17-03-17 19:15:35.318 -07 000000610 INF: =================== Cycle #24 ===================
17-03-17 19:15:35.318 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 19:15:35.318 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-17 19:15:35.318 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:35.318 -07 000000626 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:15:35.328 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:15:35.328 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:35.328 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 19:15:35.328 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 19:15:35.328 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 19:15:35.438 -07 000000431 INF: FPGA: Recv YMVTO 154377 870
17-03-17 19:15:35.438 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 117 ms overall
17-03-17 19:15:35.438 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 19:15:35.438 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 870 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 19:15:35.438 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 117 ms, distance = 0.548 mm, average velocity = 4.680 mm/sec
17-03-17 19:15:35.998 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.978563,
17-03-17 19:15:36.668 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:15:36.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=258, R2=275, Total=533. Warn if over 250 bubbles per interval.
17-03-17 19:15:38.438 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:15:38.438 -07 000000482 INF: FPGA: Recv YRDPOS 154379
17-03-17 19:15:38.448 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:15:38.448 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:15:38.458 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:15:38.458 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 19:15:38.458 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3143 ms
17-03-17 19:15:38.468 -07 000000610 INF: =================== Cycle #24, Flow Cell Temp 60° ===================
17-03-17 19:15:38.468 -07 000000610 INF: =================== Cycle #24, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 19:15:38.468 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 19:15:38.468 -07 000000482 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:15:38.478 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:15:38.478 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:15:38.478 -07 000000482 INF: FPGA: Recv TEC2EN 
17-03-17 19:15:38.488 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:15:38.488 -07 000000610 INF: =================== Cycle #24, Flow Cell Temp 60° ===================
17-03-17 19:15:38.488 -07 000000610 INF: =================== Cycle #24 ===================
17-03-17 19:15:38.488 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:15:38.488 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:15:38.518 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:15:38.518 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 19:15:38.518 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:15:38.818 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:15:38.838 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:15:38.838 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:15:38.888 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:15:38.908 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:15:38.908 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:15:39.008 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3) ===================
17-03-17 19:15:39.008 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:15:39.058 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:15:39.088 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:15:39.088 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:15:39.088 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:15:39.218 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:15:39.258 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:15:41.358 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.966297,
17-03-17 19:15:41.668 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 19:15:41.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=260, R2=276, Total=536. Warn if over 250 bubbles per interval.
17-03-17 19:15:42.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:15:42.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:15:42.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:15:42.868 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:15:43.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:15:43.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:15:43.318 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:15:43.318 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3) ===================
17-03-17 19:15:43.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:15:43.478 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:15:43.478 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:15:43.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:15:43.638 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:15:43.638 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:15:43.638 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:15:43.768 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:15:43.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:15:44.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:15:44.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:15:44.258 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:15:44.258 -07 000000610 INF: =================== Cycle #24 ===================
17-03-17 19:15:45.478 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 19:15:45.478 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 19:15:45.478 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:15:45.498 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:15:45.498 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 19:15:45.498 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 19:15:45.628 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:15:45.648 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 19:15:45.648 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 19:15:45.698 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:15:45.718 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:15:45.718 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:15:45.818 -07 000000610 INF: =================== Cycle #24, Pumping Reagent CMS (4) ===================
17-03-17 19:15:45.818 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:15:45.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:15:45.848 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:15:45.848 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:15:45.848 -07 000000610 INF: =================== Cycle #24, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 19:15:45.978 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:15:46.018 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:15:46.668 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 6
17-03-17 19:15:46.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=6, R2=7, Total=13. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=266, R2=283, Total=549. Warn if over 250 bubbles per interval.
17-03-17 19:15:46.718 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.994908,
17-03-17 19:15:47.458 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:15:47.488 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:15:47.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:15:47.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:15:47.938 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:15:47.938 -07 000000610 INF: =================== Cycle #24, Pumping Reagent CMS (4) ===================
17-03-17 19:15:48.068 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:15:48.098 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:15:48.098 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:15:48.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:15:48.258 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:15:48.258 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:15:48.258 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:15:48.388 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:15:48.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:15:48.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:15:48.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:15:48.878 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:15:48.878 -07 000000610 INF: =================== Cycle #24 ===================
17-03-17 19:15:50.098 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:15:50.098 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:15:50.098 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:15:50.118 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:15:50.118 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 19:15:50.118 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 19:15:50.268 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:15:50.288 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 19:15:50.288 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 19:15:50.338 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:15:50.358 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:15:50.358 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:15:50.458 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3) ===================
17-03-17 19:15:50.458 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:15:50.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:15:50.488 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:15:50.488 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:15:50.488 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:15:50.618 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:15:50.658 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:15:51.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:15:51.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:15:51.558 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:15:51.558 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3) ===================
17-03-17 19:15:51.668 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 7
17-03-17 19:15:51.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=7, R2=6, Total=13. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=273, R2=289, Total=562. Warn if over 250 bubbles per interval.
17-03-17 19:15:51.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:15:51.718 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:15:51.718 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:15:51.848 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:15:51.878 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:15:51.878 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:15:51.878 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:15:52.008 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:15:52.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:15:52.078 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.99219,
17-03-17 19:15:52.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:15:52.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:15:52.498 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:15:52.498 -07 000000610 INF: =================== Cycle #24 ===================
17-03-17 19:15:52.498 -07 000000480 INF: WaitCommand(10000) start
17-03-17 19:15:52.498 -07 000000478 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:15:52.498 -07 000000478 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:15:53.718 -07 000000478 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:15:53.718 -07 000000478 INF: LanePump: Xmit /1?\r
17-03-17 19:15:53.748 -07 000000478 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:15:53.748 -07 000000478 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:15:53.878 -07 000000478 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:15:53.918 -07 000000478 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:15:55.448 -07 000000478 INF: LanePump: Xmit /1Q\r
17-03-17 19:15:55.478 -07 000000478 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:15:55.898 -07 000000478 INF: LanePump: Xmit /1Q\r
17-03-17 19:15:55.928 -07 000000478 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:15:55.928 -07 000000478 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:15:55.928 -07 000000478 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:15:55.928 -07 000000478 INF: ===================  ===================
17-03-17 19:15:56.668 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 19:15:56.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=273, R2=291, Total=564. Warn if over 250 bubbles per interval.
17-03-17 19:15:57.438 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.994908,
17-03-17 19:16:01.668 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:16:01.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=273, R2=291, Total=564. Warn if over 250 bubbles per interval.
17-03-17 19:16:02.508 -07 000000480 INF: WaitCommand(10000) end
17-03-17 19:16:02.508 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3) ===================
17-03-17 19:16:02.508 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 19:16:02.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:16:02.538 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:16:02.538 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:16:02.538 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:16:02.668 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 19:16:02.708 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:16:02.798 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.981281,
17-03-17 19:16:06.668 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 7
17-03-17 19:16:06.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=7, R2=7, Total=14. Max bubbles per interval: R1=9, R2=10, Total=19. Bubbles this run: R1=280, R2=298, Total=578. Warn if over 250 bubbles per interval.
17-03-17 19:16:08.158 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.994908,
17-03-17 19:16:08.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:16:08.868 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:16:09.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:16:09.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:16:09.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:16:09.768 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:16:10.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:16:10.218 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:16:10.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:16:10.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:16:10.668 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 19:16:10.668 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3) ===================
17-03-17 19:16:10.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:16:10.828 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:16:10.828 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:16:10.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:16:10.988 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:16:10.988 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:16:10.988 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:16:11.118 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:16:11.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:16:11.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:16:11.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:16:11.608 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:16:11.608 -07 000000610 INF: =================== Cycle #24 ===================
17-03-17 19:16:11.668 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 10
17-03-17 19:16:11.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=10, R2=7, Total=17. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:16:12.828 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:16:12.828 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 19:16:12.828 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:16:12.848 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:16:12.848 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 19:16:12.848 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 19:16:13.058 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:16:13.078 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 19:16:13.078 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 19:16:13.128 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:16:13.148 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:16:13.148 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:16:13.248 -07 000000610 INF: =================== Cycle #24, Pumping Reagent IMT (1) ===================
17-03-17 19:16:13.248 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:16:13.248 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:16:13.278 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:16:13.278 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:16:13.278 -07 000000610 INF: =================== Cycle #24, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 19:16:13.408 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:16:13.448 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:16:13.518 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.033041,
17-03-17 19:16:14.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:16:14.918 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:16:15.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:16:15.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:16:15.368 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:16:15.368 -07 000000610 INF: =================== Cycle #24, Pumping Reagent IMT (1) ===================
17-03-17 19:16:15.498 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:16:15.528 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:16:15.528 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:16:15.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:16:15.688 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:16:15.688 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:16:15.688 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:16:15.818 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:16:15.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:16:16.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:16:16.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:16:16.308 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:16:16.308 -07 000000610 INF: =================== Cycle #24 ===================
17-03-17 19:16:16.668 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:16:16.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:16:17.528 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:16:17.528 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:16:17.528 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:16:17.548 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:16:17.548 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 19:16:17.548 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:16:17.778 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:16:17.798 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 19:16:17.798 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 19:16:17.848 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:16:17.868 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:16:17.868 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:16:17.968 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3) ===================
17-03-17 19:16:17.968 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:16:17.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:16:17.998 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:16:17.998 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:16:17.998 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:16:18.128 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:16:18.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:16:18.878 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.027603,
17-03-17 19:16:19.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:16:19.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:16:19.068 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:16:19.068 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3) ===================
17-03-17 19:16:19.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:16:19.228 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:16:19.228 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:16:19.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:16:19.388 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:16:19.388 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:16:19.388 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:16:19.518 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:16:19.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:16:19.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:16:20.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:16:20.008 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:16:20.008 -07 000000610 INF: =================== Cycle #24 ===================
17-03-17 19:16:20.008 -07 000000610 INF: =================== Cycle #24, Flow Cell Temp 65° ===================
17-03-17 19:16:20.008 -07 000000610 INF: =================== Cycle #24, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 19:16:20.008 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 19:16:20.008 -07 000000431 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:16:20.018 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:16:20.018 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:16:20.018 -07 000000448 INF: FPGA: Recv TEC2EN 
17-03-17 19:16:20.028 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:16:20.028 -07 000000610 INF: =================== Cycle #24, Flow Cell Temp 65° ===================
17-03-17 19:16:20.028 -07 000000610 INF: =================== Cycle #24 ===================
17-03-17 19:16:20.028 -07 000000610 INF: WaitCommand(30000) start
17-03-17 19:16:21.668 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:16:21.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:16:24.238 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.0344,
17-03-17 19:16:26.668 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:16:26.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:16:29.598 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.007176,
17-03-17 19:16:31.668 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:16:31.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:16:34.958 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.99219,
17-03-17 19:16:36.668 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:16:36.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:16:40.318 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.001704,
17-03-17 19:16:41.668 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:16:41.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:16:45.678 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.000345,
17-03-17 19:16:47.558 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:16:47.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:16:50.038 -07 000000610 INF: WaitCommand(30000) end
17-03-17 19:16:50.038 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3) ===================
17-03-17 19:16:50.038 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 19:16:50.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:16:50.168 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:16:50.168 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:16:50.168 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:16:50.298 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 19:16:50.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:16:50.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:16:50.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:16:50.908 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 19:16:50.908 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3) ===================
17-03-17 19:16:51.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:16:51.038 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.985358,
17-03-17 19:16:51.068 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:16:51.068 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:16:51.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:16:51.228 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:16:51.228 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:16:51.228 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:16:51.358 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:16:51.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:16:51.668 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:16:51.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:16:51.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:16:51.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:16:51.848 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:16:51.848 -07 000000610 INF: =================== Cycle #24 ===================
17-03-17 19:16:51.848 -07 000000478 INF: WaitCommand(30000) start
17-03-17 19:16:51.848 -07 000000593 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:16:51.848 -07 000000593 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:16:53.068 -07 000000593 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:16:53.068 -07 000000593 INF: LanePump: Xmit /1?\r
17-03-17 19:16:53.098 -07 000000593 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:16:53.098 -07 000000593 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:16:53.228 -07 000000593 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:16:53.268 -07 000000593 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:16:55.608 -07 000000593 INF: LanePump: Xmit /1Q\r
17-03-17 19:16:55.638 -07 000000593 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:16:56.058 -07 000000593 INF: LanePump: Xmit /1Q\r
17-03-17 19:16:56.088 -07 000000593 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:16:56.088 -07 000000593 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 19:16:56.088 -07 000000593 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:16:56.088 -07 000000593 INF: ===================  ===================
17-03-17 19:16:56.398 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.012614,
17-03-17 19:16:56.668 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:16:56.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:17:01.668 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:17:01.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:17:01.758 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.030322,
17-03-17 19:17:06.668 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:17:06.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:17:07.118 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.02213,
17-03-17 19:17:11.668 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:17:11.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:17:13.078 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.026244,
17-03-17 19:17:16.668 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:17:16.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:17:18.438 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.016692,
17-03-17 19:17:21.668 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:17:21.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:17:21.858 -07 000000478 INF: WaitCommand(30000) end
17-03-17 19:17:21.858 -07 000000610 INF: =================== Cycle #24, Flow Cell Temp 22° ===================
17-03-17 19:17:21.858 -07 000000610 INF: =================== Cycle #24, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 19:17:21.858 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 19:17:21.868 -07 000000512 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:17:21.868 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:17:21.868 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:17:21.868 -07 000000512 INF: FPGA: Recv TEC2EN 
17-03-17 19:17:21.878 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:17:21.878 -07 000000610 INF: =================== Cycle #24, Flow Cell Temp 22° ===================
17-03-17 19:17:21.878 -07 000000610 INF: =================== Cycle #24 ===================
17-03-17 19:17:21.878 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3) ===================
17-03-17 19:17:21.878 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:17:21.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:17:21.918 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:17:21.918 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:17:21.918 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:17:22.048 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:17:22.088 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:17:23.798 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.012614,
17-03-17 19:17:25.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:17:25.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:17:25.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:17:25.698 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:17:26.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:17:26.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:17:26.148 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:17:26.148 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3) ===================
17-03-17 19:17:26.278 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:17:26.308 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:17:26.308 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:17:26.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:17:26.468 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:17:26.468 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:17:26.468 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:17:26.598 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:17:26.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:17:26.668 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:17:26.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:17:27.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:17:27.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:17:27.088 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:17:27.088 -07 000000610 INF: =================== Cycle #24 ===================
17-03-17 19:17:28.308 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 19:17:28.308 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 19:17:28.308 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:17:28.328 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:17:28.328 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 19:17:28.328 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 19:17:28.478 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:17:28.498 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:17:28.498 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:17:28.548 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:17:28.568 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:17:28.568 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:17:28.668 -07 000000610 INF: =================== Cycle #24, Pumping Reagent USM (2) ===================
17-03-17 19:17:28.668 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:17:28.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:17:28.698 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:17:28.698 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:17:28.698 -07 000000610 INF: =================== Cycle #24, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 19:17:28.828 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:17:28.868 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:17:29.158 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.011254,
17-03-17 19:17:30.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:17:30.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:17:30.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:17:30.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:17:30.788 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:17:30.788 -07 000000610 INF: =================== Cycle #24, Pumping Reagent USM (2) ===================
17-03-17 19:17:30.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:17:30.948 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:17:30.948 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:17:31.078 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:17:31.108 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:17:31.108 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:17:31.108 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:17:31.238 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:17:31.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:17:31.668 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:17:31.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:17:31.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:17:31.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:17:31.728 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:17:31.728 -07 000000610 INF: =================== Cycle #24 ===================
17-03-17 19:17:32.948 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:17:32.948 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:17:32.948 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:17:32.968 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:17:32.968 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 19:17:32.968 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:17:33.118 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:17:33.138 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:17:33.138 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:17:33.188 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:17:33.208 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:17:33.208 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:17:33.308 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3) ===================
17-03-17 19:17:33.308 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:17:33.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:17:33.338 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:17:33.338 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:17:33.338 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:17:33.468 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:17:33.508 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:17:34.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:17:34.408 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:17:34.408 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:17:34.408 -07 000000610 INF: =================== Cycle #24, Pumping Reagent PR2 (3) ===================
17-03-17 19:17:34.518 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.986717,
17-03-17 19:17:34.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:17:34.568 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:17:34.568 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:17:34.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:17:34.728 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:17:34.728 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:17:34.728 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:17:34.858 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:17:34.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:17:35.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:17:35.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:17:35.348 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:17:35.348 -07 000000610 INF: =================== Cycle #24 ===================
17-03-17 19:17:35.348 -07 000000424 INF: WaitCommand(10000) start
17-03-17 19:17:35.348 -07 000000382 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:17:35.348 -07 000000382 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:17:36.568 -07 000000382 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:17:36.568 -07 000000382 INF: LanePump: Xmit /1?\r
17-03-17 19:17:36.598 -07 000000382 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:17:36.598 -07 000000382 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:17:36.668 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:17:36.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:17:36.728 -07 000000382 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:17:36.768 -07 000000382 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:17:38.298 -07 000000382 INF: LanePump: Xmit /1Q\r
17-03-17 19:17:38.328 -07 000000382 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:17:38.748 -07 000000382 INF: LanePump: Xmit /1Q\r
17-03-17 19:17:38.778 -07 000000382 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:17:38.778 -07 000000382 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:17:38.778 -07 000000382 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:17:38.778 -07 000000382 INF: ===================  ===================
17-03-17 19:17:39.878 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.986717,
17-03-17 19:17:41.668 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:17:41.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:17:45.238 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.990831,
17-03-17 19:17:45.358 -07 000000424 INF: WaitCommand(10000) end
17-03-17 19:17:45.358 -07 000000610 INF: =================== Cycle #24, Imaging ===================
17-03-17 19:17:45.358 -07 000000610 INF: Imaging Cycle 24: ScanTilesCommand Cycle 24 time start.
