19.198 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:13:19.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:13:19.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:13:19.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 19:13:19.238 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:13:19.238 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:13:19.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 19:13:19.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:13:19.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:19.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:13:19.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:13:19.338 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:13:19.338 -07 000000012 INF: Autofocus start
17-03-17 19:13:19.338 -07 000000012 INF: MeasureProfile start
17-03-17 19:13:19.338 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:13:19.348 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:13:19.348 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:13:19.348 -07 000000012 INF: MeasureProfile done
17-03-17 19:13:19.348 -07 000000012 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:13:19.348 -07 000000012 INF: Autofocus finished
17-03-17 19:13:19.548 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:13:19.548 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:13:19.548 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.179130589956815. ----------
17-03-17 19:13:19.548 -07 000000610 INF: Cycle	23	Tile	2	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:13:19.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37644, sync = True, waitForSettling = True)
17-03-17 19:13:19.558 -07 000000610 INF: Z Motor: Moving to -0.172323 mm, started at -0.179131 mm, distance = 6.81 um
17-03-17 19:13:19.558 -07 000000610 INF: FPGA: Xmit ZDACW 37644\n [Z Motor]
17-03-17 19:13:19.558 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:13:19.568 -07 000000610 INF: FPGA: 'ZDACW 37644' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:19.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:19.568 -07 000000541 INF: FPGA: Recv ZDACR 37644
17-03-17 19:13:19.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:19.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:13:19.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:19.728 -07 000000608 INF: FPGA: Recv ZSGSRD 36121
17-03-17 19:13:19.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:19.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:19.738 -07 000000512 INF: FPGA: Recv ZSGSRD 36113
17-03-17 19:13:19.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:19.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:19.748 -07 000000541 INF: FPGA: Recv ZSGSRD 36115
17-03-17 19:13:19.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:19.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:19.758 -07 000000012 INF: FPGA: Recv ZSGSRD 36117
17-03-17 19:13:19.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:19.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:19.768 -07 000000618 INF: FPGA: Recv ZSGSRD 36112
17-03-17 19:13:19.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:19.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:19.778 -07 000000541 INF: FPGA: Recv ZSGSRD 36111
17-03-17 19:13:19.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:19.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:19.788 -07 000000569 INF: FPGA: Recv ZSGSRD 36113
17-03-17 19:13:19.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:19.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:19.798 -07 000000480 INF: FPGA: Recv ZSGSRD 36112
17-03-17 19:13:19.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:19.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:19.808 -07 000000608 INF: FPGA: Recv ZSGSRD 36119
17-03-17 19:13:19.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:19.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:19.818 -07 000000012 INF: FPGA: Recv ZSGSRD 36110
17-03-17 19:13:19.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:19.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:19.828 -07 000000512 INF: FPGA: Recv ZPIEZORD 32171
17-03-17 19:13:19.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:19.838 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.744 V. Piezo Error = -8.7 V.
17-03-17 19:13:19.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36114 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36113 (-171.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36110 (-171.4 uncal um), Max = 36121 (-171.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:13:19.838 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36114, posNoise = 7, negNoise = 4
17-03-17 19:13:19.838 -07 000000610 INF: Z Motor: After move to -0.172323, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:19.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:13:19.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:13:19.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:13:19.838 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:13:19.838 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:13:19.838 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:13:19.838 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:13:19.838 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:13:19.838 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:13:19.838 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:13:19.838 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:13:19.838 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:13:19.838 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:13:19.838 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:13:19.848 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:13:19.848 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:13:19.848 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:13:19.858 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:13:19.858 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:13:19.858 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:13:19.858 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:13:19.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37821 150\n [Camera]
17-03-17 19:13:20.058 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:13:20.458 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:13:20.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:13:20.458 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:20.458 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:20.458 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 19:13:20.468 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:13:20.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:13:20.468 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:20.468 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:20.468 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:13:20.658 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37821 784
17-03-17 19:13:20.808 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:13:20.838 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.989471,
17-03-17 19:13:20.858 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 19:13:20.858 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:13:20.858 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:20.858 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:13:20.858 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:13:20.858 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:20.868 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:13:20.868 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:13:20.868 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:13:20.868 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 19:13:20.998 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:13:20.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:13:20.998 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:20.998 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:20.998 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:13:20.998 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:13:20.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:13:20.998 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:20.998 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:20.998 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 19:13:21.188 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:13:21.188 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:13:21.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37821 150' command took 2 ms to send, 1315 ms to get response, and 1326 ms overall
17-03-17 19:13:21.188 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.172885
17-03-17 19:13:21.188 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17288 mm
17-03-17 19:13:21.188 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:13:21.188 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:13:21.188 -07 000000012 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 19:13:21.198 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:21.198 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37767, sync = True, waitForSettling = False)
17-03-17 19:13:21.198 -07 000000569 INF: Z Motor: Moving to -0.172886 mm, started at -0.172327 mm, distance = -0.56 um
17-03-17 19:13:21.198 -07 000000512 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:13:21.208 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:21.208 -07 000000569 INF: FPGA: Xmit ZDACW 37767\n [Z Motor]
17-03-17 19:13:21.208 -07 000000012 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:21.208 -07 000000012 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:13:21.208 -07 000000012 INF: Y Motor: Moving 1343 steps-19
17-03-17 19:13:21.208 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:13:21.218 -07 000000569 INF: FPGA: 'ZDACW 37767' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:13:21.218 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:21.218 -07 000000541 INF: FPGA: Recv ZDACR 37767
17-03-17 19:13:21.228 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:13:21.228 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:21.228 -07 000000569 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 19:13:21.398 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 19:13:21.398 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:13:21.398 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:21.398 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:13:21.408 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:13:21.408 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:21.408 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:13:21.408 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:13:21.408 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 19:13:21.418 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:13:21.598 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:13:21.598 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:13:21.638 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:21.638 -07 000000541 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:13:21.648 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:13:21.648 -07 000000012 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:21.648 -07 000000012 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:13:21.648 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 19:13:21.668 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:13:21.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:13:22.598 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:22.598 -07 000000502 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:13:22.608 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:22.608 -07 000000012 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:22.628 -07 000000012 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:13:22.628 -07 000000012 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:13:22.628 -07 000000012 INF: Y Motor: Moved to 61.5640 after 1433 ms (table move)
17-03-17 19:13:22.628 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172886 mm (DAC = 37767)
17-03-17 19:13:22.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:22.628 -07 000000569 INF: FPGA: Recv ZSGSRD 36202
17-03-17 19:13:22.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:13:22.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:22.638 -07 000000502 INF: FPGA: Recv ZSGSRD 36188
17-03-17 19:13:22.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:22.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:22.648 -07 000000551 INF: FPGA: Recv ZSGSRD 36203
17-03-17 19:13:22.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:22.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:22.658 -07 000000502 INF: FPGA: Recv ZSGSRD 36198
17-03-17 19:13:22.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:22.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:22.668 -07 000000551 INF: FPGA: Recv ZSGSRD 36207
17-03-17 19:13:22.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:22.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:22.678 -07 000000480 INF: FPGA: Recv ZSGSRD 36192
17-03-17 19:13:22.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:22.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:22.688 -07 000000012 INF: FPGA: Recv ZSGSRD 36206
17-03-17 19:13:22.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:22.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:22.698 -07 000000480 INF: FPGA: Recv ZSGSRD 36199
17-03-17 19:13:22.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:22.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:22.708 -07 000000012 INF: FPGA: Recv ZSGSRD 36202
17-03-17 19:13:22.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:22.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:22.718 -07 000000502 INF: FPGA: Recv ZSGSRD 36197
17-03-17 19:13:22.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:22.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:22.728 -07 000000012 INF: FPGA: Recv ZPIEZORD 32339
17-03-17 19:13:22.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:22.738 -07 000000610 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.763 V. Piezo Error = -8.5 V.
17-03-17 19:13:22.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36199 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36200 (-172.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36188 (-171.9 uncal um), Max = 36207 (-172.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 19:13:22.738 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36199, posNoise = 8, negNoise = 11
17-03-17 19:13:22.738 -07 000000610 INF: Z Motor: After move to -0.172886, error = 0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:22.738 -07 000000610 INF: Z Motor: Settle wait time = 1435 ms, measure time = 105 ms (allowed 150 ms), total time = 1540 ms
17-03-17 19:13:22.738 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:13:22.788 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 19:13:22.788 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:13:22.788 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.17287340733074. ----------
17-03-17 19:13:22.788 -07 000000610 INF: Cycle	23	Tile	3	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:13:22.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37590, sync = True, waitForSettling = True)
17-03-17 19:13:22.798 -07 000000610 INF: Z Motor: Moving to -0.172076 mm, started at -0.172873 mm, distance = 0.80 um
17-03-17 19:13:22.798 -07 000000610 INF: FPGA: Xmit ZDACW 37590\n [Z Motor]
17-03-17 19:13:22.798 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:13:22.808 -07 000000610 INF: FPGA: 'ZDACW 37590' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:13:22.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:22.808 -07 000000480 INF: FPGA: Recv ZDACR 37590
17-03-17 19:13:22.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:22.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:13:22.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:22.968 -07 000000551 INF: FPGA: Recv ZSGSRD 36073
17-03-17 19:13:22.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:22.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:22.978 -07 000000502 INF: FPGA: Recv ZSGSRD 36074
17-03-17 19:13:22.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:22.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:22.988 -07 000000512 INF: FPGA: Recv ZSGSRD 36083
17-03-17 19:13:22.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:22.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:22.998 -07 000000012 INF: FPGA: Recv ZSGSRD 36075
17-03-17 19:13:23.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:23.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:23.008 -07 000000480 INF: FPGA: Recv ZSGSRD 36078
17-03-17 19:13:23.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:23.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:23.018 -07 000000512 INF: FPGA: Recv ZSGSRD 36076
17-03-17 19:13:23.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:23.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:23.028 -07 000000551 INF: FPGA: Recv ZSGSRD 36081
17-03-17 19:13:23.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:23.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:23.038 -07 000000569 INF: FPGA: Recv ZSGSRD 36077
17-03-17 19:13:23.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:23.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:23.048 -07 000000551 INF: FPGA: Recv ZSGSRD 36073
17-03-17 19:13:23.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:23.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:23.058 -07 000000569 INF: FPGA: Recv ZSGSRD 36081
17-03-17 19:13:23.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:23.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:23.068 -07 000000012 INF: FPGA: Recv ZPIEZORD 32132
17-03-17 19:13:23.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:23.078 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.736 V. Piezo Error = -8.7 V.
17-03-17 19:13:23.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36077 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36076 (-171.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36073 (-171.2 uncal um), Max = 36083 (-171.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:13:23.078 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36077, posNoise = 6, negNoise = 4
17-03-17 19:13:23.078 -07 000000610 INF: Z Motor: After move to -0.172076, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:23.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:13:23.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:13:23.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:13:23.078 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:13:23.078 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:13:23.078 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:13:23.078 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:13:23.078 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:13:23.078 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:13:23.078 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:13:23.078 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:13:23.078 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:13:23.078 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:13:23.088 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:13:23.088 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:13:23.088 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:13:23.088 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:13:23.098 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:13:23.098 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:13:23.098 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:13:23.098 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:13:23.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37767 150\n [Camera]
17-03-17 19:13:23.298 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:13:23.698 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:13:23.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:13:23.698 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:23.698 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:23.698 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 19:13:23.698 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:13:23.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:13:23.698 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:23.698 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:23.698 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 19:13:23.888 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37767 784
17-03-17 19:13:24.038 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:13:24.078 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:13:24.078 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:13:24.078 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:24.078 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:13:24.078 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:13:24.078 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:24.078 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:13:24.078 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:13:24.088 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:13:24.088 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:13:24.228 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:13:24.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:13:24.228 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:24.228 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:24.228 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 19:13:24.238 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:13:24.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:13:24.238 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:24.238 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:24.238 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 19:13:24.418 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:13:24.428 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:13:24.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37767 150' command took 2 ms to send, 1320 ms to get response, and 1325 ms overall
17-03-17 19:13:24.428 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.172309
17-03-17 19:13:24.428 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17231 mm
17-03-17 19:13:24.428 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:13:24.428 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:13:24.428 -07 000000541 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 19:13:24.428 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37641, sync = True, waitForSettling = False)
17-03-17 19:13:24.428 -07 000000618 INF: Z Motor: Moving to -0.172309 mm, started at -0.172090 mm, distance = -0.22 um
17-03-17 19:13:24.428 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:24.428 -07 000000502 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:13:24.438 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:13:24.438 -07 000000541 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:24.438 -07 000000541 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:13:24.438 -07 000000541 INF: Y Motor: Moving 1342 steps-18
17-03-17 19:13:24.438 -07 000000618 INF: FPGA: Xmit ZDACW 37641\n [Z Motor]
17-03-17 19:13:24.438 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:13:24.448 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:13:24.448 -07 000000618 INF: FPGA: 'ZDACW 37641' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:13:24.458 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:24.458 -07 000000502 INF: FPGA: Recv ZDACR 37641
17-03-17 19:13:24.468 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:13:24.468 -07 000000618 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 19:13:24.638 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 19:13:24.638 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:13:24.638 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:24.638 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 19:13:24.638 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:13:24.638 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:24.638 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:13:24.638 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 19:13:24.638 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:13:24.648 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:13:24.818 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:13:24.818 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:13:24.858 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:24.858 -07 000000569 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:13:24.868 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:13:24.868 -07 000000541 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:24.868 -07 000000541 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:13:24.868 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-17 19:13:25.818 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:25.818 -07 000000569 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:13:25.828 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:25.828 -07 000000541 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:25.848 -07 000000541 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:13:25.848 -07 000000541 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:13:25.848 -07 000000541 INF: Y Motor: Moved to 62.3955 after 1416 ms (table move)
17-03-17 19:13:25.848 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172309 mm (DAC = 37641)
17-03-17 19:13:25.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:25.848 -07 000000541 INF: FPGA: Recv ZSGSRD 36123
17-03-17 19:13:25.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:13:25.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:25.858 -07 000000626 INF: FPGA: Recv ZSGSRD 36106
17-03-17 19:13:25.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:25.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:25.868 -07 000000512 INF: FPGA: Recv ZSGSRD 36115
17-03-17 19:13:25.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:25.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:25.888 -07 000000512 INF: FPGA: Recv ZSGSRD 36114
17-03-17 19:13:25.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:13:25.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:25.898 -07 000000512 INF: FPGA: Recv ZSGSRD 36116
17-03-17 19:13:25.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:25.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:25.908 -07 000000541 INF: FPGA: Recv ZSGSRD 36107
17-03-17 19:13:25.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:25.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:25.918 -07 000000512 INF: FPGA: Recv ZSGSRD 36113
17-03-17 19:13:25.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:25.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:25.928 -07 000000512 INF: FPGA: Recv ZSGSRD 36113
17-03-17 19:13:25.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:25.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:25.938 -07 000000480 INF: FPGA: Recv ZSGSRD 36111
17-03-17 19:13:25.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:25.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:25.948 -07 000000480 INF: FPGA: Recv ZSGSRD 36116
17-03-17 19:13:25.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:25.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:25.958 -07 000000512 INF: FPGA: Recv ZPIEZORD 32197
17-03-17 19:13:25.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:25.968 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.744 V. Piezo Error = -8.7 V.
17-03-17 19:13:25.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36113 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36114 (-171.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36106 (-171.4 uncal um), Max = 36123 (-171.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:13:25.968 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36113, posNoise = 10, negNoise = 7
17-03-17 19:13:25.968 -07 000000610 INF: Z Motor: After move to -0.172309, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:25.968 -07 000000610 INF: Z Motor: Settle wait time = 1418 ms, measure time = 117 ms (allowed 150 ms), total time = 1535 ms
17-03-17 19:13:25.968 -07 000000610 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 19:13:26.008 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 19:13:26.008 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:13:26.008 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.172320925086548. ----------
17-03-17 19:13:26.008 -07 000000610 INF: Cycle	23	Tile	4	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:13:26.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37464, sync = True, waitForSettling = True)
17-03-17 19:13:26.008 -07 000000610 INF: Z Motor: Moving to -0.171499 mm, started at -0.172321 mm, distance = 0.82 um
17-03-17 19:13:26.008 -07 000000610 INF: FPGA: Xmit ZDACW 37464\n [Z Motor]
17-03-17 19:13:26.008 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:13:26.018 -07 000000610 INF: FPGA: 'ZDACW 37464' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:13:26.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:26.018 -07 000000608 INF: FPGA: Recv ZDACR 37464
17-03-17 19:13:26.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:26.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:13:26.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:26.178 -07 000000512 INF: FPGA: Recv ZSGSRD 35986
17-03-17 19:13:26.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:26.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:26.198 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.003063,
17-03-17 19:13:26.198 -07 000000551 INF: FPGA: Recv ZSGSRD 35991
17-03-17 19:13:26.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:13:26.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:26.228 -07 000000569 INF: FPGA: Recv ZSGSRD 35978
17-03-17 19:13:26.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:13:26.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:26.248 -07 000000618 INF: FPGA: Recv ZSGSRD 35986
17-03-17 19:13:26.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:13:26.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:26.258 -07 000000541 INF: FPGA: Recv ZSGSRD 35986
17-03-17 19:13:26.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:26.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:26.278 -07 000000626 INF: FPGA: Recv ZSGSRD 35982
17-03-17 19:13:26.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:13:26.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:26.288 -07 000000626 INF: FPGA: Recv ZSGSRD 35990
17-03-17 19:13:26.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:26.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:26.298 -07 000000541 INF: FPGA: Recv ZSGSRD 35990
17-03-17 19:13:26.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:26.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:26.308 -07 000000618 INF: FPGA: Recv ZSGSRD 35984
17-03-17 19:13:26.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:26.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:26.318 -07 000000502 INF: FPGA: Recv ZSGSRD 35986
17-03-17 19:13:26.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:26.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:26.328 -07 000000541 INF: FPGA: Recv ZPIEZORD 31983
17-03-17 19:13:26.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:26.338 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.717 V. Piezo Error = -8.8 V.
17-03-17 19:13:26.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35986 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35986 (-170.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35978 (-170.6 uncal um), Max = 35991 (-170.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:13:26.338 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35986, posNoise = 5, negNoise = 8
17-03-17 19:13:26.338 -07 000000610 INF: Z Motor: After move to -0.171499, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:26.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 324 ms)
17-03-17 19:13:26.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:13:26.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:13:26.338 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:13:26.338 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:13:26.338 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:13:26.338 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:13:26.338 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:13:26.338 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:13:26.338 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:13:26.338 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:13:26.338 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:13:26.338 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:13:26.348 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:13:26.348 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:13:26.348 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:13:26.348 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:13:26.358 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:13:26.358 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:13:26.358 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:13:26.358 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:13:26.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37641 150\n [Camera]
17-03-17 19:13:26.568 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:13:26.668 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:13:26.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:13:26.958 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:13:26.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:13:26.968 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:26.968 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:26.968 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 19:13:26.968 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:13:26.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:13:26.968 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:26.968 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:26.968 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 19:13:27.158 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37641 784
17-03-17 19:13:27.308 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:13:27.358 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:13:27.358 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:13:27.358 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:27.368 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:13:27.368 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:13:27.368 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:27.368 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:13:27.368 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:13:27.368 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:13:27.378 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 19:13:27.498 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:13:27.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:13:27.498 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:27.498 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:27.498 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 19:13:27.498 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:13:27.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:13:27.498 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:27.498 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:27.498 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 19:13:27.688 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:13:27.688 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:13:27.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37641 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-17 19:13:27.688 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.172147
17-03-17 19:13:27.688 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17215 mm
17-03-17 19:13:27.688 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:13:27.698 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:13:27.698 -07 000000608 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 19:13:27.698 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 37605, sync = True, waitForSettling = False)
17-03-17 19:13:27.698 -07 000000541 INF: Z Motor: Moving to -0.172145 mm, started at -0.171505 mm, distance = -0.64 um
17-03-17 19:13:27.698 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:27.698 -07 000000502 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:13:27.708 -07 000000608 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:13:27.708 -07 000000608 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:27.708 -07 000000608 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:13:27.708 -07 000000608 INF: Y Motor: Moving 1339 steps-15
17-03-17 19:13:27.708 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:13:27.718 -07 000000541 INF: FPGA: Xmit ZDACW 37605\n [Z Motor]
17-03-17 19:13:27.718 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:13:27.728 -07 000000541 INF: FPGA: 'ZDACW 37605' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:13:27.728 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:27.728 -07 000000502 INF: FPGA: Recv ZDACR 37605
17-03-17 19:13:27.738 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:27.738 -07 000000541 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 19:13:27.878 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:13:27.878 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:13:27.878 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:27.878 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:13:27.878 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:13:27.878 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:13:27.878 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:27.878 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:13:27.878 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:13:27.888 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:13:28.078 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 19:13:28.078 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 19:13:28.118 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:28.118 -07 000000569 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:13:28.128 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:13:28.128 -07 000000608 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:28.128 -07 000000608 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:13:28.128 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.837 mm, average velocity = 2.215 mm/sec
17-03-17 19:13:29.078 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:29.078 -07 000000541 INF: FPGA: Recv YRDPOS 129484
17-03-17 19:13:29.088 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:29.088 -07 000000608 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:29.108 -07 000000608 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:13:29.108 -07 000000608 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:13:29.108 -07 000000608 INF: Y Motor: Moved to 63.2246 after 1411 ms (table move)
17-03-17 19:13:29.108 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172145 mm (DAC = 37605)
17-03-17 19:13:29.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.108 -07 000000502 INF: FPGA: Recv ZSGSRD 36083
17-03-17 19:13:29.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:13:29.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.118 -07 000000608 INF: FPGA: Recv ZSGSRD 36078
17-03-17 19:13:29.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.128 -07 000000502 INF: FPGA: Recv ZSGSRD 36085
17-03-17 19:13:29.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.138 -07 000000561 INF: FPGA: Recv ZSGSRD 36081
17-03-17 19:13:29.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:13:29.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.148 -07 000000541 INF: FPGA: Recv ZSGSRD 36093
17-03-17 19:13:29.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.158 -07 000000608 INF: FPGA: Recv ZSGSRD 36094
17-03-17 19:13:29.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.168 -07 000000012 INF: FPGA: Recv ZSGSRD 36088
17-03-17 19:13:29.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.178 -07 000000502 INF: FPGA: Recv ZSGSRD 36079
17-03-17 19:13:29.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.188 -07 000000608 INF: FPGA: Recv ZSGSRD 36083
17-03-17 19:13:29.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.198 -07 000000618 INF: FPGA: Recv ZSGSRD 36093
17-03-17 19:13:29.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:29.208 -07 000000541 INF: FPGA: Recv ZPIEZORD 32119
17-03-17 19:13:29.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.218 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.738 V. Piezo Error = -8.8 V.
17-03-17 19:13:29.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36086 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36084 (-171.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36078 (-171.2 uncal um), Max = 36094 (-171.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:13:29.218 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36086, posNoise = 8, negNoise = 8
17-03-17 19:13:29.218 -07 000000610 INF: Z Motor: After move to -0.172145, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:29.218 -07 000000610 INF: Z Motor: Settle wait time = 1409 ms, measure time = 106 ms (allowed 150 ms), total time = 1515 ms
17-03-17 19:13:29.218 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:13:29.268 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1571 ms
17-03-17 19:13:29.268 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:13:29.268 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.172147471358721. ----------
17-03-17 19:13:29.268 -07 000000610 INF: Cycle	23	Tile	5	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:13:29.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37429, sync = True, waitForSettling = True)
17-03-17 19:13:29.268 -07 000000610 INF: Z Motor: Moving to -0.171339 mm, started at -0.172147 mm, distance = 0.81 um
17-03-17 19:13:29.268 -07 000000610 INF: FPGA: Xmit ZDACW 37429\n [Z Motor]
17-03-17 19:13:29.278 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:13:29.278 -07 000000610 INF: FPGA: 'ZDACW 37429' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 19:13:29.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:29.278 -07 000000569 INF: FPGA: Recv ZDACR 37429
17-03-17 19:13:29.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:13:29.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:13:29.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.438 -07 000000541 INF: FPGA: Recv ZSGSRD 35961
17-03-17 19:13:29.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.448 -07 000000502 INF: FPGA: Recv ZSGSRD 35967
17-03-17 19:13:29.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.458 -07 000000012 INF: FPGA: Recv ZSGSRD 35967
17-03-17 19:13:29.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.468 -07 000000626 INF: FPGA: Recv ZSGSRD 35964
17-03-17 19:13:29.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.478 -07 000000561 INF: FPGA: Recv ZSGSRD 35963
17-03-17 19:13:29.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.488 -07 000000618 INF: FPGA: Recv ZSGSRD 35961
17-03-17 19:13:29.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.498 -07 000000541 INF: FPGA: Recv ZSGSRD 35960
17-03-17 19:13:29.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.508 -07 000000618 INF: FPGA: Recv ZSGSRD 35959
17-03-17 19:13:29.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.518 -07 000000012 INF: FPGA: Recv ZSGSRD 35958
17-03-17 19:13:29.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:29.528 -07 000000561 INF: FPGA: Recv ZSGSRD 35968
17-03-17 19:13:29.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:29.538 -07 000000618 INF: FPGA: Recv ZPIEZORD 31975
17-03-17 19:13:29.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:29.548 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.711 V. Piezo Error = -8.8 V.
17-03-17 19:13:29.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35963 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35962 (-170.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35958 (-170.4 uncal um), Max = 35968 (-170.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:13:29.548 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35963, posNoise = 5, negNoise = 5
17-03-17 19:13:29.548 -07 000000610 INF: Z Motor: After move to -0.171339, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:29.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:13:29.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:13:29.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:13:29.548 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:13:29.548 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:13:29.548 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:13:29.548 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:13:29.548 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:13:29.548 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:13:29.548 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:13:29.548 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:13:29.548 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:13:29.548 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:13:29.548 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:13:29.548 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:13:29.558 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:13:29.558 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:13:29.568 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:13:29.568 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:13:29.568 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:13:29.568 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:13:29.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37605 150\n [Camera]
17-03-17 19:13:29.778 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 19:13:30.178 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:13:30.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:13:30.178 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:30.178 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:30.178 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-17 19:13:30.178 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:13:30.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:13:30.178 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:30.188 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:30.188 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) start.
17-03-17 19:13:30.368 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37605 784
17-03-17 19:13:30.518 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:13:30.568 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:13:30.568 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:13:30.568 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:30.568 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:13:30.568 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:13:30.568 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:30.568 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:13:30.568 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:13:30.568 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:13:30.578 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:13:30.708 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:13:30.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:13:30.708 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:30.708 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:30.708 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) start.
17-03-17 19:13:30.708 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:13:30.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:13:30.708 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:30.868 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:30.868 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:13:30.898 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:13:30.898 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:13:30.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37605 150' command took 2 ms to send, 1317 ms to get response, and 1329 ms overall
17-03-17 19:13:30.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:13:30.908 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.224609375, Z-Position -0.171357293265284. ------
17-03-17 19:13:30.908 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:13:30.908 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17776 mm
17-03-17 19:13:30.908 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:13:30.908 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:13:30.908 -07 000000608 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 19:13:30.908 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38831, sync = True, waitForSettling = False)
17-03-17 19:13:30.908 -07 000000618 INF: Z Motor: Moving to -0.177757 mm, started at -0.171357 mm, distance = -6.40 um
17-03-17 19:13:30.908 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:13:30.918 -07 000000618 INF: FPGA: Xmit ZDACW 38831\n [Z Motor]
17-03-17 19:13:30.918 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:13:30.918 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:13:30.928 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:30.928 -07 000000618 INF: FPGA: 'ZDACW 38831' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:13:30.928 -07 000000551 INF: FPGA: Recv YRDPOS 129484
17-03-17 19:13:30.938 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:13:30.938 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:13:30.938 -07 000000608 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:30.938 -07 000000608 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:13:30.938 -07 000000608 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:13:30.948 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:30.948 -07 000000551 INF: FPGA: Recv ZDACR 38831
17-03-17 19:13:30.958 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:13:30.958 -07 000000618 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 19:13:30.958 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:13:31.128 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) end. Duration was 413 ms.
17-03-17 19:13:31.128 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 19:13:31.128 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:31.128 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:13:31.128 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 417 ms.
17-03-17 19:13:31.138 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:13:31.138 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:13:31.248 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:13:31.248 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:13:31.248 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:31.248 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:13:31.258 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 543 ms.
17-03-17 19:13:31.338 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 19:13:31.338 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 19:13:31.368 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:31.378 -07 000000541 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:13:31.378 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 19:13:31.378 -07 000000608 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:31.378 -07 000000608 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 19:13:31.378 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.095 mm/sec
17-03-17 19:13:31.598 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.994908,
17-03-17 19:13:31.668 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:13:31.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:13:32.328 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:32.328 -07 000000512 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:13:32.338 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:32.338 -07 000000608 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:32.348 -07 000000608 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:13:32.348 -07 000000608 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:13:32.348 -07 000000608 INF: Y Motor: Moved to 64.0571 after 1442 ms (table move)
17-03-17 19:13:32.358 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177757 mm (DAC = 38831)
17-03-17 19:13:32.358 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:32.358 -07 000000502 INF: FPGA: Recv ZSGSRD 36967
17-03-17 19:13:32.368 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:13:32.368 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:32.368 -07 000000480 INF: FPGA: Recv ZSGSRD 36959
17-03-17 19:13:32.378 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:32.378 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:32.378 -07 000000502 INF: FPGA: Recv ZSGSRD 36950
17-03-17 19:13:32.388 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:32.388 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:32.388 -07 000000608 INF: FPGA: Recv ZSGSRD 36957
17-03-17 19:13:32.398 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:32.398 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:32.398 -07 000000512 INF: FPGA: Recv ZSGSRD 36956
17-03-17 19:13:32.408 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:32.408 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:32.408 -07 000000480 INF: FPGA: Recv ZSGSRD 36965
17-03-17 19:13:32.418 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:32.418 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:32.418 -07 000000541 INF: FPGA: Recv ZSGSRD 36965
17-03-17 19:13:32.428 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:32.428 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:32.428 -07 000000608 INF: FPGA: Recv ZSGSRD 36959
17-03-17 19:13:32.438 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:32.438 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:32.438 -07 000000541 INF: FPGA: Recv ZSGSRD 36968
17-03-17 19:13:32.448 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:32.448 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:32.448 -07 000000541 INF: FPGA: Recv ZSGSRD 36956
17-03-17 19:13:32.458 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:32.458 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:32.458 -07 000000502 INF: FPGA: Recv ZPIEZORD 33327
17-03-17 19:13:32.468 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:32.468 -07 000000561 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.925 V. Piezo Error = -8.1 V.
17-03-17 19:13:32.468 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36960 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36959 (-176.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36950 (-176.8 uncal um), Max = 36968 (-176.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:13:32.468 -07 000000561 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36960, posNoise = 8, negNoise = 10
17-03-17 19:13:32.468 -07 000000561 INF: Z Motor: After move to -0.177757, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:32.468 -07 000000561 INF: Z Motor: Settle wait time = 1445 ms, measure time = 108 ms (allowed 150 ms), total time = 1553 ms
17-03-17 19:13:32.468 -07 000000561 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:13:32.518 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 19:13:32.518 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:13:32.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:13:32.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:13:32.518 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:13:32.518 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:13:32.518 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:13:32.518 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:13:32.518 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 19:13:32.518 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:13:32.528 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:13:32.528 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:13:32.538 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:13:32.538 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:13:32.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:13:32.598 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:13:32.798 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:13:32.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:13:32.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:13:32.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 19:13:32.838 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:13:32.838 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:13:32.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 298 ms overall
17-03-17 19:13:32.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 19:13:32.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:32.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:13:32.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:13:32.938 -07 000000561 INF: Autofocus start
17-03-17 19:13:32.938 -07 000000561 INF: MeasureProfile start
17-03-17 19:13:32.938 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:13:32.938 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:13:32.948 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:13:32.948 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:13:32.948 -07 000000561 INF: MeasureProfile done
17-03-17 19:13:32.948 -07 000000561 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:13:32.948 -07 000000561 INF: Autofocus finished
17-03-17 19:13:33.148 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:13:33.148 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:13:33.148 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.17776223277062. ----------
17-03-17 19:13:33.148 -07 000000610 INF: Cycle	23	Tile	6	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:13:33.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37364, sync = True, waitForSettling = True)
17-03-17 19:13:33.158 -07 000000610 INF: Z Motor: Moving to -0.171041 mm, started at -0.177762 mm, distance = 6.72 um
17-03-17 19:13:33.158 -07 000000610 INF: FPGA: Xmit ZDACW 37364\n [Z Motor]
17-03-17 19:13:33.158 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:13:33.168 -07 000000610 INF: FPGA: 'ZDACW 37364' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:13:33.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:33.168 -07 000000512 INF: FPGA: Recv ZDACR 37364
17-03-17 19:13:33.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:33.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:13:33.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:33.328 -07 000000541 INF: FPGA: Recv ZSGSRD 35921
17-03-17 19:13:33.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:33.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:33.338 -07 000000431 INF: FPGA: Recv ZSGSRD 35913
17-03-17 19:13:33.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:33.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:33.348 -07 000000541 INF: FPGA: Recv ZSGSRD 35909
17-03-17 19:13:33.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:33.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:33.358 -07 000000551 INF: FPGA: Recv ZSGSRD 35915
17-03-17 19:13:33.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:33.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:33.368 -07 000000512 INF: FPGA: Recv ZSGSRD 35916
17-03-17 19:13:33.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:33.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:33.378 -07 000000431 INF: FPGA: Recv ZSGSRD 35919
17-03-17 19:13:33.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:33.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:33.388 -07 000000480 INF: FPGA: Recv ZSGSRD 35913
17-03-17 19:13:33.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:33.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:33.398 -07 000000608 INF: FPGA: Recv ZSGSRD 35919
17-03-17 19:13:33.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:33.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:33.408 -07 000000480 INF: FPGA: Recv ZSGSRD 35915
17-03-17 19:13:33.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:33.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:33.418 -07 000000608 INF: FPGA: Recv ZSGSRD 35913
17-03-17 19:13:33.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:33.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:33.428 -07 000000512 INF: FPGA: Recv ZPIEZORD 31915
17-03-17 19:13:33.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:33.438 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -8.8 V.
17-03-17 19:13:33.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35915 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35915 (-170.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35909 (-170.1 uncal um), Max = 35921 (-170.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:13:33.438 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35915, posNoise = 6, negNoise = 6
17-03-17 19:13:33.438 -07 000000610 INF: Z Motor: After move to -0.171041, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:33.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:13:33.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:13:33.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:13:33.438 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:13:33.438 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:13:33.438 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:13:33.438 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:13:33.438 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:13:33.438 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:13:33.438 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:13:33.438 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:13:33.438 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:13:33.438 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:13:33.448 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:13:33.448 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:13:33.448 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:13:33.448 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:13:33.458 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:13:33.458 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:13:33.458 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:13:33.458 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:13:33.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37540 150\n [Camera]
17-03-17 19:13:33.658 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:13:34.058 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:13:34.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:13:34.058 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:34.058 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:13:34.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:13:34.058 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:34.058 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:34.058 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:13:34.068 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:34.068 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:13:34.248 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37540 784
17-03-17 19:13:34.398 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:13:34.438 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:13:34.438 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:13:34.438 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:34.448 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:13:34.448 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:13:34.448 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:13:34.448 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:13:34.448 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:34.448 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:13:34.458 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:13:34.588 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:13:34.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:13:34.588 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:34.598 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:13:34.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:13:34.598 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:34.598 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:34.598 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:13:34.598 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:34.598 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:13:34.788 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-17 19:13:34.788 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:13:34.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37540 150' command took 2 ms to send, 1321 ms to get response, and 1328 ms overall
17-03-17 19:13:34.788 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.171614
17-03-17 19:13:34.788 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17161 mm
17-03-17 19:13:34.788 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:13:34.788 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37489, sync = True, waitForSettling = False)
17-03-17 19:13:34.788 -07 000000431 INF: Z Motor: Moving to -0.171614 mm, started at -0.171049 mm, distance = -0.56 um
17-03-17 19:13:34.788 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:13:34.788 -07 000000512 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 19:13:34.788 -07 000000431 INF: FPGA: Xmit ZDACW 37489\n [Z Motor]
17-03-17 19:13:34.788 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:13:34.798 -07 000000431 INF: FPGA: 'ZDACW 37489' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:13:34.798 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:34.798 -07 000000480 INF: FPGA: Recv ZDACR 37489
17-03-17 19:13:34.808 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:34.808 -07 000000431 INF: Z Motor: MoveAbsStepped took 13 ms (did NOT wait for settling yet))
17-03-17 19:13:34.808 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:34.808 -07 000000618 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:13:34.818 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:13:34.818 -07 000000512 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:34.818 -07 000000512 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:13:34.818 -07 000000512 INF: Y Motor: Moving 1337 steps-11
17-03-17 19:13:34.818 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:13:34.978 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:13:34.978 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:13:34.978 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:34.978 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:13:34.978 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:13:34.978 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:34.978 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:13:34.988 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:13:34.988 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:13:34.988 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:13:35.188 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:13:35.188 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 19:13:35.218 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:35.228 -07 000000618 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:13:35.238 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:35.238 -07 000000512 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:35.238 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:13:35.238 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.835 mm, average velocity = 2.210 mm/sec
17-03-17 19:13:36.188 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:36.188 -07 000000480 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:13:36.198 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:36.198 -07 000000512 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:36.218 -07 000000512 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:13:36.218 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:13:36.218 -07 000000512 INF: Y Motor: Moved to 64.8789 after 1424 ms (table move)
17-03-17 19:13:36.218 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171614 mm (DAC = 37489)
17-03-17 19:13:36.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.218 -07 000000618 INF: FPGA: Recv ZSGSRD 36004
17-03-17 19:13:36.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:13:36.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.228 -07 000000512 INF: FPGA: Recv ZSGSRD 36000
17-03-17 19:13:36.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.238 -07 000000618 INF: FPGA: Recv ZSGSRD 36005
17-03-17 19:13:36.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.248 -07 000000618 INF: FPGA: Recv ZSGSRD 36008
17-03-17 19:13:36.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.258 -07 000000618 INF: FPGA: Recv ZSGSRD 36008
17-03-17 19:13:36.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.268 -07 000000512 INF: FPGA: Recv ZSGSRD 36008
17-03-17 19:13:36.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.278 -07 000000618 INF: FPGA: Recv ZSGSRD 36004
17-03-17 19:13:36.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.288 -07 000000618 INF: FPGA: Recv ZSGSRD 36003
17-03-17 19:13:36.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.298 -07 000000512 INF: FPGA: Recv ZSGSRD 35996
17-03-17 19:13:36.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.308 -07 000000618 INF: FPGA: Recv ZSGSRD 36003
17-03-17 19:13:36.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:36.318 -07 000000502 INF: FPGA: Recv ZPIEZORD 32035
17-03-17 19:13:36.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.328 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -8.8 V.