17-03-17 19:17:45.368 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 19:17:45.368 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:17:45.388 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:17:45.388 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 19:17:45.388 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 19:17:45.688 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:17:45.708 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:17:45.708 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:17:45.758 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:17:45.778 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:17:45.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:17:45.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:17:45.778 -07 000000433 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 19:17:45.778 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:17:45.778 -07 000000433 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 19:17:45.788 -07 000000627 INF: FPGA: Recv EXLED1ON 
17-03-17 19:17:45.788 -07 000000433 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:17:45.788 -07 000000433 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 19:17:45.788 -07 000000627 INF: FPGA: Recv EXLED1ADCR 23176
17-03-17 19:17:45.798 -07 000000433 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:45.798 -07 000000433 INF: RedLED: Using Red data: Photodiode ADC 23176 --> 7.4 mW (old method), or 205.4 mW (new method). Difference = 198.0 mW
17-03-17 19:17:45.798 -07 000000433 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 19:17:45.798 -07 000000541 INF: FPGA: Recv EXLED1OFF 
17-03-17 19:17:45.808 -07 000000433 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:45.808 -07 000000433 INF: RedLED: LED was on for 20 ms
17-03-17 19:17:45.808 -07 000000433 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 19:17:45.808 -07 000000433 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 19:17:45.808 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:17:45.808 -07 000000433 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 19:17:45.808 -07 000000478 INF: FPGA: Recv EXLED2ON 
17-03-17 19:17:45.818 -07 000000433 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:17:45.818 -07 000000433 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:17:45.818 -07 000000627 INF: FPGA: Recv EXLED1ADCR 2100
17-03-17 19:17:45.828 -07 000000433 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:45.828 -07 000000433 INF: GreenLED: Using Green data: Photodiode ADC 2100 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.5 mW
17-03-17 19:17:45.828 -07 000000433 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 19:17:45.828 -07 000000438 INF: FPGA: Recv EXLED2OFF 
17-03-17 19:17:45.838 -07 000000433 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:45.838 -07 000000433 INF: GreenLED: LED was on for 19 ms
17-03-17 19:17:45.838 -07 000000433 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 19:17:45.838 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:17:45.838 -07 000000438 INF: FPGA: Recv EMCUR 
17-03-17 19:17:45.848 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:17:45.848 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 19:17:46.348 -07 000000433 INF: FPGA: Recv EMOUT
17-03-17 19:17:46.348 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 19:17:46.348 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 19:17:46.348 -07 000000541 INF: FPGA: Recv EMCUR 
17-03-17 19:17:46.358 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:17:46.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:17:46.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.127614832792034. ------
17-03-17 19:17:46.358 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:17:46.358 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17948 mm
17-03-17 19:17:46.358 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:17:46.358 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:17:46.358 -07 000000438 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-17 19:17:46.358 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 39206, sync = True, waitForSettling = False)
17-03-17 19:17:46.358 -07 000000541 INF: Z Motor: Moving to -0.179474 mm, started at -0.127615 mm, distance = -51.86 um
17-03-17 19:17:46.358 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:17:46.368 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:17:46.368 -07 000000541 INF: FPGA: Xmit ZDACW 39206\n [Z Motor]
17-03-17 19:17:46.368 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:17:46.378 -07 000000541 INF: FPGA: 'ZDACW 39206' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:17:46.378 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:17:46.378 -07 000000382 INF: FPGA: Recv YRDPOS 154379
17-03-17 19:17:46.388 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:17:46.388 -07 000000438 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:17:46.388 -07 000000438 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 19:17:46.388 -07 000000438 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:17:46.388 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:17:46.398 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:17:46.398 -07 000000593 INF: FPGA: Recv ZDACR 39206
17-03-17 19:17:46.408 -07 000000438 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:17:46.408 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:17:46.408 -07 000000541 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 19:17:46.588 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:17:46.588 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 19:17:46.668 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:17:46.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:17:48.088 -07 000000478 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 19:17:48.088 -07 000000438 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1705 ms overall
17-03-17 19:17:48.088 -07 000000438 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:17:48.088 -07 000000438 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24775 steps (15.484 mm). Slippage = 0.017 mm (0.00%).
17-03-17 19:17:48.088 -07 000000438 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.468 mm, average velocity = 9.072 mm/sec
17-03-17 19:17:50.598 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.997626,
17-03-17 19:17:50.938 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:17:51.318 -07 000000478 INF: FPGA: Recv YRDPOS 122698
17-03-17 19:17:51.318 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 370 ms to get response, and 380 ms overall
17-03-17 19:17:51.318 -07 000000438 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:17:51.338 -07 000000438 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:17:51.338 -07 000000438 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 19:17:51.338 -07 000000438 INF: Y Motor: Moved to 59.9111 after 4975 ms
17-03-17 19:17:51.338 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179474 mm (DAC = 39206)
17-03-17 19:17:51.338 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:51.338 -07 000000627 INF: FPGA: Recv ZSGSRD 37236
17-03-17 19:17:51.348 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:17:51.348 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:51.348 -07 000000478 INF: FPGA: Recv ZSGSRD 37230
17-03-17 19:17:51.358 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:51.358 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:51.358 -07 000000627 INF: FPGA: Recv ZSGSRD 37223
17-03-17 19:17:51.368 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:51.368 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:51.368 -07 000000593 INF: FPGA: Recv ZSGSRD 37219
17-03-17 19:17:51.378 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:51.378 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:51.378 -07 000000627 INF: FPGA: Recv ZSGSRD 37227
17-03-17 19:17:51.388 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:51.388 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:51.388 -07 000000593 INF: FPGA: Recv ZSGSRD 37235
17-03-17 19:17:51.398 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:51.398 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:51.398 -07 000000512 INF: FPGA: Recv ZSGSRD 37228
17-03-17 19:17:51.408 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:51.408 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:51.408 -07 000000480 INF: FPGA: Recv ZSGSRD 37225
17-03-17 19:17:51.418 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:51.418 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:51.418 -07 000000541 INF: FPGA: Recv ZSGSRD 37227
17-03-17 19:17:51.428 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:51.428 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:51.428 -07 000000593 INF: FPGA: Recv ZSGSRD 37233
17-03-17 19:17:51.438 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:51.438 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:17:51.438 -07 000000478 INF: FPGA: Recv ZPIEZORD 33617
17-03-17 19:17:51.448 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:51.448 -07 000000433 INF: Z Motor: Piezo is near 51.8 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.982 V. Piezo Error = -8.0 V.
17-03-17 19:17:51.448 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37228 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37228 (-178.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 37219 (-178.5 uncal um), Max = 37236 (-178.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:17:51.448 -07 000000433 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37228, posNoise = 8, negNoise = 9
17-03-17 19:17:51.448 -07 000000433 INF: Z Motor: After move to -0.179474, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:17:51.448 -07 000000433 INF: Z Motor: Settle wait time = 4978 ms, measure time = 106 ms (allowed 150 ms), total time = 5084 ms
17-03-17 19:17:51.448 -07 000000433 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:17:51.498 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 5134 ms
17-03-17 19:17:51.498 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:17:51.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:17:51.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:17:51.498 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:17:51.498 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:17:51.498 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:17:51.498 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:17:51.498 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:17:51.498 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:17:51.528 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-17 19:17:51.528 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:17:51.528 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:17:51.528 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:17:51.538 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:17:51.538 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-17 19:17:51.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:17:51.588 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:17:51.668 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:17:51.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:17:51.788 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:17:51.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:17:51.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:17:51.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460015264, 0x0, 559484976) start.
17-03-17 19:17:51.828 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:17:51.828 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 19:17:51.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 19:17:51.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460015264, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:17:51.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:17:51.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:17:51.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:17:52.028 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:17:52.028 -07 000000433 INF: Image SNR check: start
17-03-17 19:17:52.028 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:17:52.038 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:17:52.038 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:17:52.048 -07 000000433 INF: Image SNR check: pass  [peak (Max-Min)=68.00]
17-03-17 19:17:52.048 -07 000000433 INF: Autofocus start
17-03-17 19:17:52.048 -07 000000433 INF: MeasureProfile start
17-03-17 19:17:52.058 -07 000000433 INF: MeasureProfile done
17-03-17 19:17:52.058 -07 000000433 INF: X=48  Z correction [um]=0.1739867
17-03-17 19:17:52.058 -07 000000433 INF: Autofocus finished
17-03-17 19:17:52.238 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:17:52.238 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:17:52.238 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.179483921624612. ----------
17-03-17 19:17:52.248 -07 000000610 INF: Cycle	24	Tile	1	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:17:52.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37757, sync = True, waitForSettling = True)
17-03-17 19:17:52.248 -07 000000610 INF: Z Motor: Moving to -0.172840 mm, started at -0.179484 mm, distance = 6.64 um
17-03-17 19:17:52.248 -07 000000610 INF: FPGA: Xmit ZDACW 37757\n [Z Motor]
17-03-17 19:17:52.248 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 19:17:52.258 -07 000000610 INF: FPGA: 'ZDACW 37757' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:17:52.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:17:52.258 -07 000000478 INF: FPGA: Recv ZDACR 37757
17-03-17 19:17:52.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:52.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:17:52.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:52.418 -07 000000433 INF: FPGA: Recv ZSGSRD 36193
17-03-17 19:17:52.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:17:52.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:52.428 -07 000000478 INF: FPGA: Recv ZSGSRD 36199
17-03-17 19:17:52.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:52.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:52.438 -07 000000480 INF: FPGA: Recv ZSGSRD 36192
17-03-17 19:17:52.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:52.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:52.448 -07 000000627 INF: FPGA: Recv ZSGSRD 36202
17-03-17 19:17:52.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:52.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:52.458 -07 000000512 INF: FPGA: Recv ZSGSRD 36193
17-03-17 19:17:52.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:52.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:52.468 -07 000000480 INF: FPGA: Recv ZSGSRD 36190
17-03-17 19:17:52.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:52.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:52.478 -07 000000593 INF: FPGA: Recv ZSGSRD 36197
17-03-17 19:17:52.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:52.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:52.488 -07 000000541 INF: FPGA: Recv ZSGSRD 36193
17-03-17 19:17:52.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:52.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:52.498 -07 000000424 INF: FPGA: Recv ZSGSRD 36198
17-03-17 19:17:52.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:52.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:52.508 -07 000000438 INF: FPGA: Recv ZSGSRD 36190
17-03-17 19:17:52.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:52.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:17:52.518 -07 000000433 INF: FPGA: Recv ZPIEZORD 32297
17-03-17 19:17:52.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:52.528 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.761 V. Piezo Error = -8.6 V.
17-03-17 19:17:52.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36195 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36193 (-172.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36190 (-171.9 uncal um), Max = 36202 (-172.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:17:52.528 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36195, posNoise = 7, negNoise = 5
17-03-17 19:17:52.528 -07 000000610 INF: Z Motor: After move to -0.172840, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:17:52.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:17:52.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:17:52.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:17:52.528 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:17:52.528 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:17:52.528 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:17:52.528 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:17:52.528 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:17:52.528 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:17:52.528 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:17:52.528 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:17:52.528 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:17:52.528 -07 000000478 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:17:52.538 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:17:52.538 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:17:52.548 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:17:52.548 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:17:52.558 -07 000000478 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 19:17:52.558 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:17:52.558 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:17:52.558 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:17:52.578 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:17:52.578 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 45 ms.
17-03-17 19:17:52.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37934 150\n [Camera]
17-03-17 19:17:52.778 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:17:53.178 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:17:53.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:17:53.178 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:17:53.178 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:17:53.178 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:17:53.178 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:17:53.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:17:53.178 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:17:53.298 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:17:53.298 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:17:53.368 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37934 785
17-03-17 19:17:53.518 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:17:53.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:17:53.578 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:17:53.578 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:17:53.578 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:17:53.588 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:17:53.688 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 19:17:53.688 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:17:53.688 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:17:53.698 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:17:53.698 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-17 19:17:53.708 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:17:53.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:17:53.708 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:17:53.718 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:17:53.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:17:53.718 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:17:53.718 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:17:53.718 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:17:53.828 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:17:53.828 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:17:53.898 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-17 19:17:53.898 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:17:53.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37934 150' command took 2 ms to send, 1319 ms to get response, and 1327 ms overall
17-03-17 19:17:53.908 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.173215
17-03-17 19:17:53.908 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17322 mm
17-03-17 19:17:53.908 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:17:53.908 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:17:53.908 -07 000000512 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 19:17:53.908 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:17:53.908 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 37839, sync = True, waitForSettling = False)
17-03-17 19:17:53.908 -07 000000438 INF: Z Motor: Moving to -0.173216 mm, started at -0.172848 mm, distance = -0.37 um
17-03-17 19:17:53.908 -07 000000541 INF: FPGA: Recv YRDPOS 122698
17-03-17 19:17:53.918 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:17:53.918 -07 000000438 INF: FPGA: Xmit ZDACW 37839\n [Z Motor]
17-03-17 19:17:53.918 -07 000000512 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:17:53.918 -07 000000512 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:17:53.918 -07 000000512 INF: Y Motor: Moving 1330 steps2
17-03-17 19:17:53.918 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:17:53.928 -07 000000438 INF: FPGA: 'ZDACW 37839' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:17:53.928 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:17:53.928 -07 000000478 INF: FPGA: Recv ZDACR 37839
17-03-17 19:17:53.938 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:17:53.938 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:17:53.938 -07 000000438 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 19:17:54.108 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:17:54.108 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:17:54.108 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:17:54.118 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:17:54.118 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:17:54.228 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:17:54.228 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:17:54.228 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:17:54.228 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:17:54.238 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-17 19:17:54.308 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 19:17:54.308 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:17:54.338 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:17:54.338 -07 000000627 INF: FPGA: Recv YRDPOS 124381
17-03-17 19:17:54.348 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:17:54.348 -07 000000512 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:17:54.348 -07 000000512 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 19:17:54.348 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.831 mm, average velocity = 2.084 mm/sec
17-03-17 19:17:55.298 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:17:55.298 -07 000000480 INF: FPGA: Recv YRDPOS 124381
17-03-17 19:17:55.308 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:17:55.308 -07 000000512 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:17:55.328 -07 000000512 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:17:55.328 -07 000000512 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:17:55.328 -07 000000512 INF: Y Motor: Moved to 60.7329 after 1416 ms (table move)
17-03-17 19:17:55.328 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173216 mm (DAC = 37839)
17-03-17 19:17:55.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.328 -07 000000480 INF: FPGA: Recv ZSGSRD 36255
17-03-17 19:17:55.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:17:55.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.338 -07 000000478 INF: FPGA: Recv ZSGSRD 36251
17-03-17 19:17:55.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.348 -07 000000438 INF: FPGA: Recv ZSGSRD 36258
17-03-17 19:17:55.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.358 -07 000000480 INF: FPGA: Recv ZSGSRD 36250
17-03-17 19:17:55.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.368 -07 000000593 INF: FPGA: Recv ZSGSRD 36249
17-03-17 19:17:55.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.378 -07 000000480 INF: FPGA: Recv ZSGSRD 36257
17-03-17 19:17:55.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.388 -07 000000593 INF: FPGA: Recv ZSGSRD 36252
17-03-17 19:17:55.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.398 -07 000000480 INF: FPGA: Recv ZSGSRD 36254
17-03-17 19:17:55.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.408 -07 000000541 INF: FPGA: Recv ZSGSRD 36250
17-03-17 19:17:55.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.418 -07 000000480 INF: FPGA: Recv ZSGSRD 36252
17-03-17 19:17:55.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:17:55.428 -07 000000541 INF: FPGA: Recv ZPIEZORD 32386
17-03-17 19:17:55.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.438 -07 000000610 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.774 V. Piezo Error = -8.6 V.
17-03-17 19:17:55.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36253 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36252 (-172.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36249 (-172.3 uncal um), Max = 36258 (-172.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:17:55.438 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36253, posNoise = 5, negNoise = 4
17-03-17 19:17:55.438 -07 000000610 INF: Z Motor: After move to -0.173216, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:17:55.438 -07 000000610 INF: Z Motor: Settle wait time = 1418 ms, measure time = 108 ms (allowed 150 ms), total time = 1526 ms
17-03-17 19:17:55.438 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:17:55.488 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 19:17:55.488 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:17:55.488 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.173220314786395. ----------
17-03-17 19:17:55.488 -07 000000610 INF: Cycle	24	Tile	2	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:17:55.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37662, sync = True, waitForSettling = True)
17-03-17 19:17:55.488 -07 000000610 INF: Z Motor: Moving to -0.172406 mm, started at -0.173220 mm, distance = 0.81 um
17-03-17 19:17:55.488 -07 000000610 INF: FPGA: Xmit ZDACW 37662\n [Z Motor]
17-03-17 19:17:55.488 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:17:55.498 -07 000000610 INF: FPGA: 'ZDACW 37662' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:17:55.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:17:55.498 -07 000000512 INF: FPGA: Recv ZDACR 37662
17-03-17 19:17:55.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:17:55.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.658 -07 000000541 INF: FPGA: Recv ZSGSRD 36128
17-03-17 19:17:55.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:17:55.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.668 -07 000000512 INF: FPGA: Recv ZSGSRD 36132
17-03-17 19:17:55.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.678 -07 000000512 INF: FPGA: Recv ZSGSRD 36132
17-03-17 19:17:55.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.688 -07 000000512 INF: FPGA: Recv ZSGSRD 36128
17-03-17 19:17:55.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.698 -07 000000512 INF: FPGA: Recv ZSGSRD 36124
17-03-17 19:17:55.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.708 -07 000000433 INF: FPGA: Recv ZSGSRD 36130
17-03-17 19:17:55.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.718 -07 000000512 INF: FPGA: Recv ZSGSRD 36137
17-03-17 19:17:55.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.728 -07 000000512 INF: FPGA: Recv ZSGSRD 36125
17-03-17 19:17:55.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.738 -07 000000541 INF: FPGA: Recv ZSGSRD 36126
17-03-17 19:17:55.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:55.748 -07 000000541 INF: FPGA: Recv ZSGSRD 36136
17-03-17 19:17:55.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:17:55.758 -07 000000541 INF: FPGA: Recv ZPIEZORD 32181
17-03-17 19:17:55.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:55.768 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.747 V. Piezo Error = -8.7 V.
17-03-17 19:17:55.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36130 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36129 (-171.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36124 (-171.5 uncal um), Max = 36137 (-171.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:17:55.768 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36130, posNoise = 7, negNoise = 6
17-03-17 19:17:55.768 -07 000000610 INF: Z Motor: After move to -0.172406, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:17:55.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:17:55.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:17:55.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:17:55.768 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:17:55.768 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:17:55.768 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:17:55.768 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:17:55.768 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:17:55.768 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:17:55.768 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:17:55.768 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:17:55.768 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:17:55.768 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:17:55.778 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:17:55.778 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:17:55.778 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:17:55.778 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:17:55.788 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:17:55.788 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:17:55.788 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:17:55.788 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:17:55.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37839 150\n [Camera]
17-03-17 19:17:55.998 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:17:56.398 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:17:56.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:17:56.398 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:17:56.398 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:17:56.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:17:56.398 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:17:56.398 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:17:56.398 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1060376624, 0x0, 418435064) start.
17-03-17 19:17:56.398 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:17:56.398 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:17:56.588 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37839 785
17-03-17 19:17:56.638 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.98264,
17-03-17 19:17:56.668 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:17:56.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:17:56.738 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:17:56.798 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1060376624, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:17:56.798 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:17:56.798 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:17:56.798 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:17:56.798 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:17:56.798 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:17:56.798 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:17:56.798 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:17:56.798 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:17:56.808 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:17:56.928 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:17:56.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:17:56.928 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:17:56.928 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:17:56.928 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1095798888, 0x0, 391868352) start.
17-03-17 19:17:56.928 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:17:56.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:17:56.928 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:17:56.928 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:17:56.928 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1131221152, 0x0, 418435064) start.
17-03-17 19:17:57.118 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:17:57.118 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:17:57.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37839 150' command took 2 ms to send, 1317 ms to get response, and 1326 ms overall
17-03-17 19:17:57.128 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.172967
17-03-17 19:17:57.128 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17297 mm
17-03-17 19:17:57.128 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:17:57.128 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:17:57.128 -07 000000382 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 19:17:57.128 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:17:57.128 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 37785, sync = True, waitForSettling = False)
17-03-17 19:17:57.128 -07 000000593 INF: Z Motor: Moving to -0.172969 mm, started at -0.172430 mm, distance = -0.54 um
17-03-17 19:17:57.128 -07 000000627 INF: FPGA: Recv YRDPOS 124381
17-03-17 19:17:57.138 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:17:57.138 -07 000000593 INF: FPGA: Xmit ZDACW 37785\n [Z Motor]
17-03-17 19:17:57.138 -07 000000382 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:17:57.138 -07 000000382 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:17:57.138 -07 000000382 INF: Y Motor: Moving 1344 steps-20
17-03-17 19:17:57.138 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:17:57.148 -07 000000593 INF: FPGA: 'ZDACW 37785' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:17:57.148 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:17:57.148 -07 000000438 INF: FPGA: Recv ZDACR 37785
17-03-17 19:17:57.158 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:17:57.158 -07 000000593 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 19:17:57.158 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:17:57.328 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1131221152, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 19:17:57.328 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:17:57.328 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:17:57.328 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:17:57.328 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1095798888, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:17:57.328 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:17:57.328 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:17:57.328 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:17:57.328 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:17:57.338 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:17:57.538 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 19:17:57.538 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 19:17:57.568 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:17:57.568 -07 000000433 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:17:57.578 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:17:57.578 -07 000000382 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:17:57.578 -07 000000382 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:17:57.578 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.840 mm, average velocity = 2.099 mm/sec
17-03-17 19:17:58.528 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:17:58.528 -07 000000541 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:17:58.538 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:17:58.538 -07 000000382 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:17:58.558 -07 000000382 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:17:58.558 -07 000000382 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:17:58.558 -07 000000382 INF: Y Motor: Moved to 61.5640 after 1427 ms (table move)
17-03-17 19:17:58.558 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172969 mm (DAC = 37785)
17-03-17 19:17:58.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.558 -07 000000512 INF: FPGA: Recv ZSGSRD 36215
17-03-17 19:17:58.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:17:58.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.568 -07 000000593 INF: FPGA: Recv ZSGSRD 36221
17-03-17 19:17:58.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.578 -07 000000438 INF: FPGA: Recv ZSGSRD 36215
17-03-17 19:17:58.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.588 -07 000000424 INF: FPGA: Recv ZSGSRD 36214
17-03-17 19:17:58.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.598 -07 000000512 INF: FPGA: Recv ZSGSRD 36209
17-03-17 19:17:58.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.608 -07 000000593 INF: FPGA: Recv ZSGSRD 36209
17-03-17 19:17:58.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.618 -07 000000627 INF: FPGA: Recv ZSGSRD 36219
17-03-17 19:17:58.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.628 -07 000000593 INF: FPGA: Recv ZSGSRD 36215
17-03-17 19:17:58.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.638 -07 000000438 INF: FPGA: Recv ZSGSRD 36219
17-03-17 19:17:58.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.648 -07 000000382 INF: FPGA: Recv ZSGSRD 36219
17-03-17 19:17:58.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:17:58.658 -07 000000438 INF: FPGA: Recv ZPIEZORD 32299
17-03-17 19:17:58.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.668 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.766 V. Piezo Error = -8.7 V.
17-03-17 19:17:58.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36216 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36215 (-172.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36209 (-172.1 uncal um), Max = 36221 (-172.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:17:58.668 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36216, posNoise = 5, negNoise = 7
17-03-17 19:17:58.668 -07 000000610 INF: Z Motor: After move to -0.172969, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:17:58.668 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 106 ms (allowed 150 ms), total time = 1535 ms
17-03-17 19:17:58.668 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:17:58.718 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 19:17:58.718 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:17:58.718 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.17298261893715. ----------
17-03-17 19:17:58.718 -07 000000610 INF: Cycle	24	Tile	3	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:17:58.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37608, sync = True, waitForSettling = True)
17-03-17 19:17:58.718 -07 000000610 INF: Z Motor: Moving to -0.172158 mm, started at -0.172983 mm, distance = 0.82 um
17-03-17 19:17:58.718 -07 000000610 INF: FPGA: Xmit ZDACW 37608\n [Z Motor]
17-03-17 19:17:58.728 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:17:58.728 -07 000000610 INF: FPGA: 'ZDACW 37608' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:17:58.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:17:58.728 -07 000000438 INF: FPGA: Recv ZDACR 37608
17-03-17 19:17:58.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:17:58.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.888 -07 000000512 INF: FPGA: Recv ZSGSRD 36087
17-03-17 19:17:58.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:17:58.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.898 -07 000000627 INF: FPGA: Recv ZSGSRD 36090
17-03-17 19:17:58.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.908 -07 000000593 INF: FPGA: Recv ZSGSRD 36089
17-03-17 19:17:58.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.918 -07 000000438 INF: FPGA: Recv ZSGSRD 36085
17-03-17 19:17:58.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.928 -07 000000512 INF: FPGA: Recv ZSGSRD 36092
17-03-17 19:17:58.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.938 -07 000000382 INF: FPGA: Recv ZSGSRD 36087
17-03-17 19:17:58.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.948 -07 000000593 INF: FPGA: Recv ZSGSRD 36084
17-03-17 19:17:58.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.958 -07 000000627 INF: FPGA: Recv ZSGSRD 36090
17-03-17 19:17:58.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.968 -07 000000424 INF: FPGA: Recv ZSGSRD 36089
17-03-17 19:17:58.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:17:58.978 -07 000000433 INF: FPGA: Recv ZSGSRD 36088
17-03-17 19:17:58.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:17:58.988 -07 000000593 INF: FPGA: Recv ZPIEZORD 32113
17-03-17 19:17:58.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:17:58.998 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.739 V. Piezo Error = -8.8 V.
17-03-17 19:17:58.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36088 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36088 (-171.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36084 (-171.3 uncal um), Max = 36092 (-171.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:17:58.998 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36088, posNoise = 4, negNoise = 4
17-03-17 19:17:58.998 -07 000000610 INF: Z Motor: After move to -0.172158, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:17:58.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:17:58.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:17:58.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:17:58.998 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:17:58.998 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:17:58.998 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:17:58.998 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:17:58.998 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:17:58.998 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:17:58.998 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:17:58.998 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:17:58.998 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:17:58.998 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:17:59.008 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:17:59.008 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:17:59.008 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:17:59.008 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:17:59.018 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:17:59.018 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:17:59.018 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:17:59.018 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:17:59.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37785 150\n [Camera]
17-03-17 19:17:59.218 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:17:59.618 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:17:59.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:17:59.618 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:17:59.618 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:17:59.618 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:17:59.628 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:17:59.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:17:59.628 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:17:59.628 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:17:59.628 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:17:59.818 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37785 785
17-03-17 19:17:59.968 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:17:59.998 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:17:59.998 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:17:59.998 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:17:59.998 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:17:59.998 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:17:59.998 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:00.008 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:00.008 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:18:00.008 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:00.008 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:18:00.158 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:18:00.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:18:00.158 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:00.158 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:00.158 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:18:00.158 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:18:00.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:18:00.158 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:00.158 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:00.158 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:18:00.348 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-17 19:18:00.348 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:18:00.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37785 150' command took 2 ms to send, 1314 ms to get response, and 1326 ms overall
17-03-17 19:18:00.348 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.172391
17-03-17 19:18:00.348 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17239 mm
17-03-17 19:18:00.348 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:18:00.348 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:18:00.348 -07 000000424 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 19:18:00.348 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:00.348 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 37659, sync = True, waitForSettling = False)
17-03-17 19:18:00.348 -07 000000433 INF: Z Motor: Moving to -0.172392 mm, started at -0.172160 mm, distance = -0.23 um
17-03-17 19:18:00.358 -07 000000433 INF: FPGA: Xmit ZDACW 37659\n [Z Motor]
17-03-17 19:18:00.358 -07 000000478 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:18:00.358 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:18:00.358 -07 000000424 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:00.358 -07 000000424 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:18:00.358 -07 000000424 INF: Y Motor: Moving 1342 steps-18
17-03-17 19:18:00.358 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:18:00.368 -07 000000433 INF: FPGA: 'ZDACW 37659' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:00.368 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:00.368 -07 000000627 INF: FPGA: Recv ZDACR 37659
17-03-17 19:18:00.378 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:18:00.378 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:00.378 -07 000000433 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 19:18:00.538 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:18:00.538 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:18:00.538 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:00.538 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:00.538 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:18:00.538 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:18:00.538 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:00.538 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:18:00.548 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:00.548 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:18:00.748 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 19:18:00.748 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 19:18:00.788 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:00.788 -07 000000482 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:18:00.798 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:18:00.798 -07 000000424 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:00.798 -07 000000424 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:18:00.798 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.123 mm/sec
17-03-17 19:18:01.668 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:18:01.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:18:01.748 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:01.748 -07 000000438 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:18:01.758 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:01.758 -07 000000424 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:01.778 -07 000000424 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:18:01.778 -07 000000424 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:18:01.778 -07 000000424 INF: Y Motor: Moved to 62.3955 after 1421 ms (table move)
17-03-17 19:18:01.778 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172392 mm (DAC = 37659)
17-03-17 19:18:01.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:01.778 -07 000000382 INF: FPGA: Recv ZSGSRD 36127
17-03-17 19:18:01.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:18:01.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:01.788 -07 000000593 INF: FPGA: Recv ZSGSRD 36122
17-03-17 19:18:01.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:01.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:01.798 -07 000000478 INF: FPGA: Recv ZSGSRD 36126
17-03-17 19:18:01.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:01.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:01.808 -07 000000593 INF: FPGA: Recv ZSGSRD 36128
17-03-17 19:18:01.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:01.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:01.818 -07 000000382 INF: FPGA: Recv ZSGSRD 36131
17-03-17 19:18:01.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:01.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:01.828 -07 000000593 INF: FPGA: Recv ZSGSRD 36130
17-03-17 19:18:01.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:01.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:01.838 -07 000000382 INF: FPGA: Recv ZSGSRD 36121
17-03-17 19:18:01.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:01.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:01.848 -07 000000593 INF: FPGA: Recv ZSGSRD 36121
17-03-17 19:18:01.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:01.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:01.858 -07 000000478 INF: FPGA: Recv ZSGSRD 36122
17-03-17 19:18:01.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:01.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:01.868 -07 000000424 INF: FPGA: Recv ZSGSRD 36121
17-03-17 19:18:01.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:01.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:01.878 -07 000000478 INF: FPGA: Recv ZPIEZORD 32231
17-03-17 19:18:01.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:01.888 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.746 V. Piezo Error = -8.6 V.
17-03-17 19:18:01.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36125 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36124 (-171.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36121 (-171.5 uncal um), Max = 36131 (-171.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:18:01.888 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36125, posNoise = 6, negNoise = 4
17-03-17 19:18:01.888 -07 000000610 INF: Z Motor: After move to -0.172392, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:01.888 -07 000000610 INF: Z Motor: Settle wait time = 1423 ms, measure time = 108 ms (allowed 150 ms), total time = 1531 ms
17-03-17 19:18:01.888 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:18:01.938 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 19:18:01.938 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:18:01.938 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.17239801563225. ----------
17-03-17 19:18:01.938 -07 000000610 INF: Cycle	24	Tile	4	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:18:01.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37482, sync = True, waitForSettling = True)
17-03-17 19:18:01.938 -07 000000610 INF: Z Motor: Moving to -0.171582 mm, started at -0.172398 mm, distance = 0.82 um
17-03-17 19:18:01.938 -07 000000610 INF: FPGA: Xmit ZDACW 37482\n [Z Motor]
17-03-17 19:18:01.938 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:18:01.948 -07 000000610 INF: FPGA: 'ZDACW 37482' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:18:01.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:01.948 -07 000000433 INF: FPGA: Recv ZDACR 37482
17-03-17 19:18:01.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:01.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:18:01.998 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.990831,
17-03-17 19:18:02.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:02.108 -07 000000429 INF: FPGA: Recv ZSGSRD 36004
17-03-17 19:18:02.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:02.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:02.118 -07 000000382 INF: FPGA: Recv ZSGSRD 36003
17-03-17 19:18:02.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:02.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:02.128 -07 000000433 INF: FPGA: Recv ZSGSRD 36004
17-03-17 19:18:02.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:02.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:02.138 -07 000000627 INF: FPGA: Recv ZSGSRD 35997
17-03-17 19:18:02.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:02.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:02.148 -07 000000433 INF: FPGA: Recv ZSGSRD 36004
17-03-17 19:18:02.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:02.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:02.158 -07 000000429 INF: FPGA: Recv ZSGSRD 35998
17-03-17 19:18:02.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:02.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:02.168 -07 000000627 INF: FPGA: Recv ZSGSRD 35998
17-03-17 19:18:02.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:02.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:02.178 -07 000000433 INF: FPGA: Recv ZSGSRD 35999
17-03-17 19:18:02.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:02.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:02.188 -07 000000382 INF: FPGA: Recv ZSGSRD 36001
17-03-17 19:18:02.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:02.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:02.198 -07 000000433 INF: FPGA: Recv ZSGSRD 35999
17-03-17 19:18:02.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:02.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:02.208 -07 000000429 INF: FPGA: Recv ZPIEZORD 32063
17-03-17 19:18:02.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:02.218 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.719 V. Piezo Error = -8.7 V.
17-03-17 19:18:02.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36001 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36000 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35997 (-170.7 uncal um), Max = 36004 (-170.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:18:02.218 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36001, posNoise = 3, negNoise = 4
17-03-17 19:18:02.218 -07 000000610 INF: Z Motor: After move to -0.171582, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:02.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:18:02.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:02.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:02.218 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:18:02.218 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:02.218 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:18:02.218 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:18:02.218 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:02.218 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:02.218 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:18:02.218 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:18:02.218 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:18:02.218 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:18:02.228 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:18:02.228 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:18:02.228 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:18:02.228 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:18:02.238 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:18:02.238 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:18:02.238 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:18:02.238 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:18:02.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37659 150\n [Camera]
17-03-17 19:18:02.448 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:18:02.838 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:18:02.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:18:02.848 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:02.848 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:02.848 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 19:18:02.848 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:18:02.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:18:02.848 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:02.848 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:02.848 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 19:18:03.038 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37659 785
17-03-17 19:18:03.188 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:18:03.248 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:18:03.248 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:18:03.248 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:03.248 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 19:18:03.248 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:18:03.248 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:03.248 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:03.248 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:18:03.248 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:03.258 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:18:03.378 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:18:03.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:18:03.378 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:03.378 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:18:03.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:18:03.378 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:03.388 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:18:03.388 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:03.388 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:03.388 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 19:18:03.568 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:18:03.568 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:18:03.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37659 150' command took 2 ms to send, 1317 ms to get response, and 1326 ms overall
17-03-17 19:18:03.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:18:03.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.171601413326671. ------
17-03-17 19:18:03.578 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:03.578 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17823 mm
17-03-17 19:18:03.578 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:18:03.578 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:03.578 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:18:03.578 -07 000000541 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 19:18:03.578 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38934, sync = True, waitForSettling = False)
17-03-17 19:18:03.578 -07 000000512 INF: Z Motor: Moving to -0.178228 mm, started at -0.171601 mm, distance = -6.63 um
17-03-17 19:18:03.588 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:18:03.588 -07 000000512 INF: FPGA: Xmit ZDACW 38934\n [Z Motor]
17-03-17 19:18:03.588 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:18:03.598 -07 000000512 INF: FPGA: 'ZDACW 38934' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:03.598 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:03.598 -07 000000480 INF: FPGA: Recv ZDACR 38934
17-03-17 19:18:03.608 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:03.608 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:03.608 -07 000000512 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 19:18:03.608 -07 000000512 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:18:03.618 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 19:18:03.618 -07 000000541 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:03.618 -07 000000541 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:18:03.618 -07 000000541 INF: Y Motor: Moving 1339 steps-15
17-03-17 19:18:03.618 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:18:03.628 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:18:03.768 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:18:03.768 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:18:03.768 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:03.768 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:03.768 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:18:03.768 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:18:03.768 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:03.768 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:03.768 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:18:03.778 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:18:03.818 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:18:03.818 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 233 ms overall
17-03-17 19:18:03.998 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 19:18:03.998 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:18:04.038 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:04.038 -07 000000480 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:18:04.048 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:18:04.048 -07 000000541 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:04.048 -07 000000541 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:18:04.048 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.837 mm, average velocity = 2.157 mm/sec
17-03-17 19:18:04.998 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:04.998 -07 000000627 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:18:05.008 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:05.008 -07 000000541 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:05.028 -07 000000541 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:18:05.028 -07 000000541 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:18:05.028 -07 000000541 INF: Y Motor: Moved to 63.2241 after 1445 ms (table move)
17-03-17 19:18:05.028 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178228 mm (DAC = 38934)
17-03-17 19:18:05.028 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:05.038 -07 000000593 INF: FPGA: Recv ZSGSRD 37039
17-03-17 19:18:05.038 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:18:05.038 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:05.038 -07 000000541 INF: FPGA: Recv ZSGSRD 37031
17-03-17 19:18:05.048 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:05.048 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:05.048 -07 000000480 INF: FPGA: Recv ZSGSRD 37031
17-03-17 19:18:05.058 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:05.058 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:05.058 -07 000000627 INF: FPGA: Recv ZSGSRD 37039
17-03-17 19:18:05.068 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:05.068 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:05.068 -07 000000480 INF: FPGA: Recv ZSGSRD 37033
17-03-17 19:18:05.078 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:05.078 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:05.078 -07 000000438 INF: FPGA: Recv ZSGSRD 37041
17-03-17 19:18:05.088 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:05.088 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:05.088 -07 000000627 INF: FPGA: Recv ZSGSRD 37033
17-03-17 19:18:05.098 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:05.098 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:05.098 -07 000000512 INF: FPGA: Recv ZSGSRD 37032
17-03-17 19:18:05.108 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:05.108 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:05.108 -07 000000627 INF: FPGA: Recv ZSGSRD 37032
17-03-17 19:18:05.118 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:05.118 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:05.118 -07 000000480 INF: FPGA: Recv ZSGSRD 37030
17-03-17 19:18:05.128 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:05.128 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:05.128 -07 000000541 INF: FPGA: Recv ZPIEZORD 33402
17-03-17 19:18:05.138 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:05.138 -07 000000382 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.941 V. Piezo Error = -8.1 V.
17-03-17 19:18:05.138 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.2 um, Read 10 ADC samples: Avg = 37034 (-177.3 uncal um), Error = 0.9 uncal um, Median = 37032 (-177.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37030 (-177.3 uncal um), Max = 37041 (-177.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:18:05.138 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37034, posNoise = 7, negNoise = 4
17-03-17 19:18:05.138 -07 000000382 INF: Z Motor: After move to -0.178228, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:05.138 -07 000000382 INF: Z Motor: Settle wait time = 1448 ms, measure time = 103 ms (allowed 150 ms), total time = 1551 ms
17-03-17 19:18:05.138 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:18:05.188 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 19:18:05.188 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:18:05.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:05.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:05.188 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:05.188 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:05.188 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:18:05.188 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:05.198 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:18:05.198 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:18:05.198 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:18:05.198 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:18:05.208 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:18:05.208 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:18:05.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:18:05.258 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:18:05.458 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:18:05.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:18:05.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:18:05.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592318392, 0x0, 559484976) start.