17-03-17 19:13:36.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36004 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36004 (-170.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35996 (-170.7 uncal um), Max = 36008 (-170.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:13:36.328 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36004, posNoise = 4, negNoise = 8
17-03-17 19:13:36.328 -07 000000610 INF: Z Motor: After move to -0.171614, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:36.328 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 107 ms (allowed 150 ms), total time = 1534 ms
17-03-17 19:13:36.328 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:13:36.378 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 19:13:36.378 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:13:36.378 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.171620685963096. ----------
17-03-17 19:13:36.378 -07 000000610 INF: Cycle	23	Tile	7	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:13:36.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37312, sync = True, waitForSettling = True)
17-03-17 19:13:36.378 -07 000000610 INF: Z Motor: Moving to -0.170803 mm, started at -0.171621 mm, distance = 0.82 um
17-03-17 19:13:36.378 -07 000000610 INF: FPGA: Xmit ZDACW 37312\n [Z Motor]
17-03-17 19:13:36.388 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:13:36.388 -07 000000610 INF: FPGA: 'ZDACW 37312' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:13:36.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:36.388 -07 000000502 INF: FPGA: Recv ZDACR 37312
17-03-17 19:13:36.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:13:36.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.548 -07 000000608 INF: FPGA: Recv ZSGSRD 35880
17-03-17 19:13:36.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:36.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.558 -07 000000608 INF: FPGA: Recv ZSGSRD 35884
17-03-17 19:13:36.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.568 -07 000000512 INF: FPGA: Recv ZSGSRD 35881
17-03-17 19:13:36.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.578 -07 000000608 INF: FPGA: Recv ZSGSRD 35872
17-03-17 19:13:36.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.588 -07 000000512 INF: FPGA: Recv ZSGSRD 35878
17-03-17 19:13:36.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.598 -07 000000512 INF: FPGA: Recv ZSGSRD 35887
17-03-17 19:13:36.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.608 -07 000000502 INF: FPGA: Recv ZSGSRD 35876
17-03-17 19:13:36.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.618 -07 000000608 INF: FPGA: Recv ZSGSRD 35873
17-03-17 19:13:36.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.628 -07 000000480 INF: FPGA: Recv ZSGSRD 35879
17-03-17 19:13:36.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:36.648 -07 000000480 INF: FPGA: Recv ZSGSRD 35884
17-03-17 19:13:36.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:13:36.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:36.658 -07 000000480 INF: FPGA: Recv ZPIEZORD 31860
17-03-17 19:13:36.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:36.668 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.693 V. Piezo Error = -8.9 V.
17-03-17 19:13:36.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35879 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35880 (-169.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35872 (-169.9 uncal um), Max = 35887 (-170.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:13:36.668 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35879, posNoise = 8, negNoise = 7
17-03-17 19:13:36.668 -07 000000610 INF: Z Motor: After move to -0.170803, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:36.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 19:13:36.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:13:36.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:13:36.668 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:13:36.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:13:36.668 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:13:36.668 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:13:36.668 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:13:36.668 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:13:36.668 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:13:36.668 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:13:36.668 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:13:36.668 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:13:36.668 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:13:36.668 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:13:36.678 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:13:36.678 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:13:36.678 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:13:36.678 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:13:36.688 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 19:13:36.688 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:13:36.688 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 19:13:36.688 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:13:36.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37489 150\n [Camera]
17-03-17 19:13:36.888 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:13:36.958 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.018051,
17-03-17 19:13:37.288 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:13:37.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:13:37.288 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:37.298 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:13:37.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:13:37.298 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:37.298 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:37.298 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:13:37.298 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:37.298 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 19:13:37.488 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37489 786
17-03-17 19:13:37.638 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:13:37.668 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:13:37.668 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 371 ms.
17-03-17 19:13:37.668 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 19:13:37.668 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:37.668 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:13:37.668 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:37.678 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:13:37.678 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:13:37.678 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:13:37.678 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:13:37.828 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:13:37.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:13:37.828 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:37.828 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:37.828 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 19:13:37.828 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:13:37.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:13:37.828 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:37.948 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:37.948 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:13:38.018 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:13:38.018 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:13:38.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37489 150' command took 2 ms to send, 1314 ms to get response, and 1325 ms overall
17-03-17 19:13:38.018 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.171370
17-03-17 19:13:38.018 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17137 mm
17-03-17 19:13:38.018 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:13:38.018 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:13:38.018 -07 000000512 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 19:13:38.018 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:38.018 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37436, sync = True, waitForSettling = False)
17-03-17 19:13:38.018 -07 000000480 INF: Z Motor: Moving to -0.171371 mm, started at -0.170818 mm, distance = -0.55 um
17-03-17 19:13:38.028 -07 000000480 INF: FPGA: Xmit ZDACW 37436\n [Z Motor]
17-03-17 19:13:38.028 -07 000000551 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:13:38.028 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 19:13:38.028 -07 000000512 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:38.028 -07 000000512 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:13:38.028 -07 000000512 INF: Y Motor: Moving 1350 steps-28
17-03-17 19:13:38.028 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:13:38.038 -07 000000480 INF: FPGA: 'ZDACW 37436' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:38.038 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:13:38.048 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:38.048 -07 000000626 INF: FPGA: Recv ZDACR 37436
17-03-17 19:13:38.058 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:13:38.058 -07 000000480 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 19:13:38.208 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:13:38.208 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:13:38.208 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:38.208 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:13:38.208 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:13:38.318 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:13:38.318 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:13:38.318 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:38.328 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:13:38.328 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 500 ms.
17-03-17 19:13:38.408 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:13:38.408 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 19:13:38.448 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:38.448 -07 000000551 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:13:38.458 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:13:38.458 -07 000000512 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:38.458 -07 000000512 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:13:38.458 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.844 mm, average velocity = 2.191 mm/sec
17-03-17 19:13:39.408 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:39.408 -07 000000012 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:13:39.418 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.418 -07 000000512 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:39.438 -07 000000512 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:13:39.438 -07 000000512 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:13:39.438 -07 000000512 INF: Y Motor: Moved to 65.7144 after 1414 ms (table move)
17-03-17 19:13:39.438 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171371 mm (DAC = 37436)
17-03-17 19:13:39.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.438 -07 000000480 INF: FPGA: Recv ZSGSRD 35963
17-03-17 19:13:39.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:13:39.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.448 -07 000000480 INF: FPGA: Recv ZSGSRD 35963
17-03-17 19:13:39.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.458 -07 000000512 INF: FPGA: Recv ZSGSRD 35968
17-03-17 19:13:39.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.468 -07 000000480 INF: FPGA: Recv ZSGSRD 35975
17-03-17 19:13:39.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.478 -07 000000512 INF: FPGA: Recv ZSGSRD 35967
17-03-17 19:13:39.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.488 -07 000000480 INF: FPGA: Recv ZSGSRD 35967
17-03-17 19:13:39.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.498 -07 000000512 INF: FPGA: Recv ZSGSRD 35971
17-03-17 19:13:39.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.508 -07 000000512 INF: FPGA: Recv ZSGSRD 35963
17-03-17 19:13:39.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.518 -07 000000512 INF: FPGA: Recv ZSGSRD 35962
17-03-17 19:13:39.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.528 -07 000000512 INF: FPGA: Recv ZSGSRD 35967
17-03-17 19:13:39.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:39.538 -07 000000626 INF: FPGA: Recv ZPIEZORD 31961
17-03-17 19:13:39.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.548 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.712 V. Piezo Error = -8.8 V.
17-03-17 19:13:39.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35967 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35967 (-170.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35962 (-170.5 uncal um), Max = 35975 (-170.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:13:39.548 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35967, posNoise = 8, negNoise = 5
17-03-17 19:13:39.548 -07 000000610 INF: Z Motor: After move to -0.171371, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:39.548 -07 000000610 INF: Z Motor: Settle wait time = 1415 ms, measure time = 105 ms (allowed 150 ms), total time = 1520 ms
17-03-17 19:13:39.548 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:13:39.598 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1572 ms
17-03-17 19:13:39.598 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:13:39.598 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.171382990113851. ----------
17-03-17 19:13:39.598 -07 000000610 INF: Cycle	23	Tile	8	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:13:39.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37259, sync = True, waitForSettling = True)
17-03-17 19:13:39.598 -07 000000610 INF: Z Motor: Moving to -0.170561 mm, started at -0.171383 mm, distance = 0.82 um
17-03-17 19:13:39.598 -07 000000610 INF: FPGA: Xmit ZDACW 37259\n [Z Motor]
17-03-17 19:13:39.598 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:13:39.608 -07 000000610 INF: FPGA: 'ZDACW 37259' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:13:39.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:39.608 -07 000000541 INF: FPGA: Recv ZDACR 37259
17-03-17 19:13:39.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:13:39.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.768 -07 000000541 INF: FPGA: Recv ZSGSRD 35841
17-03-17 19:13:39.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:39.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.778 -07 000000541 INF: FPGA: Recv ZSGSRD 35843
17-03-17 19:13:39.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.788 -07 000000541 INF: FPGA: Recv ZSGSRD 35841
17-03-17 19:13:39.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.798 -07 000000541 INF: FPGA: Recv ZSGSRD 35843
17-03-17 19:13:39.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.808 -07 000000541 INF: FPGA: Recv ZSGSRD 35840
17-03-17 19:13:39.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.818 -07 000000541 INF: FPGA: Recv ZSGSRD 35835
17-03-17 19:13:39.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.828 -07 000000541 INF: FPGA: Recv ZSGSRD 35841
17-03-17 19:13:39.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.838 -07 000000541 INF: FPGA: Recv ZSGSRD 35842
17-03-17 19:13:39.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.848 -07 000000541 INF: FPGA: Recv ZSGSRD 35839
17-03-17 19:13:39.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:39.858 -07 000000012 INF: FPGA: Recv ZSGSRD 35842
17-03-17 19:13:39.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:39.868 -07 000000541 INF: FPGA: Recv ZPIEZORD 31784
17-03-17 19:13:39.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:39.878 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.685 V. Piezo Error = -9.0 V.
17-03-17 19:13:39.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35841 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35841 (-169.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35835 (-169.7 uncal um), Max = 35843 (-169.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:13:39.878 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35841, posNoise = 2, negNoise = 6
17-03-17 19:13:39.878 -07 000000610 INF: Z Motor: After move to -0.170561, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:39.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:13:39.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:13:39.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:13:39.878 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:13:39.878 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:13:39.878 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:13:39.878 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:13:39.878 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:13:39.878 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:13:39.878 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:13:39.878 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:13:39.878 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:13:39.878 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:13:39.888 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:13:39.888 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:13:39.888 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:13:39.888 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:13:39.898 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:13:39.898 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:13:39.898 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:13:39.898 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:13:39.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37436 150\n [Camera]
17-03-17 19:13:40.098 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:13:40.498 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:13:40.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:13:40.508 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:40.508 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:13:40.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:13:40.508 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:40.508 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:40.508 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:13:40.508 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:40.508 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 19:13:40.698 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37436 784
17-03-17 19:13:40.848 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:13:40.878 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 19:13:40.878 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 19:13:40.878 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:40.878 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 19:13:40.878 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:13:40.878 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:40.888 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:13:40.888 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:13:40.888 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:13:40.898 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:13:41.038 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:13:41.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:13:41.038 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:41.038 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:41.038 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:13:41.038 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:13:41.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:13:41.038 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:41.038 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:41.038 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:13:41.228 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:13:41.228 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:13:41.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37436 150' command took 2 ms to send, 1315 ms to get response, and 1325 ms overall
17-03-17 19:13:41.228 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.170836
17-03-17 19:13:41.228 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17084 mm
17-03-17 19:13:41.228 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:13:41.238 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:13:41.238 -07 000000561 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 19:13:41.238 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:41.238 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 37319, sync = True, waitForSettling = False)
17-03-17 19:13:41.238 -07 000000012 INF: Z Motor: Moving to -0.170835 mm, started at -0.170574 mm, distance = -0.26 um
17-03-17 19:13:41.248 -07 000000012 INF: FPGA: Xmit ZDACW 37319\n [Z Motor]
17-03-17 19:13:41.428 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:13:41.428 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:13:41.428 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:41.428 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:13:41.428 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:13:41.428 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:41.428 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:13:41.428 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:13:41.428 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:13:41.438 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:13:41.438 -07 000000569 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:13:41.438 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:13:41.438 -07 000000012 INF: FPGA: 'ZDACW 37319' command took 0 ms to send, 189 ms to get response, and 208 ms overall
17-03-17 19:13:41.448 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:41.448 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 199 ms to get response, and 209 ms overall
17-03-17 19:13:41.448 -07 000000561 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:41.448 -07 000000561 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:13:41.448 -07 000000561 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:13:41.448 -07 000000569 INF: FPGA: Recv ZDACR 37319
17-03-17 19:13:41.458 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:41.458 -07 000000012 INF: Z Motor: MoveAbsStepped took 219 ms (did NOT wait for settling yet))
17-03-17 19:13:41.458 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:13:41.668 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:13:41.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:13:41.828 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:13:41.828 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:13:41.868 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:41.868 -07 000000012 INF: FPGA: Recv YRDPOS 136272
17-03-17 19:13:41.878 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:13:41.878 -07 000000561 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:41.878 -07 000000561 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:13:41.878 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.166 mm/sec
17-03-17 19:13:42.318 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.994908,
17-03-17 19:13:42.828 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:42.828 -07 000000012 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:13:42.838 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:42.838 -07 000000561 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:42.858 -07 000000561 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:13:42.858 -07 000000561 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:13:42.858 -07 000000561 INF: Y Motor: Moved to 66.5396 after 1620 ms (table move)
17-03-17 19:13:42.858 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170835 mm (DAC = 37319)
17-03-17 19:13:42.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:42.858 -07 000000541 INF: FPGA: Recv ZSGSRD 35887
17-03-17 19:13:42.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:13:42.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:42.868 -07 000000541 INF: FPGA: Recv ZSGSRD 35880
17-03-17 19:13:42.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:42.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:42.878 -07 000000561 INF: FPGA: Recv ZSGSRD 35876
17-03-17 19:13:42.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:42.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:42.888 -07 000000541 INF: FPGA: Recv ZSGSRD 35892
17-03-17 19:13:42.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:42.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:42.898 -07 000000012 INF: FPGA: Recv ZSGSRD 35884
17-03-17 19:13:42.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:42.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:42.908 -07 000000626 INF: FPGA: Recv ZSGSRD 35887
17-03-17 19:13:42.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:42.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:42.918 -07 000000561 INF: FPGA: Recv ZSGSRD 35885
17-03-17 19:13:42.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:42.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:42.928 -07 000000618 INF: FPGA: Recv ZSGSRD 35876
17-03-17 19:13:42.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:42.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:42.938 -07 000000012 INF: FPGA: Recv ZSGSRD 35884
17-03-17 19:13:42.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:42.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:42.948 -07 000000569 INF: FPGA: Recv ZSGSRD 35882
17-03-17 19:13:42.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:42.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:42.958 -07 000000012 INF: FPGA: Recv ZPIEZORD 31900
17-03-17 19:13:42.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:42.968 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.695 V. Piezo Error = -8.8 V.
17-03-17 19:13:42.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35883 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35884 (-170.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35876 (-169.9 uncal um), Max = 35892 (-170.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:13:42.968 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35883, posNoise = 9, negNoise = 7
17-03-17 19:13:42.968 -07 000000610 INF: Z Motor: After move to -0.170835, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:42.968 -07 000000610 INF: Z Motor: Settle wait time = 1622 ms, measure time = 107 ms (allowed 150 ms), total time = 1729 ms
17-03-17 19:13:42.968 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:13:43.018 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1781 ms
17-03-17 19:13:43.018 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:13:43.018 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.170843356293943. ----------
17-03-17 19:13:43.018 -07 000000610 INF: Cycle	23	Tile	9	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:13:43.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37142, sync = True, waitForSettling = True)
17-03-17 19:13:43.018 -07 000000610 INF: Z Motor: Moving to -0.170025 mm, started at -0.170843 mm, distance = 0.82 um
17-03-17 19:13:43.018 -07 000000610 INF: FPGA: Xmit ZDACW 37142\n [Z Motor]
17-03-17 19:13:43.018 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:13:43.028 -07 000000610 INF: FPGA: 'ZDACW 37142' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:13:43.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:43.028 -07 000000561 INF: FPGA: Recv ZDACR 37142
17-03-17 19:13:43.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:43.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:13:43.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:43.188 -07 000000012 INF: FPGA: Recv ZSGSRD 35764
17-03-17 19:13:43.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:43.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:43.198 -07 000000626 INF: FPGA: Recv ZSGSRD 35761
17-03-17 19:13:43.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:43.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:43.208 -07 000000618 INF: FPGA: Recv ZSGSRD 35756
17-03-17 19:13:43.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:43.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:43.218 -07 000000618 INF: FPGA: Recv ZSGSRD 35766
17-03-17 19:13:43.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:43.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:43.228 -07 000000626 INF: FPGA: Recv ZSGSRD 35759
17-03-17 19:13:43.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:43.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:43.238 -07 000000012 INF: FPGA: Recv ZSGSRD 35756
17-03-17 19:13:43.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:43.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:43.248 -07 000000431 INF: FPGA: Recv ZSGSRD 35757
17-03-17 19:13:43.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:43.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:43.258 -07 000000012 INF: FPGA: Recv ZSGSRD 35762
17-03-17 19:13:43.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:13:43.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:43.268 -07 000000431 INF: FPGA: Recv ZSGSRD 35765
17-03-17 19:13:43.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:43.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:43.278 -07 000000012 INF: FPGA: Recv ZSGSRD 35751
17-03-17 19:13:43.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:43.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:43.288 -07 000000431 INF: FPGA: Recv ZPIEZORD 31722
17-03-17 19:13:43.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:43.298 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.668 V. Piezo Error = -8.9 V.
17-03-17 19:13:43.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35760 (-169.2 uncal um), Error = 0.8 uncal um, Median = 35760 (-169.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35751 (-169.1 uncal um), Max = 35766 (-169.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:13:43.298 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35760, posNoise = 6, negNoise = 9
17-03-17 19:13:43.298 -07 000000610 INF: Z Motor: After move to -0.170025, error = -0.000028, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:43.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:13:43.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:13:43.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:13:43.298 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:13:43.298 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:13:43.298 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:13:43.298 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:13:43.298 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:13:43.298 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:13:43.298 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:13:43.298 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:13:43.298 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:13:43.298 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:13:43.298 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:13:43.298 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:13:43.308 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:13:43.308 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:13:43.318 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:13:43.318 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:13:43.318 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:13:43.318 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:13:43.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37319 150\n [Camera]
17-03-17 19:13:43.528 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:13:43.928 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:13:43.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:13:43.928 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:43.938 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:43.938 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:13:43.938 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:13:43.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:13:43.938 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:43.938 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:43.938 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1063391280, 0x0, 418435064) start.
17-03-17 19:13:44.128 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37319 784
17-03-17 19:13:44.278 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:13:44.318 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:13:44.318 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:13:44.318 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:44.318 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:13:44.318 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:13:44.318 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1063391280, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 19:13:44.318 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:13:44.318 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:44.328 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:13:44.338 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:13:44.468 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:13:44.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:13:44.468 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:44.468 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:44.468 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1098813544, 0x0, 391868352) start.
17-03-17 19:13:44.468 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:13:44.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:13:44.468 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:44.468 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:44.468 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1134235808, 0x0, 418435064) start.
17-03-17 19:13:44.658 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:13:44.658 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:13:44.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37319 150' command took 2 ms to send, 1316 ms to get response, and 1339 ms overall
17-03-17 19:13:44.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:13:44.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.170053178200507. ------
17-03-17 19:13:44.668 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:13:44.858 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1134235808, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:13:44.858 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:13:44.858 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:44.858 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1098813544, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:13:44.858 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:13:44.858 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:44.858 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:13:44.858 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:13:44.868 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:13:44.868 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:13:44.878 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17683 mm
17-03-17 19:13:44.878 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:13:44.878 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:13:44.878 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 208 ms to get response, and 214 ms overall
17-03-17 19:13:44.878 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:13:44.878 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:13:44.878 -07 000000569 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 19:13:44.888 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:45.748 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38629, sync = True, waitForSettling = False)
17-03-17 19:13:45.748 -07 000000502 INF: Z Motor: Moving to -0.176832 mm, started at -0.170053 mm, distance = -6.78 um
17-03-17 19:13:45.748 -07 000000502 INF: FPGA: Xmit ZDACW 38629\n [Z Motor]
17-03-17 19:13:46.248 -07 000000551 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:13:46.248 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:13:46.248 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:13:46.248 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1360 ms to get response, and 1362 ms overall
17-03-17 19:13:46.248 -07 000000502 INF: FPGA: 'ZDACW 38629' command took 0 ms to send, 490 ms to get response, and 497 ms overall
17-03-17 19:13:46.248 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:46.248 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1350 ms to get response, and 1361 ms overall
17-03-17 19:13:46.248 -07 000000569 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:46.248 -07 000000569 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:13:46.248 -07 000000569 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:13:46.248 -07 000000541 INF: FPGA: Recv ZDACR 38629
17-03-17 19:13:46.258 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:13:46.258 -07 000000502 INF: Z Motor: MoveAbsStepped took 506 ms (did NOT wait for settling yet))
17-03-17 19:13:46.258 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:13:46.628 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:13:46.628 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 19:13:46.668 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:13:46.668 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:46.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:13:46.668 -07 000000502 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:13:46.678 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:13:46.678 -07 000000569 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:46.678 -07 000000569 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 19:13:46.678 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.843 mm, average velocity = 2.184 mm/sec
17-03-17 19:13:47.628 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:47.628 -07 000000541 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:13:47.638 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:47.638 -07 000000569 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:47.658 -07 000000569 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:13:47.658 -07 000000569 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:13:47.658 -07 000000569 INF: Y Motor: Moved to 67.3721 after 2772 ms (table move)
17-03-17 19:13:47.658 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176832 mm (DAC = 38629)
17-03-17 19:13:47.658 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:47.668 -07 000000541 INF: FPGA: Recv ZSGSRD 36818
17-03-17 19:13:47.668 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:13:47.678 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:47.678 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.98264,
17-03-17 19:13:47.678 -07 000000551 INF: FPGA: Recv ZSGSRD 36819
17-03-17 19:13:47.688 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:13:47.708 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:47.708 -07 000000502 INF: FPGA: Recv ZSGSRD 36816
17-03-17 19:13:47.718 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:13:47.728 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:47.728 -07 000000541 INF: FPGA: Recv ZSGSRD 36809
17-03-17 19:13:47.738 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:13:47.738 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:47.738 -07 000000551 INF: FPGA: Recv ZSGSRD 36809
17-03-17 19:13:47.748 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:47.758 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:47.758 -07 000000541 INF: FPGA: Recv ZSGSRD 36824
17-03-17 19:13:47.768 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:13:47.768 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:47.768 -07 000000541 INF: FPGA: Recv ZSGSRD 36819
17-03-17 19:13:47.778 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:47.778 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:47.778 -07 000000502 INF: FPGA: Recv ZSGSRD 36820
17-03-17 19:13:47.788 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:47.788 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:47.788 -07 000000541 INF: FPGA: Recv ZSGSRD 36816
17-03-17 19:13:47.798 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:47.798 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:47.798 -07 000000551 INF: FPGA: Recv ZSGSRD 36817
17-03-17 19:13:47.808 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:47.808 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:47.808 -07 000000551 INF: FPGA: Recv ZPIEZORD 33172
17-03-17 19:13:47.818 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:47.818 -07 000000512 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.894 V. Piezo Error = -8.1 V.
17-03-17 19:13:47.818 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36817 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36818 (-176.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36809 (-175.9 uncal um), Max = 36824 (-176.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:13:47.818 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36817, posNoise = 7, negNoise = 8
17-03-17 19:13:47.818 -07 000000512 INF: Z Motor: After move to -0.176832, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:47.818 -07 000000512 INF: Z Motor: Settle wait time = 1914 ms, measure time = 153 ms (allowed 150 ms), total time = 2067 ms
17-03-17 19:13:47.818 -07 000000512 INF: Z Motor: Warning: Actual position measuring time = 153 ms, longer than max expected time of 150 ms
17-03-17 19:13:47.818 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2938 ms
17-03-17 19:13:47.818 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:13:47.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:13:47.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:13:47.818 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:13:47.828 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:13:47.828 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:13:47.828 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:13:47.828 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:13:47.828 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:13:47.828 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:13:47.828 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:13:47.838 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:13:47.838 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:13:47.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:13:47.878 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:13:48.078 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:13:48.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:13:48.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:13:48.198 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:13:48.198 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 19:13:48.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 358 ms to get response, and 364 ms overall
17-03-17 19:13:48.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 19:13:48.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 19:13:48.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:48.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:13:48.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 242 ms.
17-03-17 19:13:48.398 -07 000000541 INF: Autofocus start
17-03-17 19:13:48.398 -07 000000541 INF: MeasureProfile start
17-03-17 19:13:48.398 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:13:48.408 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:13:48.418 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:48.418 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:13:48.418 -07 000000541 INF: MeasureProfile done
17-03-17 19:13:48.418 -07 000000541 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 19:13:48.418 -07 000000541 INF: Autofocus finished
17-03-17 19:13:48.618 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:13:48.618 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:13:48.618 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.176843570434348. ----------
17-03-17 19:13:48.618 -07 000000610 INF: Cycle	23	Tile	10	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:13:48.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37109, sync = True, waitForSettling = True)
17-03-17 19:13:48.628 -07 000000610 INF: Z Motor: Moving to -0.169874 mm, started at -0.176844 mm, distance = 6.97 um
17-03-17 19:13:48.628 -07 000000610 INF: FPGA: Xmit ZDACW 37109\n [Z Motor]
17-03-17 19:13:48.628 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:13:48.638 -07 000000610 INF: FPGA: 'ZDACW 37109' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:13:48.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:48.638 -07 000000512 INF: FPGA: Recv ZDACR 37109
17-03-17 19:13:48.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:48.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:13:48.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:48.798 -07 000000512 INF: FPGA: Recv ZSGSRD 35733
17-03-17 19:13:48.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:48.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:48.808 -07 000000502 INF: FPGA: Recv ZSGSRD 35731
17-03-17 19:13:48.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:48.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:48.818 -07 000000551 INF: FPGA: Recv ZSGSRD 35733
17-03-17 19:13:48.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:48.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:48.828 -07 000000480 INF: FPGA: Recv ZSGSRD 35728
17-03-17 19:13:48.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:48.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:48.838 -07 000000569 INF: FPGA: Recv ZSGSRD 35734
17-03-17 19:13:48.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:48.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:48.848 -07 000000502 INF: FPGA: Recv ZSGSRD 35734
17-03-17 19:13:48.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:48.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:48.858 -07 000000551 INF: FPGA: Recv ZSGSRD 35732
17-03-17 19:13:48.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:48.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:48.868 -07 000000618 INF: FPGA: Recv ZSGSRD 35736
17-03-17 19:13:48.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:48.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:48.878 -07 000000569 INF: FPGA: Recv ZSGSRD 35734
17-03-17 19:13:48.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:48.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:48.888 -07 000000502 INF: FPGA: Recv ZSGSRD 35738
17-03-17 19:13:48.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:13:48.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:48.898 -07 000000618 INF: FPGA: Recv ZPIEZORD 31684
17-03-17 19:13:48.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:48.908 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.662 V. Piezo Error = -8.9 V.
17-03-17 19:13:48.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35733 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35734 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35728 (-169.0 uncal um), Max = 35738 (-169.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:13:48.908 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35733, posNoise = 5, negNoise = 5
17-03-17 19:13:48.908 -07 000000610 INF: Z Motor: After move to -0.169874, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:48.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:13:48.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:13:48.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:13:48.908 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:13:48.908 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:13:48.908 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:13:48.908 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:13:48.908 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:13:48.908 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:13:48.908 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:13:48.908 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:13:48.908 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:13:48.908 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:13:48.908 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:13:48.908 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:13:48.908 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:13:48.918 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:13:48.928 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:13:48.928 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:13:48.928 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:13:48.928 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:13:48.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37285 150\n [Camera]
17-03-17 19:13:49.128 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:13:49.528 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:13:49.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:13:49.528 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:49.538 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:13:49.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:13:49.538 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:49.538 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:49.538 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:13:49.538 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:49.538 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 19:13:49.728 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37285 784
17-03-17 19:13:49.868 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:13:49.938 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:13:49.938 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:13:49.938 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:49.938 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:13:49.938 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:13:49.938 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:49.938 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:13:49.938 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:13:49.938 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:13:49.948 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:13:50.068 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:13:50.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:13:50.068 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:50.068 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:50.068 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:13:50.068 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:13:50.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:13:50.068 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:50.188 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:50.188 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:13:50.258 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:13:50.258 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:13:50.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37285 150' command took 3 ms to send, 1314 ms to get response, and 1327 ms overall
17-03-17 19:13:50.258 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169678
17-03-17 19:13:50.258 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16968 mm
17-03-17 19:13:50.258 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:13:50.258 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:13:50.258 -07 000000608 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 19:13:50.268 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:50.268 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37066, sync = True, waitForSettling = False)
17-03-17 19:13:50.268 -07 000000512 INF: Z Motor: Moving to -0.169677 mm, started at -0.169880 mm, distance = 0.20 um
17-03-17 19:13:50.268 -07 000000618 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:13:50.278 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:50.278 -07 000000608 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:50.278 -07 000000512 INF: FPGA: Xmit ZDACW 37066\n [Z Motor]
17-03-17 19:13:50.278 -07 000000608 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:13:50.278 -07 000000608 INF: Y Motor: Moving 1344 steps-22
17-03-17 19:13:50.278 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:13:50.288 -07 000000512 INF: FPGA: 'ZDACW 37066' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:13:50.288 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:13:50.298 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:50.298 -07 000000618 INF: FPGA: Recv ZDACR 37066
17-03-17 19:13:50.308 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:13:50.308 -07 000000512 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 19:13:50.448 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:13:50.448 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:13:50.448 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:50.448 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:13:50.448 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:13:50.558 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:13:50.558 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:13:50.558 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:50.558 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:13:50.568 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-17 19:13:50.658 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 19:13:50.658 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 385 ms overall
17-03-17 19:13:50.698 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:50.698 -07 000000541 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:13:50.708 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:13:50.708 -07 000000608 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:50.708 -07 000000608 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:13:50.708 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.841 mm, average velocity = 2.178 mm/sec
17-03-17 19:13:51.658 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:51.658 -07 000000541 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:13:51.668 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:51.668 -07 000000608 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:51.668 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:13:51.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:13:51.688 -07 000000608 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:13:51.688 -07 000000608 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:13:51.688 -07 000000608 INF: Y Motor: Moved to 68.2051 after 1421 ms (table move)
17-03-17 19:13:51.688 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169677 mm (DAC = 37066)
17-03-17 19:13:51.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:51.688 -07 000000618 INF: FPGA: Recv ZSGSRD 35704
17-03-17 19:13:51.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:13:51.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:51.698 -07 000000541 INF: FPGA: Recv ZSGSRD 35704
17-03-17 19:13:51.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:51.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:51.708 -07 000000512 INF: FPGA: Recv ZSGSRD 35708
17-03-17 19:13:51.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:51.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:51.718 -07 000000618 INF: FPGA: Recv ZSGSRD 35706
17-03-17 19:13:51.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:51.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:51.728 -07 000000608 INF: FPGA: Recv ZSGSRD 35699
17-03-17 19:13:51.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:51.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:51.738 -07 000000502 INF: FPGA: Recv ZSGSRD 35701
17-03-17 19:13:51.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:51.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:51.748 -07 000000512 INF: FPGA: Recv ZSGSRD 35699
17-03-17 19:13:51.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:51.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:51.758 -07 000000512 INF: FPGA: Recv ZSGSRD 35702
17-03-17 19:13:51.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:51.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:51.768 -07 000000512 INF: FPGA: Recv ZSGSRD 35706
17-03-17 19:13:51.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:51.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:51.778 -07 000000608 INF: FPGA: Recv ZSGSRD 35706
17-03-17 19:13:51.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:51.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:51.788 -07 000000618 INF: FPGA: Recv ZPIEZORD 31653
17-03-17 19:13:51.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:51.798 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.656 V. Piezo Error = -8.9 V.
17-03-17 19:13:51.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35704 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35704 (-168.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35699 (-168.8 uncal um), Max = 35708 (-168.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:13:51.798 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35704, posNoise = 4, negNoise = 5
17-03-17 19:13:51.798 -07 000000610 INF: Z Motor: After move to -0.169677, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:51.798 -07 000000610 INF: Z Motor: Settle wait time = 1423 ms, measure time = 106 ms (allowed 150 ms), total time = 1529 ms
17-03-17 19:13:51.798 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:13:51.848 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 19:13:51.848 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:13:51.848 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.169693422320568. ----------
17-03-17 19:13:51.848 -07 000000610 INF: Cycle	23	Tile	11	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:13:51.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36889, sync = True, waitForSettling = True)
17-03-17 19:13:51.848 -07 000000610 INF: Z Motor: Moving to -0.168867 mm, started at -0.169693 mm, distance = 0.83 um
17-03-17 19:13:51.848 -07 000000610 INF: FPGA: Xmit ZDACW 36889\n [Z Motor]
17-03-17 19:13:51.848 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:13:51.858 -07 000000610 INF: FPGA: 'ZDACW 36889' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:13:51.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:51.858 -07 000000618 INF: FPGA: Recv ZDACR 36889
17-03-17 19:13:51.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:51.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:13:52.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:52.018 -07 000000502 INF: FPGA: Recv ZSGSRD 35573
17-03-17 19:13:52.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:52.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:52.028 -07 000000608 INF: FPGA: Recv ZSGSRD 35576
17-03-17 19:13:52.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:52.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:52.038 -07 000000608 INF: FPGA: Recv ZSGSRD 35577
17-03-17 19:13:52.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:52.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:52.048 -07 000000541 INF: FPGA: Recv ZSGSRD 35571
17-03-17 19:13:52.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:52.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:52.058 -07 000000608 INF: FPGA: Recv ZSGSRD 35574
17-03-17 19:13:52.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:52.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:52.068 -07 000000608 INF: FPGA: Recv ZSGSRD 35576
17-03-17 19:13:52.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:52.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:52.078 -07 000000618 INF: FPGA: Recv ZSGSRD 35576
17-03-17 19:13:52.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:52.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:52.088 -07 000000618 INF: FPGA: Recv ZSGSRD 35570
17-03-17 19:13:52.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:52.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:52.098 -07 000000512 INF: FPGA: Recv ZSGSRD 35575
17-03-17 19:13:52.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:52.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:52.108 -07 000000541 INF: FPGA: Recv ZSGSRD 35577
17-03-17 19:13:52.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:52.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:52.118 -07 000000512 INF: FPGA: Recv ZPIEZORD 31476
17-03-17 19:13:52.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:52.128 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.629 V. Piezo Error = -9.0 V.