17-03-17 19:18:05.498 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:18:05.498 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 19:18:05.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 19:18:05.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592318392, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:18:05.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:05.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:18:05.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:18:05.598 -07 000000541 INF: Autofocus start
17-03-17 19:18:05.598 -07 000000541 INF: MeasureProfile start
17-03-17 19:18:05.598 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:05.598 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:05.608 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:18:05.608 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:18:05.608 -07 000000541 INF: MeasureProfile done
17-03-17 19:18:05.608 -07 000000541 INF: X=-64  Z correction [um]=-0.4038377
17-03-17 19:18:05.608 -07 000000541 INF: Autofocus finished
17-03-17 19:18:05.808 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:18:05.808 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:18:05.808 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.17823762446911. ----------
17-03-17 19:18:05.808 -07 000000610 INF: Cycle	24	Tile	5	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:18:05.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37358, sync = True, waitForSettling = True)
17-03-17 19:18:05.818 -07 000000610 INF: Z Motor: Moving to -0.171014 mm, started at -0.178238 mm, distance = 7.22 um
17-03-17 19:18:05.818 -07 000000610 INF: FPGA: Xmit ZDACW 37358\n [Z Motor]
17-03-17 19:18:05.818 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 19:18:05.828 -07 000000610 INF: FPGA: 'ZDACW 37358' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:05.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:05.828 -07 000000480 INF: FPGA: Recv ZDACR 37358
17-03-17 19:18:05.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:05.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:18:05.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:05.988 -07 000000593 INF: FPGA: Recv ZSGSRD 35917
17-03-17 19:18:05.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:05.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:05.998 -07 000000627 INF: FPGA: Recv ZSGSRD 35910
17-03-17 19:18:06.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:06.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:06.008 -07 000000512 INF: FPGA: Recv ZSGSRD 35912
17-03-17 19:18:06.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:06.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:06.018 -07 000000541 INF: FPGA: Recv ZSGSRD 35918
17-03-17 19:18:06.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:06.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:06.028 -07 000000512 INF: FPGA: Recv ZSGSRD 35911
17-03-17 19:18:06.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:06.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:06.038 -07 000000382 INF: FPGA: Recv ZSGSRD 35903
17-03-17 19:18:06.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:06.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:06.048 -07 000000512 INF: FPGA: Recv ZSGSRD 35904
17-03-17 19:18:06.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:06.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:06.058 -07 000000480 INF: FPGA: Recv ZSGSRD 35923
17-03-17 19:18:06.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:06.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:06.068 -07 000000627 INF: FPGA: Recv ZSGSRD 35908
17-03-17 19:18:06.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:06.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:06.078 -07 000000512 INF: FPGA: Recv ZSGSRD 35909
17-03-17 19:18:06.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:06.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:06.088 -07 000000593 INF: FPGA: Recv ZPIEZORD 31890
17-03-17 19:18:06.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:06.098 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -8.9 V.
17-03-17 19:18:06.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35912 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35910 (-170.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 35903 (-170.1 uncal um), Max = 35923 (-170.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:18:06.098 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35912, posNoise = 11, negNoise = 9
17-03-17 19:18:06.098 -07 000000610 INF: Z Motor: After move to -0.171014, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:06.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:18:06.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:06.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:06.098 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:06.098 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:18:06.098 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:18:06.098 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:06.098 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:18:06.098 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:06.098 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:18:06.098 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:18:06.098 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:18:06.098 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:18:06.108 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:18:06.108 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:18:06.108 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:18:06.108 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:18:06.118 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:18:06.118 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:18:06.118 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:18:06.118 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:18:06.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37535 150\n [Camera]
17-03-17 19:18:06.318 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:18:06.668 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:18:06.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:18:06.728 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:18:06.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:18:06.728 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:06.728 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:06.728 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 19:18:06.728 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:18:06.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:18:06.728 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:06.728 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:06.728 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:18:06.918 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37535 785
17-03-17 19:18:07.068 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:18:07.098 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:18:07.098 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:18:07.098 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:07.098 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:18:07.098 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:18:07.098 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:07.108 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:18:07.108 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:18:07.108 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:18:07.118 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:18:07.258 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:18:07.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:18:07.258 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:07.258 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:07.258 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 19:18:07.268 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:18:07.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:18:07.268 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:07.268 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:07.268 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 19:18:07.358 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.990831,
17-03-17 19:18:07.448 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:18:07.448 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:18:07.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37535 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-17 19:18:07.458 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.171435
17-03-17 19:18:07.458 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17144 mm
17-03-17 19:18:07.458 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:18:07.458 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:18:07.458 -07 000000541 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 19:18:07.458 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:07.458 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 37450, sync = True, waitForSettling = False)
17-03-17 19:18:07.458 -07 000000438 INF: Z Motor: Moving to -0.171435 mm, started at -0.171030 mm, distance = -0.41 um
17-03-17 19:18:07.458 -07 000000482 INF: FPGA: Recv YRDPOS 129484
17-03-17 19:18:07.468 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:18:07.468 -07 000000541 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:07.468 -07 000000438 INF: FPGA: Xmit ZDACW 37450\n [Z Motor]
17-03-17 19:18:07.468 -07 000000541 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:18:07.468 -07 000000541 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:18:07.468 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:18:07.478 -07 000000438 INF: FPGA: 'ZDACW 37450' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:18:07.478 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:18:07.488 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:07.488 -07 000000627 INF: FPGA: Recv ZDACR 37450
17-03-17 19:18:07.498 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:18:07.498 -07 000000438 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 19:18:07.638 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:18:07.638 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:18:07.638 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:07.648 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:18:07.648 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:18:07.648 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:07.648 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:07.648 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:18:07.648 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:18:07.658 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:18:07.848 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 19:18:07.848 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 19:18:07.888 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:07.888 -07 000000627 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:18:07.898 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:18:07.898 -07 000000541 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:07.898 -07 000000541 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 19:18:07.898 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.838 mm, average velocity = 2.178 mm/sec
17-03-17 19:18:08.848 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:08.848 -07 000000512 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:18:08.858 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:08.858 -07 000000541 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:08.868 -07 000000541 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:18:08.868 -07 000000541 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:18:08.868 -07 000000541 INF: Y Motor: Moved to 64.0571 after 1415 ms (table move)
17-03-17 19:18:08.878 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171435 mm (DAC = 37450)
17-03-17 19:18:08.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:08.878 -07 000000627 INF: FPGA: Recv ZSGSRD 35979
17-03-17 19:18:08.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:18:08.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:08.888 -07 000000438 INF: FPGA: Recv ZSGSRD 35975
17-03-17 19:18:08.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:08.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:08.898 -07 000000593 INF: FPGA: Recv ZSGSRD 35978
17-03-17 19:18:08.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:08.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:08.908 -07 000000541 INF: FPGA: Recv ZSGSRD 35981
17-03-17 19:18:08.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:08.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:08.918 -07 000000480 INF: FPGA: Recv ZSGSRD 35976
17-03-17 19:18:08.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:08.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:08.928 -07 000000438 INF: FPGA: Recv ZSGSRD 35984
17-03-17 19:18:08.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:08.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:08.938 -07 000000593 INF: FPGA: Recv ZSGSRD 35972
17-03-17 19:18:08.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:08.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:08.948 -07 000000627 INF: FPGA: Recv ZSGSRD 35972
17-03-17 19:18:08.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:08.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:08.958 -07 000000512 INF: FPGA: Recv ZSGSRD 35979
17-03-17 19:18:08.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:08.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:08.968 -07 000000541 INF: FPGA: Recv ZSGSRD 35982
17-03-17 19:18:08.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:08.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:08.978 -07 000000480 INF: FPGA: Recv ZPIEZORD 32022
17-03-17 19:18:08.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:08.988 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.715 V. Piezo Error = -8.7 V.
17-03-17 19:18:08.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35978 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35978 (-170.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35972 (-170.5 uncal um), Max = 35984 (-170.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:18:08.988 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35978, posNoise = 6, negNoise = 6
17-03-17 19:18:08.988 -07 000000610 INF: Z Motor: After move to -0.171435, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:08.988 -07 000000610 INF: Z Motor: Settle wait time = 1418 ms, measure time = 108 ms (allowed 150 ms), total time = 1526 ms
17-03-17 19:18:08.988 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:18:09.038 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1578 ms
17-03-17 19:18:09.038 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:18:09.038 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.171453656447411. ----------
17-03-17 19:18:09.038 -07 000000610 INF: Cycle	24	Tile	6	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:18:09.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37273, sync = True, waitForSettling = True)
17-03-17 19:18:09.038 -07 000000610 INF: Z Motor: Moving to -0.170625 mm, started at -0.171454 mm, distance = 0.83 um
17-03-17 19:18:09.038 -07 000000610 INF: FPGA: Xmit ZDACW 37273\n [Z Motor]
17-03-17 19:18:09.038 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:18:09.048 -07 000000610 INF: FPGA: 'ZDACW 37273' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:18:09.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:09.048 -07 000000433 INF: FPGA: Recv ZDACR 37273
17-03-17 19:18:09.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:09.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:18:09.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:09.208 -07 000000512 INF: FPGA: Recv ZSGSRD 35855
17-03-17 19:18:09.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:09.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:09.218 -07 000000433 INF: FPGA: Recv ZSGSRD 35852
17-03-17 19:18:09.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:09.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:09.228 -07 000000593 INF: FPGA: Recv ZSGSRD 35850
17-03-17 19:18:09.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:09.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:09.238 -07 000000482 INF: FPGA: Recv ZSGSRD 35848
17-03-17 19:18:09.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:09.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:09.248 -07 000000593 INF: FPGA: Recv ZSGSRD 35849
17-03-17 19:18:09.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:18:09.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:09.258 -07 000000382 INF: FPGA: Recv ZSGSRD 35849
17-03-17 19:18:09.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:09.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:09.268 -07 000000541 INF: FPGA: Recv ZSGSRD 35847
17-03-17 19:18:09.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:09.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:09.278 -07 000000512 INF: FPGA: Recv ZSGSRD 35852
17-03-17 19:18:09.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:09.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:09.288 -07 000000593 INF: FPGA: Recv ZSGSRD 35855
17-03-17 19:18:09.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:09.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:09.298 -07 000000482 INF: FPGA: Recv ZSGSRD 35849
17-03-17 19:18:09.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:09.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:09.308 -07 000000627 INF: FPGA: Recv ZPIEZORD 31881
17-03-17 19:18:09.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:09.318 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -8.8 V.
17-03-17 19:18:09.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35851 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35850 (-169.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35847 (-169.7 uncal um), Max = 35855 (-169.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:18:09.318 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35851, posNoise = 4, negNoise = 4
17-03-17 19:18:09.318 -07 000000610 INF: Z Motor: After move to -0.170625, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:09.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:18:09.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:09.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:09.318 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:09.318 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:18:09.318 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:09.318 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:09.318 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:18:09.318 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:18:09.318 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:18:09.318 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:18:09.318 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:18:09.318 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:18:09.318 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:18:09.318 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:18:09.328 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:18:09.328 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:18:09.328 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:18:09.328 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:18:09.338 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:18:09.338 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:18:09.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37450 150\n [Camera]
17-03-17 19:18:09.538 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:18:09.938 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:18:09.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:18:09.938 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:09.938 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:09.938 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 19:18:09.938 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:18:09.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:18:09.938 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:09.938 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:09.938 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 19:18:10.128 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37450 785
17-03-17 19:18:10.278 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:18:10.318 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:18:10.318 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:18:10.318 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:10.318 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:18:10.318 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:18:10.318 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:10.328 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:10.328 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:18:10.328 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:10.328 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:18:10.468 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:18:10.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:18:10.478 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:10.478 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:10.478 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 19:18:10.478 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:18:10.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:18:10.478 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:10.478 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:10.478 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 19:18:10.668 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-17 19:18:10.668 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:18:10.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37450 150' command took 2 ms to send, 1322 ms to get response, and 1326 ms overall
17-03-17 19:18:10.668 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.171199
17-03-17 19:18:10.668 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17120 mm
17-03-17 19:18:10.668 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:18:10.668 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:18:10.668 -07 000000541 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 19:18:10.668 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:10.668 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 37399, sync = True, waitForSettling = False)
17-03-17 19:18:10.668 -07 000000593 INF: Z Motor: Moving to -0.171202 mm, started at -0.170638 mm, distance = -0.56 um
17-03-17 19:18:10.668 -07 000000512 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:18:10.678 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:18:10.678 -07 000000541 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:10.678 -07 000000541 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:18:10.678 -07 000000541 INF: Y Motor: Moving 1337 steps-11
17-03-17 19:18:10.678 -07 000000593 INF: FPGA: Xmit ZDACW 37399\n [Z Motor]
17-03-17 19:18:10.678 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 19:18:10.688 -07 000000593 INF: FPGA: 'ZDACW 37399' command took 1 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:18:10.688 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:10.688 -07 000000627 INF: FPGA: Recv ZDACR 37399
17-03-17 19:18:10.698 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:18:10.698 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:10.698 -07 000000593 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 19:18:10.858 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:18:10.858 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:18:10.858 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:10.858 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:18:10.858 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:18:10.858 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:10.858 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:10.858 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:18:10.858 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:10.868 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:18:11.068 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 19:18:11.068 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:18:11.098 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:11.108 -07 000000593 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:18:11.118 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:11.118 -07 000000541 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:11.118 -07 000000541 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:18:11.118 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 19:18:11.678 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:18:11.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:18:12.068 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:12.068 -07 000000482 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:18:12.078 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:12.078 -07 000000541 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:12.098 -07 000000541 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:18:12.098 -07 000000541 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:18:12.098 -07 000000541 INF: Y Motor: Moved to 64.8789 after 1425 ms (table move)
17-03-17 19:18:12.098 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171202 mm (DAC = 37399)
17-03-17 19:18:12.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.098 -07 000000433 INF: FPGA: Recv ZSGSRD 35937
17-03-17 19:18:12.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:18:12.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.108 -07 000000627 INF: FPGA: Recv ZSGSRD 35938
17-03-17 19:18:12.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.118 -07 000000593 INF: FPGA: Recv ZSGSRD 35935
17-03-17 19:18:12.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.128 -07 000000429 INF: FPGA: Recv ZSGSRD 35944
17-03-17 19:18:12.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.138 -07 000000512 INF: FPGA: Recv ZSGSRD 35945
17-03-17 19:18:12.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.148 -07 000000627 INF: FPGA: Recv ZSGSRD 35943
17-03-17 19:18:12.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.158 -07 000000382 INF: FPGA: Recv ZSGSRD 35943
17-03-17 19:18:12.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.168 -07 000000482 INF: FPGA: Recv ZSGSRD 35939
17-03-17 19:18:12.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.178 -07 000000512 INF: FPGA: Recv ZSGSRD 35939
17-03-17 19:18:12.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.188 -07 000000429 INF: FPGA: Recv ZSGSRD 35937
17-03-17 19:18:12.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:12.198 -07 000000382 INF: FPGA: Recv ZPIEZORD 31971
17-03-17 19:18:12.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.208 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.707 V. Piezo Error = -8.8 V.
17-03-17 19:18:12.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35940 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35939 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35935 (-170.3 uncal um), Max = 35945 (-170.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:18:12.208 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35940, posNoise = 5, negNoise = 5
17-03-17 19:18:12.208 -07 000000610 INF: Z Motor: After move to -0.171202, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:12.208 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 106 ms (allowed 150 ms), total time = 1533 ms
17-03-17 19:18:12.208 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:18:12.258 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 19:18:12.258 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:18:12.258 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.171209536386024. ----------
17-03-17 19:18:12.258 -07 000000610 INF: Cycle	24	Tile	7	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:18:12.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37222, sync = True, waitForSettling = True)
17-03-17 19:18:12.258 -07 000000610 INF: Z Motor: Moving to -0.170391 mm, started at -0.171210 mm, distance = 0.82 um
17-03-17 19:18:12.258 -07 000000610 INF: FPGA: Xmit ZDACW 37222\n [Z Motor]
17-03-17 19:18:12.268 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:18:12.268 -07 000000610 INF: FPGA: 'ZDACW 37222' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:18:12.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:12.268 -07 000000382 INF: FPGA: Recv ZDACR 37222
17-03-17 19:18:12.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:18:12.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.428 -07 000000482 INF: FPGA: Recv ZSGSRD 35813
17-03-17 19:18:12.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:12.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.438 -07 000000593 INF: FPGA: Recv ZSGSRD 35812
17-03-17 19:18:12.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.448 -07 000000627 INF: FPGA: Recv ZSGSRD 35818
17-03-17 19:18:12.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.458 -07 000000382 INF: FPGA: Recv ZSGSRD 35815
17-03-17 19:18:12.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.468 -07 000000482 INF: FPGA: Recv ZSGSRD 35811
17-03-17 19:18:12.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.478 -07 000000541 INF: FPGA: Recv ZSGSRD 35815
17-03-17 19:18:12.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.488 -07 000000512 INF: FPGA: Recv ZSGSRD 35813
17-03-17 19:18:12.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.498 -07 000000433 INF: FPGA: Recv ZSGSRD 35816
17-03-17 19:18:12.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.508 -07 000000541 INF: FPGA: Recv ZSGSRD 35813
17-03-17 19:18:12.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:12.518 -07 000000382 INF: FPGA: Recv ZSGSRD 35820
17-03-17 19:18:12.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:12.528 -07 000000512 INF: FPGA: Recv ZPIEZORD 31793
17-03-17 19:18:12.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:12.538 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.680 V. Piezo Error = -8.9 V.
17-03-17 19:18:12.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35815 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35814 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35811 (-169.5 uncal um), Max = 35820 (-169.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:18:12.538 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35815, posNoise = 5, negNoise = 4
17-03-17 19:18:12.538 -07 000000610 INF: Z Motor: After move to -0.170391, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:12.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:18:12.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:12.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:12.538 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:12.538 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:12.538 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:18:12.538 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:12.538 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:18:12.538 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:18:12.538 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 19:18:12.538 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:18:12.538 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:18:12.538 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:18:12.548 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:18:12.548 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:18:12.548 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:18:12.548 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:18:12.558 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 19:18:12.558 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:18:12.558 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:18:12.558 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:18:12.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37399 150\n [Camera]
17-03-17 19:18:12.718 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.0344,
17-03-17 19:18:12.768 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 19:18:13.168 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:18:13.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:18:13.168 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:13.168 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:13.168 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 19:18:13.168 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:18:13.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:18:13.168 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:13.168 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:13.168 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 19:18:13.358 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37399 785
17-03-17 19:18:13.508 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:18:13.548 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:18:13.548 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:18:13.548 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:13.558 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:18:13.558 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:18:13.558 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:18:13.558 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:18:13.558 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:13.568 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:13.568 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:18:13.698 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:18:13.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:18:13.698 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:13.698 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:13.698 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-17 19:18:13.698 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:18:13.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:18:13.708 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:13.708 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:13.708 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) start.
17-03-17 19:18:13.888 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-17 19:18:13.888 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:18:13.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37399 150' command took 2 ms to send, 1318 ms to get response, and 1328 ms overall
17-03-17 19:18:13.888 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170956
17-03-17 19:18:13.898 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17096 mm
17-03-17 19:18:13.898 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:18:13.898 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:18:13.898 -07 000000429 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 19:18:13.898 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:13.898 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 37345, sync = True, waitForSettling = False)
17-03-17 19:18:13.898 -07 000000482 INF: Z Motor: Moving to -0.170954 mm, started at -0.170407 mm, distance = -0.55 um
17-03-17 19:18:13.898 -07 000000541 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:18:13.908 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:18:13.908 -07 000000429 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:13.908 -07 000000429 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:18:13.908 -07 000000429 INF: Y Motor: Moving 1350 steps-28
17-03-17 19:18:13.908 -07 000000482 INF: FPGA: Xmit ZDACW 37345\n [Z Motor]
17-03-17 19:18:13.908 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:18:13.918 -07 000000482 INF: FPGA: 'ZDACW 37345' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:18:13.918 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:13.918 -07 000000593 INF: FPGA: Recv ZDACR 37345
17-03-17 19:18:13.928 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:18:13.928 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:13.928 -07 000000482 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 19:18:14.078 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:18:14.078 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:18:14.078 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:14.088 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:14.088 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:18:14.088 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:18:14.088 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:18:14.088 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:14.098 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:14.108 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:18:14.298 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 19:18:14.298 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:18:14.338 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:14.338 -07 000000480 INF: FPGA: Recv YRDPOS 134582
17-03-17 19:18:14.348 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:18:14.348 -07 000000429 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:14.348 -07 000000429 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:18:14.348 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 19:18:15.298 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:15.298 -07 000000482 INF: FPGA: Recv YRDPOS 134582
17-03-17 19:18:15.308 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:15.308 -07 000000429 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:15.328 -07 000000429 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:18:15.328 -07 000000429 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:18:15.328 -07 000000429 INF: Y Motor: Moved to 65.7139 after 1433 ms (table move)
17-03-17 19:18:15.328 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170954 mm (DAC = 37345)
17-03-17 19:18:15.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.338 -07 000000433 INF: FPGA: Recv ZSGSRD 35903
17-03-17 19:18:15.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:15.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.348 -07 000000627 INF: FPGA: Recv ZSGSRD 35905
17-03-17 19:18:15.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.358 -07 000000433 INF: FPGA: Recv ZSGSRD 35907
17-03-17 19:18:15.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.368 -07 000000541 INF: FPGA: Recv ZSGSRD 35901
17-03-17 19:18:15.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.378 -07 000000433 INF: FPGA: Recv ZSGSRD 35903
17-03-17 19:18:15.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.388 -07 000000627 INF: FPGA: Recv ZSGSRD 35903
17-03-17 19:18:15.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.398 -07 000000593 INF: FPGA: Recv ZSGSRD 35895
17-03-17 19:18:15.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.408 -07 000000433 INF: FPGA: Recv ZSGSRD 35897
17-03-17 19:18:15.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.418 -07 000000593 INF: FPGA: Recv ZSGSRD 35899
17-03-17 19:18:15.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.428 -07 000000512 INF: FPGA: Recv ZSGSRD 35906
17-03-17 19:18:15.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:15.438 -07 000000627 INF: FPGA: Recv ZPIEZORD 31922
17-03-17 19:18:15.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.448 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.698 V. Piezo Error = -8.8 V.
17-03-17 19:18:15.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35902 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35903 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35895 (-170.0 uncal um), Max = 35907 (-170.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:18:15.448 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35902, posNoise = 5, negNoise = 7
17-03-17 19:18:15.448 -07 000000610 INF: Z Motor: After move to -0.170954, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:15.448 -07 000000610 INF: Z Motor: Settle wait time = 1435 ms, measure time = 111 ms (allowed 150 ms), total time = 1546 ms
17-03-17 19:18:15.448 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 19:18:15.488 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 19:18:15.488 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:18:15.488 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.170965416324637. ----------
17-03-17 19:18:15.488 -07 000000610 INF: Cycle	24	Tile	8	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:18:15.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37169, sync = True, waitForSettling = True)
17-03-17 19:18:15.488 -07 000000610 INF: Z Motor: Moving to -0.170149 mm, started at -0.170965 mm, distance = 0.82 um
17-03-17 19:18:15.488 -07 000000610 INF: FPGA: Xmit ZDACW 37169\n [Z Motor]
17-03-17 19:18:15.488 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:18:15.498 -07 000000610 INF: FPGA: 'ZDACW 37169' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:18:15.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:15.498 -07 000000429 INF: FPGA: Recv ZDACR 37169
17-03-17 19:18:15.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:18:15.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.658 -07 000000433 INF: FPGA: Recv ZSGSRD 35777
17-03-17 19:18:15.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:15.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.668 -07 000000482 INF: FPGA: Recv ZSGSRD 35777
17-03-17 19:18:15.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.678 -07 000000424 INF: FPGA: Recv ZSGSRD 35781
17-03-17 19:18:15.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.688 -07 000000627 INF: FPGA: Recv ZSGSRD 35781
17-03-17 19:18:15.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:18:15.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.698 -07 000000512 INF: FPGA: Recv ZSGSRD 35777
17-03-17 19:18:15.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.708 -07 000000627 INF: FPGA: Recv ZSGSRD 35778
17-03-17 19:18:15.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.718 -07 000000482 INF: FPGA: Recv ZSGSRD 35777
17-03-17 19:18:15.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.728 -07 000000627 INF: FPGA: Recv ZSGSRD 35773
17-03-17 19:18:15.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.738 -07 000000482 INF: FPGA: Recv ZSGSRD 35774
17-03-17 19:18:15.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:15.748 -07 000000512 INF: FPGA: Recv ZSGSRD 35775
17-03-17 19:18:15.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:15.758 -07 000000424 INF: FPGA: Recv ZPIEZORD 31736
17-03-17 19:18:15.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:15.768 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.672 V. Piezo Error = -8.9 V.
17-03-17 19:18:15.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35777 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35777 (-169.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35773 (-169.3 uncal um), Max = 35781 (-169.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:18:15.768 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35777, posNoise = 4, negNoise = 4
17-03-17 19:18:15.768 -07 000000610 INF: Z Motor: After move to -0.170149, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:15.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:18:15.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:15.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:15.768 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:15.768 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:15.768 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:18:15.768 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:15.768 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:18:15.768 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:18:15.768 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:18:15.768 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:18:15.768 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:18:15.768 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:18:15.778 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:18:15.778 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:18:15.778 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:18:15.778 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:18:15.788 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:18:15.788 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:18:15.788 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:18:15.788 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:18:15.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37345 150\n [Camera]
17-03-17 19:18:15.998 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:18:16.398 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:18:16.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:18:16.398 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:16.398 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:16.398 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) start.
17-03-17 19:18:16.398 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:18:16.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:18:16.398 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:16.398 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:16.398 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 3087011888, 0x0, 418435064) start.
17-03-17 19:18:16.588 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37345 785
17-03-17 19:18:16.678 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:18:16.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:18:16.738 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:18:16.768 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:18:16.768 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:18:16.768 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:16.778 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 3087011888, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:18:16.778 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:18:16.778 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:16.778 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:16.778 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:18:16.778 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:16.788 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:18:16.928 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:18:16.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:18:16.928 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:17.078 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:18:17.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:18:17.078 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:17.078 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:17.078 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:18:17.088 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:17.088 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:18:17.118 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:18:17.118 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:18:17.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37345 150' command took 2 ms to send, 1318 ms to get response, and 1326 ms overall
17-03-17 19:18:17.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:18:17.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.170162389806917. ------
17-03-17 19:18:17.128 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:17.128 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17642 mm
17-03-17 19:18:17.128 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:18:17.128 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38539, sync = True, waitForSettling = False)
17-03-17 19:18:17.128 -07 000000433 INF: Z Motor: Moving to -0.176420 mm, started at -0.170162 mm, distance = -6.26 um
17-03-17 19:18:17.128 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:18:17.128 -07 000000438 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 19:18:17.128 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:17.138 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:18:17.138 -07 000000433 INF: FPGA: Xmit ZDACW 38539\n [Z Motor]
17-03-17 19:18:17.138 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:18:17.148 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:17.148 -07 000000433 INF: FPGA: 'ZDACW 38539' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:18:17.148 -07 000000478 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:18:17.158 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:18:17.158 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:18:17.158 -07 000000438 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:17.158 -07 000000438 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:18:17.158 -07 000000438 INF: Y Motor: Moving 1341 steps-18
17-03-17 19:18:17.168 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:17.168 -07 000000382 INF: FPGA: Recv ZDACR 38539
17-03-17 19:18:17.178 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:18:17.178 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:18:17.178 -07 000000433 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 19:18:17.358 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:18:17.358 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:18:17.468 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:18:17.468 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:18:17.468 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:18:17.468 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:17.468 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:18:17.468 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:17.468 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:18:17.468 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 539 ms.
17-03-17 19:18:17.468 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:18:17.478 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:18:17.548 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 19:18:17.548 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 19:18:17.588 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:17.588 -07 000000476 INF: FPGA: Recv YRDPOS 136272
17-03-17 19:18:17.598 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:18:17.598 -07 000000438 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:17.598 -07 000000438 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:18:17.598 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.140 mm/sec
17-03-17 19:18:18.078 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.008536,
17-03-17 19:18:18.548 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:18.548 -07 000000382 INF: FPGA: Recv YRDPOS 136272
17-03-17 19:18:18.558 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:18.558 -07 000000438 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:18.578 -07 000000438 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:18:18.578 -07 000000438 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:18:18.578 -07 000000438 INF: Y Motor: Moved to 66.5391 after 1444 ms (table move)
17-03-17 19:18:18.578 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176420 mm (DAC = 38539)
17-03-17 19:18:18.578 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:18.578 -07 000000627 INF: FPGA: Recv ZSGSRD 36753
17-03-17 19:18:18.588 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:18:18.588 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:18.588 -07 000000480 INF: FPGA: Recv ZSGSRD 36756
17-03-17 19:18:18.598 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:18.598 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:18.598 -07 000000478 INF: FPGA: Recv ZSGSRD 36750
17-03-17 19:18:18.608 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:18.608 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:18.608 -07 000000438 INF: FPGA: Recv ZSGSRD 36754
17-03-17 19:18:18.618 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:18.618 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:18.618 -07 000000478 INF: FPGA: Recv ZSGSRD 36759
17-03-17 19:18:18.628 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:18.638 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:18.638 -07 000000593 INF: FPGA: Recv ZSGSRD 36751
17-03-17 19:18:18.648 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:18:18.648 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:18.648 -07 000000433 INF: FPGA: Recv ZSGSRD 36746
17-03-17 19:18:18.658 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:18.668 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:18.668 -07 000000382 INF: FPGA: Recv ZSGSRD 36760
17-03-17 19:18:18.678 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:18:18.678 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:18.678 -07 000000482 INF: FPGA: Recv ZSGSRD 36748
17-03-17 19:18:18.688 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:18.698 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:18.698 -07 000000424 INF: FPGA: Recv ZSGSRD 36758
17-03-17 19:18:18.708 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:18:18.708 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:18.708 -07 000000476 INF: FPGA: Recv ZPIEZORD 33067
17-03-17 19:18:18.718 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:18.718 -07 000000512 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.881 V. Piezo Error = -8.2 V.
17-03-17 19:18:18.718 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36754 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36754 (-175.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36746 (-175.5 uncal um), Max = 36760 (-175.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:18:18.718 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36754, posNoise = 6, negNoise = 8
17-03-17 19:18:18.718 -07 000000512 INF: Z Motor: After move to -0.176420, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:18.718 -07 000000512 INF: Z Motor: Settle wait time = 1447 ms, measure time = 136 ms (allowed 150 ms), total time = 1583 ms
17-03-17 19:18:18.718 -07 000000512 INF: Z Motor: Waiting extra 14 ms after reading position to reach expected total of 150 ms
17-03-17 19:18:18.738 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 19:18:18.738 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:18:18.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:18.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:18.738 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:18.738 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:18.738 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:18:18.738 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:18.738 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:18:18.738 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:18:18.748 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:18:18.748 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:18:18.758 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:18:18.758 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:18:18.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:18:18.808 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:18:19.008 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:18:19.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:18:19.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:18:19.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424724128, 0x0, 559484976) start.
17-03-17 19:18:19.048 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:18:19.048 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 19:18:19.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 287 ms overall
17-03-17 19:18:19.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424724128, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:18:19.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:19.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:18:19.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:18:19.148 -07 000000438 INF: Autofocus start
17-03-17 19:18:19.148 -07 000000438 INF: MeasureProfile start
17-03-17 19:18:19.148 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:19.148 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:19.158 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:18:19.158 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:18:19.158 -07 000000438 INF: MeasureProfile done
17-03-17 19:18:19.158 -07 000000438 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:18:19.158 -07 000000438 INF: Autofocus finished
17-03-17 19:18:19.358 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:18:19.358 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:18:19.358 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.176438845069417. ----------
17-03-17 19:18:19.358 -07 000000610 INF: Cycle	24	Tile	9	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:18:19.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37072, sync = True, waitForSettling = True)
17-03-17 19:18:19.368 -07 000000610 INF: Z Motor: Moving to -0.169705 mm, started at -0.176439 mm, distance = 6.73 um
17-03-17 19:18:19.368 -07 000000610 INF: FPGA: Xmit ZDACW 37072\n [Z Motor]
17-03-17 19:18:19.368 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:18:19.378 -07 000000610 INF: FPGA: 'ZDACW 37072' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:19.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:19.378 -07 000000541 INF: FPGA: Recv ZDACR 37072
17-03-17 19:18:19.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:19.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:18:19.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:19.538 -07 000000382 INF: FPGA: Recv ZSGSRD 35706
17-03-17 19:18:19.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:19.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:19.548 -07 000000424 INF: FPGA: Recv ZSGSRD 35707
17-03-17 19:18:19.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:19.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:19.558 -07 000000482 INF: FPGA: Recv ZSGSRD 35713
17-03-17 19:18:19.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:19.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:19.568 -07 000000627 INF: FPGA: Recv ZSGSRD 35706
17-03-17 19:18:19.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:18:19.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:19.578 -07 000000476 INF: FPGA: Recv ZSGSRD 35707
17-03-17 19:18:19.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:19.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:19.588 -07 000000478 INF: FPGA: Recv ZSGSRD 35708
17-03-17 19:18:19.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:19.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:19.598 -07 000000482 INF: FPGA: Recv ZSGSRD 35705
17-03-17 19:18:19.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:19.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:19.608 -07 000000382 INF: FPGA: Recv ZSGSRD 35707
17-03-17 19:18:19.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:19.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:19.618 -07 000000593 INF: FPGA: Recv ZSGSRD 35702
17-03-17 19:18:19.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:19.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:19.628 -07 000000476 INF: FPGA: Recv ZSGSRD 35704
17-03-17 19:18:19.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:19.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:19.638 -07 000000382 INF: FPGA: Recv ZPIEZORD 31683
17-03-17 19:18:19.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:18:19.648 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.657 V. Piezo Error = -8.9 V.
17-03-17 19:18:19.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35706 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35706 (-168.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35702 (-168.8 uncal um), Max = 35713 (-168.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:18:19.648 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35706, posNoise = 7, negNoise = 4
17-03-17 19:18:19.648 -07 000000610 INF: Z Motor: After move to -0.169705, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:19.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:18:19.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:19.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:19.648 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:19.648 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:19.648 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:18:19.648 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:19.648 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:18:19.648 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:18:19.648 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:18:19.648 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:18:19.648 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:18:19.648 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:18:19.648 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:18:19.648 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:18:19.648 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:18:19.648 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:18:19.658 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:18:19.658 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 11 ms.
17-03-17 19:18:19.658 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:18:19.658 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:18:19.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37249 150\n [Camera]
17-03-17 19:18:19.868 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:18:20.268 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:18:20.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:18:20.268 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:20.268 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:20.268 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1060376624, 0x0, 391868352) start.
17-03-17 19:18:20.268 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:18:20.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:18:20.278 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:20.388 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:20.388 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:18:20.458 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37249 785
17-03-17 19:18:20.608 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:18:20.658 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1060376624, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:18:20.658 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:18:20.658 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:20.658 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:20.658 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:18:20.768 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:18:20.768 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:18:20.768 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:20.768 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:20.778 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-17 19:18:20.798 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:18:20.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:18:20.808 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:20.808 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:18:20.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:18:20.808 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:20.808 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:20.808 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1439400208, 0x0, 418435064) start.
17-03-17 19:18:20.808 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:20.808 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:18:20.998 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:18:20.998 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:18:20.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37249 150' command took 2 ms to send, 1321 ms to get response, and 1327 ms overall
17-03-17 19:18:20.998 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.170509
17-03-17 19:18:20.998 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17051 mm
17-03-17 19:18:20.998 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:18:20.998 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:18:20.998 -07 000000593 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 19:18:20.998 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:20.998 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37248, sync = True, waitForSettling = False)
17-03-17 19:18:20.998 -07 000000512 INF: Z Motor: Moving to -0.170510 mm, started at -0.169706 mm, distance = -0.80 um
17-03-17 19:18:20.998 -07 000000382 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:18:21.008 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:18:21.008 -07 000000593 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:21.008 -07 000000512 INF: FPGA: Xmit ZDACW 37248\n [Z Motor]
17-03-17 19:18:21.008 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:18:21.008 -07 000000593 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:18:21.008 -07 000000593 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:18:21.018 -07 000000512 INF: FPGA: 'ZDACW 37248' command took 1 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:18:21.018 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:21.018 -07 000000382 INF: FPGA: Recv ZDACR 37248
17-03-17 19:18:21.028 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:18:21.028 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:21.028 -07 000000512 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 19:18:21.188 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1439400208, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:18:21.188 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:18:21.188 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:21.188 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:18:21.188 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:18:21.188 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:21.188 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:21.188 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:21.188 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:18:21.198 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:18:21.398 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 19:18:21.398 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 19:18:21.438 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:21.438 -07 000000478 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:18:21.448 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:18:21.448 -07 000000593 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:21.448 -07 000000593 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 19:18:21.448 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.152 mm/sec
17-03-17 19:18:21.678 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:18:21.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:18:22.398 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:22.398 -07 000000480 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:18:22.408 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.408 -07 000000593 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:22.428 -07 000000593 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:18:22.428 -07 000000593 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:18:22.428 -07 000000593 INF: Y Motor: Moved to 67.3721 after 1424 ms (table move)
17-03-17 19:18:22.428 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170510 mm (DAC = 37248)
17-03-17 19:18:22.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.428 -07 000000480 INF: FPGA: Recv ZSGSRD 35837
17-03-17 19:18:22.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:18:22.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.438 -07 000000476 INF: FPGA: Recv ZSGSRD 35826
17-03-17 19:18:22.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.448 -07 000000482 INF: FPGA: Recv ZSGSRD 35832
17-03-17 19:18:22.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.458 -07 000000476 INF: FPGA: Recv ZSGSRD 35831
17-03-17 19:18:22.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.468 -07 000000512 INF: FPGA: Recv ZSGSRD 35838
17-03-17 19:18:22.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.478 -07 000000593 INF: FPGA: Recv ZSGSRD 35838
17-03-17 19:18:22.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.488 -07 000000476 INF: FPGA: Recv ZSGSRD 35830
17-03-17 19:18:22.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.498 -07 000000512 INF: FPGA: Recv ZSGSRD 35835
17-03-17 19:18:22.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.508 -07 000000476 INF: FPGA: Recv ZSGSRD 35831
17-03-17 19:18:22.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.518 -07 000000512 INF: FPGA: Recv ZSGSRD 35826
17-03-17 19:18:22.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:22.528 -07 000000480 INF: FPGA: Recv ZPIEZORD 31863
17-03-17 19:18:22.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.538 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -8.8 V.