17-03-17 19:13:52.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35574 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35576 (-168.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35570 (-168.0 uncal um), Max = 35577 (-168.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:13:52.128 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35574, posNoise = 3, negNoise = 4
17-03-17 19:13:52.128 -07 000000610 INF: Z Motor: After move to -0.168867, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:52.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:13:52.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:13:52.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:13:52.128 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:13:52.128 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:13:52.128 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:13:52.128 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:13:52.128 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:13:52.128 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:13:52.128 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:13:52.128 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:13:52.128 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:13:52.128 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:13:52.138 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:13:52.138 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:13:52.138 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:13:52.138 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:13:52.148 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:13:52.148 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:13:52.148 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:13:52.148 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:13:52.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37066 150\n [Camera]
17-03-17 19:13:52.348 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:13:52.748 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:13:52.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:13:52.748 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:52.758 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:13:52.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:13:52.758 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:52.758 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:52.758 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:52.758 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:13:52.758 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-17 19:13:52.948 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37066 784
17-03-17 19:13:53.078 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.014009,
17-03-17 19:13:53.088 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:13:53.148 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:13:53.148 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:13:53.148 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:53.158 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:13:53.158 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:13:53.158 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:53.158 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:13:53.158 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:13:53.158 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:13:53.168 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 19:13:53.288 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:13:53.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:13:53.288 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:53.288 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:53.288 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 19:13:53.288 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:13:53.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:13:53.288 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:53.288 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:53.288 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 19:13:53.478 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:13:53.478 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:13:53.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37066 150' command took 2 ms to send, 1314 ms to get response, and 1325 ms overall
17-03-17 19:13:53.478 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.169539
17-03-17 19:13:53.478 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16954 mm
17-03-17 19:13:53.478 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:13:53.478 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:13:53.478 -07 000000608 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 19:13:53.478 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:53.478 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37036, sync = True, waitForSettling = False)
17-03-17 19:13:53.478 -07 000000512 INF: Z Motor: Moving to -0.169540 mm, started at -0.168858 mm, distance = -0.68 um
17-03-17 19:13:53.488 -07 000000512 INF: FPGA: Xmit ZDACW 37036\n [Z Motor]
17-03-17 19:13:53.488 -07 000000431 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:13:53.488 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 19:13:53.488 -07 000000608 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:53.488 -07 000000608 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:13:53.488 -07 000000608 INF: Y Motor: Moving 1340 steps-15
17-03-17 19:13:53.488 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:13:53.498 -07 000000512 INF: FPGA: 'ZDACW 37036' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:53.498 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:53.498 -07 000000502 INF: FPGA: Recv ZDACR 37036
17-03-17 19:13:53.508 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:53.508 -07 000000512 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 19:13:53.508 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:13:53.688 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 19:13:53.688 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:13:53.698 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:53.698 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:13:53.698 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 19:13:53.698 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:53.708 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:13:53.708 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 19:13:53.708 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:13:53.708 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 19:13:53.878 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 19:13:53.878 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:13:53.918 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:53.918 -07 000000561 INF: FPGA: Recv YRDPOS 141367
17-03-17 19:13:53.928 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:13:53.928 -07 000000608 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:53.928 -07 000000608 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 19:13:53.928 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.131 mm/sec
17-03-17 19:13:54.878 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:54.878 -07 000000012 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:13:54.888 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:54.888 -07 000000608 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:54.908 -07 000000608 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:13:54.908 -07 000000608 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:13:54.908 -07 000000608 INF: Y Motor: Moved to 69.0273 after 1422 ms (table move)
17-03-17 19:13:54.908 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169540 mm (DAC = 37036)
17-03-17 19:13:54.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:54.908 -07 000000512 INF: FPGA: Recv ZSGSRD 35684
17-03-17 19:13:54.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:13:54.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:54.918 -07 000000541 INF: FPGA: Recv ZSGSRD 35675
17-03-17 19:13:54.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:54.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:54.928 -07 000000012 INF: FPGA: Recv ZSGSRD 35678
17-03-17 19:13:54.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:54.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:54.938 -07 000000608 INF: FPGA: Recv ZSGSRD 35685
17-03-17 19:13:54.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:54.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:54.948 -07 000000541 INF: FPGA: Recv ZSGSRD 35681
17-03-17 19:13:54.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:54.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:54.958 -07 000000608 INF: FPGA: Recv ZSGSRD 35684
17-03-17 19:13:54.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:54.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:54.968 -07 000000012 INF: FPGA: Recv ZSGSRD 35682
17-03-17 19:13:54.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:54.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:54.978 -07 000000512 INF: FPGA: Recv ZSGSRD 35678
17-03-17 19:13:54.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:54.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:54.988 -07 000000608 INF: FPGA: Recv ZSGSRD 35678
17-03-17 19:13:54.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:54.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:54.998 -07 000000012 INF: FPGA: Recv ZSGSRD 35680
17-03-17 19:13:55.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:55.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:55.008 -07 000000541 INF: FPGA: Recv ZPIEZORD 31650
17-03-17 19:13:55.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:55.018 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -8.9 V.
17-03-17 19:13:55.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35680 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35680 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35675 (-168.6 uncal um), Max = 35685 (-168.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:13:55.018 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35680, posNoise = 5, negNoise = 5
17-03-17 19:13:55.018 -07 000000610 INF: Z Motor: After move to -0.169540, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:55.018 -07 000000610 INF: Z Motor: Settle wait time = 1424 ms, measure time = 107 ms (allowed 150 ms), total time = 1531 ms
17-03-17 19:13:55.018 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:13:55.068 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 19:13:55.068 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:13:55.068 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.169539241229166. ----------
17-03-17 19:13:55.068 -07 000000610 INF: Cycle	23	Tile	12	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:13:55.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36859, sync = True, waitForSettling = True)
17-03-17 19:13:55.068 -07 000000610 INF: Z Motor: Moving to -0.168730 mm, started at -0.169539 mm, distance = 0.81 um
17-03-17 19:13:55.068 -07 000000610 INF: FPGA: Xmit ZDACW 36859\n [Z Motor]
17-03-17 19:13:55.068 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:13:55.078 -07 000000610 INF: FPGA: 'ZDACW 36859' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:13:55.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:55.078 -07 000000012 INF: FPGA: Recv ZDACR 36859
17-03-17 19:13:55.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:55.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:13:55.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:55.238 -07 000000608 INF: FPGA: Recv ZSGSRD 35556
17-03-17 19:13:55.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:55.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:55.248 -07 000000012 INF: FPGA: Recv ZSGSRD 35559
17-03-17 19:13:55.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:55.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:55.258 -07 000000608 INF: FPGA: Recv ZSGSRD 35557
17-03-17 19:13:55.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:55.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:55.268 -07 000000012 INF: FPGA: Recv ZSGSRD 35557
17-03-17 19:13:55.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:55.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:55.278 -07 000000608 INF: FPGA: Recv ZSGSRD 35551
17-03-17 19:13:55.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:55.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:55.288 -07 000000541 INF: FPGA: Recv ZSGSRD 35545
17-03-17 19:13:55.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:55.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:55.298 -07 000000608 INF: FPGA: Recv ZSGSRD 35554
17-03-17 19:13:55.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:55.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:55.308 -07 000000012 INF: FPGA: Recv ZSGSRD 35558
17-03-17 19:13:55.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:55.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:55.318 -07 000000541 INF: FPGA: Recv ZSGSRD 35551
17-03-17 19:13:55.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:55.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:55.328 -07 000000512 INF: FPGA: Recv ZSGSRD 35561
17-03-17 19:13:55.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:55.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:55.338 -07 000000608 INF: FPGA: Recv ZPIEZORD 31516
17-03-17 19:13:55.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:55.348 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.624 V. Piezo Error = -8.9 V.
17-03-17 19:13:55.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35555 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35556 (-167.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35545 (-167.8 uncal um), Max = 35561 (-167.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:13:55.348 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35555, posNoise = 6, negNoise = 10
17-03-17 19:13:55.348 -07 000000610 INF: Z Motor: After move to -0.168730, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:55.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:13:55.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:13:55.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:13:55.348 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:13:55.348 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:13:55.348 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:13:55.348 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:13:55.348 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:13:55.348 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:13:55.348 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:13:55.348 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:13:55.348 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:13:55.348 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:13:55.358 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:13:55.358 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:13:55.358 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:13:55.358 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:13:55.368 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:13:55.368 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:13:55.368 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:13:55.368 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:13:55.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37036 150\n [Camera]
17-03-17 19:13:55.578 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:13:55.978 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:13:55.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:13:55.978 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:55.978 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:55.978 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1063391280, 0x0, 391868352) start.
17-03-17 19:13:55.978 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:13:55.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:13:55.988 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:55.988 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:55.988 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1098813544, 0x0, 418435064) start.
17-03-17 19:13:56.168 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37036 784
17-03-17 19:13:56.318 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:13:56.358 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1063391280, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:13:56.358 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:13:56.358 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:56.358 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1098813544, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:13:56.358 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:13:56.358 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:13:56.358 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:13:56.358 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:56.358 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:13:56.368 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:13:56.508 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:13:56.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:13:56.508 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:56.508 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:56.508 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1134235808, 0x0, 391868352) start.
17-03-17 19:13:56.518 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:13:56.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:13:56.518 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:56.518 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:56.518 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:13:56.668 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:13:56.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:13:56.698 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:13:56.698 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:13:56.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37036 150' command took 2 ms to send, 1319 ms to get response, and 1329 ms overall
17-03-17 19:13:56.708 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.169052
17-03-17 19:13:56.708 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16905 mm
17-03-17 19:13:56.708 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:13:56.708 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:13:56.708 -07 000000561 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 19:13:56.708 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:56.708 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 36929, sync = True, waitForSettling = False)
17-03-17 19:13:56.708 -07 000000541 INF: Z Motor: Moving to -0.169050 mm, started at -0.168736 mm, distance = -0.31 um
17-03-17 19:13:56.708 -07 000000608 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:13:56.718 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:13:56.718 -07 000000561 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:56.718 -07 000000541 INF: FPGA: Xmit ZDACW 36929\n [Z Motor]
17-03-17 19:13:56.718 -07 000000561 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:13:56.718 -07 000000561 INF: Y Motor: Moving 1352 steps-32
17-03-17 19:13:56.718 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:13:56.728 -07 000000541 INF: FPGA: 'ZDACW 36929' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:13:56.728 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:13:56.738 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:56.738 -07 000000608 INF: FPGA: Recv ZDACR 36929
17-03-17 19:13:56.748 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:13:56.748 -07 000000541 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 19:13:56.888 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:13:56.888 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:13:56.888 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:56.888 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1134235808, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:13:56.888 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:13:56.888 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:56.898 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:13:56.898 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:13:56.898 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:13:56.908 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:13:57.098 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 19:13:57.098 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 19:13:57.138 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:57.138 -07 000000512 INF: FPGA: Recv YRDPOS 143080
17-03-17 19:13:57.148 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:13:57.148 -07 000000561 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:57.148 -07 000000561 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:13:57.148 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.845 mm, average velocity = 2.190 mm/sec
17-03-17 19:13:58.098 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:58.098 -07 000000502 INF: FPGA: Recv YRDPOS 143080
17-03-17 19:13:58.108 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:13:58.108 -07 000000561 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:58.128 -07 000000561 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:13:58.128 -07 000000561 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:13:58.128 -07 000000561 INF: Y Motor: Moved to 69.8633 after 1418 ms (table move)
17-03-17 19:13:58.128 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169050 mm (DAC = 36929)
17-03-17 19:13:58.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.128 -07 000000541 INF: FPGA: Recv ZSGSRD 35607
17-03-17 19:13:58.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:13:58.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.138 -07 000000541 INF: FPGA: Recv ZSGSRD 35606
17-03-17 19:13:58.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.148 -07 000000541 INF: FPGA: Recv ZSGSRD 35601
17-03-17 19:13:58.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.158 -07 000000541 INF: FPGA: Recv ZSGSRD 35610
17-03-17 19:13:58.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.168 -07 000000561 INF: FPGA: Recv ZSGSRD 35616
17-03-17 19:13:58.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:13:58.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.178 -07 000000561 INF: FPGA: Recv ZSGSRD 35598
17-03-17 19:13:58.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.188 -07 000000512 INF: FPGA: Recv ZSGSRD 35603
17-03-17 19:13:58.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.198 -07 000000561 INF: FPGA: Recv ZSGSRD 35600
17-03-17 19:13:58.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.208 -07 000000512 INF: FPGA: Recv ZSGSRD 35601
17-03-17 19:13:58.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.218 -07 000000561 INF: FPGA: Recv ZSGSRD 35605
17-03-17 19:13:58.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:58.228 -07 000000561 INF: FPGA: Recv ZPIEZORD 31544
17-03-17 19:13:58.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.238 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.635 V. Piezo Error = -9.0 V.
17-03-17 19:13:58.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35605 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35604 (-168.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35598 (-168.1 uncal um), Max = 35616 (-168.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:13:58.238 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35605, posNoise = 11, negNoise = 7
17-03-17 19:13:58.238 -07 000000610 INF: Z Motor: After move to -0.169050, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:58.238 -07 000000610 INF: Z Motor: Settle wait time = 1419 ms, measure time = 107 ms (allowed 150 ms), total time = 1526 ms
17-03-17 19:13:58.238 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:13:58.288 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1578 ms
17-03-17 19:13:58.288 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:13:58.288 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.169057425318534. ----------
17-03-17 19:13:58.288 -07 000000610 INF: Cycle	23	Tile	13	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:13:58.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36753, sync = True, waitForSettling = True)
17-03-17 19:13:58.288 -07 000000610 INF: Z Motor: Moving to -0.168244 mm, started at -0.169057 mm, distance = 0.81 um
17-03-17 19:13:58.288 -07 000000610 INF: FPGA: Xmit ZDACW 36753\n [Z Motor]
17-03-17 19:13:58.288 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:13:58.298 -07 000000610 INF: FPGA: 'ZDACW 36753' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:13:58.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:58.298 -07 000000608 INF: FPGA: Recv ZDACR 36753
17-03-17 19:13:58.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:13:58.438 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.997626,
17-03-17 19:13:58.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.458 -07 000000608 INF: FPGA: Recv ZSGSRD 35486
17-03-17 19:13:58.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.468 -07 000000480 INF: FPGA: Recv ZSGSRD 35481
17-03-17 19:13:58.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.498 -07 000000480 INF: FPGA: Recv ZSGSRD 35478
17-03-17 19:13:58.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:13:58.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.508 -07 000000608 INF: FPGA: Recv ZSGSRD 35480
17-03-17 19:13:58.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.518 -07 000000608 INF: FPGA: Recv ZSGSRD 35481
17-03-17 19:13:58.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.528 -07 000000480 INF: FPGA: Recv ZSGSRD 35477
17-03-17 19:13:58.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.538 -07 000000480 INF: FPGA: Recv ZSGSRD 35485
17-03-17 19:13:58.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.548 -07 000000480 INF: FPGA: Recv ZSGSRD 35481
17-03-17 19:13:58.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.558 -07 000000431 INF: FPGA: Recv ZSGSRD 35475
17-03-17 19:13:58.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:13:58.568 -07 000000480 INF: FPGA: Recv ZSGSRD 35482
17-03-17 19:13:58.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:13:58.578 -07 000000431 INF: FPGA: Recv ZPIEZORD 31374
17-03-17 19:13:58.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:13:58.588 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.608 V. Piezo Error = -9.1 V.
17-03-17 19:13:58.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35481 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35481 (-167.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35475 (-167.4 uncal um), Max = 35486 (-167.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:13:58.588 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35481, posNoise = 5, negNoise = 6
17-03-17 19:13:58.588 -07 000000610 INF: Z Motor: After move to -0.168244, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:13:58.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 296 ms)
17-03-17 19:13:58.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:13:58.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:13:58.588 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:13:58.588 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:13:58.588 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:13:58.588 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:13:58.588 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:13:58.588 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:13:58.588 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:13:58.588 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:13:58.588 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:13:58.588 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:13:58.588 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:13:58.588 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:13:58.598 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:13:58.598 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:13:58.608 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:13:58.608 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:13:58.608 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:13:58.608 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:13:58.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 36929 150\n [Camera]
17-03-17 19:13:58.818 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:13:59.218 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:13:59.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:13:59.218 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:59.218 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:59.218 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 19:13:59.218 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:13:59.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:13:59.218 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:59.218 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:59.218 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 19:13:59.408 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36929 784
17-03-17 19:13:59.558 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:13:59.588 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:13:59.588 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:13:59.588 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:59.588 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:13:59.588 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:13:59.588 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:13:59.598 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:13:59.598 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:13:59.598 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:13:59.598 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:13:59.748 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:13:59.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:13:59.748 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:13:59.748 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:13:59.748 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:13:59.748 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:13:59.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:13:59.748 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:13:59.748 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:13:59.748 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 19:13:59.938 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:13:59.938 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:13:59.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 36929 150' command took 2 ms to send, 1316 ms to get response, and 1325 ms overall
17-03-17 19:13:59.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:13:59.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.168260823012955. ------
17-03-17 19:13:59.948 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:13:59.948 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17465 mm
17-03-17 19:13:59.948 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:13:59.948 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:13:59.948 -07 000000618 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 19:13:59.948 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38151, sync = True, waitForSettling = False)
17-03-17 19:13:59.948 -07 000000626 INF: Z Motor: Moving to -0.174644 mm, started at -0.168261 mm, distance = -6.38 um
17-03-17 19:13:59.948 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:13:59.958 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:13:59.958 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:13:59.958 -07 000000502 INF: FPGA: Recv YRDPOS 143080
17-03-17 19:13:59.968 -07 000000626 INF: FPGA: Xmit ZDACW 38151\n [Z Motor]
17-03-17 19:13:59.968 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:13:59.968 -07 000000618 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:13:59.968 -07 000000618 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:13:59.968 -07 000000618 INF: Y Motor: Moving 1343 steps-19
17-03-17 19:13:59.968 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:13:59.978 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:13:59.978 -07 000000626 INF: FPGA: 'ZDACW 38151' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:13:59.988 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:13:59.998 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:13:59.998 -07 000000561 INF: FPGA: Recv ZDACR 38151
17-03-17 19:14:00.008 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:14:00.008 -07 000000626 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 19:14:00.138 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:14:00.138 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:14:00.138 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:00.138 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:14:00.138 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:14:00.138 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:00.138 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:00.138 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:14:00.138 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:00.148 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:14:00.178 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:14:00.178 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:14:00.368 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 19:14:00.368 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 19:14:00.398 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:00.398 -07 000000431 INF: FPGA: Recv YRDPOS 144770
17-03-17 19:14:00.408 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:14:00.408 -07 000000618 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:00.408 -07 000000618 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:14:00.408 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.839 mm, average velocity = 2.098 mm/sec
17-03-17 19:14:01.358 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:01.358 -07 000000561 INF: FPGA: Recv YRDPOS 144770
17-03-17 19:14:01.368 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:01.368 -07 000000618 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:01.388 -07 000000618 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:14:01.388 -07 000000618 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:14:01.388 -07 000000618 INF: Y Motor: Moved to 70.6885 after 1434 ms (table move)
17-03-17 19:14:01.388 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174644 mm (DAC = 38151)
17-03-17 19:14:01.388 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:01.388 -07 000000608 INF: FPGA: Recv ZSGSRD 36479
17-03-17 19:14:01.398 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:14:01.398 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:01.398 -07 000000618 INF: FPGA: Recv ZSGSRD 36476
17-03-17 19:14:01.408 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:01.408 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:01.408 -07 000000512 INF: FPGA: Recv ZSGSRD 36472
17-03-17 19:14:01.418 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:01.418 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:01.418 -07 000000626 INF: FPGA: Recv ZSGSRD 36472
17-03-17 19:14:01.428 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:01.428 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:01.428 -07 000000608 INF: FPGA: Recv ZSGSRD 36471
17-03-17 19:14:01.438 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:01.438 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:01.438 -07 000000551 INF: FPGA: Recv ZSGSRD 36473
17-03-17 19:14:01.448 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:01.448 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:01.448 -07 000000551 INF: FPGA: Recv ZSGSRD 36483
17-03-17 19:14:01.458 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:01.458 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:01.458 -07 000000569 INF: FPGA: Recv ZSGSRD 36479
17-03-17 19:14:01.468 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:01.468 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:01.468 -07 000000541 INF: FPGA: Recv ZSGSRD 36481
17-03-17 19:14:01.478 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:01.478 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:01.478 -07 000000541 INF: FPGA: Recv ZSGSRD 36473
17-03-17 19:14:01.488 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:01.488 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:01.488 -07 000000541 INF: FPGA: Recv ZPIEZORD 32719
17-03-17 19:14:01.498 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:01.498 -07 000000480 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.821 V. Piezo Error = -8.3 V.
17-03-17 19:14:01.498 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36476 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36474 (-173.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36471 (-173.7 uncal um), Max = 36483 (-173.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:14:01.498 -07 000000480 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36476, posNoise = 7, negNoise = 5
17-03-17 19:14:01.498 -07 000000480 INF: Z Motor: After move to -0.174644, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:01.498 -07 000000480 INF: Z Motor: Settle wait time = 1437 ms, measure time = 106 ms (allowed 150 ms), total time = 1543 ms
17-03-17 19:14:01.498 -07 000000480 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:14:01.548 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 19:14:01.548 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:14:01.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:01.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:01.548 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:01.548 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:01.548 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:14:01.548 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:01.548 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:14:01.548 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:14:01.558 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:14:01.558 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:14:01.568 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:14:01.568 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:14:01.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:14:01.618 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:14:01.668 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:14:01.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:14:01.818 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:14:01.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:14:01.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:14:01.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460015264, 0x0, 559484976) start.
17-03-17 19:14:01.858 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:14:01.858 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 19:14:01.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 19:14:01.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460015264, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:14:01.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:01.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:14:01.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:14:01.958 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:14:01.958 -07 000000569 INF: Autofocus start
17-03-17 19:14:01.958 -07 000000569 INF: MeasureProfile start
17-03-17 19:14:01.958 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:14:01.968 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:14:01.968 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:14:01.968 -07 000000569 INF: MeasureProfile done
17-03-17 19:14:01.968 -07 000000569 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:14:01.968 -07 000000569 INF: Autofocus finished
17-03-17 19:14:02.168 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:14:02.168 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:14:02.168 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.174652914094008. ----------
17-03-17 19:14:02.168 -07 000000610 INF: Cycle	23	Tile	14	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:14:02.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36666, sync = True, waitForSettling = True)
17-03-17 19:14:02.178 -07 000000610 INF: Z Motor: Moving to -0.167846 mm, started at -0.174653 mm, distance = 6.81 um
17-03-17 19:14:02.178 -07 000000610 INF: FPGA: Xmit ZDACW 36666\n [Z Motor]
17-03-17 19:14:02.178 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:14:02.188 -07 000000610 INF: FPGA: 'ZDACW 36666' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:14:02.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:02.188 -07 000000480 INF: FPGA: Recv ZDACR 36666
17-03-17 19:14:02.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:02.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:14:02.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:02.348 -07 000000626 INF: FPGA: Recv ZSGSRD 35417
17-03-17 19:14:02.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:02.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:02.358 -07 000000480 INF: FPGA: Recv ZSGSRD 35415
17-03-17 19:14:02.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:02.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:02.368 -07 000000480 INF: FPGA: Recv ZSGSRD 35415
17-03-17 19:14:02.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:02.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:02.378 -07 000000480 INF: FPGA: Recv ZSGSRD 35419
17-03-17 19:14:02.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:02.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:02.388 -07 000000608 INF: FPGA: Recv ZSGSRD 35417
17-03-17 19:14:02.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:02.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:02.398 -07 000000626 INF: FPGA: Recv ZSGSRD 35419
17-03-17 19:14:02.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:02.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:02.408 -07 000000626 INF: FPGA: Recv ZSGSRD 35419
17-03-17 19:14:02.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:02.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:02.418 -07 000000626 INF: FPGA: Recv ZSGSRD 35423
17-03-17 19:14:02.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:02.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:02.428 -07 000000480 INF: FPGA: Recv ZSGSRD 35417
17-03-17 19:14:02.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:02.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:02.438 -07 000000608 INF: FPGA: Recv ZSGSRD 35417
17-03-17 19:14:02.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:02.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:02.448 -07 000000480 INF: FPGA: Recv ZPIEZORD 31297
17-03-17 19:14:02.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:02.458 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.595 V. Piezo Error = -9.1 V.
17-03-17 19:14:02.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35418 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35417 (-167.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35415 (-167.0 uncal um), Max = 35423 (-167.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:14:02.458 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35418, posNoise = 5, negNoise = 3
17-03-17 19:14:02.458 -07 000000610 INF: Z Motor: After move to -0.167846, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:02.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:14:02.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:02.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:02.458 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:02.458 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:02.458 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:14:02.458 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:02.458 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:14:02.458 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:14:02.458 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:14:02.468 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:14:02.468 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:14:02.468 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:14:02.468 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:14:02.468 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:14:02.468 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:14:02.468 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:14:02.478 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:14:02.478 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:14:02.488 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:14:02.488 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:14:02.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 36843 150\n [Camera]
17-03-17 19:14:02.688 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:14:03.088 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:14:03.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:14:03.088 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:03.088 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:03.088 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 19:14:03.088 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:14:03.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:14:03.088 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:03.088 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:03.088 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:14:03.468 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:14:03.468 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:14:03.468 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:03.468 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:14:03.468 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:14:03.468 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:03.468 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:03.468 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:14:03.468 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:03.478 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:14:03.478 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36843 784
17-03-17 19:14:03.478 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:14:03.618 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:14:03.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:14:03.618 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:03.748 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:14:03.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:14:03.748 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:03.748 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 19:14:03.748 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:03.758 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:03.758 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:14:03.808 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:14:03.808 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:14:03.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 36843 150' command took 2 ms to send, 1318 ms to get response, and 1326 ms overall
17-03-17 19:14:03.808 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.168498
17-03-17 19:14:03.818 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16850 mm
17-03-17 19:14:03.818 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:14:03.818 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.012614,
17-03-17 19:14:03.818 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 36808, sync = True, waitForSettling = False)
17-03-17 19:14:03.818 -07 000000541 INF: Z Motor: Moving to -0.168496 mm, started at -0.167856 mm, distance = -0.64 um
17-03-17 19:14:03.818 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:14:03.818 -07 000000608 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 19:14:03.828 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:03.828 -07 000000012 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:14:03.838 -07 000000541 INF: FPGA: Xmit ZDACW 36808\n [Z Motor]
17-03-17 19:14:03.838 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:14:03.838 -07 000000608 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:03.838 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:14:03.838 -07 000000608 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:14:03.838 -07 000000608 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:14:03.848 -07 000000541 INF: FPGA: 'ZDACW 36808' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:14:03.858 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:14:03.868 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:03.868 -07 000000480 INF: FPGA: Recv ZDACR 36808
17-03-17 19:14:03.878 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:14:03.878 -07 000000541 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 19:14:04.138 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:14:04.138 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:14:04.138 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:04.138 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:14:04.138 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:14:04.138 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:04.138 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:14:04.148 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:04.148 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-17 19:14:04.148 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:14:04.228 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 19:14:04.228 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:14:04.288 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:04.288 -07 000000569 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:14:04.298 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:14:04.298 -07 000000608 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:04.298 -07 000000608 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:14:04.298 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-17 19:14:05.248 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:05.248 -07 000000512 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:14:05.258 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.258 -07 000000608 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:05.278 -07 000000608 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:14:05.278 -07 000000608 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:14:05.278 -07 000000608 INF: Y Motor: Moved to 71.5190 after 1456 ms (table move)
17-03-17 19:14:05.278 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168496 mm (DAC = 36808)
17-03-17 19:14:05.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.278 -07 000000012 INF: FPGA: Recv ZSGSRD 35522
17-03-17 19:14:05.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:14:05.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.288 -07 000000012 INF: FPGA: Recv ZSGSRD 35522
17-03-17 19:14:05.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.298 -07 000000012 INF: FPGA: Recv ZSGSRD 35524
17-03-17 19:14:05.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.308 -07 000000012 INF: FPGA: Recv ZSGSRD 35522
17-03-17 19:14:05.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.318 -07 000000012 INF: FPGA: Recv ZSGSRD 35520
17-03-17 19:14:05.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.328 -07 000000012 INF: FPGA: Recv ZSGSRD 35524
17-03-17 19:14:05.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.338 -07 000000480 INF: FPGA: Recv ZSGSRD 35510
17-03-17 19:14:05.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.348 -07 000000569 INF: FPGA: Recv ZSGSRD 35515
17-03-17 19:14:05.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.358 -07 000000431 INF: FPGA: Recv ZSGSRD 35513
17-03-17 19:14:05.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.368 -07 000000431 INF: FPGA: Recv ZSGSRD 35521
17-03-17 19:14:05.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:05.378 -07 000000561 INF: FPGA: Recv ZPIEZORD 31474
17-03-17 19:14:05.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.388 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.617 V. Piezo Error = -8.9 V.
17-03-17 19:14:05.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35519 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35522 (-167.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35510 (-167.6 uncal um), Max = 35524 (-167.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:14:05.388 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35519, posNoise = 5, negNoise = 9
17-03-17 19:14:05.388 -07 000000610 INF: Z Motor: After move to -0.168496, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:05.388 -07 000000610 INF: Z Motor: Settle wait time = 1459 ms, measure time = 108 ms (allowed 150 ms), total time = 1567 ms
17-03-17 19:14:05.388 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:14:05.438 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-17 19:14:05.438 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:14:05.438 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.168504943074342. ----------
17-03-17 19:14:05.438 -07 000000610 INF: Cycle	23	Tile	15	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:14:05.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36632, sync = True, waitForSettling = True)
17-03-17 19:14:05.438 -07 000000610 INF: Z Motor: Moving to -0.167691 mm, started at -0.168505 mm, distance = 0.81 um
17-03-17 19:14:05.438 -07 000000610 INF: FPGA: Xmit ZDACW 36632\n [Z Motor]
17-03-17 19:14:05.438 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:14:05.448 -07 000000610 INF: FPGA: 'ZDACW 36632' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:14:05.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:05.448 -07 000000561 INF: FPGA: Recv ZDACR 36632
17-03-17 19:14:05.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:14:05.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.608 -07 000000561 INF: FPGA: Recv ZSGSRD 35402
17-03-17 19:14:05.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:05.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.618 -07 000000551 INF: FPGA: Recv ZSGSRD 35392
17-03-17 19:14:05.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.628 -07 000000561 INF: FPGA: Recv ZSGSRD 35396
17-03-17 19:14:05.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.638 -07 000000551 INF: FPGA: Recv ZSGSRD 35394
17-03-17 19:14:05.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.648 -07 000000561 INF: FPGA: Recv ZSGSRD 35397
17-03-17 19:14:05.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.658 -07 000000561 INF: FPGA: Recv ZSGSRD 35392
17-03-17 19:14:05.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.668 -07 000000561 INF: FPGA: Recv ZSGSRD 35392
17-03-17 19:14:05.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.678 -07 000000561 INF: FPGA: Recv ZSGSRD 35400
17-03-17 19:14:05.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.688 -07 000000561 INF: FPGA: Recv ZSGSRD 35393
17-03-17 19:14:05.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:05.698 -07 000000551 INF: FPGA: Recv ZSGSRD 35393
17-03-17 19:14:05.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:05.708 -07 000000551 INF: FPGA: Recv ZPIEZORD 31320
17-03-17 19:14:05.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:05.718 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.590 V. Piezo Error = -9.0 V.
17-03-17 19:14:05.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35395 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35394 (-166.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35392 (-166.8 uncal um), Max = 35402 (-166.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:14:05.718 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35395, posNoise = 7, negNoise = 3
17-03-17 19:14:05.718 -07 000000610 INF: Z Motor: After move to -0.167691, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:05.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:14:05.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:05.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:05.718 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:05.718 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:05.718 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:14:05.718 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:05.718 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:14:05.718 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:14:05.728 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:14:05.728 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:14:05.728 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:14:05.728 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:14:05.728 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:14:05.728 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:14:05.728 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:14:05.728 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:14:05.738 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:14:05.738 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:14:05.738 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:14:05.738 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:14:05.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 36808 150\n [Camera]
17-03-17 19:14:05.938 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:14:06.338 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:14:06.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:14:06.338 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:06.338 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:14:06.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:14:06.338 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:06.348 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:06.348 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:14:06.348 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:06.348 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:14:06.718 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 19:14:06.718 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 19:14:06.718 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:06.718 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:14:06.718 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:14:06.718 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:06.718 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:14:06.718 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:14:06.718 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:06.728 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:14:06.728 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36808 784
17-03-17 19:14:06.728 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:14:06.728 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:14:06.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:14:06.868 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:14:06.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:14:06.878 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:06.978 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:14:06.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:14:06.988 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:06.988 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:06.988 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-17 19:14:06.988 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:06.998 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:14:07.068 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:14:07.068 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:14:07.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 36808 150' command took 2 ms to send, 1320 ms to get response, and 1325 ms overall
17-03-17 19:14:07.068 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167589
17-03-17 19:14:07.068 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16759 mm
17-03-17 19:14:07.068 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:14:07.068 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:14:07.068 -07 000000480 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 19:14:07.068 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:07.068 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 36610, sync = True, waitForSettling = False)
17-03-17 19:14:07.068 -07 000000512 INF: Z Motor: Moving to -0.167590 mm, started at -0.167708 mm, distance = 0.12 um
17-03-17 19:14:07.068 -07 000000561 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:14:07.078 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:14:07.078 -07 000000480 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:07.078 -07 000000480 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:14:07.078 -07 000000480 INF: Y Motor: Moving 1350 steps-28
17-03-17 19:14:07.078 -07 000000512 INF: FPGA: Xmit ZDACW 36610\n [Z Motor]
17-03-17 19:14:07.078 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:14:07.088 -07 000000512 INF: FPGA: 'ZDACW 36610' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:14:07.088 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:07.088 -07 000000618 INF: FPGA: Recv ZDACR 36610
17-03-17 19:14:07.098 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:14:07.098 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:07.098 -07 000000512 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 19:14:07.368 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:14:07.368 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:14:07.368 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:07.368 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:14:07.368 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:14:07.368 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:07.368 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:07.368 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 499 ms.
17-03-17 19:14:07.378 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:07.378 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:14:07.468 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:14:07.468 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:14:07.508 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:07.508 -07 000000541 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:14:07.518 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:14:07.518 -07 000000480 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:07.518 -07 000000480 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:14:07.518 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 19:14:08.468 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:08.468 -07 000000502 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:14:08.478 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.478 -07 000000480 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:08.498 -07 000000480 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:14:08.498 -07 000000480 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:14:08.498 -07 000000480 INF: Y Motor: Moved to 72.3496 after 1425 ms (table move)
17-03-17 19:14:08.498 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167590 mm (DAC = 36610)
17-03-17 19:14:08.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.498 -07 000000541 INF: FPGA: Recv ZSGSRD 35384
17-03-17 19:14:08.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:14:08.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.508 -07 000000480 INF: FPGA: Recv ZSGSRD 35379
17-03-17 19:14:08.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.518 -07 000000502 INF: FPGA: Recv ZSGSRD 35378
17-03-17 19:14:08.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.528 -07 000000480 INF: FPGA: Recv ZSGSRD 35376
17-03-17 19:14:08.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.538 -07 000000541 INF: FPGA: Recv ZSGSRD 35378
17-03-17 19:14:08.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.548 -07 000000512 INF: FPGA: Recv ZSGSRD 35383
17-03-17 19:14:08.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.558 -07 000000541 INF: FPGA: Recv ZSGSRD 35379
17-03-17 19:14:08.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.568 -07 000000626 INF: FPGA: Recv ZSGSRD 35375
17-03-17 19:14:08.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.578 -07 000000480 INF: FPGA: Recv ZSGSRD 35375
17-03-17 19:14:08.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.588 -07 000000626 INF: FPGA: Recv ZSGSRD 35375
17-03-17 19:14:08.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:08.598 -07 000000608 INF: FPGA: Recv ZPIEZORD 31269
17-03-17 19:14:08.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.608 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.586 V. Piezo Error = -9.1 V.