17-03-17 19:18:22.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35832 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35832 (-169.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35826 (-169.6 uncal um), Max = 35838 (-169.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:18:22.538 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35832, posNoise = 6, negNoise = 6
17-03-17 19:18:22.538 -07 000000610 INF: Z Motor: After move to -0.170510, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:22.538 -07 000000610 INF: Z Motor: Settle wait time = 1425 ms, measure time = 108 ms (allowed 150 ms), total time = 1533 ms
17-03-17 19:18:22.538 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:18:22.588 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 19:18:22.588 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:18:22.588 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.170515721474714. ----------
17-03-17 19:18:22.588 -07 000000610 INF: Cycle	24	Tile	10	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:18:22.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37071, sync = True, waitForSettling = True)
17-03-17 19:18:22.588 -07 000000610 INF: Z Motor: Moving to -0.169700 mm, started at -0.170516 mm, distance = 0.82 um
17-03-17 19:18:22.588 -07 000000610 INF: FPGA: Xmit ZDACW 37071\n [Z Motor]
17-03-17 19:18:22.588 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:18:22.598 -07 000000610 INF: FPGA: 'ZDACW 37071' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:18:22.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:22.598 -07 000000593 INF: FPGA: Recv ZDACR 37071
17-03-17 19:18:22.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:18:22.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.758 -07 000000482 INF: FPGA: Recv ZSGSRD 35711
17-03-17 19:18:22.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:22.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.768 -07 000000478 INF: FPGA: Recv ZSGSRD 35713
17-03-17 19:18:22.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.778 -07 000000482 INF: FPGA: Recv ZSGSRD 35715
17-03-17 19:18:22.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.788 -07 000000382 INF: FPGA: Recv ZSGSRD 35718
17-03-17 19:18:22.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.798 -07 000000480 INF: FPGA: Recv ZSGSRD 35704
17-03-17 19:18:22.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.808 -07 000000476 INF: FPGA: Recv ZSGSRD 35699
17-03-17 19:18:22.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.818 -07 000000478 INF: FPGA: Recv ZSGSRD 35712
17-03-17 19:18:22.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:18:22.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.828 -07 000000482 INF: FPGA: Recv ZSGSRD 35708
17-03-17 19:18:22.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.838 -07 000000480 INF: FPGA: Recv ZSGSRD 35702
17-03-17 19:18:22.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:22.848 -07 000000476 INF: FPGA: Recv ZSGSRD 35702
17-03-17 19:18:22.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:22.858 -07 000000382 INF: FPGA: Recv ZPIEZORD 31648
17-03-17 19:18:22.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:22.868 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.657 V. Piezo Error = -9.0 V.
17-03-17 19:18:22.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35708 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35710 (-168.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35699 (-168.8 uncal um), Max = 35718 (-168.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:18:22.868 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35708, posNoise = 10, negNoise = 9
17-03-17 19:18:22.868 -07 000000610 INF: Z Motor: After move to -0.169700, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:22.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:18:22.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:22.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:22.868 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:22.868 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:22.868 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:18:22.868 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:18:22.868 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:18:22.868 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:22.868 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:18:22.868 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:18:22.868 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:18:22.868 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:18:22.878 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:18:22.878 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:18:22.878 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:18:22.878 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:18:22.888 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:18:22.888 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:18:22.888 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:18:22.888 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:18:22.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37248 150\n [Camera]
17-03-17 19:18:23.088 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:18:23.438 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.990831,
17-03-17 19:18:23.498 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:18:23.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:18:23.498 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:23.498 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:23.498 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1474822472, 0x0, 391868352) start.
17-03-17 19:18:23.498 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:18:23.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:18:23.498 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:23.498 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:23.498 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1095798888, 0x0, 418435064) start.
17-03-17 19:18:23.688 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37248 785
17-03-17 19:18:23.838 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:18:23.868 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1474822472, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:18:23.868 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:18:23.868 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:23.868 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1095798888, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:18:23.868 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:18:23.868 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:23.878 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:18:23.878 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:18:23.878 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:18:23.888 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:18:24.028 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:18:24.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:18:24.028 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:24.028 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:24.028 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1131221152, 0x0, 391868352) start.
17-03-17 19:18:24.028 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:18:24.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:18:24.028 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:24.028 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:24.028 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:18:24.218 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-17 19:18:24.218 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:18:24.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37248 150' command took 2 ms to send, 1317 ms to get response, and 1326 ms overall
17-03-17 19:18:24.218 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169506
17-03-17 19:18:24.218 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16951 mm
17-03-17 19:18:24.228 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:18:24.228 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:18:24.228 -07 000000512 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 19:18:24.228 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:24.228 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 37029, sync = True, waitForSettling = False)
17-03-17 19:18:24.228 -07 000000438 INF: Z Motor: Moving to -0.169508 mm, started at -0.169719 mm, distance = 0.21 um
17-03-17 19:18:24.228 -07 000000627 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:18:24.238 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:18:24.238 -07 000000512 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:24.238 -07 000000512 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:18:24.238 -07 000000512 INF: Y Motor: Moving 1345 steps-22
17-03-17 19:18:24.238 -07 000000438 INF: FPGA: Xmit ZDACW 37029\n [Z Motor]
17-03-17 19:18:24.238 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:18:24.248 -07 000000438 INF: FPGA: 'ZDACW 37029' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:18:24.248 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:18:24.258 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:24.258 -07 000000482 INF: FPGA: Recv ZDACR 37029
17-03-17 19:18:24.268 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:18:24.268 -07 000000438 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:18:24.418 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1131221152, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:18:24.418 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:18:24.418 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:24.418 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:18:24.418 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:18:24.418 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:24.418 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:18:24.418 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:18:24.418 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:18:24.428 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:18:24.618 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 19:18:24.628 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 389 ms overall
17-03-17 19:18:24.658 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:24.658 -07 000000627 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:18:24.668 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:18:24.668 -07 000000512 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:24.668 -07 000000512 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:18:24.668 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.841 mm, average velocity = 2.161 mm/sec
17-03-17 19:18:25.618 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:25.618 -07 000000429 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:18:25.628 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:25.628 -07 000000512 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:25.638 -07 000000512 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:18:25.648 -07 000000512 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:18:25.648 -07 000000512 INF: Y Motor: Moved to 68.2051 after 1418 ms (table move)
17-03-17 19:18:25.648 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169508 mm (DAC = 37029)
17-03-17 19:18:25.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:25.648 -07 000000482 INF: FPGA: Recv ZSGSRD 35682
17-03-17 19:18:25.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:18:25.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:25.658 -07 000000627 INF: FPGA: Recv ZSGSRD 35670
17-03-17 19:18:25.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:25.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:25.668 -07 000000512 INF: FPGA: Recv ZSGSRD 35680
17-03-17 19:18:25.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:25.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:25.678 -07 000000627 INF: FPGA: Recv ZSGSRD 35672
17-03-17 19:18:25.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:25.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:25.688 -07 000000482 INF: FPGA: Recv ZSGSRD 35681
17-03-17 19:18:25.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:25.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:25.698 -07 000000512 INF: FPGA: Recv ZSGSRD 35682
17-03-17 19:18:25.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:25.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:25.708 -07 000000429 INF: FPGA: Recv ZSGSRD 35667
17-03-17 19:18:25.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:25.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:25.718 -07 000000482 INF: FPGA: Recv ZSGSRD 35672
17-03-17 19:18:25.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:25.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:25.728 -07 000000476 INF: FPGA: Recv ZSGSRD 35679
17-03-17 19:18:25.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:25.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:25.738 -07 000000482 INF: FPGA: Recv ZSGSRD 35679
17-03-17 19:18:25.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:25.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:25.748 -07 000000476 INF: FPGA: Recv ZPIEZORD 31628
17-03-17 19:18:25.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:25.758 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -8.9 V.
17-03-17 19:18:25.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35676 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35679 (-168.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35667 (-168.6 uncal um), Max = 35682 (-168.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:18:25.758 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35676, posNoise = 6, negNoise = 9
17-03-17 19:18:25.758 -07 000000610 INF: Z Motor: After move to -0.169508, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:25.758 -07 000000610 INF: Z Motor: Settle wait time = 1420 ms, measure time = 107 ms (allowed 150 ms), total time = 1527 ms
17-03-17 19:18:25.758 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:18:25.808 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 19:18:25.808 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:18:25.808 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.169513544380599. ----------
17-03-17 19:18:25.808 -07 000000610 INF: Cycle	24	Tile	11	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:18:25.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36852, sync = True, waitForSettling = True)
17-03-17 19:18:25.808 -07 000000610 INF: Z Motor: Moving to -0.168698 mm, started at -0.169514 mm, distance = 0.82 um
17-03-17 19:18:25.808 -07 000000610 INF: FPGA: Xmit ZDACW 36852\n [Z Motor]
17-03-17 19:18:25.808 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:18:25.818 -07 000000610 INF: FPGA: 'ZDACW 36852' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:18:25.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:25.818 -07 000000541 INF: FPGA: Recv ZDACR 36852
17-03-17 19:18:25.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:25.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:18:25.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:25.978 -07 000000476 INF: FPGA: Recv ZSGSRD 35556
17-03-17 19:18:25.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:25.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:25.988 -07 000000478 INF: FPGA: Recv ZSGSRD 35551
17-03-17 19:18:25.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:25.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:25.998 -07 000000476 INF: FPGA: Recv ZSGSRD 35552
17-03-17 19:18:26.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:26.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:26.008 -07 000000478 INF: FPGA: Recv ZSGSRD 35550
17-03-17 19:18:26.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:26.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:26.018 -07 000000627 INF: FPGA: Recv ZSGSRD 35551
17-03-17 19:18:26.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:26.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:26.028 -07 000000478 INF: FPGA: Recv ZSGSRD 35554
17-03-17 19:18:26.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:26.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:26.038 -07 000000541 INF: FPGA: Recv ZSGSRD 35548
17-03-17 19:18:26.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:26.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:26.048 -07 000000438 INF: FPGA: Recv ZSGSRD 35549
17-03-17 19:18:26.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:26.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:26.058 -07 000000627 INF: FPGA: Recv ZSGSRD 35549
17-03-17 19:18:26.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:26.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:26.068 -07 000000478 INF: FPGA: Recv ZSGSRD 35553
17-03-17 19:18:26.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:26.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:26.078 -07 000000476 INF: FPGA: Recv ZPIEZORD 31506
17-03-17 19:18:26.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:26.088 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.623 V. Piezo Error = -8.9 V.
17-03-17 19:18:26.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35551 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35551 (-167.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35548 (-167.8 uncal um), Max = 35556 (-167.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:18:26.088 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35551, posNoise = 5, negNoise = 3
17-03-17 19:18:26.088 -07 000000610 INF: Z Motor: After move to -0.168698, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:26.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:18:26.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:26.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:26.088 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:26.088 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:26.088 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:18:26.088 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:18:26.088 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:26.088 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:18:26.088 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:18:26.088 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:18:26.088 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:18:26.088 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:18:26.098 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:18:26.098 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:18:26.098 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:18:26.098 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:18:26.108 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:18:26.108 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:18:26.108 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:18:26.108 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:18:26.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37029 150\n [Camera]
17-03-17 19:18:26.308 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:18:26.678 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:18:26.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:18:26.708 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:18:26.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:18:26.718 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:26.718 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:26.718 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:18:26.718 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:18:26.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:18:26.718 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:26.718 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:26.718 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:18:26.908 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37029 785
17-03-17 19:18:27.058 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:18:27.108 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 19:18:27.108 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:18:27.108 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:27.108 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:18:27.108 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:18:27.108 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:27.108 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:27.108 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:27.108 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:18:27.118 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:18:27.248 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:18:27.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:18:27.248 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:27.248 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:27.248 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:18:27.248 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:18:27.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:18:27.248 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:27.248 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:27.248 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:18:27.438 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-17 19:18:27.438 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:18:27.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37029 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-17 19:18:27.438 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.169367
17-03-17 19:18:27.438 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16937 mm
17-03-17 19:18:27.438 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:18:27.448 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:18:27.448 -07 000000593 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 19:18:27.448 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:27.448 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 36998, sync = True, waitForSettling = False)
17-03-17 19:18:27.448 -07 000000512 INF: Z Motor: Moving to -0.169366 mm, started at -0.168711 mm, distance = -0.66 um
17-03-17 19:18:27.448 -07 000000627 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:18:27.458 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:18:27.458 -07 000000593 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:27.458 -07 000000593 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:18:27.458 -07 000000593 INF: Y Motor: Moving 1340 steps-15
17-03-17 19:18:27.458 -07 000000512 INF: FPGA: Xmit ZDACW 36998\n [Z Motor]
17-03-17 19:18:27.458 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 19:18:27.468 -07 000000512 INF: FPGA: 'ZDACW 36998' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:18:27.468 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:18:27.478 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:27.478 -07 000000438 INF: FPGA: Recv ZDACR 36998
17-03-17 19:18:27.488 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:18:27.488 -07 000000512 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:18:27.628 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:18:27.628 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:18:27.628 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:27.628 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:27.628 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:18:27.628 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:18:27.628 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:27.638 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:27.638 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:18:27.638 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:18:27.838 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:18:27.838 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-17 19:18:27.878 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:27.878 -07 000000476 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:18:27.888 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:18:27.888 -07 000000593 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:27.888 -07 000000593 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 19:18:27.888 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-17 19:18:28.798 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.004458,
17-03-17 19:18:28.838 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:28.838 -07 000000512 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:18:28.848 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:28.848 -07 000000593 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:28.868 -07 000000593 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:18:28.868 -07 000000593 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:18:28.868 -07 000000593 INF: Y Motor: Moved to 69.0273 after 1422 ms (table move)
17-03-17 19:18:28.868 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169366 mm (DAC = 36998)
17-03-17 19:18:28.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:28.878 -07 000000476 INF: FPGA: Recv ZSGSRD 35656
17-03-17 19:18:28.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 19:18:28.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:28.878 -07 000000593 INF: FPGA: Recv ZSGSRD 35650
17-03-17 19:18:28.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:18:28.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:28.888 -07 000000512 INF: FPGA: Recv ZSGSRD 35650
17-03-17 19:18:28.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:28.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:28.898 -07 000000593 INF: FPGA: Recv ZSGSRD 35663
17-03-17 19:18:28.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:28.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:28.908 -07 000000627 INF: FPGA: Recv ZSGSRD 35652
17-03-17 19:18:28.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:28.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:28.918 -07 000000593 INF: FPGA: Recv ZSGSRD 35655
17-03-17 19:18:28.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:28.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:28.928 -07 000000476 INF: FPGA: Recv ZSGSRD 35655
17-03-17 19:18:28.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:28.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:28.938 -07 000000593 INF: FPGA: Recv ZSGSRD 35652
17-03-17 19:18:28.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:28.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:28.948 -07 000000476 INF: FPGA: Recv ZSGSRD 35654
17-03-17 19:18:28.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:28.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:28.958 -07 000000593 INF: FPGA: Recv ZSGSRD 35655
17-03-17 19:18:28.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:28.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:28.968 -07 000000478 INF: FPGA: Recv ZPIEZORD 31637
17-03-17 19:18:28.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:28.978 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -8.9 V.
17-03-17 19:18:28.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35654 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35654 (-168.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35650 (-168.5 uncal um), Max = 35663 (-168.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:18:28.978 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35654, posNoise = 9, negNoise = 4
17-03-17 19:18:28.978 -07 000000610 INF: Z Motor: After move to -0.169366, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:28.978 -07 000000610 INF: Z Motor: Settle wait time = 1423 ms, measure time = 105 ms (allowed 150 ms), total time = 1528 ms
17-03-17 19:18:28.978 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:18:29.028 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-17 19:18:29.028 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:18:29.028 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.16937221171348. ----------
17-03-17 19:18:29.028 -07 000000610 INF: Cycle	24	Tile	12	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:18:29.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36821, sync = True, waitForSettling = True)
17-03-17 19:18:29.028 -07 000000610 INF: Z Motor: Moving to -0.168556 mm, started at -0.169372 mm, distance = 0.82 um
17-03-17 19:18:29.028 -07 000000610 INF: FPGA: Xmit ZDACW 36821\n [Z Motor]
17-03-17 19:18:29.028 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 19:18:29.038 -07 000000610 INF: FPGA: 'ZDACW 36821' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:18:29.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:29.038 -07 000000438 INF: FPGA: Recv ZDACR 36821
17-03-17 19:18:29.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:29.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:18:29.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:29.198 -07 000000476 INF: FPGA: Recv ZSGSRD 35531
17-03-17 19:18:29.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:29.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:29.208 -07 000000593 INF: FPGA: Recv ZSGSRD 35524
17-03-17 19:18:29.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:29.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:29.218 -07 000000438 INF: FPGA: Recv ZSGSRD 35530
17-03-17 19:18:29.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:29.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:29.228 -07 000000512 INF: FPGA: Recv ZSGSRD 35527
17-03-17 19:18:29.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:29.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:29.238 -07 000000438 INF: FPGA: Recv ZSGSRD 35530
17-03-17 19:18:29.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:29.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:29.248 -07 000000593 INF: FPGA: Recv ZSGSRD 35530
17-03-17 19:18:29.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:29.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:29.258 -07 000000627 INF: FPGA: Recv ZSGSRD 35532
17-03-17 19:18:29.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:29.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:29.268 -07 000000478 INF: FPGA: Recv ZSGSRD 35530
17-03-17 19:18:29.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:29.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:29.278 -07 000000476 INF: FPGA: Recv ZSGSRD 35532
17-03-17 19:18:29.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:29.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:29.288 -07 000000438 INF: FPGA: Recv ZSGSRD 35532
17-03-17 19:18:29.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:29.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:29.298 -07 000000476 INF: FPGA: Recv ZPIEZORD 31432
17-03-17 19:18:29.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:29.308 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.619 V. Piezo Error = -9.0 V.
17-03-17 19:18:29.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35530 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35530 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35524 (-167.7 uncal um), Max = 35532 (-167.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:18:29.308 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35530, posNoise = 2, negNoise = 6
17-03-17 19:18:29.308 -07 000000610 INF: Z Motor: After move to -0.168556, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:29.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:18:29.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:29.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:29.308 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:29.308 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:29.308 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:18:29.308 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:29.308 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:18:29.308 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:18:29.308 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:18:29.308 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:18:29.308 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:18:29.308 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:18:29.318 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:18:29.318 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:18:29.318 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:18:29.318 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:18:29.328 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:18:29.328 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:18:29.328 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:18:29.328 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:18:29.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 36998 150\n [Camera]
17-03-17 19:18:29.528 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:18:29.928 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:18:29.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:18:29.928 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:29.928 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:29.928 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 19:18:29.938 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:18:29.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:18:29.938 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:29.938 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:29.938 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:18:30.128 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36998 785
17-03-17 19:18:30.278 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:18:30.308 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:18:30.308 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:18:30.308 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:30.308 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:18:30.308 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:18:30.308 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:30.308 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:30.318 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:30.318 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:18:30.318 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:18:30.468 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:18:30.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:18:30.468 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:30.468 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:30.468 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 19:18:30.478 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:18:30.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:18:30.478 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:30.478 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:30.478 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 19:18:30.658 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:18:30.658 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:18:30.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 36998 150' command took 2 ms to send, 1315 ms to get response, and 1326 ms overall
17-03-17 19:18:30.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:18:30.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.168575609407902. ------
17-03-17 19:18:30.668 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:30.668 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17488 mm
17-03-17 19:18:30.798 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:18:30.798 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:30.798 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 131 ms overall
17-03-17 19:18:30.798 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:18:30.798 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:18:30.798 -07 000000480 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 19:18:30.798 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38202, sync = True, waitForSettling = False)
17-03-17 19:18:30.798 -07 000000593 INF: Z Motor: Moving to -0.174878 mm, started at -0.168576 mm, distance = -6.30 um
17-03-17 19:18:30.808 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:30.808 -07 000000476 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:18:30.818 -07 000000593 INF: FPGA: Xmit ZDACW 38202\n [Z Motor]
17-03-17 19:18:30.818 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:18:30.818 -07 000000480 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:30.818 -07 000000480 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:18:30.818 -07 000000480 INF: Y Motor: Moving 1352 steps-31
17-03-17 19:18:30.818 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:18:30.828 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:18:30.828 -07 000000593 INF: FPGA: 'ZDACW 38202' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:18:30.838 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:30.838 -07 000000429 INF: FPGA: Recv ZDACR 38202
17-03-17 19:18:30.848 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:18:30.848 -07 000000593 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 19:18:30.878 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 19:18:30.878 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:18:30.878 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:30.878 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 19:18:30.878 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:18:30.878 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:30.888 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:18:30.888 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:18:30.888 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 19:18:30.888 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:18:30.998 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:18:30.998 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 19:18:31.198 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 19:18:31.198 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:18:31.238 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:31.238 -07 000000438 INF: FPGA: Recv YRDPOS 143080
17-03-17 19:18:31.248 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:18:31.248 -07 000000480 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:31.248 -07 000000480 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:18:31.248 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.184 mm/sec
17-03-17 19:18:31.678 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:18:31.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:18:32.198 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:32.198 -07 000000626 INF: FPGA: Recv YRDPOS 143080
17-03-17 19:18:32.208 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:32.208 -07 000000480 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:32.228 -07 000000480 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:18:32.228 -07 000000480 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:18:32.228 -07 000000480 INF: Y Motor: Moved to 69.8633 after 1424 ms (table move)
17-03-17 19:18:32.228 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174878 mm (DAC = 38202)
17-03-17 19:18:32.228 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:32.228 -07 000000551 INF: FPGA: Recv ZSGSRD 36511
17-03-17 19:18:32.238 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:18:32.238 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:32.238 -07 000000512 INF: FPGA: Recv ZSGSRD 36517
17-03-17 19:18:32.248 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:32.248 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:32.248 -07 000000431 INF: FPGA: Recv ZSGSRD 36517
17-03-17 19:18:32.258 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:32.258 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:32.258 -07 000000541 INF: FPGA: Recv ZSGSRD 36512
17-03-17 19:18:32.268 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:32.268 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:32.268 -07 000000382 INF: FPGA: Recv ZSGSRD 36503
17-03-17 19:18:32.278 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:32.278 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:32.278 -07 000000486 INF: FPGA: Recv ZSGSRD 36513
17-03-17 19:18:32.288 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:32.288 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:32.288 -07 000000626 INF: FPGA: Recv ZSGSRD 36510
17-03-17 19:18:32.298 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:32.298 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:32.298 -07 000000593 INF: FPGA: Recv ZSGSRD 36505
17-03-17 19:18:32.308 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:32.308 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:32.308 -07 000000626 INF: FPGA: Recv ZSGSRD 36510
17-03-17 19:18:32.318 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:32.318 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:32.318 -07 000000593 INF: FPGA: Recv ZSGSRD 36514
17-03-17 19:18:32.328 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:32.328 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:32.328 -07 000000486 INF: FPGA: Recv ZPIEZORD 32779
17-03-17 19:18:32.338 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:32.338 -07 000000433 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.829 V. Piezo Error = -8.3 V.
17-03-17 19:18:32.338 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36511 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36512 (-174.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36503 (-173.9 uncal um), Max = 36517 (-174.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:18:32.338 -07 000000433 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36511, posNoise = 6, negNoise = 8
17-03-17 19:18:32.338 -07 000000433 INF: Z Motor: After move to -0.174878, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:32.338 -07 000000433 INF: Z Motor: Settle wait time = 1427 ms, measure time = 107 ms (allowed 150 ms), total time = 1534 ms
17-03-17 19:18:32.338 -07 000000433 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:18:32.388 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1718 ms
17-03-17 19:18:32.388 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:18:32.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:32.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:32.388 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:32.388 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:32.388 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:18:32.388 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:32.388 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:18:32.388 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:18:32.398 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:18:32.398 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:18:32.408 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:18:32.408 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:18:32.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:18:32.458 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:18:32.658 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:18:32.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:18:32.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:18:32.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 19:18:32.698 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:18:32.698 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 19:18:32.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 19:18:32.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:18:32.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:32.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:18:32.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:18:32.798 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:32.798 -07 000000424 INF: Autofocus start
17-03-17 19:18:32.798 -07 000000424 INF: MeasureProfile start
17-03-17 19:18:32.798 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:32.808 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:18:32.808 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:18:32.808 -07 000000424 INF: MeasureProfile done
17-03-17 19:18:32.808 -07 000000424 INF: X=128  Z correction [um]=0.5828849
17-03-17 19:18:32.808 -07 000000424 INF: Autofocus finished
17-03-17 19:18:33.008 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:18:33.008 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:18:33.008 -07 000000610 INF: Suspending Skipping AutoFocus for the next 6 cycles.
17-03-17 19:18:33.008 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.174877761518969. ----------
17-03-17 19:18:33.008 -07 000000610 INF: Cycle	24	Tile	13	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:18:33.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36842, sync = True, waitForSettling = True)
17-03-17 19:18:33.018 -07 000000610 INF: Z Motor: Moving to -0.168652 mm, started at -0.174878 mm, distance = 6.23 um
17-03-17 19:18:33.018 -07 000000610 INF: FPGA: Xmit ZDACW 36842\n [Z Motor]
17-03-17 19:18:33.018 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:18:33.028 -07 000000610 INF: FPGA: 'ZDACW 36842' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:33.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:33.028 -07 000000626 INF: FPGA: Recv ZDACR 36842
17-03-17 19:18:33.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:33.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:18:33.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:33.188 -07 000000593 INF: FPGA: Recv ZSGSRD 35544
17-03-17 19:18:33.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:33.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:33.198 -07 000000626 INF: FPGA: Recv ZSGSRD 35540
17-03-17 19:18:33.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:33.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:33.208 -07 000000593 INF: FPGA: Recv ZSGSRD 35545
17-03-17 19:18:33.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:33.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:33.218 -07 000000626 INF: FPGA: Recv ZSGSRD 35543
17-03-17 19:18:33.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:33.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:33.228 -07 000000424 INF: FPGA: Recv ZSGSRD 35542
17-03-17 19:18:33.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:33.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:33.238 -07 000000433 INF: FPGA: Recv ZSGSRD 35547
17-03-17 19:18:33.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:18:33.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:33.248 -07 000000593 INF: FPGA: Recv ZSGSRD 35551
17-03-17 19:18:33.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:33.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:33.258 -07 000000424 INF: FPGA: Recv ZSGSRD 35545
17-03-17 19:18:33.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:33.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:33.268 -07 000000480 INF: FPGA: Recv ZSGSRD 35540
17-03-17 19:18:33.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:33.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:33.278 -07 000000433 INF: FPGA: Recv ZSGSRD 35547
17-03-17 19:18:33.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:33.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:33.288 -07 000000593 INF: FPGA: Recv ZPIEZORD 31503
17-03-17 19:18:33.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:33.298 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -8.9 V.
17-03-17 19:18:33.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35544 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35544 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35540 (-167.8 uncal um), Max = 35551 (-167.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:18:33.298 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35544, posNoise = 7, negNoise = 4
17-03-17 19:18:33.298 -07 000000610 INF: Z Motor: After move to -0.168652, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:33.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:18:33.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:33.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:33.298 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:33.298 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:33.298 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:18:33.298 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:33.298 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:18:33.298 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:18:33.298 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:18:33.298 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:18:33.298 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:18:33.298 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:18:33.298 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:18:33.298 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:18:33.308 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:18:33.308 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:18:33.308 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:18:33.308 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:18:33.318 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:18:33.318 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:18:33.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37019 150\n [Camera]
17-03-17 19:18:33.518 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:18:33.918 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:18:33.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:18:33.918 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:33.918 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:18:33.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:18:33.918 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:33.918 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:33.918 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1060376624, 0x0, 418435064) start.
17-03-17 19:18:33.928 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:33.928 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:18:34.108 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37019 785
17-03-17 19:18:34.158 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.994908,
17-03-17 19:18:34.258 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:18:34.308 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1060376624, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:18:34.308 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:18:34.308 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:34.308 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:18:34.308 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:18:34.308 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:34.308 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:34.308 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:18:34.308 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:18:34.318 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:18:34.448 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:18:34.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:18:34.448 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:34.448 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:34.448 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1095798888, 0x0, 391868352) start.
17-03-17 19:18:34.458 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:18:34.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:18:34.458 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:34.568 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:34.568 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:18:34.638 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-17 19:18:34.648 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:18:34.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37019 150' command took 2 ms to send, 1320 ms to get response, and 1326 ms overall
17-03-17 19:18:34.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:18:34.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.168665548377886. ------
17-03-17 19:18:34.648 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:34.648 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17506 mm
17-03-17 19:18:34.648 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:18:34.648 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:34.648 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:18:34.648 -07 000000438 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 19:18:34.648 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38241, sync = True, waitForSettling = False)
17-03-17 19:18:34.648 -07 000000482 INF: Z Motor: Moving to -0.175056 mm, started at -0.168666 mm, distance = -6.39 um
17-03-17 19:18:34.658 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:34.658 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:18:34.658 -07 000000424 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:18:34.668 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:18:34.668 -07 000000438 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:34.668 -07 000000482 INF: FPGA: Xmit ZDACW 38241\n [Z Motor]
17-03-17 19:18:34.668 -07 000000438 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:18:34.668 -07 000000438 INF: Y Motor: Moving 1342 steps-19
17-03-17 19:18:34.668 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 19:18:34.678 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:18:34.678 -07 000000482 INF: FPGA: 'ZDACW 38241' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 19:18:34.688 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:18:34.698 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:34.698 -07 000000512 INF: FPGA: Recv ZDACR 38241
17-03-17 19:18:34.708 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:18:34.708 -07 000000482 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 19:18:34.828 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1095798888, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:18:34.828 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:18:34.828 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:34.838 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:18:34.838 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:18:34.878 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:18:34.878 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall
17-03-17 19:18:34.948 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:18:34.948 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:18:34.948 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:34.948 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:18:34.958 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-17 19:18:35.058 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 19:18:35.058 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:18:35.098 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:35.098 -07 000000486 INF: FPGA: Recv YRDPOS 144770
17-03-17 19:18:35.108 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:18:35.108 -07 000000438 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:35.108 -07 000000438 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:18:35.108 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.125 mm/sec
17-03-17 19:18:36.058 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:36.058 -07 000000433 INF: FPGA: Recv YRDPOS 144770
17-03-17 19:18:36.068 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:36.068 -07 000000438 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:36.088 -07 000000438 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:18:36.088 -07 000000438 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:18:36.088 -07 000000438 INF: Y Motor: Moved to 70.6885 after 1431 ms (table move)
17-03-17 19:18:36.088 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175056 mm (DAC = 38241)
17-03-17 19:18:36.088 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:36.088 -07 000000512 INF: FPGA: Recv ZSGSRD 36543
17-03-17 19:18:36.098 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:18:36.098 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:36.098 -07 000000512 INF: FPGA: Recv ZSGSRD 36533
17-03-17 19:18:36.108 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:36.108 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:36.108 -07 000000512 INF: FPGA: Recv ZSGSRD 36544
17-03-17 19:18:36.118 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:36.118 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:36.118 -07 000000438 INF: FPGA: Recv ZSGSRD 36542
17-03-17 19:18:36.128 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:36.128 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:36.128 -07 000000438 INF: FPGA: Recv ZSGSRD 36545
17-03-17 19:18:36.138 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:36.138 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:36.138 -07 000000438 INF: FPGA: Recv ZSGSRD 36541
17-03-17 19:18:36.148 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:36.148 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:36.148 -07 000000438 INF: FPGA: Recv ZSGSRD 36543
17-03-17 19:18:36.158 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:36.158 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:36.158 -07 000000438 INF: FPGA: Recv ZSGSRD 36543
17-03-17 19:18:36.168 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:36.168 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:36.168 -07 000000438 INF: FPGA: Recv ZSGSRD 36543
17-03-17 19:18:36.178 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:36.178 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:36.178 -07 000000627 INF: FPGA: Recv ZSGSRD 36538
17-03-17 19:18:36.188 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:36.188 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:36.188 -07 000000627 INF: FPGA: Recv ZPIEZORD 32840
17-03-17 19:18:36.198 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:36.198 -07 000000382 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.835 V. Piezo Error = -8.2 V.
17-03-17 19:18:36.198 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36542 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36543 (-174.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36533 (-174.1 uncal um), Max = 36545 (-174.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:18:36.198 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36542, posNoise = 3, negNoise = 9
17-03-17 19:18:36.198 -07 000000382 INF: Z Motor: After move to -0.175056, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:36.198 -07 000000382 INF: Z Motor: Settle wait time = 1435 ms, measure time = 105 ms (allowed 150 ms), total time = 1540 ms
17-03-17 19:18:36.198 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:18:36.248 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 19:18:36.248 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:18:36.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:36.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:36.248 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:36.248 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:36.248 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:18:36.248 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:36.248 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:18:36.248 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:18:36.258 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:18:36.258 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:18:36.258 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:18:36.258 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:18:36.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:18:36.308 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:18:36.508 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:18:36.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:18:36.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:18:36.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:18:36.548 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:18:36.548 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 19:18:36.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 287 ms overall
17-03-17 19:18:36.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:18:36.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:36.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:18:36.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 19:18:36.648 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:36.648 -07 000000486 INF: Autofocus start
17-03-17 19:18:36.648 -07 000000486 INF: MeasureProfile start
17-03-17 19:18:36.648 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:36.658 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:18:36.658 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:18:36.658 -07 000000486 INF: MeasureProfile done
17-03-17 19:18:36.658 -07 000000486 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:18:36.658 -07 000000486 INF: Autofocus finished
17-03-17 19:18:36.678 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:18:36.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:18:36.858 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:18:36.858 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:18:36.858 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.175076912095364. ----------
17-03-17 19:18:36.858 -07 000000610 INF: Cycle	24	Tile	14	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:18:36.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36738, sync = True, waitForSettling = True)
17-03-17 19:18:36.868 -07 000000610 INF: Z Motor: Moving to -0.168176 mm, started at -0.175077 mm, distance = 6.90 um
17-03-17 19:18:36.868 -07 000000610 INF: FPGA: Xmit ZDACW 36738\n [Z Motor]
17-03-17 19:18:36.868 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:18:36.878 -07 000000610 INF: FPGA: 'ZDACW 36738' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:18:36.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:36.878 -07 000000627 INF: FPGA: Recv ZDACR 36738
17-03-17 19:18:36.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:36.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:18:37.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:37.038 -07 000000438 INF: FPGA: Recv ZSGSRD 35472
17-03-17 19:18:37.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:37.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:37.048 -07 000000382 INF: FPGA: Recv ZSGSRD 35472
17-03-17 19:18:37.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:37.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:37.058 -07 000000626 INF: FPGA: Recv ZSGSRD 35467
17-03-17 19:18:37.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:37.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:37.068 -07 000000626 INF: FPGA: Recv ZSGSRD 35471
17-03-17 19:18:37.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:37.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:37.078 -07 000000382 INF: FPGA: Recv ZSGSRD 35470
17-03-17 19:18:37.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:37.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:37.088 -07 000000626 INF: FPGA: Recv ZSGSRD 35472
17-03-17 19:18:37.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:37.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:37.098 -07 000000627 INF: FPGA: Recv ZSGSRD 35467
17-03-17 19:18:37.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:37.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:37.108 -07 000000626 INF: FPGA: Recv ZSGSRD 35475
17-03-17 19:18:37.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:37.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:37.118 -07 000000433 INF: FPGA: Recv ZSGSRD 35467
17-03-17 19:18:37.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:37.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:37.128 -07 000000382 INF: FPGA: Recv ZSGSRD 35470
17-03-17 19:18:37.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:37.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:37.138 -07 000000627 INF: FPGA: Recv ZPIEZORD 31403
17-03-17 19:18:37.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:37.148 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.606 V. Piezo Error = -9.0 V.
17-03-17 19:18:37.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35470 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35470 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35467 (-167.3 uncal um), Max = 35475 (-167.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:18:37.148 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35470, posNoise = 5, negNoise = 3
17-03-17 19:18:37.148 -07 000000610 INF: Z Motor: After move to -0.168176, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:37.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:18:37.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:37.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:37.148 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:37.148 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:18:37.148 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:37.148 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:18:37.148 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:18:37.148 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:37.148 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:18:37.158 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:18:37.158 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:18:37.158 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:18:37.158 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:18:37.158 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:18:37.158 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:18:37.158 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:18:37.168 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:18:37.168 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:18:37.168 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:18:37.168 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:18:37.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 36915 150\n [Camera]
17-03-17 19:18:37.368 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:18:37.768 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:18:37.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:18:37.778 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:37.778 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:37.778 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:18:37.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:18:37.778 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2420328552, 0x0, 391868352) start.