17-03-17 19:14:08.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35378 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35378 (-166.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35375 (-166.7 uncal um), Max = 35384 (-166.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:14:08.608 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35378, posNoise = 6, negNoise = 3
17-03-17 19:14:08.608 -07 000000610 INF: Z Motor: After move to -0.167590, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:08.608 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 107 ms (allowed 150 ms), total time = 1534 ms
17-03-17 19:14:08.608 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:14:08.658 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 19:14:08.658 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:14:08.658 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.167599129162354. ----------
17-03-17 19:14:08.658 -07 000000610 INF: Cycle	23	Tile	16	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:14:08.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36433, sync = True, waitForSettling = True)
17-03-17 19:14:08.658 -07 000000610 INF: Z Motor: Moving to -0.166780 mm, started at -0.167599 mm, distance = 0.82 um
17-03-17 19:14:08.658 -07 000000610 INF: FPGA: Xmit ZDACW 36433\n [Z Motor]
17-03-17 19:14:08.658 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:14:08.668 -07 000000610 INF: FPGA: 'ZDACW 36433' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:14:08.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:08.668 -07 000000541 INF: FPGA: Recv ZDACR 36433
17-03-17 19:14:08.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:14:08.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.828 -07 000000608 INF: FPGA: Recv ZSGSRD 35253
17-03-17 19:14:08.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:08.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.838 -07 000000561 INF: FPGA: Recv ZSGSRD 35254
17-03-17 19:14:08.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.848 -07 000000480 INF: FPGA: Recv ZSGSRD 35257
17-03-17 19:14:08.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.858 -07 000000541 INF: FPGA: Recv ZSGSRD 35247
17-03-17 19:14:08.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.868 -07 000000512 INF: FPGA: Recv ZSGSRD 35253
17-03-17 19:14:08.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.878 -07 000000541 INF: FPGA: Recv ZSGSRD 35252
17-03-17 19:14:08.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.888 -07 000000512 INF: FPGA: Recv ZSGSRD 35253
17-03-17 19:14:08.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.908 -07 000000512 INF: FPGA: Recv ZSGSRD 35250
17-03-17 19:14:08.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:14:08.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.918 -07 000000551 INF: FPGA: Recv ZSGSRD 35257
17-03-17 19:14:08.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:08.928 -07 000000551 INF: FPGA: Recv ZSGSRD 35253
17-03-17 19:14:08.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:08.938 -07 000000551 INF: FPGA: Recv ZPIEZORD 31098
17-03-17 19:14:08.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:08.948 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.559 V. Piezo Error = -9.2 V.
17-03-17 19:14:08.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35253 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35253 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35247 (-165.9 uncal um), Max = 35257 (-166.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:14:08.948 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35253, posNoise = 4, negNoise = 6
17-03-17 19:14:08.948 -07 000000610 INF: Z Motor: After move to -0.166780, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:08.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-17 19:14:08.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:08.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:08.948 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:08.948 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:08.958 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:14:08.958 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:08.958 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:14:08.958 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:14:08.958 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:14:08.958 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:14:08.968 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:14:08.968 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:14:08.978 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:14:08.978 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:14:08.978 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:14:08.978 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:14:08.978 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:14:08.978 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:14:08.998 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:14:08.998 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:14:08.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 36610 150\n [Camera]
17-03-17 19:14:09.198 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:14:09.218 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.989471,
17-03-17 19:14:09.598 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:14:09.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:14:09.598 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:09.598 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:09.598 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:14:09.988 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:14:09.988 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:14:09.988 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:09.998 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:09.998 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:14:09.998 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:14:10.008 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36610 784
17-03-17 19:14:10.008 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:14:10.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:14:10.008 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:10.008 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:10.008 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:14:10.378 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:14:10.378 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:14:10.378 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:10.378 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:14:10.388 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:14:10.398 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:14:10.398 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:14:10.398 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:14:10.398 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:14:10.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:14:10.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 36610 150' command took 2 ms to send, 1395 ms to get response, and 1403 ms overall
17-03-17 19:14:10.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:14:10.398 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:10.398 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:10.398 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 19:14:10.398 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:10.398 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:10.398 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:14:10.498 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167347
17-03-17 19:14:10.498 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16735 mm
17-03-17 19:14:10.498 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:14:10.498 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:14:10.498 -07 000000608 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 19:14:10.498 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 36557, sync = True, waitForSettling = False)
17-03-17 19:14:10.498 -07 000000012 INF: Z Motor: Moving to -0.167347 mm, started at -0.166796 mm, distance = -0.55 um
17-03-17 19:14:10.498 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:10.498 -07 000000502 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:14:10.508 -07 000000012 INF: FPGA: Xmit ZDACW 36557\n [Z Motor]
17-03-17 19:14:10.508 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:14:10.508 -07 000000608 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:10.508 -07 000000608 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:14:10.508 -07 000000608 INF: Y Motor: Moving 1349 steps-27
17-03-17 19:14:10.508 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:14:10.518 -07 000000012 INF: FPGA: 'ZDACW 36557' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:14:10.518 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:10.518 -07 000000561 INF: FPGA: Recv ZDACR 36557
17-03-17 19:14:10.528 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:14:10.528 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:10.528 -07 000000012 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 19:14:10.778 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:14:10.778 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:14:10.778 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:10.778 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:14:10.778 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:14:10.778 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:10.788 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:10.788 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:10.788 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:14:10.788 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:14:10.898 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:14:10.898 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 19:14:10.938 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:10.938 -07 000000541 INF: FPGA: Recv YRDPOS 149864
17-03-17 19:14:10.948 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:14:10.948 -07 000000608 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:10.948 -07 000000608 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 19:14:10.948 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.843 mm, average velocity = 2.129 mm/sec
17-03-17 19:14:11.668 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:14:11.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:14:11.898 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:11.898 -07 000000626 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:14:11.908 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:11.908 -07 000000608 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:11.928 -07 000000608 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:14:11.928 -07 000000608 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:14:11.928 -07 000000608 INF: Y Motor: Moved to 73.1763 after 1426 ms (table move)
17-03-17 19:14:11.928 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167347 mm (DAC = 36557)
17-03-17 19:14:11.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:11.928 -07 000000626 INF: FPGA: Recv ZSGSRD 35345
17-03-17 19:14:11.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:14:11.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:11.938 -07 000000541 INF: FPGA: Recv ZSGSRD 35336
17-03-17 19:14:11.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:11.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:11.948 -07 000000502 INF: FPGA: Recv ZSGSRD 35336
17-03-17 19:14:11.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:11.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:11.958 -07 000000012 INF: FPGA: Recv ZSGSRD 35342
17-03-17 19:14:11.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:11.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:11.968 -07 000000561 INF: FPGA: Recv ZSGSRD 35342
17-03-17 19:14:11.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:11.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:11.978 -07 000000431 INF: FPGA: Recv ZSGSRD 35345
17-03-17 19:14:11.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:11.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:11.988 -07 000000502 INF: FPGA: Recv ZSGSRD 35341
17-03-17 19:14:11.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:11.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:11.998 -07 000000431 INF: FPGA: Recv ZSGSRD 35340
17-03-17 19:14:12.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:12.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:12.008 -07 000000561 INF: FPGA: Recv ZSGSRD 35338
17-03-17 19:14:12.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:12.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:12.018 -07 000000012 INF: FPGA: Recv ZSGSRD 35336
17-03-17 19:14:12.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:12.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:12.028 -07 000000012 INF: FPGA: Recv ZPIEZORD 31264
17-03-17 19:14:12.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:12.038 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.578 V. Piezo Error = -9.0 V.
17-03-17 19:14:12.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35340 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35340 (-166.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35336 (-166.5 uncal um), Max = 35345 (-166.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:14:12.038 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35340, posNoise = 5, negNoise = 4
17-03-17 19:14:12.038 -07 000000610 INF: Z Motor: After move to -0.167347, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:12.038 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 108 ms (allowed 150 ms), total time = 1536 ms
17-03-17 19:14:12.038 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:14:12.088 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 19:14:12.088 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:14:12.088 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.167355009100967. ----------
17-03-17 19:14:12.088 -07 000000610 INF: Cycle	23	Tile	17	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:14:12.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36380, sync = True, waitForSettling = True)
17-03-17 19:14:12.088 -07 000000610 INF: Z Motor: Moving to -0.166537 mm, started at -0.167355 mm, distance = 0.82 um
17-03-17 19:14:12.088 -07 000000610 INF: FPGA: Xmit ZDACW 36380\n [Z Motor]
17-03-17 19:14:12.088 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:14:12.098 -07 000000610 INF: FPGA: 'ZDACW 36380' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:14:12.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:12.098 -07 000000626 INF: FPGA: Recv ZDACR 36380
17-03-17 19:14:12.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:12.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:14:12.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:12.258 -07 000000608 INF: FPGA: Recv ZSGSRD 35214
17-03-17 19:14:12.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:12.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:12.268 -07 000000431 INF: FPGA: Recv ZSGSRD 35218
17-03-17 19:14:12.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:12.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:12.278 -07 000000608 INF: FPGA: Recv ZSGSRD 35220
17-03-17 19:14:12.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:12.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:12.288 -07 000000608 INF: FPGA: Recv ZSGSRD 35214
17-03-17 19:14:12.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:12.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:12.298 -07 000000608 INF: FPGA: Recv ZSGSRD 35215
17-03-17 19:14:12.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:12.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:12.308 -07 000000608 INF: FPGA: Recv ZSGSRD 35215
17-03-17 19:14:12.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:12.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:12.318 -07 000000608 INF: FPGA: Recv ZSGSRD 35214
17-03-17 19:14:12.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:12.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:12.328 -07 000000608 INF: FPGA: Recv ZSGSRD 35216
17-03-17 19:14:12.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:12.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:12.338 -07 000000608 INF: FPGA: Recv ZSGSRD 35216
17-03-17 19:14:12.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:12.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:12.348 -07 000000608 INF: FPGA: Recv ZSGSRD 35214
17-03-17 19:14:12.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:14:12.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:12.358 -07 000000608 INF: FPGA: Recv ZPIEZORD 31108
17-03-17 19:14:12.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:12.368 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.551 V. Piezo Error = -9.1 V.
17-03-17 19:14:12.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35216 (-165.7 uncal um), Error = 0.8 uncal um, Median = 35215 (-165.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35214 (-165.7 uncal um), Max = 35220 (-165.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 19:14:12.368 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35216, posNoise = 4, negNoise = 2
17-03-17 19:14:12.368 -07 000000610 INF: Z Motor: After move to -0.166537, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:12.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:14:12.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:12.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:12.368 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:12.368 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:12.368 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:14:12.368 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:12.368 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:14:12.368 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:14:12.378 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:14:12.378 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:14:12.388 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:14:12.388 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:14:12.388 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:14:12.388 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:14:12.388 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:14:12.388 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:14:12.398 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:14:12.398 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:14:12.408 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 19:14:12.408 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:14:12.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 36557 150\n [Camera]
17-03-17 19:14:12.608 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:14:13.008 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:14:13.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:14:13.008 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:13.008 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:13.008 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:14:13.388 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:14:13.388 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:14:13.388 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:13.388 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:13.388 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:14:13.398 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:14:13.398 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36557 784
17-03-17 19:14:13.398 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:14:13.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:14:13.408 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:13.518 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:13.518 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:14:13.898 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:14:13.898 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:14:13.898 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:13.898 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:13.898 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 499 ms.
17-03-17 19:14:13.918 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:14:13.918 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:14:13.918 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:14:13.918 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:14:13.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:14:13.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 36557 150' command took 2 ms to send, 1503 ms to get response, and 1507 ms overall
17-03-17 19:14:13.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:14:13.918 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:13.918 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:13.928 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:13.928 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:14:13.928 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:13.928 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:14:14.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:14:14.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166558406795389. ------
17-03-17 19:14:14.018 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:14:14.018 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17302 mm
17-03-17 19:14:14.018 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:14:14.018 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:14:14.028 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:14:14.028 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37796, sync = True, waitForSettling = False)
17-03-17 19:14:14.028 -07 000000569 INF: Z Motor: Moving to -0.173019 mm, started at -0.166558 mm, distance = -6.46 um
17-03-17 19:14:14.028 -07 000000569 INF: FPGA: Xmit ZDACW 37796\n [Z Motor]
17-03-17 19:14:14.028 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:14:14.028 -07 000000541 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 19:14:14.028 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:14:14.038 -07 000000569 INF: FPGA: 'ZDACW 37796' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:14.038 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:14.038 -07 000000626 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:14:14.048 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:14:14.048 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:14:14.048 -07 000000541 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:14.048 -07 000000541 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:14:14.048 -07 000000541 INF: Y Motor: Moving 1354 steps-34
17-03-17 19:14:14.058 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:14.058 -07 000000626 INF: FPGA: Recv ZDACR 37796
17-03-17 19:14:14.068 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:14:14.068 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:14:14.068 -07 000000569 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 19:14:14.248 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:14:14.248 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 19:14:14.308 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:14:14.308 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:14:14.308 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:14.318 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:14:14.318 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:14:14.318 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:14:14.318 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:14:14.318 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:14.328 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:14.328 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:14:14.438 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:14:14.438 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:14:14.468 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:14.478 -07 000000480 INF: FPGA: Recv YRDPOS 151568
17-03-17 19:14:14.478 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:14:14.478 -07 000000541 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:14.478 -07 000000541 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:14:14.478 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 19:14:14.578 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.977204,
17-03-17 19:14:15.428 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:15.428 -07 000000608 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:14:15.438 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:15.438 -07 000000541 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:15.448 -07 000000541 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:14:15.448 -07 000000541 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:14:15.448 -07 000000541 INF: Y Motor: Moved to 74.0083 after 1423 ms (table move)
17-03-17 19:14:15.458 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173019 mm (DAC = 37796)
17-03-17 19:14:15.458 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:15.458 -07 000000618 INF: FPGA: Recv ZSGSRD 36224
17-03-17 19:14:15.468 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:15.468 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:15.468 -07 000000569 INF: FPGA: Recv ZSGSRD 36217
17-03-17 19:14:15.478 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:15.478 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:15.478 -07 000000626 INF: FPGA: Recv ZSGSRD 36219
17-03-17 19:14:15.488 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:15.488 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:15.488 -07 000000512 INF: FPGA: Recv ZSGSRD 36224
17-03-17 19:14:15.498 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:15.498 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:15.498 -07 000000480 INF: FPGA: Recv ZSGSRD 36224
17-03-17 19:14:15.508 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:15.508 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:15.508 -07 000000541 INF: FPGA: Recv ZSGSRD 36227
17-03-17 19:14:15.518 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:15.518 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:15.518 -07 000000618 INF: FPGA: Recv ZSGSRD 36223
17-03-17 19:14:15.528 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:15.528 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:15.528 -07 000000561 INF: FPGA: Recv ZSGSRD 36221
17-03-17 19:14:15.538 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:15.538 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:15.538 -07 000000608 INF: FPGA: Recv ZSGSRD 36220
17-03-17 19:14:15.548 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:15.548 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:15.548 -07 000000569 INF: FPGA: Recv ZSGSRD 36222
17-03-17 19:14:15.558 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:15.558 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:15.558 -07 000000626 INF: FPGA: Recv ZPIEZORD 32434
17-03-17 19:14:15.568 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:15.568 -07 000000502 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.767 V. Piezo Error = -8.4 V.
17-03-17 19:14:15.568 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36222 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36222 (-172.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36217 (-172.1 uncal um), Max = 36227 (-172.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:14:15.568 -07 000000502 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36222, posNoise = 5, negNoise = 5
17-03-17 19:14:15.568 -07 000000502 INF: Z Motor: After move to -0.173019, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:15.568 -07 000000502 INF: Z Motor: Settle wait time = 1430 ms, measure time = 110 ms (allowed 150 ms), total time = 1540 ms
17-03-17 19:14:15.568 -07 000000502 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 19:14:15.608 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 19:14:15.608 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:14:15.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:15.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:16.248 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:16.248 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:16.248 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:14:16.248 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:16.248 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:14:16.248 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:14:16.248 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:14:16.248 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:14:16.258 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:14:16.258 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:14:16.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:14:16.308 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:14:16.508 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:14:16.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:14:16.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:14:16.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460146392, 0x0, 559484976) start.
17-03-17 19:14:16.548 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:14:16.548 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 19:14:16.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 287 ms overall
17-03-17 19:14:16.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460146392, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:14:16.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:16.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:14:16.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:14:16.648 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:14:16.648 -07 000000569 INF: Autofocus start
17-03-17 19:14:16.648 -07 000000569 INF: MeasureProfile start
17-03-17 19:14:16.648 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:14:16.658 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:14:16.658 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:14:16.668 -07 000000569 INF: MeasureProfile done
17-03-17 19:14:16.668 -07 000000569 INF: X=64  Z correction [um]=0.2557664
17-03-17 19:14:16.668 -07 000000569 INF: Autofocus finished
17-03-17 19:14:16.668 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:14:16.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:14:16.858 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:14:16.858 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 19:14:16.858 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.17302116421. ----------
17-03-17 19:14:16.858 -07 000000610 INF: Cycle	23	Tile	18	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:14:16.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36364, sync = True, waitForSettling = True)
17-03-17 19:14:16.868 -07 000000610 INF: Z Motor: Moving to -0.166464 mm, started at -0.173021 mm, distance = 6.56 um
17-03-17 19:14:16.868 -07 000000610 INF: FPGA: Xmit ZDACW 36364\n [Z Motor]
17-03-17 19:14:16.868 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:14:16.878 -07 000000610 INF: FPGA: 'ZDACW 36364' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:14:16.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:16.878 -07 000000561 INF: FPGA: Recv ZDACR 36364
17-03-17 19:14:16.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:16.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:14:17.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:17.038 -07 000000608 INF: FPGA: Recv ZSGSRD 35202
17-03-17 19:14:17.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:17.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:17.048 -07 000000512 INF: FPGA: Recv ZSGSRD 35207
17-03-17 19:14:17.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:17.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:17.058 -07 000000608 INF: FPGA: Recv ZSGSRD 35213
17-03-17 19:14:17.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:17.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:17.068 -07 000000541 INF: FPGA: Recv ZSGSRD 35203
17-03-17 19:14:17.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:17.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:17.078 -07 000000512 INF: FPGA: Recv ZSGSRD 35200
17-03-17 19:14:17.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:17.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:17.088 -07 000000541 INF: FPGA: Recv ZSGSRD 35211
17-03-17 19:14:17.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:17.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:17.098 -07 000000480 INF: FPGA: Recv ZSGSRD 35211
17-03-17 19:14:17.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:17.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:17.108 -07 000000561 INF: FPGA: Recv ZSGSRD 35206
17-03-17 19:14:17.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:17.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:17.118 -07 000000431 INF: FPGA: Recv ZSGSRD 35197
17-03-17 19:14:17.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:14:17.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:17.128 -07 000000541 INF: FPGA: Recv ZSGSRD 35203
17-03-17 19:14:17.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:17.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:17.138 -07 000000480 INF: FPGA: Recv ZPIEZORD 31068
17-03-17 19:14:17.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:17.148 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.549 V. Piezo Error = -9.1 V.
17-03-17 19:14:17.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35205 (-165.6 uncal um), Error = 0.8 uncal um, Median = 35204 (-165.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35197 (-165.6 uncal um), Max = 35213 (-165.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:14:17.148 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35205, posNoise = 8, negNoise = 8
17-03-17 19:14:17.148 -07 000000610 INF: Z Motor: After move to -0.166464, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:17.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:14:17.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:17.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:17.148 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:17.148 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:14:17.148 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:17.148 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:17.148 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:14:17.148 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:14:17.148 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:14:17.148 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:14:17.148 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:14:17.148 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:14:17.158 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:14:17.158 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 6 ms.
17-03-17 19:14:17.158 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:14:17.158 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:14:17.168 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 19:14:17.168 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:14:17.168 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 19:14:17.168 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:14:17.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 36541 150\n [Camera]
17-03-17 19:14:17.368 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:14:17.768 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:14:17.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:14:17.768 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:17.778 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:17.778 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:14:17.778 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:14:17.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:14:17.778 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:17.888 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:17.888 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:14:17.968 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36541 784
17-03-17 19:14:18.118 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:14:18.168 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:14:18.168 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:14:18.168 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:18.168 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:18.168 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:14:18.278 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:14:18.278 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:14:18.278 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:18.288 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:18.288 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 514 ms.
17-03-17 19:14:18.308 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:14:18.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:14:18.308 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:18.308 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:14:18.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:14:18.308 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:18.318 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:18.318 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:14:18.318 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:18.318 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:14:18.498 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:14:18.498 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:14:18.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 36541 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-17 19:14:18.498 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.166868
17-03-17 19:14:18.498 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16687 mm
17-03-17 19:14:18.498 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:14:18.508 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:14:18.508 -07 000000541 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 19:14:18.508 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 36452, sync = True, waitForSettling = False)
17-03-17 19:14:18.508 -07 000000569 INF: Z Motor: Moving to -0.166867 mm, started at -0.166488 mm, distance = -0.38 um
17-03-17 19:14:18.508 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:18.508 -07 000000431 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:14:18.518 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:18.518 -07 000000569 INF: FPGA: Xmit ZDACW 36452\n [Z Motor]
17-03-17 19:14:18.518 -07 000000541 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:18.518 -07 000000541 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:14:18.518 -07 000000541 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:14:18.518 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:14:18.528 -07 000000569 INF: FPGA: 'ZDACW 36452' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:14:18.528 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:14:18.538 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:18.538 -07 000000512 INF: FPGA: Recv ZDACR 36452
17-03-17 19:14:18.548 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:14:18.548 -07 000000569 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 19:14:18.718 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:14:18.718 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:14:18.718 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:18.718 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:14:18.718 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:14:18.718 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:18.718 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:18.718 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 19:14:18.718 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:18.728 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 19:14:18.898 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 19:14:18.898 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 19:14:18.918 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:18.928 -07 000000431 INF: FPGA: Recv YRDPOS 153256
17-03-17 19:14:18.928 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 19:14:18.928 -07 000000541 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:18.928 -07 000000541 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 19:14:18.928 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.844 mm, average velocity = 2.193 mm/sec
17-03-17 19:14:19.878 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:19.878 -07 000000431 INF: FPGA: Recv YRDPOS 153256
17-03-17 19:14:19.888 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:19.888 -07 000000541 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:19.898 -07 000000541 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:14:19.898 -07 000000541 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:14:19.898 -07 000000541 INF: Y Motor: Moved to 74.8320 after 1394 ms (table move)
17-03-17 19:14:19.898 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166867 mm (DAC = 36452)
17-03-17 19:14:19.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:19.908 -07 000000431 INF: FPGA: Recv ZSGSRD 35268
17-03-17 19:14:19.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:14:19.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:19.908 -07 000000626 INF: FPGA: Recv ZSGSRD 35272
17-03-17 19:14:19.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:19.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:19.918 -07 000000480 INF: FPGA: Recv ZSGSRD 35270
17-03-17 19:14:19.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:19.938 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.978563,
17-03-17 19:14:19.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:19.948 -07 000000431 INF: FPGA: Recv ZSGSRD 35266
17-03-17 19:14:19.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:14:19.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:19.958 -07 000000608 INF: FPGA: Recv ZSGSRD 35268
17-03-17 19:14:19.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:19.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:19.978 -07 000000626 INF: FPGA: Recv ZSGSRD 35268
17-03-17 19:14:19.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:14:20.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:20.008 -07 000000431 INF: FPGA: Recv ZSGSRD 35264
17-03-17 19:14:20.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:14:20.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:20.018 -07 000000512 INF: FPGA: Recv ZSGSRD 35256
17-03-17 19:14:20.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:20.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:20.028 -07 000000541 INF: FPGA: Recv ZSGSRD 35265
17-03-17 19:14:20.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:20.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:20.038 -07 000000512 INF: FPGA: Recv ZSGSRD 35268
17-03-17 19:14:20.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:20.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:20.048 -07 000000561 INF: FPGA: Recv ZPIEZORD 31195
17-03-17 19:14:20.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:20.058 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.562 V. Piezo Error = -9.0 V.
17-03-17 19:14:20.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35266 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35268 (-166.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35256 (-165.9 uncal um), Max = 35272 (-166.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:14:20.058 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35266, posNoise = 6, negNoise = 10
17-03-17 19:14:20.058 -07 000000610 INF: Z Motor: After move to -0.166867, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:20.058 -07 000000610 INF: Z Motor: Settle wait time = 1396 ms, measure time = 153 ms (allowed 150 ms), total time = 1549 ms
17-03-17 19:14:20.058 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 153 ms, longer than max expected time of 150 ms
17-03-17 19:14:20.058 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1552 ms
17-03-17 19:14:20.058 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:14:20.058 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.166879617402477. ----------
17-03-17 19:14:20.058 -07 000000610 INF: Cycle	23	Tile	19	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:14:20.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36276, sync = True, waitForSettling = True)
17-03-17 19:14:20.058 -07 000000610 INF: Z Motor: Moving to -0.166061 mm, started at -0.166880 mm, distance = 0.82 um
17-03-17 19:14:20.058 -07 000000610 INF: FPGA: Xmit ZDACW 36276\n [Z Motor]
17-03-17 19:14:20.068 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:14:20.068 -07 000000610 INF: FPGA: 'ZDACW 36276' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:14:20.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:20.068 -07 000000626 INF: FPGA: Recv ZDACR 36276
17-03-17 19:14:20.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:20.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:14:20.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:20.228 -07 000000431 INF: FPGA: Recv ZSGSRD 35140
17-03-17 19:14:20.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:20.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:20.238 -07 000000480 INF: FPGA: Recv ZSGSRD 35138
17-03-17 19:14:20.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:20.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:20.248 -07 000000541 INF: FPGA: Recv ZSGSRD 35137
17-03-17 19:14:20.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:20.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:20.258 -07 000000618 INF: FPGA: Recv ZSGSRD 35140
17-03-17 19:14:20.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:20.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:20.268 -07 000000541 INF: FPGA: Recv ZSGSRD 35138
17-03-17 19:14:20.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:20.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:20.278 -07 000000618 INF: FPGA: Recv ZSGSRD 35148
17-03-17 19:14:20.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:20.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:20.288 -07 000000480 INF: FPGA: Recv ZSGSRD 35138
17-03-17 19:14:20.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:20.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:20.298 -07 000000618 INF: FPGA: Recv ZSGSRD 35139
17-03-17 19:14:20.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:20.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:20.308 -07 000000541 INF: FPGA: Recv ZSGSRD 35142
17-03-17 19:14:20.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:20.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:20.318 -07 000000608 INF: FPGA: Recv ZSGSRD 35138
17-03-17 19:14:20.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:20.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:20.328 -07 000000512 INF: FPGA: Recv ZPIEZORD 31023
17-03-17 19:14:20.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:20.338 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.535 V. Piezo Error = -9.1 V.
17-03-17 19:14:20.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35140 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35138 (-165.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35137 (-165.2 uncal um), Max = 35148 (-165.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:14:20.338 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35140, posNoise = 8, negNoise = 3
17-03-17 19:14:20.338 -07 000000610 INF: Z Motor: After move to -0.166061, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:20.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 19:14:20.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:20.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:20.338 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:20.338 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:20.338 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:14:20.338 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:20.338 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:14:20.338 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:14:20.338 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:14:20.338 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:14:20.338 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:14:20.338 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:14:20.348 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:14:20.348 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:14:20.348 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:14:20.348 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:14:20.358 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:14:20.358 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:14:20.358 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:14:20.358 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:14:20.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 36452 150\n [Camera]
17-03-17 19:14:20.558 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:14:20.958 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:14:20.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:14:20.958 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:20.958 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:20.958 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 19:14:20.958 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:14:20.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:14:20.958 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:20.958 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:20.958 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:14:21.148 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36452 784
17-03-17 19:14:21.308 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:14:21.338 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:14:21.338 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:14:21.338 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:14:21.338 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:21.338 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:14:21.338 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:21.348 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:14:21.348 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:14:21.348 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:14:21.358 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:14:21.488 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:14:21.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:14:21.488 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:21.488 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:21.488 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:14:21.498 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:14:21.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:14:21.498 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:21.498 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:21.498 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1063391280, 0x0, 418435064) start.
17-03-17 19:14:21.668 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:14:21.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:14:21.678 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:14:21.688 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:14:21.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 36452 150' command took 2 ms to send, 1320 ms to get response, and 1326 ms overall
17-03-17 19:14:21.888 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:14:21.888 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:14:21.888 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:21.888 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1063391280, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 19:14:21.888 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:14:21.888 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:21.888 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:21.888 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:14:21.888 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:14:21.898 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:21.898 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 19:14:21.938 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 19:14:21.938 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:14:21.978 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 19:14:21.978 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 19:14:21.978 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:14:21.978 -07 000000569 INF: FPGA: Recv EMCUR 
17-03-17 19:14:21.988 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:14:21.988 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 19:14:22.488 -07 000000618 INF: FPGA: Recv EMIN
17-03-17 19:14:22.488 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 1 ms to send, 495 ms to get response, and 504 ms overall
17-03-17 19:14:22.488 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 19:14:22.498 -07 000000608 INF: FPGA: Recv EMCUR 
17-03-17 19:14:22.498 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 19:14:22.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:14:22.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.166070166672615. ------
17-03-17 19:14:22.498 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:14:22.498 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14050 mm
17-03-17 19:14:22.498 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:14:22.508 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:14:22.508 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30692, sync = True, waitForSettling = False)
17-03-17 19:14:22.508 -07 000000431 INF: Z Motor: Moving to -0.140499 mm, started at -0.166070 mm, distance = 25.57 um
17-03-17 19:14:22.508 -07 000000431 INF: FPGA: Xmit ZDACW 30692\n [Z Motor]
17-03-17 19:14:22.508 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:14:22.508 -07 000000569 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-17 19:14:22.508 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:14:22.508 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:14:22.518 -07 000000431 INF: FPGA: 'ZDACW 30692' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:14:22.518 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:22.518 -07 000000561 INF: FPGA: Recv ZDACR 30692
17-03-17 19:14:22.528 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:22.528 -07 000000431 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-17 19:14:22.528 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:22.528 -07 000000502 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:14:22.538 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:14:22.538 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:14:22.538 -07 000000569 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:22.538 -07 000000569 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 19:14:22.538 -07 000000569 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:14:22.548 -07 000000569 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:14:22.738 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:14:22.738 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 230 ms overall
17-03-17 19:14:24.168 -07 000000618 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 19:14:24.168 -07 000000569 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1634 ms overall
17-03-17 19:14:24.168 -07 000000569 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:14:24.168 -07 000000569 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23873 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 19:14:24.168 -07 000000569 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1635 ms, distance = 14.919 mm, average velocity = 9.125 mm/sec
17-03-17 19:14:25.328 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.988112,
17-03-17 19:14:26.668 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:14:26.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:14:27.018 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:27.018 -07 000000512 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:14:27.028 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:27.028 -07 000000569 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:27.048 -07 000000569 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:14:27.048 -07 000000569 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 19:14:27.048 -07 000000569 INF: Y Motor: Moved to 59.9116 after 4546 ms
17-03-17 19:14:27.058 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140499 mm (DAC = 30692)
17-03-17 19:14:27.058 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:27.058 -07 000000512 INF: FPGA: Recv ZSGSRD 31158
17-03-17 19:14:27.068 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:14:27.068 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:27.068 -07 000000608 INF: FPGA: Recv ZSGSRD 31160
17-03-17 19:14:27.078 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:27.078 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:27.078 -07 000000623 INF: FPGA: Recv ZSGSRD 31160
17-03-17 19:14:27.088 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:27.088 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:27.088 -07 000000569 INF: FPGA: Recv ZSGSRD 31157
17-03-17 19:14:27.098 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:27.098 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:27.098 -07 000000623 INF: FPGA: Recv ZSGSRD 31160
17-03-17 19:14:27.108 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:27.108 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:27.108 -07 000000541 INF: FPGA: Recv ZSGSRD 31166
17-03-17 19:14:27.118 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:27.118 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:27.118 -07 000000431 INF: FPGA: Recv ZSGSRD 31161
17-03-17 19:14:27.128 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:27.128 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:27.128 -07 000000476 INF: FPGA: Recv ZSGSRD 31157
17-03-17 19:14:27.138 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:27.138 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:27.138 -07 000000431 INF: FPGA: Recv ZSGSRD 31162
17-03-17 19:14:27.148 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:27.148 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:27.148 -07 000000512 INF: FPGA: Recv ZSGSRD 31163
17-03-17 19:14:27.158 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:27.158 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:27.158 -07 000000541 INF: FPGA: Recv ZPIEZORD 26792
17-03-17 19:14:27.168 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:27.168 -07 000000480 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.683 V. Piezo Error = -9.6 V.
17-03-17 19:14:27.168 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.5 um, Read 10 ADC samples: Avg = 31160 (-139.7 uncal um), Error = 0.8 uncal um, Median = 31160 (-139.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 31157 (-139.7 uncal um), Max = 31166 (-139.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:14:27.168 -07 000000480 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31160, posNoise = 6, negNoise = 3
17-03-17 19:14:27.168 -07 000000480 INF: Z Motor: After move to -0.140499, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:27.168 -07 000000480 INF: Z Motor: Settle wait time = 4552 ms, measure time = 107 ms (allowed 150 ms), total time = 4659 ms
17-03-17 19:14:27.168 -07 000000480 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:14:27.218 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4711 ms
17-03-17 19:14:27.218 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:14:27.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:27.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:27.218 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:27.218 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:27.218 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:14:27.218 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:27.218 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:14:27.218 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:14:27.248 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 19:14:27.248 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:14:27.258 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:14:27.258 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:14:27.268 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:14:27.268 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 45 ms.
17-03-17 19:14:27.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:14:27.318 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:14:27.518 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:14:27.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:14:27.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:14:27.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460146392, 0x0, 559484976) start.
17-03-17 19:14:27.558 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:14:27.558 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 19:14:27.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 19:14:27.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460146392, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 19:14:27.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:27.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:14:27.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:14:27.658 -07 000000431 INF: Image SNR check: start
17-03-17 19:14:27.658 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:14:27.658 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:14:27.668 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:14:27.668 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:14:27.668 -07 000000431 INF: Image SNR check: pass  [peak (Max-Min)=66.27]
17-03-17 19:14:27.668 -07 000000431 INF: Autofocus start
17-03-17 19:14:27.668 -07 000000431 INF: MeasureProfile start
17-03-17 19:14:27.678 -07 000000431 INF: MeasureProfile done
17-03-17 19:14:27.688 -07 000000431 INF: X=22  Z correction [um]=0.08188023
17-03-17 19:14:27.688 -07 000000431 INF: Autofocus finished
17-03-17 19:14:27.868 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:14:27.868 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:14:27.868 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.140501802348406. ----------
17-03-17 19:14:27.868 -07 000000610 INF: Cycle	23	Tile	1	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:14:27.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29223, sync = True, waitForSettling = True)
17-03-17 19:14:27.878 -07 000000610 INF: Z Motor: Moving to -0.133774 mm, started at -0.140502 mm, distance = 6.73 um
17-03-17 19:14:27.878 -07 000000610 INF: FPGA: Xmit ZDACW 29223\n [Z Motor]
17-03-17 19:14:27.878 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:14:27.888 -07 000000610 INF: FPGA: 'ZDACW 29223' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:14:27.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:27.888 -07 000000476 INF: FPGA: Recv ZDACR 29223
17-03-17 19:14:27.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:27.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:14:28.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:28.048 -07 000000480 INF: FPGA: Recv ZSGSRD 30112
17-03-17 19:14:28.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:28.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:28.058 -07 000000476 INF: FPGA: Recv ZSGSRD 30113
17-03-17 19:14:28.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:28.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:28.068 -07 000000476 INF: FPGA: Recv ZSGSRD 30113
17-03-17 19:14:28.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:28.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:28.078 -07 000000541 INF: FPGA: Recv ZSGSRD 30114
17-03-17 19:14:28.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:28.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:28.088 -07 000000512 INF: FPGA: Recv ZSGSRD 30106
17-03-17 19:14:28.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:28.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:28.098 -07 000000541 INF: FPGA: Recv ZSGSRD 30114
17-03-17 19:14:28.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:28.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:28.108 -07 000000431 INF: FPGA: Recv ZSGSRD 30111
17-03-17 19:14:28.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:28.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:28.118 -07 000000623 INF: FPGA: Recv ZSGSRD 30113
17-03-17 19:14:28.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:28.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:28.128 -07 000000512 INF: FPGA: Recv ZSGSRD 30113
17-03-17 19:14:28.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:28.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:28.138 -07 000000541 INF: FPGA: Recv ZSGSRD 30113
17-03-17 19:14:28.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:28.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:28.148 -07 000000431 INF: FPGA: Recv ZPIEZORD 25672
17-03-17 19:14:28.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:28.158 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.459 V. Piezo Error = -9.7 V.
17-03-17 19:14:28.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.8 um, Read 10 ADC samples: Avg = 30112 (-133.0 uncal um), Error = 0.8 uncal um, Median = 30113 (-133.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30106 (-132.9 uncal um), Max = 30114 (-133.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:14:28.158 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30112, posNoise = 2, negNoise = 6
17-03-17 19:14:28.158 -07 000000610 INF: Z Motor: After move to -0.133774, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:28.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:14:28.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:28.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:28.158 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:28.158 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:28.158 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:14:28.158 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:28.158 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:14:28.158 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:14:28.158 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:14:28.158 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:14:28.158 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:14:28.158 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:14:28.158 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:14:28.158 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:14:28.168 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:14:28.168 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 11 ms.
17-03-17 19:14:28.178 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 19:14:28.178 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:14:28.188 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:14:28.188 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:14:28.188 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:14:28.188 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 19:14:28.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 29399 150\n [Camera]
17-03-17 19:14:28.398 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:14:28.798 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:14:28.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:14:28.798 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:28.798 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:28.798 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1098813544, 0x0, 391868352) start.
17-03-17 19:14:28.798 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:14:28.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:14:28.918 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:28.918 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:28.918 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:14:28.988 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29399 784
17-03-17 19:14:29.138 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:14:29.178 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1098813544, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:14:29.178 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:14:29.178 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:29.178 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:29.178 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:14:29.288 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:14:29.288 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:14:29.288 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:29.298 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:29.298 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:14:29.328 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:14:29.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:14:29.328 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:29.328 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:14:29.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:14:29.328 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:29.338 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:29.338 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:14:29.338 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:29.338 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:14:29.518 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:14:29.518 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:14:29.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 29399 150' command took 2 ms to send, 1317 ms to get response, and 1325 ms overall
17-03-17 19:14:29.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:14:29.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.133769228023841. ------
17-03-17 19:14:29.528 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:14:29.528 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14023 mm
17-03-17 19:14:29.528 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:14:29.528 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:14:29.528 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:14:29.528 -07 000000502 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 19:14:29.528 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 30634, sync = True, waitForSettling = False)
17-03-17 19:14:29.528 -07 000000561 INF: Z Motor: Moving to -0.140233 mm, started at -0.133769 mm, distance = -6.46 um
17-03-17 19:14:29.538 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:14:29.538 -07 000000561 INF: FPGA: Xmit ZDACW 30634\n [Z Motor]
17-03-17 19:14:29.538 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:14:29.548 -07 000000561 INF: FPGA: 'ZDACW 30634' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:14:29.548 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:29.548 -07 000000623 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:14:29.558 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:14:29.558 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:14:29.558 -07 000000502 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:29.558 -07 000000502 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:14:29.558 -07 000000502 INF: Y Motor: Moving 1330 steps2
17-03-17 19:14:29.568 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:29.568 -07 000000547 INF: FPGA: Recv ZDACR 30634
17-03-17 19:14:29.578 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:14:29.578 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:14:29.578 -07 000000561 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 19:14:29.728 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:14:29.728 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:14:29.728 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:29.728 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:14:29.728 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:14:29.728 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:29.728 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:29.728 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:14:29.728 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:29.738 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:14:29.758 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:14:29.758 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:14:29.948 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:14:29.948 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:14:29.978 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:29.978 -07 000000547 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:14:29.988 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:14:29.988 -07 000000502 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:29.988 -07 000000502 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:14:29.988 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.093 mm/sec
17-03-17 19:14:30.688 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.983999,
17-03-17 19:14:30.938 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:30.938 -07 000000512 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:14:30.948 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:30.948 -07 000000502 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:30.968 -07 000000502 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:14:30.968 -07 000000502 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:14:30.968 -07 000000502 INF: Y Motor: Moved to 60.7339 after 1432 ms (table move)
17-03-17 19:14:30.968 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140233 mm (DAC = 30634)
17-03-17 19:14:30.968 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:30.968 -07 000000429 INF: FPGA: Recv ZSGSRD 31120
17-03-17 19:14:30.978 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:14:30.978 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:30.978 -07 000000512 INF: FPGA: Recv ZSGSRD 31119
17-03-17 19:14:30.988 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:30.988 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:30.988 -07 000000626 INF: FPGA: Recv ZSGSRD 31115
17-03-17 19:14:30.998 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:30.998 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:30.998 -07 000000502 INF: FPGA: Recv ZSGSRD 31111
17-03-17 19:14:31.008 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:31.008 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:31.008 -07 000000476 INF: FPGA: Recv ZSGSRD 31124
17-03-17 19:14:31.018 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:31.018 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:31.018 -07 000000431 INF: FPGA: Recv ZSGSRD 31121
17-03-17 19:14:31.028 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:31.028 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:31.028 -07 000000626 INF: FPGA: Recv ZSGSRD 31123
17-03-17 19:14:31.038 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:31.038 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:31.038 -07 000000502 INF: FPGA: Recv ZSGSRD 31120
17-03-17 19:14:31.048 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:31.048 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:31.048 -07 000000569 INF: FPGA: Recv ZSGSRD 31114
17-03-17 19:14:31.058 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:31.058 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:31.058 -07 000000482 INF: FPGA: Recv ZSGSRD 31120
17-03-17 19:14:31.068 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:31.068 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:31.068 -07 000000561 INF: FPGA: Recv ZPIEZORD 27037
17-03-17 19:14:31.078 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:31.078 -07 000000480 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.674 V. Piezo Error = -9.0 V.
17-03-17 19:14:31.078 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.2 um, Read 10 ADC samples: Avg = 31119 (-139.4 uncal um), Error = 0.8 uncal um, Median = 31120 (-139.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 31111 (-139.4 uncal um), Max = 31124 (-139.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:14:31.078 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31119, posNoise = 5, negNoise = 8
17-03-17 19:14:31.078 -07 000000480 INF: Z Motor: After move to -0.140233, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:31.078 -07 000000480 INF: Z Motor: Settle wait time = 1436 ms, measure time = 105 ms (allowed 150 ms), total time = 1541 ms
17-03-17 19:14:31.078 -07 000000480 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:14:31.128 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 19:14:31.128 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:14:31.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:31.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:31.138 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:31.138 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:31.138 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:14:31.138 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:31.138 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:14:31.138 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:14:31.138 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:14:31.138 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:14:31.148 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 19:14:31.148 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:14:31.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:14:31.198 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:14:31.388 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:14:31.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:14:31.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:14:31.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460015264, 0x0, 559484976) start.
17-03-17 19:14:31.428 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:14:31.438 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 19:14:31.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 19:14:31.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460015264, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:14:31.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:31.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:14:31.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:14:31.648 -07 000000608 INF: Autofocus start
17-03-17 19:14:31.648 -07 000000608 INF: MeasureProfile start
17-03-17 19:14:31.648 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:14:31.648 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:14:31.658 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:31.658 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:14:31.658 -07 000000608 INF: MeasureProfile done
17-03-17 19:14:31.658 -07 000000608 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:14:31.658 -07 000000608 INF: Autofocus finished
17-03-17 19:14:31.668 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:14:31.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:14:31.858 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:14:31.858 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:14:31.858 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.140238409650594. ----------
17-03-17 19:14:31.858 -07 000000610 INF: Cycle	23	Tile	2	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:14:31.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29128, sync = True, waitForSettling = True)
17-03-17 19:14:31.868 -07 000000610 INF: Z Motor: Moving to -0.133339 mm, started at -0.140238 mm, distance = 6.90 um
17-03-17 19:14:31.868 -07 000000610 INF: FPGA: Xmit ZDACW 29128\n [Z Motor]
17-03-17 19:14:31.868 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:14:31.878 -07 000000610 INF: FPGA: 'ZDACW 29128' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:14:31.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:31.878 -07 000000429 INF: FPGA: Recv ZDACR 29128
17-03-17 19:14:31.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:31.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:14:32.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:32.038 -07 000000431 INF: FPGA: Recv ZSGSRD 30047
17-03-17 19:14:32.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:32.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:32.048 -07 000000623 INF: FPGA: Recv ZSGSRD 30045
17-03-17 19:14:32.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:32.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:32.058 -07 000000608 INF: FPGA: Recv ZSGSRD 30043
17-03-17 19:14:32.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:32.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:32.068 -07 000000476 INF: FPGA: Recv ZSGSRD 30044
17-03-17 19:14:32.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:32.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:32.078 -07 000000608 INF: FPGA: Recv ZSGSRD 30049
17-03-17 19:14:32.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:32.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:32.088 -07 000000623 INF: FPGA: Recv ZSGSRD 30047
17-03-17 19:14:32.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:32.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:32.098 -07 000000608 INF: FPGA: Recv ZSGSRD 30046
17-03-17 19:14:32.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:32.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:32.108 -07 000000429 INF: FPGA: Recv ZSGSRD 30050
17-03-17 19:14:32.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:32.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:32.118 -07 000000478 INF: FPGA: Recv ZSGSRD 30047
17-03-17 19:14:32.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:32.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:32.128 -07 000000618 INF: FPGA: Recv ZSGSRD 30045
17-03-17 19:14:32.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:32.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:32.138 -07 000000608 INF: FPGA: Recv ZPIEZORD 25654
17-03-17 19:14:32.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:32.148 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.445 V. Piezo Error = -9.6 V.
17-03-17 19:14:32.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30046 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30046 (-132.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30043 (-132.5 uncal um), Max = 30050 (-132.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:14:32.148 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30046, posNoise = 4, negNoise = 3
17-03-17 19:14:32.148 -07 000000610 INF: Z Motor: After move to -0.133339, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:32.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:14:32.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:32.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:32.148 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:32.148 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:32.148 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:14:32.148 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:32.148 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:14:32.148 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:14:32.148 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:14:32.148 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:14:32.148 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:14:32.148 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:14:32.158 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:14:32.158 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:14:32.158 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:14:32.158 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:14:32.168 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:14:32.168 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:14:32.168 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:14:32.168 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:14:32.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 29305 150\n [Camera]
17-03-17 19:14:32.368 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:14:32.768 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:14:32.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:14:32.768 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:32.768 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:14:32.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:14:32.768 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:32.768 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:32.768 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) start.
17-03-17 19:14:32.778 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:32.778 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:14:32.958 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29305 784
17-03-17 19:14:33.108 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:14:33.168 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:14:33.168 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:14:33.168 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:33.168 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:14:33.168 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:14:33.168 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:33.178 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:33.178 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:14:33.178 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:33.178 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:14:33.298 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:14:33.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:14:33.298 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:33.308 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:14:33.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:14:33.308 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:33.308 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:33.308 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:14:33.308 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:33.308 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:14:33.488 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-17 19:14:33.498 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:14:33.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 29305 150' command took 2 ms to send, 1319 ms to get response, and 1327 ms overall
17-03-17 19:14:33.498 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.134051
17-03-17 19:14:33.498 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13405 mm
17-03-17 19:14:33.498 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:14:33.498 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:14:33.498 -07 000000541 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 19:14:33.498 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:33.498 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29283, sync = True, waitForSettling = False)
17-03-17 19:14:33.498 -07 000000478 INF: Z Motor: Moving to -0.134049 mm, started at -0.133345 mm, distance = -0.70 um
17-03-17 19:14:33.508 -07 000000478 INF: FPGA: Xmit ZDACW 29283\n [Z Motor]
17-03-17 19:14:33.508 -07 000000476 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:14:33.508 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:14:33.508 -07 000000541 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:33.508 -07 000000541 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:14:33.508 -07 000000541 INF: Y Motor: Moving 1342 steps-19
17-03-17 19:14:33.508 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:14:33.518 -07 000000478 INF: FPGA: 'ZDACW 29283' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:14:33.518 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:33.518 -07 000000512 INF: FPGA: Recv ZDACR 29283
17-03-17 19:14:33.528 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:14:33.528 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:33.528 -07 000000478 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 19:14:33.708 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:14:33.708 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:14:33.708 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:33.708 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 406 ms.
17-03-17 19:14:33.708 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 19:14:33.708 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:33.718 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:33.718 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:14:33.718 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 19:14:33.728 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 19:14:33.898 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 19:14:33.898 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:14:33.938 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:33.938 -07 000000569 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:14:33.948 -07 000000541 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:33.948 -07 000000541 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:33.948 -07 000000541 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:14:33.948 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.123 mm/sec
17-03-17 19:14:34.898 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:34.898 -07 000000626 INF: FPGA: Recv YRDPOS 126085
17-03-17 19:14:34.908 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:34.908 -07 000000541 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:34.928 -07 000000541 INF: Y Motor: After move to 61.572609, error = -0.007668, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:14:34.928 -07 000000541 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:14:34.928 -07 000000541 INF: Y Motor: Moved to 61.5649 after 1426 ms (table move)
17-03-17 19:14:34.928 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134049 mm (DAC = 29283)
17-03-17 19:14:34.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:34.928 -07 000000608 INF: FPGA: Recv ZSGSRD 30164
17-03-17 19:14:34.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:14:34.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:34.938 -07 000000541 INF: FPGA: Recv ZSGSRD 30147
17-03-17 19:14:34.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:34.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:34.948 -07 000000608 INF: FPGA: Recv ZSGSRD 30154
17-03-17 19:14:34.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:34.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:34.958 -07 000000547 INF: FPGA: Recv ZSGSRD 30156
17-03-17 19:14:34.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:34.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:34.968 -07 000000608 INF: FPGA: Recv ZSGSRD 30161
17-03-17 19:14:34.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:34.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:34.978 -07 000000541 INF: FPGA: Recv ZSGSRD 30160
17-03-17 19:14:34.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:34.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:34.988 -07 000000478 INF: FPGA: Recv ZSGSRD 30168
17-03-17 19:14:34.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:14:34.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:34.998 -07 000000512 INF: FPGA: Recv ZSGSRD 30157
17-03-17 19:14:35.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:35.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:35.008 -07 000000478 INF: FPGA: Recv ZSGSRD 30147
17-03-17 19:14:35.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:35.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:35.018 -07 000000626 INF: FPGA: Recv ZSGSRD 30154
17-03-17 19:14:35.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:35.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:35.028 -07 000000478 INF: FPGA: Recv ZPIEZORD 25786
17-03-17 19:14:35.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:35.038 -07 000000610 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.468 V. Piezo Error = -9.6 V.
17-03-17 19:14:35.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.0 um, Read 10 ADC samples: Avg = 30157 (-133.3 uncal um), Error = 0.8 uncal um, Median = 30156 (-133.3 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30147 (-133.2 uncal um), Max = 30168 (-133.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:14:35.038 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30157, posNoise = 11, negNoise = 10
17-03-17 19:14:35.038 -07 000000610 INF: Z Motor: After move to -0.134049, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:35.038 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 107 ms (allowed 150 ms), total time = 1535 ms
17-03-17 19:14:35.038 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:14:35.088 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 19:14:35.088 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:14:35.088 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56494140625, Z-position -0.13405831757022. ----------
17-03-17 19:14:35.088 -07 000000610 INF: Cycle	23	Tile	3	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:14:35.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29107, sync = True, waitForSettling = True)
17-03-17 19:14:35.088 -07 000000610 INF: Z Motor: Moving to -0.133243 mm, started at -0.134058 mm, distance = 0.82 um
17-03-17 19:14:35.088 -07 000000610 INF: FPGA: Xmit ZDACW 29107\n [Z Motor]
17-03-17 19:14:35.088 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 19:14:35.098 -07 000000610 INF: FPGA: 'ZDACW 29107' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:14:35.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:35.098 -07 000000541 INF: FPGA: Recv ZDACR 29107
17-03-17 19:14:35.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:35.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:14:35.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:35.258 -07 000000547 INF: FPGA: Recv ZSGSRD 30033
17-03-17 19:14:35.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:35.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:35.268 -07 000000541 INF: FPGA: Recv ZSGSRD 30032
17-03-17 19:14:35.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:35.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:35.278 -07 000000547 INF: FPGA: Recv ZSGSRD 30031
17-03-17 19:14:35.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:35.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:35.288 -07 000000541 INF: FPGA: Recv ZSGSRD 30032
17-03-17 19:14:35.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:35.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:35.298 -07 000000547 INF: FPGA: Recv ZSGSRD 30030
17-03-17 19:14:35.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:35.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:35.308 -07 000000476 INF: FPGA: Recv ZSGSRD 30028
17-03-17 19:14:35.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:35.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:35.318 -07 000000429 INF: FPGA: Recv ZSGSRD 30032
17-03-17 19:14:35.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:35.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:35.328 -07 000000476 INF: FPGA: Recv ZSGSRD 30024
17-03-17 19:14:35.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:35.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:35.338 -07 000000618 INF: FPGA: Recv ZSGSRD 30030
17-03-17 19:14:35.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:35.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:35.348 -07 000000476 INF: FPGA: Recv ZSGSRD 30034
17-03-17 19:14:35.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:35.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:35.358 -07 000000623 INF: FPGA: Recv ZPIEZORD 25631
17-03-17 19:14:35.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:14:35.368 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.7 V.
17-03-17 19:14:35.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30031 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30032 (-132.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30024 (-132.4 uncal um), Max = 30034 (-132.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:14:35.368 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30031, posNoise = 3, negNoise = 7
17-03-17 19:14:35.368 -07 000000610 INF: Z Motor: After move to -0.133243, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:35.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:14:35.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:35.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:35.368 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:35.368 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:35.368 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:14:35.368 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:35.368 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:14:35.368 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:14:35.368 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:14:35.368 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:14:35.368 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:14:35.368 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:14:35.378 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:14:35.378 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:14:35.378 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:14:35.378 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:14:35.388 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:14:35.388 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:14:35.388 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:14:35.388 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:14:35.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 29283 150\n [Camera]
17-03-17 19:14:35.598 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:14:35.998 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:14:35.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:14:35.998 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:35.998 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:35.998 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 19:14:35.998 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:14:35.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:14:35.998 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:36.108 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:36.108 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:14:36.118 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.018051,
17-03-17 19:14:36.188 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29283 784
17-03-17 19:14:36.338 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:14:36.368 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 19:14:36.368 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 19:14:36.368 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:36.378 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:36.378 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:14:36.488 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:14:36.488 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:14:36.488 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:36.488 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:36.498 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 493 ms.
17-03-17 19:14:36.528 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:14:36.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:14:36.528 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:36.528 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:14:36.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:14:36.528 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:36.538 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:36.538 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:14:36.538 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:36.538 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:14:36.668 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:14:36.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:14:36.718 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:14:36.718 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:14:36.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 29283 150' command took 2 ms to send, 1316 ms to get response, and 1325 ms overall
17-03-17 19:14:36.718 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.133632
17-03-17 19:14:36.718 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13363 mm
17-03-17 19:14:36.718 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:14:36.728 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:14:36.728 -07 000000623 INF: Y Motor: Moving to 62.4026 mm, started at 61.5649 mm, delta = 0.8377 mm
17-03-17 19:14:36.728 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:36.728 -07 000000547 INF: FPGA: Recv YRDPOS 126085
17-03-17 19:14:36.728 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29192, sync = True, waitForSettling = False)
17-03-17 19:14:36.728 -07 000000541 INF: Z Motor: Moving to -0.133632 mm, started at -0.133249 mm, distance = -0.38 um
17-03-17 19:14:36.738 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:14:36.738 -07 000000541 INF: FPGA: Xmit ZDACW 29192\n [Z Motor]
17-03-17 19:14:36.738 -07 000000623 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:36.738 -07 000000623 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:14:36.738 -07 000000623 INF: Y Motor: Moving 1340 steps-17
17-03-17 19:14:36.738 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:14:36.748 -07 000000541 INF: FPGA: 'ZDACW 29192' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:14:36.748 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:14:36.758 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:36.758 -07 000000547 INF: FPGA: Recv ZDACR 29192
17-03-17 19:14:36.768 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:14:36.768 -07 000000541 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 19:14:36.928 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 19:14:36.928 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:14:36.928 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:36.928 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:14:36.928 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:14:36.928 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:36.928 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:14:36.928 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:36.928 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:14:36.938 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:14:37.118 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:14:37.118 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:14:37.158 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:37.158 -07 000000608 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:14:37.168 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:14:37.168 -07 000000623 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:37.168 -07 000000623 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:14:37.168 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.165 mm/sec
17-03-17 19:14:38.118 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:38.118 -07 000000608 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:14:38.128 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:38.128 -07 000000623 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:38.138 -07 000000623 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:14:38.138 -07 000000623 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:14:38.138 -07 000000623 INF: Y Motor: Moved to 62.3960 after 1417 ms (table move)
17-03-17 19:14:38.148 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133632 mm (DAC = 29192)
17-03-17 19:14:38.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.148 -07 000000547 INF: FPGA: Recv ZSGSRD 30082
17-03-17 19:14:38.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:14:38.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.158 -07 000000618 INF: FPGA: Recv ZSGSRD 30087
17-03-17 19:14:38.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.168 -07 000000541 INF: FPGA: Recv ZSGSRD 30097
17-03-17 19:14:38.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.178 -07 000000608 INF: FPGA: Recv ZSGSRD 30097
17-03-17 19:14:38.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.188 -07 000000541 INF: FPGA: Recv ZSGSRD 30092
17-03-17 19:14:38.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.198 -07 000000618 INF: FPGA: Recv ZSGSRD 30089
17-03-17 19:14:38.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.208 -07 000000547 INF: FPGA: Recv ZSGSRD 30091
17-03-17 19:14:38.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.218 -07 000000547 INF: FPGA: Recv ZSGSRD 30089
17-03-17 19:14:38.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:14:38.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.228 -07 000000618 INF: FPGA: Recv ZSGSRD 30084
17-03-17 19:14:38.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.238 -07 000000547 INF: FPGA: Recv ZSGSRD 30094
17-03-17 19:14:38.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:38.248 -07 000000541 INF: FPGA: Recv ZPIEZORD 25774
17-03-17 19:14:38.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.258 -07 000000610 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.454 V. Piezo Error = -9.5 V.
17-03-17 19:14:38.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30090 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30090 (-132.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30082 (-132.8 uncal um), Max = 30097 (-132.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:14:38.258 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30090, posNoise = 7, negNoise = 8
17-03-17 19:14:38.258 -07 000000610 INF: Z Motor: After move to -0.133632, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:38.258 -07 000000610 INF: Z Motor: Settle wait time = 1415 ms, measure time = 109 ms (allowed 150 ms), total time = 1524 ms
17-03-17 19:14:38.258 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 19:14:38.308 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 19:14:38.308 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:14:38.308 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.133627895356722. ----------
17-03-17 19:14:38.308 -07 000000610 INF: Cycle	23	Tile	4	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:14:38.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29015, sync = True, waitForSettling = True)
17-03-17 19:14:38.308 -07 000000610 INF: Z Motor: Moving to -0.132822 mm, started at -0.133628 mm, distance = 0.81 um
17-03-17 19:14:38.308 -07 000000610 INF: FPGA: Xmit ZDACW 29015\n [Z Motor]
17-03-17 19:14:38.308 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:14:38.318 -07 000000610 INF: FPGA: 'ZDACW 29015' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:14:38.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:38.318 -07 000000547 INF: FPGA: Recv ZDACR 29015
17-03-17 19:14:38.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:14:38.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.478 -07 000000541 INF: FPGA: Recv ZSGSRD 29964
17-03-17 19:14:38.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:38.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.488 -07 000000623 INF: FPGA: Recv ZSGSRD 29975
17-03-17 19:14:38.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.498 -07 000000541 INF: FPGA: Recv ZSGSRD 29961
17-03-17 19:14:38.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.508 -07 000000623 INF: FPGA: Recv ZSGSRD 29963
17-03-17 19:14:38.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.518 -07 000000547 INF: FPGA: Recv ZSGSRD 29963
17-03-17 19:14:38.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.528 -07 000000623 INF: FPGA: Recv ZSGSRD 29965
17-03-17 19:14:38.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.538 -07 000000547 INF: FPGA: Recv ZSGSRD 29967
17-03-17 19:14:38.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.548 -07 000000623 INF: FPGA: Recv ZSGSRD 29965
17-03-17 19:14:38.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.558 -07 000000547 INF: FPGA: Recv ZSGSRD 29971
17-03-17 19:14:38.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:38.568 -07 000000618 INF: FPGA: Recv ZSGSRD 29970
17-03-17 19:14:38.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:38.578 -07 000000547 INF: FPGA: Recv ZPIEZORD 25603
17-03-17 19:14:38.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:38.588 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.427 V. Piezo Error = -9.6 V.
17-03-17 19:14:38.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29966 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29965 (-132.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29961 (-132.0 uncal um), Max = 29975 (-132.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:14:38.588 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29966, posNoise = 9, negNoise = 5
17-03-17 19:14:38.588 -07 000000610 INF: Z Motor: After move to -0.132822, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:38.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:14:38.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:38.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:38.588 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:38.588 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:38.588 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:14:38.588 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:38.588 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:14:38.588 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:14:38.588 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:14:38.588 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:14:38.588 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:14:38.588 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:14:38.598 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:14:38.598 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:14:38.598 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:14:38.598 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:14:38.608 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:14:38.608 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:14:38.608 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:14:38.608 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:14:38.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 29192 150\n [Camera]
17-03-17 19:14:38.808 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:14:39.208 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:14:39.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:14:39.208 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:39.208 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:39.208 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 19:14:39.218 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:14:39.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:14:39.218 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:39.218 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:39.218 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 19:14:39.408 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29192 784
17-03-17 19:14:39.558 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:14:39.608 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:14:39.608 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:14:39.608 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:39.618 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:14:39.618 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:14:39.618 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:39.618 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:39.618 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:14:39.618 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:39.628 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:14:39.748 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:14:39.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:14:39.748 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:39.748 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:39.748 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1069092912, 0x0, 391868352) start.
17-03-17 19:14:39.748 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:14:39.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:14:39.748 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:39.748 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:39.748 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1104515176, 0x0, 418435064) start.
17-03-17 19:14:39.938 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:14:39.938 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:14:39.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 29192 150' command took 2 ms to send, 1315 ms to get response, and 1325 ms overall
17-03-17 19:14:39.938 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.133572
17-03-17 19:14:39.938 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13357 mm
17-03-17 19:14:39.938 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:14:39.948 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:14:39.948 -07 000000541 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 19:14:39.948 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29179, sync = True, waitForSettling = False)
17-03-17 19:14:39.948 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:39.948 -07 000000608 INF: Z Motor: Moving to -0.133573 mm, started at -0.132831 mm, distance = -0.74 um
17-03-17 19:14:39.948 -07 000000480 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:14:39.958 -07 000000541 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:39.958 -07 000000541 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:39.958 -07 000000541 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:14:39.958 -07 000000608 INF: FPGA: Xmit ZDACW 29179\n [Z Motor]
17-03-17 19:14:39.958 -07 000000541 INF: Y Motor: Moving 1339 steps-14
17-03-17 19:14:39.958 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:14:39.968 -07 000000608 INF: FPGA: 'ZDACW 29179' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:14:39.968 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:39.968 -07 000000551 INF: FPGA: Recv ZDACR 29179
17-03-17 19:14:39.978 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:14:39.978 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:39.978 -07 000000608 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 19:14:40.128 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1069092912, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:14:40.128 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:14:40.128 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:40.128 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1104515176, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:14:40.128 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:14:40.128 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:40.128 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:40.128 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:14:40.138 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:40.138 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:14:40.348 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:14:40.348 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:14:40.388 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:40.398 -07 000000608 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:14:40.398 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:14:40.398 -07 000000541 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:40.398 -07 000000541 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:14:40.398 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.107 mm/sec
17-03-17 19:14:41.348 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:41.348 -07 000000012 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:14:41.358 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:41.358 -07 000000541 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:41.378 -07 000000541 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:14:41.378 -07 000000541 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:14:41.378 -07 000000541 INF: Y Motor: Moved to 63.2251 after 1433 ms (table move)
17-03-17 19:14:41.378 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133573 mm (DAC = 29179)
17-03-17 19:14:41.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.378 -07 000000541 INF: FPGA: Recv ZSGSRD 30080
17-03-17 19:14:41.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:14:41.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.388 -07 000000480 INF: FPGA: Recv ZSGSRD 30075
17-03-17 19:14:41.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:41.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.398 -07 000000480 INF: FPGA: Recv ZSGSRD 30079
17-03-17 19:14:41.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:41.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.408 -07 000000480 INF: FPGA: Recv ZSGSRD 30082
17-03-17 19:14:41.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:41.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.418 -07 000000547 INF: FPGA: Recv ZSGSRD 30082
17-03-17 19:14:41.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:14:41.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.428 -07 000000547 INF: FPGA: Recv ZSGSRD 30088
17-03-17 19:14:41.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:41.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.438 -07 000000429 INF: FPGA: Recv ZSGSRD 30083
17-03-17 19:14:41.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:41.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.448 -07 000000547 INF: FPGA: Recv ZSGSRD 30084
17-03-17 19:14:41.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:41.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.458 -07 000000547 INF: FPGA: Recv ZSGSRD 30077
17-03-17 19:14:41.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:41.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.478 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.989471,
17-03-17 19:14:41.478 -07 000000551 INF: FPGA: Recv ZSGSRD 30085
17-03-17 19:14:41.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:14:41.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:41.498 -07 000000547 INF: FPGA: Recv ZPIEZORD 25784
17-03-17 19:14:41.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:14:41.508 -07 000000610 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.452 V. Piezo Error = -9.4 V.
17-03-17 19:14:41.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30082 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30082 (-132.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30075 (-132.7 uncal um), Max = 30088 (-132.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:14:41.508 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30082, posNoise = 6, negNoise = 7
17-03-17 19:14:41.508 -07 000000610 INF: Z Motor: After move to -0.133573, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:41.508 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 124 ms (allowed 150 ms), total time = 1556 ms
17-03-17 19:14:41.508 -07 000000610 INF: Z Motor: Waiting extra 26 ms after reading position to reach expected total of 150 ms
17-03-17 19:14:41.538 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 19:14:41.538 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:14:41.538 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.133576501659588. ----------
17-03-17 19:14:41.538 -07 000000610 INF: Cycle	23	Tile	5	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:14:41.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29002, sync = True, waitForSettling = True)
17-03-17 19:14:41.538 -07 000000610 INF: Z Motor: Moving to -0.132763 mm, started at -0.133577 mm, distance = 0.81 um
17-03-17 19:14:41.538 -07 000000610 INF: FPGA: Xmit ZDACW 29002\n [Z Motor]
17-03-17 19:14:41.538 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:14:41.548 -07 000000610 INF: FPGA: 'ZDACW 29002' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:14:41.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:41.548 -07 000000012 INF: FPGA: Recv ZDACR 29002
17-03-17 19:14:41.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:41.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:14:41.668 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:14:41.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:14:41.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.708 -07 000000012 INF: FPGA: Recv ZSGSRD 29955
17-03-17 19:14:41.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:41.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.718 -07 000000623 INF: FPGA: Recv ZSGSRD 29961
17-03-17 19:14:41.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:41.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.728 -07 000000502 INF: FPGA: Recv ZSGSRD 29957
17-03-17 19:14:41.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:41.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.738 -07 000000551 INF: FPGA: Recv ZSGSRD 29961
17-03-17 19:14:41.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:41.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.748 -07 000000012 INF: FPGA: Recv ZSGSRD 29957
17-03-17 19:14:41.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:41.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.758 -07 000000623 INF: FPGA: Recv ZSGSRD 29949
17-03-17 19:14:41.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:41.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.768 -07 000000502 INF: FPGA: Recv ZSGSRD 29956
17-03-17 19:14:41.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:41.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.778 -07 000000502 INF: FPGA: Recv ZSGSRD 29949
17-03-17 19:14:41.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:41.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.788 -07 000000012 INF: FPGA: Recv ZSGSRD 29954
17-03-17 19:14:41.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:41.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:41.798 -07 000000551 INF: FPGA: Recv ZSGSRD 29957
17-03-17 19:14:41.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:41.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:41.808 -07 000000623 INF: FPGA: Recv ZPIEZORD 25621
17-03-17 19:14:41.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:41.818 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.425 V. Piezo Error = -9.5 V.
17-03-17 19:14:41.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29956 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29956 (-132.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29949 (-131.9 uncal um), Max = 29961 (-132.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:14:41.818 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29956, posNoise = 5, negNoise = 7
17-03-17 19:14:41.818 -07 000000610 INF: Z Motor: After move to -0.132763, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:41.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:14:41.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:41.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:41.818 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:41.818 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:14:41.818 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:14:41.818 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:14:41.818 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:41.818 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:41.818 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:14:41.818 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:14:41.818 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:14:41.818 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:14:41.828 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:14:41.828 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:14:41.828 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:14:41.828 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:14:41.838 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:14:41.838 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:14:41.838 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:14:41.838 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:14:41.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 29179 150\n [Camera]
17-03-17 19:14:42.048 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:14:42.438 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:14:42.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:14:42.448 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:42.448 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:42.448 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1139937440, 0x0, 391868352) start.
17-03-17 19:14:42.448 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:14:42.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:14:42.448 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:42.448 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:42.448 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:14:42.638 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29179 784
17-03-17 19:14:42.788 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:14:42.818 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:14:42.818 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:14:42.818 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:42.818 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1139937440, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:14:42.818 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:14:42.818 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:42.828 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:42.828 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:42.828 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:14:42.828 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:14:42.978 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:14:42.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:14:42.978 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:43.098 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:14:43.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:14:43.098 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:43.098 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:43.098 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:14:43.108 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:43.108 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:14:43.168 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:14:43.168 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:14:43.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 29179 150' command took 2 ms to send, 1316 ms to get response, and 1325 ms overall
17-03-17 19:14:43.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:14:43.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.132767050929726. ------
17-03-17 19:14:43.178 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:14:43.178 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13928 mm
17-03-17 19:14:43.178 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:14:43.178 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:14:43.178 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:14:43.178 -07 000000478 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 19:14:43.178 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 30425, sync = True, waitForSettling = False)
17-03-17 19:14:43.178 -07 000000561 INF: Z Motor: Moving to -0.139277 mm, started at -0.132767 mm, distance = -6.51 um
17-03-17 19:14:43.188 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:14:43.188 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:43.188 -07 000000431 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:14:43.198 -07 000000561 INF: FPGA: Xmit ZDACW 30425\n [Z Motor]
17-03-17 19:14:43.198 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:14:43.198 -07 000000478 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:43.198 -07 000000478 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:14:43.198 -07 000000478 INF: Y Motor: Moving 1340 steps-15
17-03-17 19:14:43.198 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:14:43.208 -07 000000561 INF: FPGA: 'ZDACW 30425' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:14:43.208 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:14:43.218 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:14:43.228 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:43.228 -07 000000431 INF: FPGA: Recv ZDACR 30425
17-03-17 19:14:43.238 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:14:43.238 -07 000000561 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 19:14:43.408 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:14:43.408 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:14:43.478 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:14:43.478 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:14:43.478 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:43.478 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 19:14:43.478 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 19:14:43.478 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:43.478 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:43.478 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:43.478 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 19:14:43.488 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:14:43.598 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:14:43.598 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 397 ms overall
17-03-17 19:14:43.628 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:43.628 -07 000000623 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:14:43.638 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:14:43.638 -07 000000478 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:43.638 -07 000000478 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 19:14:43.638 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.104 mm/sec
17-03-17 19:14:44.588 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:44.588 -07 000000618 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:14:44.598 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:44.598 -07 000000478 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:44.608 -07 000000478 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:14:44.608 -07 000000478 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:14:44.608 -07 000000478 INF: Y Motor: Moved to 64.0576 after 1430 ms (table move)
17-03-17 19:14:44.618 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139277 mm (DAC = 30425)
17-03-17 19:14:44.618 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:44.618 -07 000000512 INF: FPGA: Recv ZSGSRD 30968
17-03-17 19:14:44.628 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:44.628 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:44.628 -07 000000618 INF: FPGA: Recv ZSGSRD 30965
17-03-17 19:14:44.638 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:44.638 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:44.638 -07 000000482 INF: FPGA: Recv ZSGSRD 30974
17-03-17 19:14:44.648 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:44.648 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:44.648 -07 000000431 INF: FPGA: Recv ZSGSRD 30977
17-03-17 19:14:44.658 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:44.658 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:44.658 -07 000000561 INF: FPGA: Recv ZSGSRD 30974
17-03-17 19:14:44.668 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:44.668 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:44.668 -07 000000478 INF: FPGA: Recv ZSGSRD 30972
17-03-17 19:14:44.678 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:44.678 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:44.678 -07 000000482 INF: FPGA: Recv ZSGSRD 30975
17-03-17 19:14:44.688 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:44.688 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:44.688 -07 000000551 INF: FPGA: Recv ZSGSRD 30966
17-03-17 19:14:44.698 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:44.698 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:44.698 -07 000000551 INF: FPGA: Recv ZSGSRD 30966
17-03-17 19:14:44.708 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:44.708 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:44.708 -07 000000569 INF: FPGA: Recv ZSGSRD 30969
17-03-17 19:14:44.718 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:44.718 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:44.718 -07 000000561 INF: FPGA: Recv ZPIEZORD 26948
17-03-17 19:14:44.728 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:44.728 -07 000000502 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -8.9 V.
17-03-17 19:14:44.728 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30971 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30970 (-138.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30965 (-138.4 uncal um), Max = 30977 (-138.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:14:44.728 -07 000000502 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30971, posNoise = 6, negNoise = 6
17-03-17 19:14:44.728 -07 000000502 INF: Z Motor: After move to -0.139277, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:44.728 -07 000000502 INF: Z Motor: Settle wait time = 1432 ms, measure time = 111 ms (allowed 150 ms), total time = 1543 ms
17-03-17 19:14:44.728 -07 000000502 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 19:14:44.768 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 19:14:44.768 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:14:44.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:44.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:44.768 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:44.768 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:44.768 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:14:44.768 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:44.768 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:14:44.768 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:14:44.768 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:14:44.768 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:14:44.788 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-17 19:14:44.788 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:14:44.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:14:44.838 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:14:45.038 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:14:45.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:14:45.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:14:45.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610472208, 0x0, 559484976) start.
17-03-17 19:14:45.078 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:14:45.078 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 19:14:45.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 286 ms overall
17-03-17 19:14:45.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610472208, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:14:45.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:45.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:14:45.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:14:45.178 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:14:45.178 -07 000000551 INF: Autofocus start
17-03-17 19:14:45.178 -07 000000551 INF: MeasureProfile start
17-03-17 19:14:45.178 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:14:45.188 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:14:45.188 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:14:45.188 -07 000000551 INF: MeasureProfile done
17-03-17 19:14:45.188 -07 000000551 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:14:45.188 -07 000000551 INF: Autofocus finished
17-03-17 19:14:45.388 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:14:45.388 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:14:45.388 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.139287626253614. ----------
17-03-17 19:14:45.388 -07 000000610 INF: Cycle	23	Tile	6	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:14:45.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28949, sync = True, waitForSettling = True)
17-03-17 19:14:45.398 -07 000000610 INF: Z Motor: Moving to -0.132520 mm, started at -0.139288 mm, distance = 6.77 um
17-03-17 19:14:45.398 -07 000000610 INF: FPGA: Xmit ZDACW 28949\n [Z Motor]
17-03-17 19:14:45.398 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:14:45.408 -07 000000610 INF: FPGA: 'ZDACW 28949' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:45.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:45.408 -07 000000569 INF: FPGA: Recv ZDACR 28949
17-03-17 19:14:45.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:45.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:14:45.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:45.568 -07 000000618 INF: FPGA: Recv ZSGSRD 29919
17-03-17 19:14:45.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:45.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:45.578 -07 000000561 INF: FPGA: Recv ZSGSRD 29920
17-03-17 19:14:45.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:45.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:45.588 -07 000000482 INF: FPGA: Recv ZSGSRD 29915
17-03-17 19:14:45.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:45.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:45.598 -07 000000551 INF: FPGA: Recv ZSGSRD 29918
17-03-17 19:14:45.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:45.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:45.608 -07 000000478 INF: FPGA: Recv ZSGSRD 29919
17-03-17 19:14:45.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:45.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:45.618 -07 000000012 INF: FPGA: Recv ZSGSRD 29917
17-03-17 19:14:45.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:45.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:45.628 -07 000000547 INF: FPGA: Recv ZSGSRD 29914
17-03-17 19:14:45.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:45.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:45.638 -07 000000569 INF: FPGA: Recv ZSGSRD 29921
17-03-17 19:14:45.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:45.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:45.648 -07 000000502 INF: FPGA: Recv ZSGSRD 29917
17-03-17 19:14:45.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:45.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:45.658 -07 000000623 INF: FPGA: Recv ZSGSRD 29921
17-03-17 19:14:45.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:45.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:45.668 -07 000000561 INF: FPGA: Recv ZPIEZORD 25569
17-03-17 19:14:45.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:45.678 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -9.6 V.
17-03-17 19:14:45.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29918 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29918 (-131.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29914 (-131.7 uncal um), Max = 29921 (-131.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:14:45.678 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29918, posNoise = 3, negNoise = 4
17-03-17 19:14:45.678 -07 000000610 INF: Z Motor: After move to -0.132520, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:45.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:14:45.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:45.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:45.678 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:45.678 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:45.678 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:14:45.678 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:45.678 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:14:45.678 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:14:45.678 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:14:45.678 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:14:45.678 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:14:45.678 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:14:45.688 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:14:45.688 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:14:45.688 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:14:45.688 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:14:45.688 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:14:45.688 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:14:45.698 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:14:45.698 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:14:45.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 29126 150\n [Camera]
17-03-17 19:14:45.898 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 19:14:46.298 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:14:46.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:14:46.298 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:46.298 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:46.298 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:14:46.298 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:14:46.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:14:46.308 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:46.418 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:46.418 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:14:46.488 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29126 784
17-03-17 19:14:46.638 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:14:46.668 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:14:46.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:14:46.678 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 19:14:46.678 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:14:46.678 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:46.678 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:46.678 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:14:46.798 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:14:46.798 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:14:46.798 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:46.798 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:46.808 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 499 ms.
17-03-17 19:14:46.828 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:14:46.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:14:46.828 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:46.828 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:14:46.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:14:46.838 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:46.838 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:46.838 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:14:46.838 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:46.838 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:14:46.858 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.989471,
17-03-17 19:14:47.018 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:14:47.018 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:14:47.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 29126 150' command took 2 ms to send, 1318 ms to get response, and 1326 ms overall
17-03-17 19:14:47.028 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.133073
17-03-17 19:14:47.028 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13307 mm
17-03-17 19:14:47.028 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:14:47.028 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:14:47.028 -07 000000012 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 19:14:47.028 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:47.028 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29070, sync = True, waitForSettling = False)
17-03-17 19:14:47.028 -07 000000512 INF: Z Motor: Moving to -0.133074 mm, started at -0.132523 mm, distance = -0.55 um
17-03-17 19:14:47.028 -07 000000502 INF: FPGA: Recv YRDPOS 131191
17-03-17 19:14:47.038 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:14:47.038 -07 000000012 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:47.038 -07 000000512 INF: FPGA: Xmit ZDACW 29070\n [Z Motor]
17-03-17 19:14:47.038 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:14:47.038 -07 000000012 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:14:47.038 -07 000000012 INF: Y Motor: Moving 1335 steps-10
17-03-17 19:14:47.048 -07 000000512 INF: FPGA: 'ZDACW 29070' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:14:47.048 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:47.048 -07 000000502 INF: FPGA: Recv ZDACR 29070
17-03-17 19:14:47.058 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:14:47.058 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:47.058 -07 000000512 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 19:14:47.218 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:14:47.218 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:14:47.218 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:14:47.218 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:47.218 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:14:47.218 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:47.228 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:14:47.228 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:14:47.228 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:14:47.228 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:14:47.428 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 19:14:47.428 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:14:47.468 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:47.468 -07 000000512 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:14:47.478 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:47.478 -07 000000012 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:47.478 -07 000000012 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:14:47.478 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.835 mm, average velocity = 2.119 mm/sec
17-03-17 19:14:48.428 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:48.428 -07 000000547 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:14:48.438 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:48.438 -07 000000012 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:48.458 -07 000000012 INF: Y Motor: After move to 64.892609, error = -0.012726, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:14:48.458 -07 000000012 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:14:48.458 -07 000000012 INF: Y Motor: Moved to 64.8799 after 1424 ms (table move)
17-03-17 19:14:48.458 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133074 mm (DAC = 29070)
17-03-17 19:14:48.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.468 -07 000000547 INF: FPGA: Recv ZSGSRD 29996
17-03-17 19:14:48.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:14:48.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.498 -07 000000608 INF: FPGA: Recv ZSGSRD 30008
17-03-17 19:14:48.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:14:48.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.508 -07 000000512 INF: FPGA: Recv ZSGSRD 30008
17-03-17 19:14:48.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:48.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.538 -07 000000541 INF: FPGA: Recv ZSGSRD 29997
17-03-17 19:14:48.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:14:48.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.548 -07 000000541 INF: FPGA: Recv ZSGSRD 29999
17-03-17 19:14:48.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:48.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.558 -07 000000541 INF: FPGA: Recv ZSGSRD 30005
17-03-17 19:14:48.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:48.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.568 -07 000000512 INF: FPGA: Recv ZSGSRD 30006
17-03-17 19:14:48.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:48.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.578 -07 000000512 INF: FPGA: Recv ZSGSRD 30009
17-03-17 19:14:48.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:48.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.588 -07 000000512 INF: FPGA: Recv ZSGSRD 30006
17-03-17 19:14:48.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:48.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.598 -07 000000512 INF: FPGA: Recv ZSGSRD 30007
17-03-17 19:14:48.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:48.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:48.608 -07 000000512 INF: FPGA: Recv ZPIEZORD 25713
17-03-17 19:14:48.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:48.618 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.436 V. Piezo Error = -9.4 V.
17-03-17 19:14:48.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30004 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30006 (-132.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29996 (-132.2 uncal um), Max = 30009 (-132.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:14:48.618 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30004, posNoise = 5, negNoise = 8
17-03-17 19:14:48.618 -07 000000610 INF: Z Motor: After move to -0.133074, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:48.618 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 157 ms (allowed 150 ms), total time = 1583 ms
17-03-17 19:14:48.618 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 157 ms, longer than max expected time of 150 ms
17-03-17 19:14:48.618 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 19:14:48.618 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:14:48.618 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8798828125, Z-position -0.133075413112531. ----------
17-03-17 19:14:48.618 -07 000000610 INF: Cycle	23	Tile	7	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:14:48.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28893, sync = True, waitForSettling = True)
17-03-17 19:14:48.618 -07 000000610 INF: Z Motor: Moving to -0.132264 mm, started at -0.133075 mm, distance = 0.81 um
17-03-17 19:14:48.618 -07 000000610 INF: FPGA: Xmit ZDACW 28893\n [Z Motor]
17-03-17 19:14:48.618 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:14:48.628 -07 000000610 INF: FPGA: 'ZDACW 28893' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:14:48.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:48.628 -07 000000561 INF: FPGA: Recv ZDACR 28893
17-03-17 19:14:48.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:48.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:14:48.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.788 -07 000000551 INF: FPGA: Recv ZSGSRD 29879
17-03-17 19:14:48.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:48.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.798 -07 000000541 INF: FPGA: Recv ZSGSRD 29879
17-03-17 19:14:48.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:48.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.808 -07 000000541 INF: FPGA: Recv ZSGSRD 29879
17-03-17 19:14:48.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:48.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.818 -07 000000541 INF: FPGA: Recv ZSGSRD 29881
17-03-17 19:14:48.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:48.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.828 -07 000000541 INF: FPGA: Recv ZSGSRD 29881
17-03-17 19:14:48.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:48.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.838 -07 000000541 INF: FPGA: Recv ZSGSRD 29883
17-03-17 19:14:48.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:48.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.848 -07 000000012 INF: FPGA: Recv ZSGSRD 29885
17-03-17 19:14:48.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:48.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.858 -07 000000012 INF: FPGA: Recv ZSGSRD 29874
17-03-17 19:14:48.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:48.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.868 -07 000000012 INF: FPGA: Recv ZSGSRD 29881
17-03-17 19:14:48.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:48.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:48.878 -07 000000012 INF: FPGA: Recv ZSGSRD 29879
17-03-17 19:14:48.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:48.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:48.888 -07 000000012 INF: FPGA: Recv ZPIEZORD 25543
17-03-17 19:14:48.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:48.898 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.409 V. Piezo Error = -9.5 V.
17-03-17 19:14:48.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29880 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29880 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29874 (-131.5 uncal um), Max = 29885 (-131.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:14:48.898 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29880, posNoise = 5, negNoise = 6
17-03-17 19:14:48.898 -07 000000610 INF: Z Motor: After move to -0.132264, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:48.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:14:48.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:48.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:48.898 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:48.898 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:14:48.898 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:14:48.898 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:14:48.898 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:48.898 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:48.898 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:14:48.898 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:14:48.898 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:14:48.898 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:14:48.908 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:14:48.908 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:14:48.908 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:14:48.908 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:14:48.918 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 19:14:48.918 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:14:48.918 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 19:14:48.918 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:14:48.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 29070 150\n [Camera]
17-03-17 19:14:49.128 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:14:49.528 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:14:49.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:14:49.528 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:49.528 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:49.528 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 19:14:49.528 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:14:49.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:14:49.528 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:49.528 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:49.528 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:14:49.718 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29070 784
17-03-17 19:14:49.868 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:14:49.908 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:14:49.908 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:14:49.908 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:49.908 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:14:49.908 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:14:49.908 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:49.908 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:49.908 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:49.908 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:14:49.918 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:14:50.058 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:14:50.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:14:50.058 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:50.058 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:50.058 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:14:50.058 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:14:50.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:14:50.068 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:50.068 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:50.068 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1069092912, 0x0, 418435064) start.
17-03-17 19:14:50.248 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:14:50.248 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:14:50.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 29070 150' command took 2 ms to send, 1318 ms to get response, and 1325 ms overall
17-03-17 19:14:50.258 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.132879
17-03-17 19:14:50.258 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13288 mm
17-03-17 19:14:50.258 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:14:50.258 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:14:50.258 -07 000000547 INF: Y Motor: Moving to 65.7226 mm, started at 64.8799 mm, delta = 0.8427 mm
17-03-17 19:14:50.258 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:50.258 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29027, sync = True, waitForSettling = False)
17-03-17 19:14:50.258 -07 000000541 INF: Z Motor: Moving to -0.132877 mm, started at -0.132279 mm, distance = -0.60 um
17-03-17 19:14:50.258 -07 000000608 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:14:50.268 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:14:50.268 -07 000000547 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:50.268 -07 000000547 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:14:50.268 -07 000000547 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:14:50.268 -07 000000541 INF: FPGA: Xmit ZDACW 29027\n [Z Motor]
17-03-17 19:14:50.268 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:14:50.278 -07 000000541 INF: FPGA: 'ZDACW 29027' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:14:50.278 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:50.278 -07 000000623 INF: FPGA: Recv ZDACR 29027
17-03-17 19:14:50.288 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:50.288 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:14:50.288 -07 000000541 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 19:14:50.448 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1069092912, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:14:50.448 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:14:50.448 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:14:50.448 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:50.448 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:14:50.448 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:50.448 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:50.448 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:14:50.448 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:50.458 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:14:50.658 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:14:50.658 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 19:14:50.698 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:50.698 -07 000000551 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:14:50.708 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:14:50.708 -07 000000547 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:50.708 -07 000000547 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:14:50.708 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 19:14:51.658 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:51.658 -07 000000502 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:14:51.668 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:51.668 -07 000000547 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:51.668 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:14:51.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:14:51.688 -07 000000547 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:14:51.688 -07 000000547 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:14:51.688 -07 000000547 INF: Y Motor: Moved to 65.7148 after 1425 ms (table move)
17-03-17 19:14:51.688 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132877 mm (DAC = 29027)
17-03-17 19:14:51.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:51.688 -07 000000480 INF: FPGA: Recv ZSGSRD 29965
17-03-17 19:14:51.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:14:51.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:51.698 -07 000000012 INF: FPGA: Recv ZSGSRD 29965
17-03-17 19:14:51.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:51.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:51.708 -07 000000547 INF: FPGA: Recv ZSGSRD 29978
17-03-17 19:14:51.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:51.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:51.718 -07 000000012 INF: FPGA: Recv ZSGSRD 29980
17-03-17 19:14:51.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:51.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:51.728 -07 000000012 INF: FPGA: Recv ZSGSRD 29974
17-03-17 19:14:51.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:51.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:51.738 -07 000000547 INF: FPGA: Recv ZSGSRD 29980
17-03-17 19:14:51.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:51.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:51.748 -07 000000512 INF: FPGA: Recv ZSGSRD 29977
17-03-17 19:14:51.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:51.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:51.758 -07 000000512 INF: FPGA: Recv ZSGSRD 29972
17-03-17 19:14:51.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:51.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:51.768 -07 000000512 INF: FPGA: Recv ZSGSRD 29970
17-03-17 19:14:51.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:51.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:51.778 -07 000000480 INF: FPGA: Recv ZSGSRD 29970
17-03-17 19:14:51.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:51.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:51.788 -07 000000547 INF: FPGA: Recv ZPIEZORD 25702
17-03-17 19:14:51.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:51.798 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.429 V. Piezo Error = -9.4 V.
17-03-17 19:14:51.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29973 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29973 (-132.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29965 (-132.0 uncal um), Max = 29980 (-132.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:14:51.798 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29973, posNoise = 7, negNoise = 8
17-03-17 19:14:51.798 -07 000000610 INF: Z Motor: After move to -0.132877, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:51.798 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 106 ms (allowed 150 ms), total time = 1533 ms
17-03-17 19:14:51.798 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:14:51.848 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 19:14:51.848 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:14:51.848 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.132876262536136. ----------
17-03-17 19:14:51.848 -07 000000610 INF: Cycle	23	Tile	8	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:14:51.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28851, sync = True, waitForSettling = True)
17-03-17 19:14:51.848 -07 000000610 INF: Z Motor: Moving to -0.132071 mm, started at -0.132876 mm, distance = 0.80 um
17-03-17 19:14:51.848 -07 000000610 INF: FPGA: Xmit ZDACW 28851\n [Z Motor]
17-03-17 19:14:51.848 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:14:51.858 -07 000000610 INF: FPGA: 'ZDACW 28851' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:14:51.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:51.858 -07 000000547 INF: FPGA: Recv ZDACR 28851
17-03-17 19:14:51.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:51.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:14:52.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:52.018 -07 000000547 INF: FPGA: Recv ZSGSRD 29847
17-03-17 19:14:52.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:52.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:52.028 -07 000000012 INF: FPGA: Recv ZSGSRD 29855
17-03-17 19:14:52.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:52.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:52.038 -07 000000547 INF: FPGA: Recv ZSGSRD 29853
17-03-17 19:14:52.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:52.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:52.048 -07 000000547 INF: FPGA: Recv ZSGSRD 29847
17-03-17 19:14:52.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:52.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:52.058 -07 000000012 INF: FPGA: Recv ZSGSRD 29852
17-03-17 19:14:52.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:52.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:52.068 -07 000000480 INF: FPGA: Recv ZSGSRD 29854
17-03-17 19:14:52.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:52.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:52.078 -07 000000012 INF: FPGA: Recv ZSGSRD 29844
17-03-17 19:14:52.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:52.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:52.088 -07 000000512 INF: FPGA: Recv ZSGSRD 29844
17-03-17 19:14:52.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:52.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:52.098 -07 000000480 INF: FPGA: Recv ZSGSRD 29847
17-03-17 19:14:52.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:52.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:52.108 -07 000000547 INF: FPGA: Recv ZSGSRD 29856
17-03-17 19:14:52.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:52.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:52.118 -07 000000012 INF: FPGA: Recv ZPIEZORD 25521
17-03-17 19:14:52.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:52.128 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -9.5 V.
17-03-17 19:14:52.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29850 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29850 (-131.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29844 (-131.3 uncal um), Max = 29856 (-131.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:14:52.128 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29850, posNoise = 6, negNoise = 6
17-03-17 19:14:52.128 -07 000000610 INF: Z Motor: After move to -0.132071, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:52.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:14:52.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:52.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:52.128 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:52.128 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:14:52.128 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:14:52.128 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:52.128 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:14:52.128 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:52.128 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:14:52.128 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:14:52.128 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:14:52.128 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:14:52.128 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:14:52.128 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:14:52.138 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:14:52.138 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:14:52.148 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:14:52.148 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:14:52.148 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:14:52.148 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:14:52.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 29027 150\n [Camera]
17-03-17 19:14:52.218 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.99219,
17-03-17 19:14:52.348 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:14:52.748 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:14:52.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:14:52.748 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:52.748 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:52.748 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1104515176, 0x0, 391868352) start.
17-03-17 19:14:52.758 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:14:52.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:14:52.758 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:52.758 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:52.758 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1139937440, 0x0, 418435064) start.
17-03-17 19:14:52.948 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29027 784
17-03-17 19:14:53.098 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:14:53.128 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1104515176, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:14:53.128 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:14:53.128 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:53.128 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1139937440, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:14:53.128 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:14:53.128 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:53.138 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:14:53.138 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:14:53.138 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:14:53.138 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:14:53.288 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:14:53.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:14:53.288 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:53.288 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:53.288 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:14:53.288 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:14:53.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:14:53.288 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:53.288 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:53.288 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:14:53.478 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:14:53.478 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:14:53.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 29027 150' command took 2 ms to send, 1314 ms to get response, and 1325 ms overall
17-03-17 19:14:53.478 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.132369
17-03-17 19:14:53.478 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13237 mm
17-03-17 19:14:53.478 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:14:53.478 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:14:53.478 -07 000000482 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 19:14:53.478 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:53.478 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 28916, sync = True, waitForSettling = False)
17-03-17 19:14:53.478 -07 000000478 INF: Z Motor: Moving to -0.132369 mm, started at -0.132086 mm, distance = -0.28 um
17-03-17 19:14:53.488 -07 000000478 INF: FPGA: Xmit ZDACW 28916\n [Z Motor]
17-03-17 19:14:53.488 -07 000000569 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:14:53.488 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:14:53.488 -07 000000482 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:53.488 -07 000000482 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:14:53.488 -07 000000482 INF: Y Motor: Moving 1340 steps-16
17-03-17 19:14:53.488 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:14:53.498 -07 000000478 INF: FPGA: 'ZDACW 28916' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:53.498 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:14:53.508 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:53.508 -07 000000476 INF: FPGA: Recv ZDACR 28916
17-03-17 19:14:53.518 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:14:53.518 -07 000000478 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 19:14:53.678 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:14:53.678 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:14:53.678 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:53.678 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 19:14:53.678 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:14:53.678 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:53.688 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:14:53.688 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:14:53.688 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:14:53.698 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:14:53.868 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 19:14:53.868 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 386 ms overall
17-03-17 19:14:53.908 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:53.908 -07 000000547 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:14:53.918 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:14:53.918 -07 000000482 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:53.918 -07 000000482 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:14:53.918 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.838 mm, average velocity = 2.170 mm/sec
17-03-17 19:14:54.868 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:54.868 -07 000000569 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:14:54.878 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:54.878 -07 000000482 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:54.898 -07 000000482 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:14:54.898 -07 000000482 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:14:54.898 -07 000000482 INF: Y Motor: Moved to 66.5400 after 1413 ms (table move)
17-03-17 19:14:54.898 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132369 mm (DAC = 28916)
17-03-17 19:14:54.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:54.908 -07 000000478 INF: FPGA: Recv ZSGSRD 29891
17-03-17 19:14:54.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:14:54.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:54.908 -07 000000012 INF: FPGA: Recv ZSGSRD 29888
17-03-17 19:14:54.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:54.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:54.918 -07 000000478 INF: FPGA: Recv ZSGSRD 29894
17-03-17 19:14:54.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:54.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:54.928 -07 000000476 INF: FPGA: Recv ZSGSRD 29903
17-03-17 19:14:54.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:54.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:54.938 -07 000000478 INF: FPGA: Recv ZSGSRD 29902
17-03-17 19:14:54.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:54.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:54.948 -07 000000482 INF: FPGA: Recv ZSGSRD 29898
17-03-17 19:14:54.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:54.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:54.958 -07 000000478 INF: FPGA: Recv ZSGSRD 29892
17-03-17 19:14:54.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:54.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:54.968 -07 000000482 INF: FPGA: Recv ZSGSRD 29893
17-03-17 19:14:54.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:54.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:54.978 -07 000000431 INF: FPGA: Recv ZSGSRD 29893
17-03-17 19:14:54.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:54.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:54.988 -07 000000476 INF: FPGA: Recv ZSGSRD 29893
17-03-17 19:14:54.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:54.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:54.998 -07 000000431 INF: FPGA: Recv ZPIEZORD 25583
17-03-17 19:14:55.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:55.008 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -9.5 V.
17-03-17 19:14:55.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29895 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29893 (-131.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29888 (-131.5 uncal um), Max = 29903 (-131.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:14:55.008 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29895, posNoise = 8, negNoise = 7
17-03-17 19:14:55.008 -07 000000610 INF: Z Motor: After move to -0.132369, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:55.008 -07 000000610 INF: Z Motor: Settle wait time = 1414 ms, measure time = 106 ms (allowed 150 ms), total time = 1520 ms
17-03-17 19:14:55.008 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:14:55.058 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 19:14:55.058 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:14:55.058 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.132375173989079. ----------
17-03-17 19:14:55.058 -07 000000610 INF: Cycle	23	Tile	9	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:14:55.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28739, sync = True, waitForSettling = True)
17-03-17 19:14:55.058 -07 000000610 INF: Z Motor: Moving to -0.131559 mm, started at -0.132375 mm, distance = 0.82 um
17-03-17 19:14:55.058 -07 000000610 INF: FPGA: Xmit ZDACW 28739\n [Z Motor]
17-03-17 19:14:55.058 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:14:55.068 -07 000000610 INF: FPGA: 'ZDACW 28739' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:14:55.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:55.068 -07 000000618 INF: FPGA: Recv ZDACR 28739
17-03-17 19:14:55.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:55.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:14:55.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:55.228 -07 000000618 INF: FPGA: Recv ZSGSRD 29772
17-03-17 19:14:55.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:55.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:55.238 -07 000000618 INF: FPGA: Recv ZSGSRD 29774
17-03-17 19:14:55.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:55.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:55.248 -07 000000618 INF: FPGA: Recv ZSGSRD 29773
17-03-17 19:14:55.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:55.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:55.258 -07 000000482 INF: FPGA: Recv ZSGSRD 29769
17-03-17 19:14:55.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:55.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:55.268 -07 000000618 INF: FPGA: Recv ZSGSRD 29772
17-03-17 19:14:55.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:55.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:55.278 -07 000000547 INF: FPGA: Recv ZSGSRD 29769
17-03-17 19:14:55.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:55.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:55.288 -07 000000482 INF: FPGA: Recv ZSGSRD 29768
17-03-17 19:14:55.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:55.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:55.298 -07 000000482 INF: FPGA: Recv ZSGSRD 29767
17-03-17 19:14:55.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:55.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:55.308 -07 000000547 INF: FPGA: Recv ZSGSRD 29771
17-03-17 19:14:55.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:55.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:55.318 -07 000000618 INF: FPGA: Recv ZSGSRD 29769
17-03-17 19:14:55.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:55.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:55.328 -07 000000482 INF: FPGA: Recv ZPIEZORD 25420
17-03-17 19:14:55.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:55.338 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.385 V. Piezo Error = -9.5 V.
17-03-17 19:14:55.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29770 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29770 (-130.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29767 (-130.8 uncal um), Max = 29774 (-130.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:14:55.338 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29770, posNoise = 4, negNoise = 3
17-03-17 19:14:55.338 -07 000000610 INF: Z Motor: After move to -0.131559, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:55.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:14:55.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:55.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:55.338 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:55.338 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:55.338 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:14:55.338 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:55.338 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:14:55.338 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:14:55.338 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:14:55.338 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:14:55.338 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:14:55.338 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:14:55.348 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:14:55.348 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:14:55.348 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:14:55.348 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:14:55.358 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:14:55.358 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:14:55.358 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:14:55.358 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:14:55.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28916 150\n [Camera]
17-03-17 19:14:55.558 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:14:55.958 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:14:55.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:14:55.968 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:55.968 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:55.968 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 19:14:55.968 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:14:55.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:14:55.968 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:55.968 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:55.968 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:14:56.158 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28916 784
17-03-17 19:14:56.308 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:14:56.348 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:14:56.348 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:14:56.348 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:56.358 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:56.358 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:14:56.358 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:14:56.358 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:14:56.358 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:56.358 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:14:56.368 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:14:56.498 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:14:56.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:14:56.498 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:56.498 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:56.498 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 19:14:56.508 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:14:56.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:14:56.508 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:14:56.508 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:14:56.508 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 19:14:56.668 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:14:56.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:14:56.688 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:14:56.688 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:14:56.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28916 150' command took 2 ms to send, 1315 ms to get response, and 1325 ms overall
17-03-17 19:14:56.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:14:56.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.131572147471359. ------
17-03-17 19:14:56.698 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:14:56.698 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13826 mm
17-03-17 19:14:56.698 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:14:56.818 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:14:56.818 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 126 ms overall
17-03-17 19:14:56.818 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:14:56.828 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30204, sync = True, waitForSettling = False)
17-03-17 19:14:56.828 -07 000000623 INF: Z Motor: Moving to -0.138265 mm, started at -0.131572 mm, distance = -6.69 um
17-03-17 19:14:56.828 -07 000000623 INF: FPGA: Xmit ZDACW 30204\n [Z Motor]
17-03-17 19:14:56.828 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:14:56.828 -07 000000502 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 19:14:56.828 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:14:56.838 -07 000000623 INF: FPGA: 'ZDACW 30204' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:14:56.838 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:56.838 -07 000000541 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:14:56.848 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:14:56.848 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:56.848 -07 000000502 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:56.848 -07 000000502 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:14:56.848 -07 000000502 INF: Y Motor: Moving 1348 steps-26
17-03-17 19:14:56.848 -07 000000012 INF: FPGA: Recv ZDACR 30204
17-03-17 19:14:56.858 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:14:56.858 -07 000000623 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 19:14:56.858 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:14:56.888 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:14:56.888 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:14:56.888 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:56.888 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 19:14:56.888 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:14:56.888 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:56.898 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:56.898 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:14:56.898 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:14:56.908 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:14:57.028 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:14:57.028 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-17 19:14:57.228 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 19:14:57.228 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:14:57.268 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:57.268 -07 000000561 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:14:57.278 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:14:57.278 -07 000000502 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:57.278 -07 000000502 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 19:14:57.278 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.177 mm/sec
17-03-17 19:14:57.578 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.016692,
17-03-17 19:14:58.228 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:14:58.228 -07 000000623 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:14:58.238 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:58.238 -07 000000502 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:14:58.258 -07 000000502 INF: Y Motor: After move to 67.382607, error = -0.009560, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:14:58.258 -07 000000502 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:14:58.258 -07 000000502 INF: Y Motor: Moved to 67.3730 after 1429 ms (table move)
17-03-17 19:14:58.258 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138265 mm (DAC = 30204)
17-03-17 19:14:58.258 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:58.258 -07 000000502 INF: FPGA: Recv ZSGSRD 30815
17-03-17 19:14:58.268 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:14:58.268 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:58.268 -07 000000608 INF: FPGA: Recv ZSGSRD 30806
17-03-17 19:14:58.278 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:58.278 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:58.278 -07 000000561 INF: FPGA: Recv ZSGSRD 30813
17-03-17 19:14:58.288 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:58.288 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:58.288 -07 000000561 INF: FPGA: Recv ZSGSRD 30814
17-03-17 19:14:58.298 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:58.298 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:58.298 -07 000000561 INF: FPGA: Recv ZSGSRD 30814
17-03-17 19:14:58.308 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:58.308 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:58.308 -07 000000561 INF: FPGA: Recv ZSGSRD 30817
17-03-17 19:14:58.318 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:58.318 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:58.318 -07 000000561 INF: FPGA: Recv ZSGSRD 30810
17-03-17 19:14:58.328 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:58.328 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:58.328 -07 000000623 INF: FPGA: Recv ZSGSRD 30808
17-03-17 19:14:58.338 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:58.338 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:58.338 -07 000000012 INF: FPGA: Recv ZSGSRD 30809
17-03-17 19:14:58.348 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:58.348 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:58.348 -07 000000561 INF: FPGA: Recv ZSGSRD 30812
17-03-17 19:14:58.358 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:58.358 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:58.358 -07 000000561 INF: FPGA: Recv ZPIEZORD 26779
17-03-17 19:14:58.368 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:58.368 -07 000000618 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.609 V. Piezo Error = -8.9 V.
17-03-17 19:14:58.368 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30812 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30812 (-137.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30806 (-137.4 uncal um), Max = 30817 (-137.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:14:58.368 -07 000000618 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30812, posNoise = 5, negNoise = 6
17-03-17 19:14:58.368 -07 000000618 INF: Z Motor: After move to -0.138265, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:58.368 -07 000000618 INF: Z Motor: Settle wait time = 1433 ms, measure time = 107 ms (allowed 150 ms), total time = 1540 ms
17-03-17 19:14:58.368 -07 000000618 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:14:58.418 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1718 ms
17-03-17 19:14:58.418 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:14:58.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:58.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:58.418 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:58.418 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:58.418 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:14:58.418 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:58.418 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:14:58.418 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:14:58.418 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:14:58.428 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:14:58.438 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:14:58.438 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:14:58.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:14:58.488 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:14:58.688 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:14:58.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:14:58.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:14:58.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:14:58.728 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:14:58.728 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 19:14:58.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 19:14:58.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 19:14:58.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:14:58.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:14:58.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 19:14:58.828 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:14:58.828 -07 000000541 INF: Autofocus start
17-03-17 19:14:58.828 -07 000000541 INF: MeasureProfile start
17-03-17 19:14:58.828 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:14:58.838 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:14:58.838 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:14:58.838 -07 000000541 INF: MeasureProfile done
17-03-17 19:14:58.838 -07 000000541 INF: X=9  Z correction [um]=0.01934518
17-03-17 19:14:58.838 -07 000000541 INF: Autofocus finished
17-03-17 19:14:59.038 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:14:59.038 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:14:59.038 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.373046875, Z-position -0.138266176523074. ----------
17-03-17 19:14:59.038 -07 000000610 INF: Cycle	23	Tile	10	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:14:59.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28720, sync = True, waitForSettling = True)
17-03-17 19:14:59.048 -07 000000610 INF: Z Motor: Moving to -0.131472 mm, started at -0.138266 mm, distance = 6.79 um
17-03-17 19:14:59.048 -07 000000610 INF: FPGA: Xmit ZDACW 28720\n [Z Motor]
17-03-17 19:14:59.048 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:14:59.058 -07 000000610 INF: FPGA: 'ZDACW 28720' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:59.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:14:59.058 -07 000000478 INF: FPGA: Recv ZDACR 28720
17-03-17 19:14:59.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:59.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:14:59.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:59.218 -07 000000623 INF: FPGA: Recv ZSGSRD 29757
17-03-17 19:14:59.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:14:59.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:59.238 -07 000000623 INF: FPGA: Recv ZSGSRD 29758
17-03-17 19:14:59.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:14:59.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:59.248 -07 000000478 INF: FPGA: Recv ZSGSRD 29754
17-03-17 19:14:59.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:59.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:59.278 -07 000000478 INF: FPGA: Recv ZSGSRD 29756
17-03-17 19:14:59.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:14:59.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:59.288 -07 000000478 INF: FPGA: Recv ZSGSRD 29758
17-03-17 19:14:59.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:14:59.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:59.308 -07 000000478 INF: FPGA: Recv ZSGSRD 29759
17-03-17 19:14:59.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:14:59.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:59.318 -07 000000478 INF: FPGA: Recv ZSGSRD 29758
17-03-17 19:14:59.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:59.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:59.328 -07 000000623 INF: FPGA: Recv ZSGSRD 29757
17-03-17 19:14:59.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:59.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:59.338 -07 000000478 INF: FPGA: Recv ZSGSRD 29756
17-03-17 19:14:59.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:59.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:14:59.348 -07 000000623 INF: FPGA: Recv ZSGSRD 29757
17-03-17 19:14:59.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:59.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:14:59.358 -07 000000478 INF: FPGA: Recv ZPIEZORD 25416
17-03-17 19:14:59.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:14:59.368 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.382 V. Piezo Error = -9.5 V.
17-03-17 19:14:59.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29757 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29757 (-130.7 uncal um), StdDev = 1 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29754 (-130.7 uncal um), Max = 29759 (-130.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:14:59.368 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29757, posNoise = 2, negNoise = 3
17-03-17 19:14:59.368 -07 000000610 INF: Z Motor: After move to -0.131472, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:14:59.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 321 ms)
17-03-17 19:14:59.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:14:59.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:14:59.368 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:14:59.368 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:14:59.368 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:14:59.368 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:14:59.368 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:14:59.368 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:14:59.368 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:14:59.368 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:14:59.368 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:14:59.368 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:14:59.378 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:14:59.378 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:14:59.378 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:14:59.378 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:14:59.388 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:14:59.388 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:14:59.388 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:14:59.388 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:14:59.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28897 150\n [Camera]
17-03-17 19:14:59.588 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:14:59.988 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:14:59.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:14:59.998 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:14:59.998 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:14:59.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:14:59.998 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:14:59.998 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 19:14:59.998 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:00.008 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:00.008 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:15:00.188 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28897 784
17-03-17 19:15:00.338 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:15:00.368 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 19:15:00.368 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 19:15:00.368 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:00.378 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 19:15:00.378 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:15:00.378 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:00.378 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:15:00.378 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:15:00.378 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:00.388 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:15:00.528 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:15:00.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:15:00.528 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:00.528 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:15:00.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:15:00.528 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:00.648 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:00.648 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:15:00.648 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:00.648 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:15:00.718 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:15:00.718 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:15:00.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28897 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-17 19:15:00.728 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.131427
17-03-17 19:15:00.728 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13143 mm
17-03-17 19:15:00.728 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:15:00.728 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 28710, sync = True, waitForSettling = False)
17-03-17 19:15:00.728 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:15:00.728 -07 000000478 INF: Y Motor: Moving to 68.2126 mm, started at 67.3730 mm, delta = 0.8396 mm
17-03-17 19:15:00.728 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:00.728 -07 000000547 INF: Z Motor: Moving to -0.131426 mm, started at -0.131489 mm, distance = 0.06 um
17-03-17 19:15:00.738 -07 000000547 INF: FPGA: Xmit ZDACW 28710\n [Z Motor]
17-03-17 19:15:00.738 -07 000000569 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:15:00.738 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:15:00.738 -07 000000478 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:00.738 -07 000000478 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:15:00.738 -07 000000478 INF: Y Motor: Moving 1343 steps-20
17-03-17 19:15:00.738 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:15:00.748 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:15:00.748 -07 000000547 INF: FPGA: 'ZDACW 28710' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:15:00.758 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:15:00.758 -07 000000626 INF: FPGA: Recv ZDACR 28710
17-03-17 19:15:00.768 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:15:00.768 -07 000000547 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 19:15:01.028 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:15:01.028 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:15:01.028 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:01.028 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:15:01.028 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:15:01.028 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:01.038 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:15:01.038 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-17 19:15:01.038 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:15:01.038 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 19:15:01.118 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 19:15:01.118 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 19:15:01.158 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:01.158 -07 000000547 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:15:01.168 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:15:01.168 -07 000000478 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:01.168 -07 000000478 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:15:01.168 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.840 mm, average velocity = 2.175 mm/sec
17-03-17 19:15:01.668 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:15:01.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:15:02.118 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:02.118 -07 000000569 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:15:02.128 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:15:02.128 -07 000000478 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:02.148 -07 000000478 INF: Y Motor: After move to 68.212608, error = -0.006554, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:15:02.148 -07 000000478 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:15:02.148 -07 000000478 INF: Y Motor: Moved to 68.2061 after 1417 ms (table move)
17-03-17 19:15:02.148 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131426 mm (DAC = 28710)
17-03-17 19:15:02.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:02.148 -07 000000478 INF: FPGA: Recv ZSGSRD 29746
17-03-17 19:15:02.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:15:02.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:02.158 -07 000000623 INF: FPGA: Recv ZSGSRD 29751
17-03-17 19:15:02.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:02.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:02.168 -07 000000478 INF: FPGA: Recv ZSGSRD 29747
17-03-17 19:15:02.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:02.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:02.178 -07 000000623 INF: FPGA: Recv ZSGSRD 29754
17-03-17 19:15:02.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:02.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:02.188 -07 000000626 INF: FPGA: Recv ZSGSRD 29752
17-03-17 19:15:02.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:02.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:02.198 -07 000000569 INF: FPGA: Recv ZSGSRD 29745
17-03-17 19:15:02.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:02.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:02.208 -07 000000478 INF: FPGA: Recv ZSGSRD 29750
17-03-17 19:15:02.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:02.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:02.218 -07 000000547 INF: FPGA: Recv ZSGSRD 29741
17-03-17 19:15:02.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:02.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:02.228 -07 000000626 INF: FPGA: Recv ZSGSRD 29749
17-03-17 19:15:02.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:02.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:02.238 -07 000000431 INF: FPGA: Recv ZSGSRD 29747
17-03-17 19:15:02.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:02.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:15:02.248 -07 000000480 INF: FPGA: Recv ZPIEZORD 25435
17-03-17 19:15:02.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:02.258 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.381 V. Piezo Error = -9.5 V.
17-03-17 19:15:02.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29748 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29748 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29741 (-130.6 uncal um), Max = 29754 (-130.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:15:02.258 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29748, posNoise = 6, negNoise = 7
17-03-17 19:15:02.258 -07 000000610 INF: Z Motor: After move to -0.131426, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:15:02.258 -07 000000610 INF: Z Motor: Settle wait time = 1418 ms, measure time = 104 ms (allowed 150 ms), total time = 1522 ms
17-03-17 19:15:02.258 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:15:02.308 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1576 ms
17-03-17 19:15:02.308 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:15:02.308 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2060546875, Z-position -0.13143081480424. ----------
17-03-17 19:15:02.308 -07 000000610 INF: Cycle	23	Tile	11	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:15:02.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28533, sync = True, waitForSettling = True)
17-03-17 19:15:02.308 -07 000000610 INF: Z Motor: Moving to -0.130616 mm, started at -0.131431 mm, distance = 0.82 um
17-03-17 19:15:02.308 -07 000000610 INF: FPGA: Xmit ZDACW 28533\n [Z Motor]
17-03-17 19:15:02.308 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:15:02.318 -07 000000610 INF: FPGA: 'ZDACW 28533' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:15:02.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:15:02.318 -07 000000431 INF: FPGA: Recv ZDACR 28533
17-03-17 19:15:02.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:02.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:15:02.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:03.248 -07 000000478 INF: FPGA: Recv ZSGSRD 29625
17-03-17 19:15:03.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 760 ms to get response, and 770 ms overall
17-03-17 19:15:03.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:03.248 -07 000000478 INF: FPGA: Recv ZSGSRD 29623
17-03-17 19:15:03.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:15:03.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:03.258 -07 000000512 INF: FPGA: Recv ZSGSRD 29623
17-03-17 19:15:03.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:03.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:03.268 -07 000000480 INF: FPGA: Recv ZSGSRD 29627
17-03-17 19:15:03.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:03.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:03.278 -07 000000569 INF: FPGA: Recv ZSGSRD 29622
17-03-17 19:15:03.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:03.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:03.288 -07 000000478 INF: FPGA: Recv ZSGSRD 29630
17-03-17 19:15:03.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:03.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:03.298 -07 000000480 INF: FPGA: Recv ZSGSRD 29618
17-03-17 19:15:03.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:03.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:03.308 -07 000000512 INF: FPGA: Recv ZSGSRD 29628
17-03-17 19:15:03.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:03.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:03.318 -07 000000623 INF: FPGA: Recv ZSGSRD 29629
17-03-17 19:15:03.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:03.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:03.328 -07 000000480 INF: FPGA: Recv ZSGSRD 29623
17-03-17 19:15:03.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:03.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:15:03.338 -07 000000569 INF: FPGA: Recv ZPIEZORD 25326
17-03-17 19:15:03.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:03.348 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.4 V.
17-03-17 19:15:03.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29625 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29624 (-129.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29618 (-129.8 uncal um), Max = 29630 (-129.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:15:03.348 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29625, posNoise = 5, negNoise = 7
17-03-17 19:15:03.348 -07 000000610 INF: Z Motor: After move to -0.130616, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:15:03.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 1034 ms)
17-03-17 19:15:03.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:15:03.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:15:03.348 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:15:03.348 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:15:03.348 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:15:03.348 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:15:03.348 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:15:03.348 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:15:03.348 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:15:03.348 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:15:03.348 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:15:03.348 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:15:03.358 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:15:03.358 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:15:03.358 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:15:03.358 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:15:03.358 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:15:03.368 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:15:03.368 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:15:03.368 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:15:03.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28710 150\n [Camera]
17-03-17 19:15:03.558 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.005817,
17-03-17 19:15:03.568 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:15:03.968 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:15:03.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:15:03.968 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:03.968 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:15:03.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:15:03.968 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:03.968 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:03.968 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:15:03.968 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:03.968 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:15:04.158 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28710 784
17-03-17 19:15:04.318 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:15:04.368 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:15:04.368 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:15:04.368 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:04.368 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:04.368 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:15:04.378 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:15:04.378 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:15:04.378 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:04.378 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:04.388 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:15:04.498 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:15:04.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:15:04.498 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:04.498 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:04.508 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 19:15:04.508 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:15:04.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:15:04.508 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:04.508 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:04.508 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:15:04.688 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:15:04.698 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:15:04.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28710 150' command took 2 ms to send, 1320 ms to get response, and 1326 ms overall
17-03-17 19:15:04.698 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.131299
17-03-17 19:15:04.698 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13130 mm
17-03-17 19:15:04.698 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:15:04.698 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:15:04.698 -07 000000480 INF: Y Motor: Moving to 69.0426 mm, started at 68.2061 mm, delta = 0.8366 mm
17-03-17 19:15:04.698 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:04.698 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 28682, sync = True, waitForSettling = False)
17-03-17 19:15:04.698 -07 000000512 INF: Z Motor: Moving to -0.131298 mm, started at -0.130641 mm, distance = -0.66 um
17-03-17 19:15:04.698 -07 000000482 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:15:04.708 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:15:04.708 -07 000000480 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:04.708 -07 000000480 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:15:04.708 -07 000000480 INF: Y Motor: Moving 1338 steps-14
17-03-17 19:15:04.708 -07 000000512 INF: FPGA: Xmit ZDACW 28682\n [Z Motor]
17-03-17 19:15:04.708 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:15:04.718 -07 000000512 INF: FPGA: 'ZDACW 28682' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:15:04.718 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:15:04.718 -07 000000482 INF: FPGA: Recv ZDACR 28682
17-03-17 19:15:04.728 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:15:04.728 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:04.728 -07 000000512 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 19:15:04.908 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 19:15:04.908 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:15:04.908 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:04.908 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:15:04.908 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:15:04.908 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:04.908 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:04.908 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:15:04.918 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:04.918 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:15:05.098 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 19:15:05.098 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:15:05.138 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:05.138 -07 000000012 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:15:05.148 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:15:05.148 -07 000000480 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:05.148 -07 000000480 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:15:05.148 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.102 mm/sec
17-03-17 19:15:06.098 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:06.098 -07 000000012 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:15:06.108 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:15:06.108 -07 000000480 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:06.128 -07 000000480 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:15:06.128 -07 000000480 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:15:06.128 -07 000000480 INF: Y Motor: Moved to 69.0278 after 1427 ms (table move)
17-03-17 19:15:06.128 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131298 mm (DAC = 28682)
17-03-17 19:15:06.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.128 -07 000000512 INF: FPGA: Recv ZSGSRD 29733
17-03-17 19:15:06.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:15:06.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.138 -07 000000623 INF: FPGA: Recv ZSGSRD 29731
17-03-17 19:15:06.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.148 -07 000000512 INF: FPGA: Recv ZSGSRD 29723
17-03-17 19:15:06.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.158 -07 000000478 INF: FPGA: Recv ZSGSRD 29727
17-03-17 19:15:06.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.168 -07 000000431 INF: FPGA: Recv ZSGSRD 29737
17-03-17 19:15:06.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.178 -07 000000480 INF: FPGA: Recv ZSGSRD 29726
17-03-17 19:15:06.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.188 -07 000000431 INF: FPGA: Recv ZSGSRD 29731
17-03-17 19:15:06.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.198 -07 000000478 INF: FPGA: Recv ZSGSRD 29722
17-03-17 19:15:06.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.208 -07 000000431 INF: FPGA: Recv ZSGSRD 29725
17-03-17 19:15:06.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.218 -07 000000478 INF: FPGA: Recv ZSGSRD 29730
17-03-17 19:15:06.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:15:06.228 -07 000000551 INF: FPGA: Recv ZPIEZORD 25410
17-03-17 19:15:06.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.238 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.377 V. Piezo Error = -9.5 V.
17-03-17 19:15:06.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29728 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29728 (-130.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29722 (-130.5 uncal um), Max = 29737 (-130.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:15:06.238 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29728, posNoise = 9, negNoise = 6
17-03-17 19:15:06.238 -07 000000610 INF: Z Motor: After move to -0.131298, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:15:06.238 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 108 ms (allowed 150 ms), total time = 1537 ms
17-03-17 19:15:06.238 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:15:06.288 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 19:15:06.288 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:15:06.288 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.131302330561405. ----------
17-03-17 19:15:06.288 -07 000000610 INF: Cycle	23	Tile	12	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:15:06.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28506, sync = True, waitForSettling = True)
17-03-17 19:15:06.288 -07 000000610 INF: Z Motor: Moving to -0.130492 mm, started at -0.131302 mm, distance = 0.81 um
17-03-17 19:15:06.288 -07 000000610 INF: FPGA: Xmit ZDACW 28506\n [Z Motor]
17-03-17 19:15:06.288 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:15:06.298 -07 000000610 INF: FPGA: 'ZDACW 28506' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:15:06.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:15:06.298 -07 000000012 INF: FPGA: Recv ZDACR 28506
17-03-17 19:15:06.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:15:06.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.458 -07 000000478 INF: FPGA: Recv ZSGSRD 29607
17-03-17 19:15:06.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.468 -07 000000551 INF: FPGA: Recv ZSGSRD 29603
17-03-17 19:15:06.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.478 -07 000000478 INF: FPGA: Recv ZSGSRD 29600
17-03-17 19:15:06.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.488 -07 000000012 INF: FPGA: Recv ZSGSRD 29598
17-03-17 19:15:06.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.498 -07 000000551 INF: FPGA: Recv ZSGSRD 29605
17-03-17 19:15:06.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.508 -07 000000478 INF: FPGA: Recv ZSGSRD 29604
17-03-17 19:15:06.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.518 -07 000000551 INF: FPGA: Recv ZSGSRD 29601
17-03-17 19:15:06.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.528 -07 000000476 INF: FPGA: Recv ZSGSRD 29601
17-03-17 19:15:06.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.538 -07 000000480 INF: FPGA: Recv ZSGSRD 29601
17-03-17 19:15:06.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:06.548 -07 000000476 INF: FPGA: Recv ZSGSRD 29602
17-03-17 19:15:06.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:15:06.558 -07 000000012 INF: FPGA: Recv ZPIEZORD 25274
17-03-17 19:15:06.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:06.568 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.350 V. Piezo Error = -9.5 V.
17-03-17 19:15:06.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29602 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29602 (-129.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29598 (-129.7 uncal um), Max = 29607 (-129.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:15:06.568 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29602, posNoise = 5, negNoise = 4
17-03-17 19:15:06.568 -07 000000610 INF: Z Motor: After move to -0.130492, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:15:06.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:15:06.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:15:06.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:15:06.568 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:15:06.568 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:15:06.568 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:15:06.568 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:15:06.568 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:15:06.568 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:15:06.568 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:15:06.568 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:15:06.568 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:15:06.568 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:15:06.578 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:15:06.578 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:15:06.578 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:15:06.578 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:15:06.578 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:15:06.578 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:15:06.588 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:15:06.588 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:15:06.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28682 150\n [Camera]
17-03-17 19:15:06.668 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:15:06.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:15:06.788 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:15:07.188 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:15:07.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:15:07.188 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:07.188 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:07.188 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:15:07.188 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:15:07.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:15:07.188 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:07.188 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:07.188 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 19:15:07.378 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28682 784
17-03-17 19:15:07.528 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:15:07.568 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:15:07.568 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:15:07.568 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:07.568 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:07.568 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:15:07.568 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:15:07.568 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:07.568 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:07.568 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:15:07.578 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:15:07.718 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:15:07.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:15:07.718 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:07.718 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:07.718 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 19:15:07.718 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:15:07.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:15:07.728 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:07.728 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:07.728 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1069092912, 0x0, 418435064) start.
17-03-17 19:15:07.908 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:15:07.908 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:15:07.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28682 150' command took 2 ms to send, 1318 ms to get response, and 1325 ms overall
17-03-17 19:15:07.908 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.130897
17-03-17 19:15:07.918 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13090 mm
17-03-17 19:15:07.918 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:15:07.918 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:15:07.918 -07 000000623 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 19:15:07.918 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:08.108 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:15:08.108 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:15:08.108 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:08.108 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1069092912, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 19:15:08.108 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:15:08.108 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:08.118 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:15:08.118 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:15:08.118 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:15:08.118 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:15:08.128 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 28594, sync = True, waitForSettling = False)
17-03-17 19:15:08.128 -07 000000476 INF: Z Motor: Moving to -0.130895 mm, started at -0.130493 mm, distance = -0.40 um
17-03-17 19:15:08.128 -07 000000476 INF: FPGA: Xmit ZDACW 28594\n [Z Motor]
17-03-17 19:15:08.128 -07 000000618 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:15:08.128 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:15:08.128 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 208 ms to get response, and 214 ms overall
17-03-17 19:15:08.128 -07 000000623 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:08.128 -07 000000623 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:15:08.128 -07 000000623 INF: Y Motor: Moving 1352 steps-30
17-03-17 19:15:08.138 -07 000000476 INF: FPGA: 'ZDACW 28594' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:15:08.138 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:15:08.138 -07 000000618 INF: FPGA: Recv ZDACR 28594
17-03-17 19:15:08.148 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:08.148 -07 000000476 INF: Z Motor: MoveAbsStepped took 15 ms (did NOT wait for settling yet))
17-03-17 19:15:08.148 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:15:08.518 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 19:15:08.518 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-17 19:15:08.558 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:08.558 -07 000000618 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:15:08.568 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:15:08.568 -07 000000623 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:08.568 -07 000000623 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:15:08.568 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.845 mm, average velocity = 2.172 mm/sec
17-03-17 19:15:08.918 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.024884,
17-03-17 19:15:09.518 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:09.518 -07 000000618 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:15:09.528 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:15:09.528 -07 000000623 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:09.548 -07 000000623 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:15:09.548 -07 000000623 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:15:09.548 -07 000000623 INF: Y Motor: Moved to 69.8638 after 1626 ms (table move)
17-03-17 19:15:09.548 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130895 mm (DAC = 28594)
17-03-17 19:15:09.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.548 -07 000000541 INF: FPGA: Recv ZSGSRD 29666
17-03-17 19:15:09.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:15:09.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.558 -07 000000618 INF: FPGA: Recv ZSGSRD 29665
17-03-17 19:15:09.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.568 -07 000000547 INF: FPGA: Recv ZSGSRD 29670
17-03-17 19:15:09.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.578 -07 000000623 INF: FPGA: Recv ZSGSRD 29667
17-03-17 19:15:09.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.588 -07 000000618 INF: FPGA: Recv ZSGSRD 29667
17-03-17 19:15:09.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.598 -07 000000623 INF: FPGA: Recv ZSGSRD 29663
17-03-17 19:15:09.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.608 -07 000000547 INF: FPGA: Recv ZSGSRD 29668
17-03-17 19:15:09.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.618 -07 000000476 INF: FPGA: Recv ZSGSRD 29656
17-03-17 19:15:09.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.628 -07 000000429 INF: FPGA: Recv ZSGSRD 29658
17-03-17 19:15:09.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.638 -07 000000541 INF: FPGA: Recv ZSGSRD 29669
17-03-17 19:15:09.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:15:09.648 -07 000000626 INF: FPGA: Recv ZPIEZORD 25355
17-03-17 19:15:09.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.658 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -9.5 V.
17-03-17 19:15:09.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29665 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29666 (-130.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29656 (-130.1 uncal um), Max = 29670 (-130.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:15:09.658 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29665, posNoise = 5, negNoise = 9
17-03-17 19:15:09.658 -07 000000610 INF: Z Motor: After move to -0.130895, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:15:09.658 -07 000000610 INF: Z Motor: Settle wait time = 1420 ms, measure time = 105 ms (allowed 150 ms), total time = 1525 ms
17-03-17 19:15:09.658 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:15:09.708 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1789 ms
17-03-17 19:15:09.708 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:15:09.708 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.130897605196474. ----------
17-03-17 19:15:09.708 -07 000000610 INF: Cycle	23	Tile	13	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:15:09.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28418, sync = True, waitForSettling = True)
17-03-17 19:15:09.708 -07 000000610 INF: Z Motor: Moving to -0.130089 mm, started at -0.130898 mm, distance = 0.81 um
17-03-17 19:15:09.708 -07 000000610 INF: FPGA: Xmit ZDACW 28418\n [Z Motor]
17-03-17 19:15:09.708 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:15:09.718 -07 000000610 INF: FPGA: 'ZDACW 28418' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:15:09.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:15:09.718 -07 000000626 INF: FPGA: Recv ZDACR 28418
17-03-17 19:15:09.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:15:09.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.878 -07 000000618 INF: FPGA: Recv ZSGSRD 29546
17-03-17 19:15:09.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:15:09.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.888 -07 000000626 INF: FPGA: Recv ZSGSRD 29542
17-03-17 19:15:09.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.898 -07 000000626 INF: FPGA: Recv ZSGSRD 29539
17-03-17 19:15:09.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.908 -07 000000626 INF: FPGA: Recv ZSGSRD 29537
17-03-17 19:15:09.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.918 -07 000000626 INF: FPGA: Recv ZSGSRD 29544
17-03-17 19:15:09.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.928 -07 000000618 INF: FPGA: Recv ZSGSRD 29536
17-03-17 19:15:09.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.938 -07 000000626 INF: FPGA: Recv ZSGSRD 29537
17-03-17 19:15:09.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.948 -07 000000626 INF: FPGA: Recv ZSGSRD 29539
17-03-17 19:15:09.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.958 -07 000000626 INF: FPGA: Recv ZSGSRD 29541
17-03-17 19:15:09.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:09.968 -07 000000626 INF: FPGA: Recv ZSGSRD 29545
17-03-17 19:15:09.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:09.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:15:09.998 -07 000000618 INF: FPGA: Recv ZPIEZORD 25202
17-03-17 19:15:10.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:15:10.008 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.336 V. Piezo Error = -9.5 V.
17-03-17 19:15:10.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29541 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29540 (-129.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29536 (-129.3 uncal um), Max = 29546 (-129.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:15:10.008 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29541, posNoise = 5, negNoise = 5
17-03-17 19:15:10.008 -07 000000610 INF: Z Motor: After move to -0.130089, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:15:10.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 296 ms)
17-03-17 19:15:10.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:15:10.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:15:10.008 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:15:10.008 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:15:10.008 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:15:10.008 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:15:10.008 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:15:10.008 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:15:10.008 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:15:10.008 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:15:10.008 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:15:10.008 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:15:10.018 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:15:10.018 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:15:10.018 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:15:10.018 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:15:10.028 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:15:10.028 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:15:10.028 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 19:15:10.028 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:15:10.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28594 150\n [Camera]
17-03-17 19:15:10.238 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:15:10.628 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:15:10.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:15:10.638 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:10.638 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:10.638 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1104515176, 0x0, 391868352) start.
17-03-17 19:15:10.638 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:15:10.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:15:10.638 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:10.758 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:10.758 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:15:11.018 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1104515176, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:15:11.018 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:15:11.018 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:11.018 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:11.018 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:15:11.028 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28594 784
17-03-17 19:15:11.028 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:15:11.128 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:15:11.128 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:15:11.128 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:11.138 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:15:11.138 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-17 19:15:11.168 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:15:11.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:15:11.168 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:11.168 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:15:11.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:15:11.168 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:11.178 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:11.178 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:15:11.178 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:11.178 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1069092912, 0x0, 418435064) start.
17-03-17 19:15:11.548 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:15:11.548 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:15:11.548 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:11.558 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:15:11.558 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:15:11.558 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1069092912, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:15:11.558 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:15:11.558 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:11.558 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:15:11.568 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:15:11.568 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:15:11.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28594 150' command took 2 ms to send, 1524 ms to get response, and 1537 ms overall
17-03-17 19:15:11.568 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:15:11.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:15:11.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.130101002890895. ------
17-03-17 19:15:11.578 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:15:11.578 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13644 mm
17-03-17 19:15:11.578 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:15:12.248 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:15:12.248 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:15:12.248 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 660 ms to get response, and 666 ms overall
17-03-17 19:15:12.248 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:15:12.248 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:15:12.248 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:15:12.248 -07 000000478 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 19:15:12.258 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:13.248 -07 000000480 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:15:13.248 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:15:13.248 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 980 ms to get response, and 998 ms overall
17-03-17 19:15:13.248 -07 000000478 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:13.248 -07 000000478 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:15:13.248 -07 000000478 INF: Y Motor: Moving 1342 steps-18
17-03-17 19:15:13.248 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:15:13.248 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 19:15:13.248 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29804, sync = True, waitForSettling = False)
17-03-17 19:15:13.248 -07 000000480 INF: Z Motor: Moving to -0.136434 mm, started at -0.130101 mm, distance = -6.33 um
17-03-17 19:15:13.258 -07 000000480 INF: FPGA: Xmit ZDACW 29804\n [Z Motor]
17-03-17 19:15:14.248 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:15:14.248 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:15:14.248 -07 000000480 INF: FPGA: 'ZDACW 29804' command took 0 ms to send, 981 ms to get response, and 999 ms overall
17-03-17 19:15:14.248 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:15:14.248 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 992 ms to get response, and 1000 ms overall
17-03-17 19:15:14.248 -07 000000608 INF: FPGA: Recv ZDACR 29804
17-03-17 19:15:14.258 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:15:14.258 -07 000000480 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-17 19:15:14.278 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:14.288 -07 000000480 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:15:14.288 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:15:14.288 -07 000000478 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:14.288 -07 000000478 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:15:14.288 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1001 ms, distance = 0.839 mm, average velocity = 0.838 mm/sec
17-03-17 19:15:14.558 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.007176,
17-03-17 19:15:15.238 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:15.238 -07 000000608 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:15:15.248 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:15:15.248 -07 000000478 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:15.268 -07 000000478 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:15:15.268 -07 000000478 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:15:15.268 -07 000000478 INF: Y Motor: Moved to 70.6895 after 3020 ms (table move)
17-03-17 19:15:15.268 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136434 mm (DAC = 29804)
17-03-17 19:15:15.268 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:15.268 -07 000000569 INF: FPGA: Recv ZSGSRD 30526
17-03-17 19:15:15.278 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:15:15.278 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:15.278 -07 000000478 INF: FPGA: Recv ZSGSRD 30522
17-03-17 19:15:15.288 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:15.288 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:15.288 -07 000000569 INF: FPGA: Recv ZSGSRD 30524
17-03-17 19:15:15.298 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:15.298 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:15.298 -07 000000478 INF: FPGA: Recv ZSGSRD 30533
17-03-17 19:15:15.308 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:15.308 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:15.308 -07 000000480 INF: FPGA: Recv ZSGSRD 30522
17-03-17 19:15:15.318 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:15.318 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:15.318 -07 000000561 INF: FPGA: Recv ZSGSRD 30525
17-03-17 19:15:15.328 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:15.328 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:15.328 -07 000000480 INF: FPGA: Recv ZSGSRD 30529
17-03-17 19:15:15.338 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:15.338 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:15.338 -07 000000512 INF: FPGA: Recv ZSGSRD 30529
17-03-17 19:15:15.348 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:15.358 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:15.358 -07 000000478 INF: FPGA: Recv ZSGSRD 30529
17-03-17 19:15:15.368 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:15:15.368 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:15.368 -07 000000012 INF: FPGA: Recv ZSGSRD 30523
17-03-17 19:15:15.378 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:15.388 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:15:15.388 -07 000000480 INF: FPGA: Recv ZPIEZORD 26511
17-03-17 19:15:15.398 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:15:15.398 -07 000000547 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.548 V. Piezo Error = -8.8 V.
17-03-17 19:15:15.398 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30526 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30526 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30522 (-135.6 uncal um), Max = 30533 (-135.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:15:15.398 -07 000000547 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30526, posNoise = 7, negNoise = 4
17-03-17 19:15:15.398 -07 000000547 INF: Z Motor: After move to -0.136434, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:15:15.398 -07 000000547 INF: Z Motor: Settle wait time = 2023 ms, measure time = 125 ms (allowed 150 ms), total time = 2148 ms
17-03-17 19:15:15.398 -07 000000547 INF: Z Motor: Waiting extra 25 ms after reading position to reach expected total of 150 ms
17-03-17 19:15:15.428 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3844 ms
17-03-17 19:15:15.428 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:15:15.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:15:15.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:15:15.428 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:15:15.428 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:15:15.428 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:15:15.428 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:15:15.428 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:15:15.428 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:15:15.428 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:15:15.438 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:15:15.448 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:15:15.448 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:15:15.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:15:15.498 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:15:15.698 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:15:15.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:15:15.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:15:15.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460015264, 0x0, 559484976) start.
17-03-17 19:15:15.738 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:15:15.738 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 19:15:15.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 19:15:15.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460015264, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:15:15.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:15.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:15:15.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:15:15.838 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:15:15.838 -07 000000476 INF: Autofocus start
17-03-17 19:15:15.838 -07 000000476 INF: MeasureProfile start
17-03-17 19:15:15.838 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:15:15.848 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:15:15.848 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:15:15.848 -07 000000476 INF: MeasureProfile done
17-03-17 19:15:15.848 -07 000000476 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:15:15.848 -07 000000476 INF: Autofocus finished
17-03-17 19:15:16.048 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:15:16.048 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:15:16.048 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.13642885185053. ----------
17-03-17 19:15:16.048 -07 000000610 INF: Cycle	23	Tile	14	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:15:16.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28312, sync = True, waitForSettling = True)
17-03-17 19:15:16.058 -07 000000610 INF: Z Motor: Moving to -0.129604 mm, started at -0.136429 mm, distance = 6.82 um
17-03-17 19:15:16.058 -07 000000610 INF: FPGA: Xmit ZDACW 28312\n [Z Motor]
17-03-17 19:15:16.058 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:15:16.068 -07 000000610 INF: FPGA: 'ZDACW 28312' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:16.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:15:16.068 -07 000000561 INF: FPGA: Recv ZDACR 28312
17-03-17 19:15:16.078 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:16.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:15:16.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:16.228 -07 000000480 INF: FPGA: Recv ZSGSRD 29465
17-03-17 19:15:16.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:15:16.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:16.238 -07 000000480 INF: FPGA: Recv ZSGSRD 29462
17-03-17 19:15:16.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:16.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:16.248 -07 000000561 INF: FPGA: Recv ZSGSRD 29467
17-03-17 19:15:16.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:16.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:16.258 -07 000000561 INF: FPGA: Recv ZSGSRD 29464
17-03-17 19:15:16.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:16.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:16.268 -07 000000480 INF: FPGA: Recv ZSGSRD 29466
17-03-17 19:15:16.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:16.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:16.278 -07 000000561 INF: FPGA: Recv ZSGSRD 29469
17-03-17 19:15:16.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:16.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:16.288 -07 000000512 INF: FPGA: Recv ZSGSRD 29463
17-03-17 19:15:16.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:16.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:16.298 -07 000000561 INF: FPGA: Recv ZSGSRD 29464
17-03-17 19:15:16.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:16.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:16.308 -07 000000608 INF: FPGA: Recv ZSGSRD 29458
17-03-17 19:15:16.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:16.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:16.318 -07 000000608 INF: FPGA: Recv ZSGSRD 29466
17-03-17 19:15:16.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:16.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:15:16.328 -07 000000608 INF: FPGA: Recv ZPIEZORD 25096
17-03-17 19:15:16.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:16.338 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -9.6 V.
17-03-17 19:15:16.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29464 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29464 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29458 (-128.8 uncal um), Max = 29469 (-128.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:15:16.338 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29464, posNoise = 5, negNoise = 6
17-03-17 19:15:16.338 -07 000000610 INF: Z Motor: After move to -0.129604, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:15:16.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:15:16.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:15:16.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:15:16.338 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:15:16.338 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:15:16.338 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:15:16.338 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:15:16.338 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:15:16.338 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:15:16.338 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:15:16.338 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:15:16.338 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:15:16.338 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:15:16.348 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:15:16.348 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:15:16.348 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:15:16.348 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:15:16.358 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:15:16.358 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:15:16.358 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:15:16.358 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:15:16.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28489 150\n [Camera]
17-03-17 19:15:16.558 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:15:16.668 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:15:16.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:15:16.958 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:15:16.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:15:16.958 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:16.958 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:16.958 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:15:16.968 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:15:16.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:15:16.968 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:17.078 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:17.078 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:15:17.158 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28489 784
17-03-17 19:15:17.308 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:15:17.348 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:15:17.348 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:15:17.348 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:17.348 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:17.348 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:15:17.458 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:15:17.458 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:15:17.458 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:17.458 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:17.468 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-17 19:15:17.498 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:15:17.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:15:17.498 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:17.498 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:15:17.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:15:17.498 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:17.498 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:17.498 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-17 19:15:17.498 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:17.498 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:15:17.688 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:15:17.688 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:15:17.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28489 150' command took 2 ms to send, 1314 ms to get response, and 1325 ms overall
17-03-17 19:15:17.688 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.130275
17-03-17 19:15:17.688 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13027 mm
17-03-17 19:15:17.688 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:15:17.688 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:15:17.688 -07 000000608 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-17 19:15:17.688 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:17.878 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:15:17.878 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:15:17.878 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:17.888 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:15:17.888 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:15:17.888 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:17.888 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:15:17.888 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:15:17.888 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:15:17.898 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:15:17.908 -07 000000476 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:15:17.908 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 219 ms to get response, and 220 ms overall
17-03-17 19:15:17.908 -07 000000608 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:17.908 -07 000000608 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:15:17.908 -07 000000608 INF: Y Motor: Moving 1349 steps-27
17-03-17 19:15:17.918 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 28458, sync = True, waitForSettling = False)
17-03-17 19:15:17.918 -07 000000569 INF: Z Motor: Moving to -0.130272 mm, started at -0.129606 mm, distance = -0.67 um
17-03-17 19:15:17.918 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:15:17.928 -07 000000569 INF: FPGA: Xmit ZDACW 28458\n [Z Motor]
17-03-17 19:15:17.928 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:15:17.938 -07 000000569 INF: FPGA: 'ZDACW 28458' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:15:17.938 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:15:17.938 -07 000000476 INF: FPGA: Recv ZDACR 28458
17-03-17 19:15:17.948 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:17.948 -07 000000569 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 19:15:18.288 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:15:18.288 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 19:15:18.328 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:18.328 -07 000000569 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:15:18.338 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:15:18.338 -07 000000608 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:18.338 -07 000000608 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:15:18.338 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.843 mm, average velocity = 2.231 mm/sec
17-03-17 19:15:19.288 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:19.288 -07 000000569 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:15:19.298 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.298 -07 000000608 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:19.318 -07 000000608 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:15:19.318 -07 000000608 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:15:19.318 -07 000000608 INF: Y Motor: Moved to 71.5200 after 1622 ms (table move)
17-03-17 19:15:19.318 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130272 mm (DAC = 28458)
17-03-17 19:15:19.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.318 -07 000000569 INF: FPGA: Recv ZSGSRD 29571
17-03-17 19:15:19.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:15:19.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.328 -07 000000476 INF: FPGA: Recv ZSGSRD 29560
17-03-17 19:15:19.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.338 -07 000000569 INF: FPGA: Recv ZSGSRD 29566
17-03-17 19:15:19.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.348 -07 000000476 INF: FPGA: Recv ZSGSRD 29568
17-03-17 19:15:19.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.358 -07 000000476 INF: FPGA: Recv ZSGSRD 29571
17-03-17 19:15:19.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.368 -07 000000608 INF: FPGA: Recv ZSGSRD 29572
17-03-17 19:15:19.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.378 -07 000000618 INF: FPGA: Recv ZSGSRD 29578
17-03-17 19:15:19.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.388 -07 000000608 INF: FPGA: Recv ZSGSRD 29570
17-03-17 19:15:19.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.398 -07 000000618 INF: FPGA: Recv ZSGSRD 29562
17-03-17 19:15:19.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.408 -07 000000476 INF: FPGA: Recv ZSGSRD 29559
17-03-17 19:15:19.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:15:19.418 -07 000000482 INF: FPGA: Recv ZPIEZORD 25277
17-03-17 19:15:19.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.428 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.342 V. Piezo Error = -9.4 V.
17-03-17 19:15:19.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29568 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29569 (-129.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29559 (-129.4 uncal um), Max = 29578 (-129.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:15:19.428 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29568, posNoise = 10, negNoise = 9
17-03-17 19:15:19.428 -07 000000610 INF: Z Motor: After move to -0.130272, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:15:19.428 -07 000000610 INF: Z Motor: Settle wait time = 1403 ms, measure time = 107 ms (allowed 150 ms), total time = 1510 ms
17-03-17 19:15:19.428 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:15:19.478 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1783 ms
17-03-17 19:15:19.478 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:15:19.478 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.130274456618723. ----------
17-03-17 19:15:19.478 -07 000000610 INF: Cycle	23	Tile	15	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:15:19.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28282, sync = True, waitForSettling = True)
17-03-17 19:15:19.478 -07 000000610 INF: Z Motor: Moving to -0.129467 mm, started at -0.130274 mm, distance = 0.81 um
17-03-17 19:15:19.478 -07 000000610 INF: FPGA: Xmit ZDACW 28282\n [Z Motor]
17-03-17 19:15:19.478 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:15:19.488 -07 000000610 INF: FPGA: 'ZDACW 28282' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:15:19.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:15:19.488 -07 000000608 INF: FPGA: Recv ZDACR 28282
17-03-17 19:15:19.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:15:19.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.648 -07 000000618 INF: FPGA: Recv ZSGSRD 29447
17-03-17 19:15:19.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:15:19.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.658 -07 000000569 INF: FPGA: Recv ZSGSRD 29442
17-03-17 19:15:19.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.668 -07 000000618 INF: FPGA: Recv ZSGSRD 29447
17-03-17 19:15:19.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.678 -07 000000569 INF: FPGA: Recv ZSGSRD 29442
17-03-17 19:15:19.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.688 -07 000000618 INF: FPGA: Recv ZSGSRD 29440
17-03-17 19:15:19.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.698 -07 000000476 INF: FPGA: Recv ZSGSRD 29447
17-03-17 19:15:19.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.708 -07 000000618 INF: FPGA: Recv ZSGSRD 29446
17-03-17 19:15:19.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.718 -07 000000476 INF: FPGA: Recv ZSGSRD 29441
17-03-17 19:15:19.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.728 -07 000000482 INF: FPGA: Recv ZSGSRD 29436
17-03-17 19:15:19.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:19.738 -07 000000608 INF: FPGA: Recv ZSGSRD 29442
17-03-17 19:15:19.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:15:19.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:15:19.748 -07 000000569 INF: FPGA: Recv ZPIEZORD 25106
17-03-17 19:15:19.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:19.758 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.316 V. Piezo Error = -9.5 V.
17-03-17 19:15:19.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29443 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29442 (-128.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29436 (-128.6 uncal um), Max = 29447 (-128.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:15:19.758 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29443, posNoise = 4, negNoise = 7
17-03-17 19:15:19.758 -07 000000610 INF: Z Motor: After move to -0.129467, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:15:19.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:15:19.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:15:19.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:15:19.758 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:15:19.758 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:15:19.758 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:15:19.758 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:15:19.758 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:15:19.758 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:15:19.758 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:15:19.758 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:15:19.758 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:15:19.758 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:15:19.758 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:15:19.768 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:15:19.768 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:15:19.768 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:15:19.778 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:15:19.778 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:15:19.778 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:15:19.778 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:15:19.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28458 150\n [Camera]
17-03-17 19:15:19.918 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.000345,
17-03-17 19:15:19.978 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:15:20.378 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:15:20.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:15:20.378 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:20.378 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:20.378 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 19:15:20.388 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:15:20.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:15:20.388 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:20.388 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:20.388 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 19:15:20.578 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28458 784
17-03-17 19:15:20.728 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:15:20.778 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:15:20.778 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:15:20.788 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:20.788 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 19:15:20.788 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:15:20.788 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:20.788 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:20.788 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:15:20.788 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:20.798 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:15:20.918 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:15:20.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:15:20.918 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:20.918 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:20.918 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1069092912, 0x0, 391868352) start.
17-03-17 19:15:20.918 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:15:20.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:15:20.918 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:20.918 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:20.918 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1104515176, 0x0, 418435064) start.
17-03-17 19:15:21.108 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:15:21.108 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:15:21.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28458 150' command took 3 ms to send, 1318 ms to get response, and 1329 ms overall
17-03-17 19:15:21.228 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.129480
17-03-17 19:15:21.228 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12948 mm
17-03-17 19:15:21.228 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:15:21.228 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:15:21.228 -07 000000482 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 19:15:21.228 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:21.318 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1069092912, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 19:15:21.318 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:15:21.318 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:21.318 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1104515176, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:15:21.318 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:15:21.318 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:21.328 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:21.328 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:15:21.328 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:21.338 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:15:21.338 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 28285, sync = True, waitForSettling = False)
17-03-17 19:15:21.338 -07 000000476 INF: Z Motor: Moving to -0.129480 mm, started at -0.129471 mm, distance = -0.01 um
17-03-17 19:15:21.338 -07 000000476 INF: FPGA: Xmit ZDACW 28285\n [Z Motor]
17-03-17 19:15:21.348 -07 000000618 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:15:21.348 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:15:21.348 -07 000000476 INF: FPGA: 'ZDACW 28285' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:15:21.348 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:15:21.348 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 110 ms to get response, and 113 ms overall
17-03-17 19:15:21.348 -07 000000482 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:21.348 -07 000000482 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:15:21.348 -07 000000482 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:15:21.348 -07 000000618 INF: FPGA: Recv ZDACR 28285
17-03-17 19:15:21.358 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:21.358 -07 000000476 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-17 19:15:21.358 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:15:21.668 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:15:21.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:15:21.728 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 19:15:21.728 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 19:15:21.768 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:21.768 -07 000000618 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:15:21.778 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:15:21.778 -07 000000482 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:21.778 -07 000000482 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:15:21.778 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.843 mm, average velocity = 2.183 mm/sec
17-03-17 19:15:22.728 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:22.728 -07 000000618 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:15:22.738 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:15:22.738 -07 000000482 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:22.758 -07 000000482 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:15:22.758 -07 000000482 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:15:22.758 -07 000000482 INF: Y Motor: Moved to 72.3501 after 1524 ms (table move)
17-03-17 19:15:22.758 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129480 mm (DAC = 28285)
17-03-17 19:15:22.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:22.758 -07 000000476 INF: FPGA: Recv ZSGSRD 29447
17-03-17 19:15:22.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:15:22.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:22.768 -07 000000482 INF: FPGA: Recv ZSGSRD 29443
17-03-17 19:15:22.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:22.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:22.778 -07 000000476 INF: FPGA: Recv ZSGSRD 29444
17-03-17 19:15:22.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:22.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:22.788 -07 000000618 INF: FPGA: Recv ZSGSRD 29447
17-03-17 19:15:22.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:22.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:22.798 -07 000000476 INF: FPGA: Recv ZSGSRD 29444
17-03-17 19:15:22.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:22.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:22.808 -07 000000476 INF: FPGA: Recv ZSGSRD 29448
17-03-17 19:15:22.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:22.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:22.818 -07 000000502 INF: FPGA: Recv ZSGSRD 29451
17-03-17 19:15:22.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:22.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:22.828 -07 000000476 INF: FPGA: Recv ZSGSRD 29439
17-03-17 19:15:22.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:22.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:22.838 -07 000000618 INF: FPGA: Recv ZSGSRD 29442
17-03-17 19:15:22.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:22.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:22.848 -07 000000476 INF: FPGA: Recv ZSGSRD 29443
17-03-17 19:15:22.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:22.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:15:22.858 -07 000000618 INF: FPGA: Recv ZPIEZORD 25126
17-03-17 19:15:22.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:22.868 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.316 V. Piezo Error = -9.5 V.
17-03-17 19:15:22.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29445 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29444 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29439 (-128.7 uncal um), Max = 29451 (-128.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:15:22.868 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29445, posNoise = 6, negNoise = 6
17-03-17 19:15:22.868 -07 000000610 INF: Z Motor: After move to -0.129480, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:15:22.868 -07 000000610 INF: Z Motor: Settle wait time = 1421 ms, measure time = 107 ms (allowed 150 ms), total time = 1528 ms
17-03-17 19:15:22.868 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:15:22.918 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1686 ms
17-03-17 19:15:22.918 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:15:22.918 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.129484278525286. ----------
17-03-17 19:15:22.918 -07 000000610 INF: Cycle	23	Tile	16	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:15:22.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28108, sync = True, waitForSettling = True)
17-03-17 19:15:22.918 -07 000000610 INF: Z Motor: Moving to -0.128670 mm, started at -0.129484 mm, distance = 0.81 um
17-03-17 19:15:22.918 -07 000000610 INF: FPGA: Xmit ZDACW 28108\n [Z Motor]
17-03-17 19:15:22.918 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:15:22.928 -07 000000610 INF: FPGA: 'ZDACW 28108' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:15:22.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:15:22.928 -07 000000502 INF: FPGA: Recv ZDACR 28108
17-03-17 19:15:22.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:22.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:15:23.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:23.088 -07 000000623 INF: FPGA: Recv ZSGSRD 29312
17-03-17 19:15:23.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:15:23.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:23.098 -07 000000476 INF: FPGA: Recv ZSGSRD 29328
17-03-17 19:15:23.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:23.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:23.108 -07 000000482 INF: FPGA: Recv ZSGSRD 29313
17-03-17 19:15:23.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:23.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:23.118 -07 000000623 INF: FPGA: Recv ZSGSRD 29319
17-03-17 19:15:23.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:23.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:23.128 -07 000000476 INF: FPGA: Recv ZSGSRD 29323
17-03-17 19:15:23.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:23.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:23.138 -07 000000502 INF: FPGA: Recv ZSGSRD 29316
17-03-17 19:15:23.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:23.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:23.148 -07 000000482 INF: FPGA: Recv ZSGSRD 29320
17-03-17 19:15:23.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:23.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:23.158 -07 000000623 INF: FPGA: Recv ZSGSRD 29317
17-03-17 19:15:23.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:23.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:23.168 -07 000000476 INF: FPGA: Recv ZSGSRD 29321
17-03-17 19:15:23.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:23.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:23.178 -07 000000502 INF: FPGA: Recv ZSGSRD 29320
17-03-17 19:15:23.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:23.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:15:23.188 -07 000000476 INF: FPGA: Recv ZPIEZORD 24979
17-03-17 19:15:23.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:23.198 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.289 V. Piezo Error = -9.5 V.
17-03-17 19:15:23.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29319 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29320 (-127.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29312 (-127.9 uncal um), Max = 29328 (-128.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:15:23.198 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29319, posNoise = 9, negNoise = 7
17-03-17 19:15:23.198 -07 000000610 INF: Z Motor: After move to -0.128670, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:15:23.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:15:23.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:15:23.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:15:23.198 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:15:23.198 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:15:23.198 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:15:23.198 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:15:23.198 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:15:23.198 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:15:23.198 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:15:23.198 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:15:23.198 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:15:23.198 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:15:23.198 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:15:23.198 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:15:23.198 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:15:23.198 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:15:23.208 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:15:23.208 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:15:23.218 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 19:15:23.218 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:15:23.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28285 150\n [Camera]
17-03-17 19:15:23.418 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:15:23.818 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:15:23.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:15:23.818 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:23.818 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:15:23.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:15:23.818 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:23.818 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:23.818 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 591925008, 0x0, 391868352) start.
17-03-17 19:15:23.828 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:23.828 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:15:24.008 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28285 784
17-03-17 19:15:24.158 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:15:24.198 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:15:24.198 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:15:24.198 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:24.198 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 591925008, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:15:24.198 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:15:24.198 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:24.208 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:15:24.208 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:15:24.208 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:15:24.208 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:15:24.348 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:15:24.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:15:24.348 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:24.348 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:15:24.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:15:24.358 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:24.358 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:24.358 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:15:24.358 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:24.358 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:15:24.538 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:15:24.538 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:15:24.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28285 150' command took 2 ms to send, 1318 ms to get response, and 1325 ms overall
17-03-17 19:15:24.548 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.129239
17-03-17 19:15:24.548 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12924 mm
17-03-17 19:15:24.548 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:15:24.548 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:15:24.548 -07 000000626 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 19:15:24.548 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:24.548 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 28232, sync = True, waitForSettling = False)
17-03-17 19:15:24.548 -07 000000012 INF: Z Motor: Moving to -0.129238 mm, started at -0.128675 mm, distance = -0.56 um
17-03-17 19:15:24.548 -07 000000618 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:15:24.558 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:15:24.558 -07 000000626 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:24.558 -07 000000626 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:15:24.558 -07 000000626 INF: Y Motor: Moving 1348 steps-26
17-03-17 19:15:24.558 -07 000000012 INF: FPGA: Xmit ZDACW 28232\n [Z Motor]
17-03-17 19:15:24.558 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:15:24.568 -07 000000012 INF: FPGA: 'ZDACW 28232' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:15:24.568 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:15:24.578 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:15:24.578 -07 000000502 INF: FPGA: Recv ZDACR 28232
17-03-17 19:15:24.588 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:15:24.588 -07 000000012 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 19:15:24.728 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:15:24.728 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:15:24.728 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:24.738 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:15:24.738 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:15:24.738 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:24.738 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:24.738 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:24.738 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:15:24.738 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:15:24.938 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 19:15:24.938 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:15:24.978 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:24.978 -07 000000502 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:15:24.988 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:15:24.988 -07 000000626 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:24.988 -07 000000626 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 19:15:24.988 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.171 mm/sec
17-03-17 19:15:25.278 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 4.009895,
17-03-17 19:15:25.938 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:25.938 -07 000000482 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:15:25.948 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:15:25.948 -07 000000626 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:25.968 -07 000000626 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:15:25.968 -07 000000626 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:15:25.968 -07 000000626 INF: Y Motor: Moved to 73.1768 after 1417 ms (table move)
17-03-17 19:15:25.968 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129238 mm (DAC = 28232)
17-03-17 19:15:25.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:25.968 -07 000000626 INF: FPGA: Recv ZSGSRD 29408
17-03-17 19:15:25.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:15:25.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:25.978 -07 000000626 INF: FPGA: Recv ZSGSRD 29401
17-03-17 19:15:25.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:25.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:25.988 -07 000000626 INF: FPGA: Recv ZSGSRD 29396
17-03-17 19:15:25.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:25.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:25.998 -07 000000482 INF: FPGA: Recv ZSGSRD 29407
17-03-17 19:15:26.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:26.008 -07 000000626 INF: FPGA: Recv ZSGSRD 29410
17-03-17 19:15:26.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:26.018 -07 000000429 INF: FPGA: Recv ZSGSRD 29414
17-03-17 19:15:26.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:26.028 -07 000000429 INF: FPGA: Recv ZSGSRD 29409
17-03-17 19:15:26.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:26.038 -07 000000429 INF: FPGA: Recv ZSGSRD 29408
17-03-17 19:15:26.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:26.048 -07 000000626 INF: FPGA: Recv ZSGSRD 29406
17-03-17 19:15:26.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:26.058 -07 000000482 INF: FPGA: Recv ZSGSRD 29401
17-03-17 19:15:26.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:15:26.068 -07 000000626 INF: FPGA: Recv ZPIEZORD 25127
17-03-17 19:15:26.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.078 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.308 V. Piezo Error = -9.4 V.
17-03-17 19:15:26.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29406 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29408 (-128.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29396 (-128.4 uncal um), Max = 29414 (-128.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:15:26.078 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29406, posNoise = 8, negNoise = 10
17-03-17 19:15:26.078 -07 000000610 INF: Z Motor: After move to -0.129238, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:15:26.078 -07 000000610 INF: Z Motor: Settle wait time = 1419 ms, measure time = 107 ms (allowed 150 ms), total time = 1526 ms
17-03-17 19:15:26.078 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:15:26.128 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1578 ms
17-03-17 19:15:26.128 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:15:26.128 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.129233734251758. ----------
17-03-17 19:15:26.128 -07 000000610 INF: Cycle	23	Tile	17	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:15:26.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28055, sync = True, waitForSettling = True)
17-03-17 19:15:26.128 -07 000000610 INF: Z Motor: Moving to -0.128428 mm, started at -0.129234 mm, distance = 0.81 um
17-03-17 19:15:26.148 -07 000000610 INF: FPGA: Xmit ZDACW 28055\n [Z Motor]
17-03-17 19:15:26.148 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:15:26.158 -07 000000610 INF: FPGA: 'ZDACW 28055' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:15:26.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:15:26.158 -07 000000626 INF: FPGA: Recv ZDACR 28055
17-03-17 19:15:26.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:15:26.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:26.318 -07 000000561 INF: FPGA: Recv ZSGSRD 29284
17-03-17 19:15:26.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:15:26.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:26.328 -07 000000482 INF: FPGA: Recv ZSGSRD 29285
17-03-17 19:15:26.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:26.338 -07 000000561 INF: FPGA: Recv ZSGSRD 29285
17-03-17 19:15:26.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:26.348 -07 000000429 INF: FPGA: Recv ZSGSRD 29284
17-03-17 19:15:26.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:26.358 -07 000000561 INF: FPGA: Recv ZSGSRD 29279
17-03-17 19:15:26.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:26.368 -07 000000482 INF: FPGA: Recv ZSGSRD 29283
17-03-17 19:15:26.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:26.378 -07 000000626 INF: FPGA: Recv ZSGSRD 29279
17-03-17 19:15:26.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:26.388 -07 000000482 INF: FPGA: Recv ZSGSRD 29278
17-03-17 19:15:26.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:26.398 -07 000000626 INF: FPGA: Recv ZSGSRD 29285
17-03-17 19:15:26.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:26.408 -07 000000561 INF: FPGA: Recv ZSGSRD 29283
17-03-17 19:15:26.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:15:26.418 -07 000000547 INF: FPGA: Recv ZPIEZORD 24946
17-03-17 19:15:26.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:26.428 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.281 V. Piezo Error = -9.5 V.
17-03-17 19:15:26.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29282 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29284 (-127.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29278 (-127.6 uncal um), Max = 29285 (-127.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:15:26.428 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29282, posNoise = 3, negNoise = 4
17-03-17 19:15:26.428 -07 000000610 INF: Z Motor: After move to -0.128428, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:15:26.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 292 ms)
17-03-17 19:15:26.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:15:26.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:15:26.428 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:15:26.428 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:15:26.428 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:15:26.428 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:15:26.428 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:15:26.428 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:15:26.428 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:15:26.428 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:15:26.428 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:15:26.428 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:15:26.438 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:15:26.438 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:15:26.438 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:15:26.438 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:15:26.448 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:15:26.448 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:15:26.448 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:15:26.448 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:15:26.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28232 150\n [Camera]
17-03-17 19:15:26.648 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:15:26.668 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:15:26.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:15:27.048 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:15:27.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:15:27.048 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:27.058 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:27.058 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 19:15:27.058 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:15:27.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:15:27.058 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:27.058 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:27.058 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:15:27.248 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28232 784
17-03-17 19:15:27.398 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:15:27.428 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:15:27.428 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:15:27.428 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:27.428 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:15:27.428 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:15:27.428 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:27.438 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:15:27.438 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:15:27.438 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:15:27.448 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:15:27.588 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:15:27.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:15:27.588 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:27.588 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:27.588 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 19:15:27.588 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:15:27.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:15:27.588 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:27.588 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:27.588 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1139937440, 0x0, 418435064) start.
17-03-17 19:15:27.778 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:15:27.778 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:15:27.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28232 150' command took 2 ms to send, 1315 ms to get response, and 1325 ms overall
17-03-17 19:15:27.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:15:27.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.128437131946179. ------
17-03-17 19:15:27.788 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13487 mm
17-03-17 19:15:27.788 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:15:27.788 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:15:27.898 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:15:27.898 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 112 ms overall
17-03-17 19:15:27.898 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:15:27.898 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:15:27.898 -07 000000608 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 19:15:27.898 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29462, sync = True, waitForSettling = False)
17-03-17 19:15:27.898 -07 000000480 INF: Z Motor: Moving to -0.134868 mm, started at -0.128437 mm, distance = -6.43 um
17-03-17 19:15:27.908 -07 000000480 INF: FPGA: Xmit ZDACW 29462\n [Z Motor]
17-03-17 19:15:27.908 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:15:27.918 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:27.918 -07 000000480 INF: FPGA: 'ZDACW 29462' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:15:27.918 -07 000000482 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:15:27.928 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:15:27.928 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:15:27.928 -07 000000608 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:27.928 -07 000000608 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:15:27.928 -07 000000608 INF: Y Motor: Moving 1353 steps-32
17-03-17 19:15:27.928 -07 000000626 INF: FPGA: Recv ZDACR 29462
17-03-17 19:15:27.938 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:15:27.938 -07 000000480 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 19:15:27.938 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:15:27.978 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:15:27.978 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:15:27.978 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:27.988 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:15:27.988 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:15:27.988 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1139937440, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 19:15:27.998 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:15:27.998 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:27.998 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:15:28.008 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 19:15:28.098 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:15:28.098 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:15:28.308 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:15:28.318 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 389 ms overall
17-03-17 19:15:28.338 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:28.348 -07 000000547 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:15:28.348 -07 000000608 INF: FPGA: 'YRDPOS' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:15:28.348 -07 000000608 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:28.348 -07 000000608 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:15:28.348 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.846 mm, average velocity = 2.174 mm/sec
17-03-17 19:15:29.298 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:29.298 -07 000000551 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:15:29.308 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:15:29.308 -07 000000608 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:29.318 -07 000000608 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:15:29.318 -07 000000608 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:15:29.318 -07 000000608 INF: Y Motor: Moved to 74.0088 after 1421 ms (table move)
17-03-17 19:15:29.318 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134868 mm (DAC = 29462)
17-03-17 19:15:29.318 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:29.328 -07 000000547 INF: FPGA: Recv ZSGSRD 30281
17-03-17 19:15:29.328 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 19:15:29.328 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:29.328 -07 000000547 INF: FPGA: Recv ZSGSRD 30287
17-03-17 19:15:29.338 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:15:29.338 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:29.338 -07 000000547 INF: FPGA: Recv ZSGSRD 30282
17-03-17 19:15:29.348 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:29.348 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:29.348 -07 000000569 INF: FPGA: Recv ZSGSRD 30280
17-03-17 19:15:29.358 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:29.358 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:29.358 -07 000000569 INF: FPGA: Recv ZSGSRD 30289
17-03-17 19:15:29.368 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:29.368 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:29.368 -07 000000569 INF: FPGA: Recv ZSGSRD 30284
17-03-17 19:15:29.378 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:29.378 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:29.378 -07 000000569 INF: FPGA: Recv ZSGSRD 30286
17-03-17 19:15:29.388 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:29.388 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:29.388 -07 000000569 INF: FPGA: Recv ZSGSRD 30289
17-03-17 19:15:29.398 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:29.398 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:29.398 -07 000000547 INF: FPGA: Recv ZSGSRD 30280
17-03-17 19:15:29.408 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:29.408 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:29.408 -07 000000547 INF: FPGA: Recv ZSGSRD 30283
17-03-17 19:15:29.418 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:29.418 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:15:29.418 -07 000000569 INF: FPGA: Recv ZPIEZORD 26280
17-03-17 19:15:29.428 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:29.428 -07 000000478 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.496 V. Piezo Error = -8.8 V.
17-03-17 19:15:29.428 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30284 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30284 (-134.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30280 (-134.1 uncal um), Max = 30289 (-134.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:15:29.428 -07 000000478 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30284, posNoise = 5, negNoise = 4
17-03-17 19:15:29.428 -07 000000478 INF: Z Motor: After move to -0.134868, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:15:29.428 -07 000000478 INF: Z Motor: Settle wait time = 1424 ms, measure time = 101 ms (allowed 150 ms), total time = 1525 ms
17-03-17 19:15:29.428 -07 000000478 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 19:15:29.478 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1689 ms
17-03-17 19:15:29.478 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:15:29.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:15:29.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:15:29.478 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:15:29.478 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:15:29.478 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:15:29.478 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:15:29.488 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:15:29.488 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:15:29.488 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:15:29.488 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:15:29.498 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:15:29.498 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:15:29.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:15:29.548 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:15:29.748 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:15:29.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:15:29.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:15:29.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:15:29.788 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:15:29.788 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 19:15:29.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 288 ms overall
17-03-17 19:15:29.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 19:15:29.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:29.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:15:29.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 19:15:29.888 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:15:29.888 -07 000000478 INF: Autofocus start
17-03-17 19:15:29.888 -07 000000478 INF: MeasureProfile start
17-03-17 19:15:29.888 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:15:29.898 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:15:29.898 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:15:29.908 -07 000000478 INF: MeasureProfile done
17-03-17 19:15:29.908 -07 000000478 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:15:29.908 -07 000000478 INF: Autofocus finished
17-03-17 19:15:30.098 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:15:30.098 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:15:30.098 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.134874192512224. ----------
17-03-17 19:15:30.098 -07 000000610 INF: Cycle	23	Tile	18	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:15:30.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27986, sync = True, waitForSettling = True)
17-03-17 19:15:30.108 -07 000000610 INF: Z Motor: Moving to -0.128112 mm, started at -0.134874 mm, distance = 6.76 um
17-03-17 19:15:30.108 -07 000000610 INF: FPGA: Xmit ZDACW 27986\n [Z Motor]
17-03-17 19:15:30.108 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:15:30.118 -07 000000610 INF: FPGA: 'ZDACW 27986' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:15:30.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:15:30.118 -07 000000551 INF: FPGA: Recv ZDACR 27986
17-03-17 19:15:30.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:30.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:15:30.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:30.278 -07 000000478 INF: FPGA: Recv ZSGSRD 29229
17-03-17 19:15:30.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:15:30.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:30.288 -07 000000478 INF: FPGA: Recv ZSGSRD 29237
17-03-17 19:15:30.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:30.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:30.298 -07 000000478 INF: FPGA: Recv ZSGSRD 29232
17-03-17 19:15:30.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:30.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:30.308 -07 000000478 INF: FPGA: Recv ZSGSRD 29228
17-03-17 19:15:30.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:30.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:30.328 -07 000000569 INF: FPGA: Recv ZSGSRD 29235
17-03-17 19:15:30.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:15:30.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:30.338 -07 000000551 INF: FPGA: Recv ZSGSRD 29232
17-03-17 19:15:30.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:30.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:30.348 -07 000000478 INF: FPGA: Recv ZSGSRD 29232
17-03-17 19:15:30.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:30.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:30.358 -07 000000551 INF: FPGA: Recv ZSGSRD 29231
17-03-17 19:15:30.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:30.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:30.368 -07 000000569 INF: FPGA: Recv ZSGSRD 29233
17-03-17 19:15:30.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:30.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:30.378 -07 000000478 INF: FPGA: Recv ZSGSRD 29235
17-03-17 19:15:30.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:30.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:15:30.388 -07 000000012 INF: FPGA: Recv ZPIEZORD 24909
17-03-17 19:15:30.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:30.398 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.270 V. Piezo Error = -9.5 V.
17-03-17 19:15:30.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29232 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29232 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29228 (-127.3 uncal um), Max = 29237 (-127.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:15:30.398 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29232, posNoise = 5, negNoise = 4
17-03-17 19:15:30.398 -07 000000610 INF: Z Motor: After move to -0.128112, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:15:30.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 19:15:30.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:15:30.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:15:30.398 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:15:30.398 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:15:30.398 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:15:30.398 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:15:30.398 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:15:30.398 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:15:30.398 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:15:30.398 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:15:30.398 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:15:30.398 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:15:30.398 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:15:30.398 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:15:30.408 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:15:30.408 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:15:30.408 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:15:30.408 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:15:30.418 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:15:30.418 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:15:30.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28163 150\n [Camera]
17-03-17 19:15:30.618 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:15:30.638 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.996267,
17-03-17 19:15:31.018 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:15:31.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:15:31.018 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:31.018 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:15:31.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:15:31.018 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:31.018 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:31.028 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:15:31.028 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:31.028 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:15:31.208 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28163 785
17-03-17 19:15:31.358 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:15:31.398 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 19:15:31.398 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 19:15:31.398 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:31.398 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:15:31.398 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:15:31.398 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:31.398 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:15:31.398 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:15:31.408 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:15:31.408 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:15:31.548 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:15:31.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:15:31.548 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:31.558 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:15:31.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:15:31.558 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:31.558 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:31.558 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 19:15:31.568 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:31.568 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 19:15:31.668 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:15:31.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 22. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:15:31.738 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:15:31.748 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:15:31.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28163 150' command took 2 ms to send, 1320 ms to get response, and 1326 ms overall
17-03-17 19:15:31.748 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.128418
17-03-17 19:15:31.748 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.12842 mm
17-03-17 19:15:31.748 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:15:31.748 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:15:31.748 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 28053, sync = True, waitForSettling = False)
17-03-17 19:15:31.748 -07 000000502 INF: Z Motor: Moving to -0.128418 mm, started at -0.128116 mm, distance = -0.30 um
17-03-17 19:15:31.748 -07 000000502 INF: FPGA: Xmit ZDACW 28053\n [Z Motor]
17-03-17 19:15:31.748 -07 000000551 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 19:15:31.748 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:15:31.758 -07 000000502 INF: FPGA: 'ZDACW 28053' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:15:31.758 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:31.758 -07 000000623 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:15:31.768 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:15:31.768 -07 000000551 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:31.768 -07 000000551 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:15:31.768 -07 000000551 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:15:31.768 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:15:31.768 -07 000000623 INF: FPGA: Recv ZDACR 28053
17-03-17 19:15:31.778 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:15:31.778 -07 000000502 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 19:15:31.778 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:15:31.958 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:15:31.958 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:15:31.968 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:31.968 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 19:15:31.968 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:15:31.968 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:31.968 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:15:31.968 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 19:15:31.968 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:15:31.978 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 19:15:32.148 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:15:32.148 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:15:32.178 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:32.178 -07 000000502 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:15:32.188 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:32.188 -07 000000551 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:32.188 -07 000000551 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 19:15:32.188 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.175 mm/sec
17-03-17 19:15:33.138 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:33.138 -07 000000618 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:15:33.148 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:15:33.148 -07 000000551 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:33.158 -07 000000551 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:15:33.158 -07 000000551 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:15:33.158 -07 000000551 INF: Y Motor: Moved to 74.8330 after 1408 ms (table move)
17-03-17 19:15:33.158 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128418 mm (DAC = 28053)
17-03-17 19:15:33.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.168 -07 000000502 INF: FPGA: Recv ZSGSRD 29276
17-03-17 19:15:33.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:15:33.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.168 -07 000000569 INF: FPGA: Recv ZSGSRD 29284
17-03-17 19:15:33.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.178 -07 000000012 INF: FPGA: Recv ZSGSRD 29275
17-03-17 19:15:33.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.188 -07 000000623 INF: FPGA: Recv ZSGSRD 29273
17-03-17 19:15:33.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.198 -07 000000502 INF: FPGA: Recv ZSGSRD 29277
17-03-17 19:15:33.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.208 -07 000000569 INF: FPGA: Recv ZSGSRD 29282
17-03-17 19:15:33.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.218 -07 000000431 INF: FPGA: Recv ZSGSRD 29287
17-03-17 19:15:33.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.228 -07 000000478 INF: FPGA: Recv ZSGSRD 29280
17-03-17 19:15:33.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.238 -07 000000431 INF: FPGA: Recv ZSGSRD 29284
17-03-17 19:15:33.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.248 -07 000000502 INF: FPGA: Recv ZSGSRD 29287
17-03-17 19:15:33.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:15:33.258 -07 000000431 INF: FPGA: Recv ZPIEZORD 24999
17-03-17 19:15:33.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.268 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.281 V. Piezo Error = -9.4 V.
17-03-17 19:15:33.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29280 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29281 (-127.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29273 (-127.6 uncal um), Max = 29287 (-127.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:15:33.268 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29280, posNoise = 7, negNoise = 7
17-03-17 19:15:33.268 -07 000000610 INF: Z Motor: After move to -0.128418, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:15:33.268 -07 000000610 INF: Z Motor: Settle wait time = 1410 ms, measure time = 103 ms (allowed 150 ms), total time = 1513 ms
17-03-17 19:15:33.268 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:15:33.318 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1565 ms
17-03-17 19:15:33.318 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:15:33.318 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.128424283521896. ----------
17-03-17 19:15:33.318 -07 000000610 INF: Cycle	23	Tile	19	Exposure Settings		A	399	G	192	T	192	C	399
17-03-17 19:15:33.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27876, sync = True, waitForSettling = True)
17-03-17 19:15:33.318 -07 000000610 INF: Z Motor: Moving to -0.127608 mm, started at -0.128424 mm, distance = 0.82 um
17-03-17 19:15:33.318 -07 000000610 INF: FPGA: Xmit ZDACW 27876\n [Z Motor]
17-03-17 19:15:33.318 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:15:33.328 -07 000000610 INF: FPGA: 'ZDACW 27876' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:15:33.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:15:33.328 -07 000000478 INF: FPGA: Recv ZDACR 27876
17-03-17 19:15:33.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:15:33.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.488 -07 000000502 INF: FPGA: Recv ZSGSRD 29160
17-03-17 19:15:33.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:15:33.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.498 -07 000000431 INF: FPGA: Recv ZSGSRD 29153
17-03-17 19:15:33.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.508 -07 000000478 INF: FPGA: Recv ZSGSRD 29153
17-03-17 19:15:33.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.518 -07 000000431 INF: FPGA: Recv ZSGSRD 29155
17-03-17 19:15:33.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.528 -07 000000502 INF: FPGA: Recv ZSGSRD 29154
17-03-17 19:15:33.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.538 -07 000000502 INF: FPGA: Recv ZSGSRD 29158
17-03-17 19:15:33.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.548 -07 000000431 INF: FPGA: Recv ZSGSRD 29158
17-03-17 19:15:33.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.558 -07 000000431 INF: FPGA: Recv ZSGSRD 29156
17-03-17 19:15:33.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.568 -07 000000431 INF: FPGA: Recv ZSGSRD 29148
17-03-17 19:15:33.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:15:33.578 -07 000000478 INF: FPGA: Recv ZSGSRD 29149
17-03-17 19:15:33.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:15:33.588 -07 000000478 INF: FPGA: Recv ZPIEZORD 24855
17-03-17 19:15:33.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:33.598 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.254 V. Piezo Error = -9.4 V.
17-03-17 19:15:33.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29154 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29154 (-126.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29148 (-126.8 uncal um), Max = 29160 (-126.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:15:33.598 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29154, posNoise = 6, negNoise = 6
17-03-17 19:15:33.598 -07 000000610 INF: Z Motor: After move to -0.127608, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:15:33.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:15:33.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:15:33.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:15:33.598 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:15:33.598 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:15:33.598 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:15:33.598 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:15:33.598 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:15:33.598 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:15:33.598 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:15:33.598 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:15:33.598 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:15:33.598 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:15:33.608 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:15:33.608 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:15:33.608 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:15:33.608 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:15:33.618 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:15:33.618 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:15:33.618 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:15:33.618 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:15:33.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28053 150\n [Camera]
17-03-17 19:15:33.818 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:15:34.218 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 19:15:34.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 19:15:34.228 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 19:15:34.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 19:15:34.228 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:34.228 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:34.348 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:34.348 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1069092912, 0x0, 391868352) start.
17-03-17 19:15:34.358 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:34.358 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:15:34.418 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28053 787
17-03-17 19:15:34.558 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:15:34.728 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1069092912, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:15:34.728 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:15:34.728 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:34.738 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:15:34.738 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:15:34.738 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:34.738 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:34.738 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 19:15:34.738 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:34.748 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-17 19:15:34.758 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:15:34.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:15:34.758 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:15:34.758 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:15:34.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:15:34.758 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:15:34.758 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:15:34.758 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:15:34.768 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:15:34.768 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:15:34.948 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:15:34.948 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:15:34.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28053 150' command took 2 ms to send, 1314 ms to get response, and 1325 ms overall
17-03-17 19:15:35.138 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:15:35.138 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:15:35.138 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:35.138 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:15:35.138 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:15:35.138 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:15:35.148 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:15:35.148 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:15:35.148 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:15:35.148 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:15:35.148 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:15:35.188 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 19:15:35.188 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:15:35.228 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 19:15:35.238 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 19:15:35.238 -07 000000610 INF: Imaging Cycle 23: ScanTilesCommand Cycle 23 time end. Duration was 146722 ms.
17-03-17 19:15:35.238 -07 000000610 INF: =================== Cycle #23 ===================
17-03-17 19:15:35.238 -07 000000610 INF: ===================  ===================
17-03-17 19:15:35.238 -07 000000431 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:15:35.248 -07 000000541 INF: FPGA: Recv EXLED1ADCR 27
17-03-17 19:15:35.258 -07 000000431 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 10 ms to get response, and 12 ms overall
17-03-17 19:15:35.258 -07 000000431 INF: GreenLED: Using Green data: Photodiode ADC 27 --> 0.0 mW (old method), or 2.0 mW (new method). Difference = 2.0 mW
17-03-17 19:15:35.258 -07 000000431 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 23, FrontChillerTemperature: 3.996267, FrontChillerHeatSinkTemperature: 0.278813, AmbientTemperature: 18.92256, FlowCellCompartmentTemperature: 21.99399, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.79824, GreenLEDSensorTemperature: 24.82684, PhotodiodePowerAdcGreen: 27, PhotodiodePowerMwGreen: 2.018235
17-03-17 19:15:35.258 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.