17-03-17 19:18:37.778 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:37.788 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:37.788 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2455750816, 0x0, 418435064) start.
17-03-17 19:18:37.968 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36915 785
17-03-17 19:18:38.118 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:18:38.168 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2455750816, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:18:38.168 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:18:38.168 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:38.168 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2420328552, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:18:38.168 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:18:38.168 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:38.168 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:38.168 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:38.168 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:18:38.178 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:18:38.308 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:18:38.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:18:38.308 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:38.308 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:18:38.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:18:38.308 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:38.308 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:38.308 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1131221152, 0x0, 418435064) start.
17-03-17 19:18:38.318 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:38.318 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1060376624, 0x0, 391868352) start.
17-03-17 19:18:38.498 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:18:38.498 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:18:38.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 36915 150' command took 2 ms to send, 1325 ms to get response, and 1329 ms overall
17-03-17 19:18:38.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:18:38.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.168190156679396. ------
17-03-17 19:18:38.508 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:38.508 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17483 mm
17-03-17 19:18:38.508 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:18:38.508 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:38.508 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:18:38.508 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38191, sync = True, waitForSettling = False)
17-03-17 19:18:38.508 -07 000000424 INF: Z Motor: Moving to -0.174827 mm, started at -0.168190 mm, distance = -6.64 um
17-03-17 19:18:38.508 -07 000000478 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 19:18:38.518 -07 000000424 INF: FPGA: Xmit ZDACW 38191\n [Z Motor]
17-03-17 19:18:38.518 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:38.518 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:18:38.528 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:38.528 -07 000000424 INF: FPGA: 'ZDACW 38191' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:18:38.528 -07 000000438 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:18:38.538 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:18:38.538 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:18:38.538 -07 000000478 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:38.538 -07 000000478 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:18:38.538 -07 000000478 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:18:38.548 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:38.548 -07 000000438 INF: FPGA: Recv ZDACR 38191
17-03-17 19:18:38.558 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:18:38.558 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:18:38.558 -07 000000424 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 19:18:38.708 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1131221152, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:18:38.708 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:18:38.708 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:38.708 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1060376624, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:18:38.708 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:18:38.718 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:38.718 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:38.718 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:38.718 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:18:38.718 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:18:38.738 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:18:38.738 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:18:38.928 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 19:18:38.928 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:18:38.968 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:38.968 -07 000000627 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:18:38.978 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:38.978 -07 000000478 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:38.978 -07 000000478 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:18:38.978 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.142 mm/sec
17-03-17 19:18:39.518 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.004458,
17-03-17 19:18:39.928 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:39.928 -07 000000593 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:18:39.938 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:39.938 -07 000000478 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:39.958 -07 000000478 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:18:39.958 -07 000000478 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:18:39.958 -07 000000478 INF: Y Motor: Moved to 71.5190 after 1446 ms (table move)
17-03-17 19:18:39.958 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174827 mm (DAC = 38191)
17-03-17 19:18:39.958 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:39.958 -07 000000486 INF: FPGA: Recv ZSGSRD 36499
17-03-17 19:18:39.968 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:18:39.968 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:39.968 -07 000000438 INF: FPGA: Recv ZSGSRD 36499
17-03-17 19:18:39.978 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:39.978 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:39.978 -07 000000593 INF: FPGA: Recv ZSGSRD 36503
17-03-17 19:18:39.988 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:39.988 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:39.988 -07 000000382 INF: FPGA: Recv ZSGSRD 36514
17-03-17 19:18:39.998 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:39.998 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:39.998 -07 000000438 INF: FPGA: Recv ZSGSRD 36512
17-03-17 19:18:40.008 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:40.008 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:40.008 -07 000000478 INF: FPGA: Recv ZSGSRD 36513
17-03-17 19:18:40.018 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:40.018 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:40.018 -07 000000382 INF: FPGA: Recv ZSGSRD 36506
17-03-17 19:18:40.028 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:40.028 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:40.028 -07 000000478 INF: FPGA: Recv ZSGSRD 36502
17-03-17 19:18:40.038 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:40.038 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:40.038 -07 000000382 INF: FPGA: Recv ZSGSRD 36502
17-03-17 19:18:40.048 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:40.048 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:40.048 -07 000000486 INF: FPGA: Recv ZSGSRD 36506
17-03-17 19:18:40.058 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:18:40.058 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:40.058 -07 000000438 INF: FPGA: Recv ZPIEZORD 32770
17-03-17 19:18:40.068 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:40.068 -07 000000433 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.3 V.
17-03-17 19:18:40.068 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36506 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36504 (-173.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36499 (-173.9 uncal um), Max = 36514 (-174.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:18:40.068 -07 000000433 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36506, posNoise = 8, negNoise = 7
17-03-17 19:18:40.068 -07 000000433 INF: Z Motor: After move to -0.174827, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:40.068 -07 000000433 INF: Z Motor: Settle wait time = 1449 ms, measure time = 106 ms (allowed 150 ms), total time = 1555 ms
17-03-17 19:18:40.068 -07 000000433 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:18:40.118 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 19:18:40.118 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:18:40.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:40.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:40.118 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:40.118 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:40.118 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:18:40.118 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:40.118 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:18:40.118 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:18:40.128 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:18:40.128 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:18:40.138 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:18:40.138 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:18:40.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:18:40.188 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:18:40.388 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:18:40.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:18:40.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:18:40.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2508048144, 0x0, 559484976) start.
17-03-17 19:18:40.418 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:18:40.428 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 19:18:40.428 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 19:18:40.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2508048144, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:18:40.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:40.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:18:40.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 19:18:40.528 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:40.528 -07 000000382 INF: Autofocus start
17-03-17 19:18:40.528 -07 000000382 INF: MeasureProfile start
17-03-17 19:18:40.528 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:40.538 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:18:40.538 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:18:40.538 -07 000000382 INF: MeasureProfile done
17-03-17 19:18:40.538 -07 000000382 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:18:40.538 -07 000000382 INF: Autofocus finished
17-03-17 19:18:40.738 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:18:40.738 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:18:40.738 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.17484564045826. ----------
17-03-17 19:18:40.738 -07 000000610 INF: Cycle	24	Tile	15	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:18:40.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36688, sync = True, waitForSettling = True)
17-03-17 19:18:40.748 -07 000000610 INF: Z Motor: Moving to -0.167947 mm, started at -0.174846 mm, distance = 6.90 um
17-03-17 19:18:40.748 -07 000000610 INF: FPGA: Xmit ZDACW 36688\n [Z Motor]
17-03-17 19:18:40.748 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:18:40.758 -07 000000610 INF: FPGA: 'ZDACW 36688' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:40.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:40.758 -07 000000476 INF: FPGA: Recv ZDACR 36688
17-03-17 19:18:40.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:40.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:18:40.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:40.918 -07 000000478 INF: FPGA: Recv ZSGSRD 35433
17-03-17 19:18:40.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:40.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:40.928 -07 000000433 INF: FPGA: Recv ZSGSRD 35439
17-03-17 19:18:40.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:40.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:40.938 -07 000000627 INF: FPGA: Recv ZSGSRD 35433
17-03-17 19:18:40.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:40.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:40.948 -07 000000478 INF: FPGA: Recv ZSGSRD 35429
17-03-17 19:18:40.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:40.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:40.958 -07 000000433 INF: FPGA: Recv ZSGSRD 35439
17-03-17 19:18:40.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:40.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:40.968 -07 000000478 INF: FPGA: Recv ZSGSRD 35434
17-03-17 19:18:40.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:40.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:40.978 -07 000000627 INF: FPGA: Recv ZSGSRD 35433
17-03-17 19:18:40.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:40.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:40.988 -07 000000478 INF: FPGA: Recv ZSGSRD 35430
17-03-17 19:18:40.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:40.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:40.998 -07 000000433 INF: FPGA: Recv ZSGSRD 35432
17-03-17 19:18:41.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:41.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:41.008 -07 000000424 INF: FPGA: Recv ZSGSRD 35442
17-03-17 19:18:41.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:41.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:41.018 -07 000000627 INF: FPGA: Recv ZPIEZORD 31330
17-03-17 19:18:41.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:41.028 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.598 V. Piezo Error = -9.1 V.
17-03-17 19:18:41.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35434 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35433 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35429 (-167.1 uncal um), Max = 35442 (-167.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:18:41.028 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35434, posNoise = 8, negNoise = 5
17-03-17 19:18:41.028 -07 000000610 INF: Z Motor: After move to -0.167947, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:41.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:18:41.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:41.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:41.028 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:41.028 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:41.028 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:18:41.028 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:41.028 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:18:41.028 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:18:41.028 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:18:41.028 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:18:41.028 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:18:41.028 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:18:41.028 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:18:41.028 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:18:41.038 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:18:41.038 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:18:41.038 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:18:41.038 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:18:41.048 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:18:41.048 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:18:41.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 36865 150\n [Camera]
17-03-17 19:18:41.248 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:18:41.648 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:18:41.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:18:41.648 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:41.648 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:41.648 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:18:41.648 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:18:41.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:18:41.648 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:41.768 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:18:41.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:18:41.768 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:41.768 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:18:41.838 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36865 785
17-03-17 19:18:41.988 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:18:42.038 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:18:42.038 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:18:42.038 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:42.038 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:18:42.038 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:18:42.158 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 19:18:42.158 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:18:42.158 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:42.158 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:18:42.168 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 513 ms.
17-03-17 19:18:42.178 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:18:42.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:18:42.188 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:42.188 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:18:42.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:18:42.188 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:42.188 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:42.188 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:18:42.198 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:42.198 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 19:18:42.378 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:18:42.378 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:18:42.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 36865 150' command took 2 ms to send, 1321 ms to get response, and 1327 ms overall
17-03-17 19:18:42.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:18:42.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167958885042293. ------
17-03-17 19:18:42.378 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:42.378 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17385 mm
17-03-17 19:18:42.378 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:18:42.378 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:42.388 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:18:42.388 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:18:42.388 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 37977, sync = True, waitForSettling = False)
17-03-17 19:18:42.388 -07 000000438 INF: Z Motor: Moving to -0.173848 mm, started at -0.167959 mm, distance = -5.89 um
17-03-17 19:18:42.388 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:18:42.388 -07 000000424 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 19:18:42.398 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:42.398 -07 000000433 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:18:42.408 -07 000000438 INF: FPGA: Xmit ZDACW 37977\n [Z Motor]
17-03-17 19:18:42.408 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:18:42.408 -07 000000424 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:42.408 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:18:42.408 -07 000000424 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:18:42.408 -07 000000424 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:18:42.418 -07 000000438 INF: FPGA: 'ZDACW 37977' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:18:42.418 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:18:42.428 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:42.428 -07 000000541 INF: FPGA: Recv ZDACR 37977
17-03-17 19:18:42.438 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:18:42.438 -07 000000438 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 19:18:42.588 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:18:42.588 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:18:42.598 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:18:42.598 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:18:42.598 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:42.598 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 19:18:42.598 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:18:42.598 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:42.598 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:42.598 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 19:18:42.598 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:42.608 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 19:18:42.798 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:18:42.798 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 6 ms to send, 374 ms to get response, and 389 ms overall
17-03-17 19:18:42.828 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:42.828 -07 000000627 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:18:42.838 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:18:42.838 -07 000000424 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:42.838 -07 000000424 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:18:42.838 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.163 mm/sec
17-03-17 19:18:43.788 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:43.788 -07 000000476 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:18:43.798 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:43.798 -07 000000424 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:43.818 -07 000000424 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:18:43.818 -07 000000424 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:18:43.818 -07 000000424 INF: Y Motor: Moved to 72.3496 after 1430 ms (table move)
17-03-17 19:18:43.818 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173848 mm (DAC = 37977)
17-03-17 19:18:43.818 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:43.818 -07 000000424 INF: FPGA: Recv ZSGSRD 36351
17-03-17 19:18:43.828 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:18:43.828 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:43.828 -07 000000424 INF: FPGA: Recv ZSGSRD 36351
17-03-17 19:18:43.838 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:43.838 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:43.838 -07 000000486 INF: FPGA: Recv ZSGSRD 36358
17-03-17 19:18:43.848 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:43.848 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:43.848 -07 000000433 INF: FPGA: Recv ZSGSRD 36354
17-03-17 19:18:43.858 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:43.858 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:43.858 -07 000000433 INF: FPGA: Recv ZSGSRD 36350
17-03-17 19:18:43.868 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:43.868 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:43.868 -07 000000486 INF: FPGA: Recv ZSGSRD 36358
17-03-17 19:18:43.878 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:43.878 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:43.878 -07 000000486 INF: FPGA: Recv ZSGSRD 36352
17-03-17 19:18:43.888 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:43.888 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:43.888 -07 000000486 INF: FPGA: Recv ZSGSRD 36353
17-03-17 19:18:43.898 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:43.898 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:43.898 -07 000000424 INF: FPGA: Recv ZSGSRD 36353
17-03-17 19:18:43.908 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:43.908 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:43.908 -07 000000627 INF: FPGA: Recv ZSGSRD 36349
17-03-17 19:18:43.918 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:43.918 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:43.918 -07 000000433 INF: FPGA: Recv ZPIEZORD 32590
17-03-17 19:18:43.928 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:43.928 -07 000000382 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.795 V. Piezo Error = -8.3 V.
17-03-17 19:18:43.928 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36353 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36352 (-173.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36349 (-173.0 uncal um), Max = 36358 (-173.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:18:43.928 -07 000000382 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36353, posNoise = 5, negNoise = 4
17-03-17 19:18:43.928 -07 000000382 INF: Z Motor: After move to -0.173848, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:43.928 -07 000000382 INF: Z Motor: Settle wait time = 1434 ms, measure time = 105 ms (allowed 150 ms), total time = 1539 ms
17-03-17 19:18:43.928 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:18:43.978 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 19:18:43.978 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:18:43.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:43.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:43.978 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:43.978 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:43.978 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:18:43.978 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:43.978 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:18:43.988 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:18:43.988 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:18:43.988 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:18:43.998 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:18:43.998 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:18:43.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:18:44.048 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:18:44.238 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:18:44.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:18:44.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:18:44.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) start.
17-03-17 19:18:44.278 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:18:44.278 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 19:18:44.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 19:18:44.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:18:44.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:44.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:18:44.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:18:44.388 -07 000000486 INF: Autofocus start
17-03-17 19:18:44.388 -07 000000486 INF: MeasureProfile start
17-03-17 19:18:44.388 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:44.388 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:44.398 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:18:44.398 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:18:44.398 -07 000000486 INF: MeasureProfile done
17-03-17 19:18:44.398 -07 000000486 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:18:44.398 -07 000000486 INF: Autofocus finished
17-03-17 19:18:44.598 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:18:44.598 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:18:44.598 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173862736000571. ----------
17-03-17 19:18:44.598 -07 000000610 INF: Cycle	24	Tile	16	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:18:44.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36492, sync = True, waitForSettling = True)
17-03-17 19:18:44.608 -07 000000610 INF: Z Motor: Moving to -0.167050 mm, started at -0.173863 mm, distance = 6.81 um
17-03-17 19:18:44.608 -07 000000610 INF: FPGA: Xmit ZDACW 36492\n [Z Motor]
17-03-17 19:18:44.608 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 19:18:44.618 -07 000000610 INF: FPGA: 'ZDACW 36492' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:44.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:44.618 -07 000000476 INF: FPGA: Recv ZDACR 36492
17-03-17 19:18:44.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:44.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:18:44.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:44.778 -07 000000486 INF: FPGA: Recv ZSGSRD 35290
17-03-17 19:18:44.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:44.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:44.788 -07 000000627 INF: FPGA: Recv ZSGSRD 35298
17-03-17 19:18:44.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:44.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:44.798 -07 000000382 INF: FPGA: Recv ZSGSRD 35291
17-03-17 19:18:44.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:44.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:44.808 -07 000000593 INF: FPGA: Recv ZSGSRD 35290
17-03-17 19:18:44.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:18:44.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:44.818 -07 000000382 INF: FPGA: Recv ZSGSRD 35295
17-03-17 19:18:44.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:18:44.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:44.828 -07 000000433 INF: FPGA: Recv ZSGSRD 35292
17-03-17 19:18:44.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:44.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:44.838 -07 000000382 INF: FPGA: Recv ZSGSRD 35297
17-03-17 19:18:44.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:44.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:44.848 -07 000000424 INF: FPGA: Recv ZSGSRD 35293
17-03-17 19:18:44.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:44.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:44.858 -07 000000486 INF: FPGA: Recv ZSGSRD 35292
17-03-17 19:18:44.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:44.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:44.878 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.999021,
17-03-17 19:18:44.878 -07 000000627 INF: FPGA: Recv ZSGSRD 35292
17-03-17 19:18:44.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:18:44.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:44.908 -07 000000627 INF: FPGA: Recv ZPIEZORD 31161
17-03-17 19:18:44.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:18:44.918 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.568 V. Piezo Error = -9.1 V.
17-03-17 19:18:44.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35293 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35292 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35290 (-166.2 uncal um), Max = 35298 (-166.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:18:44.918 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35293, posNoise = 5, negNoise = 3
17-03-17 19:18:44.918 -07 000000610 INF: Z Motor: After move to -0.167050, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:44.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 310 ms)
17-03-17 19:18:44.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:44.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:44.918 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:44.918 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:44.918 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:18:44.918 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:44.918 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:18:44.918 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:18:44.918 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:18:44.918 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:18:44.918 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:18:44.918 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:18:44.928 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:18:44.928 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:18:44.928 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:18:44.928 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:18:44.928 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:18:44.928 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:18:44.938 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:18:44.938 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:18:44.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 36668 150\n [Camera]
17-03-17 19:18:45.138 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:18:45.538 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:18:45.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:18:45.538 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:45.538 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:45.538 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:18:45.538 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:18:45.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:18:45.538 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:45.658 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:45.658 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:18:45.728 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36668 785
17-03-17 19:18:45.878 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:18:45.928 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:18:45.928 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:18:45.928 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:45.928 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:45.928 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:18:46.048 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:18:46.048 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:18:46.048 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:46.048 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:18:46.058 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 514 ms.
17-03-17 19:18:46.078 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:18:46.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:18:46.078 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:46.078 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:18:46.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:18:46.078 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:46.078 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:46.078 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:18:46.088 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:46.088 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 19:18:46.258 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:18:46.268 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:18:46.268 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 36668 150' command took 2 ms to send, 1320 ms to get response, and 1327 ms overall
17-03-17 19:18:46.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:18:46.268 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.167053071130304. ------
17-03-17 19:18:46.268 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:46.268 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17362 mm
17-03-17 19:18:46.268 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:18:46.268 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:46.278 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:18:46.278 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:18:46.278 -07 000000627 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 19:18:46.278 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:18:46.278 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 37926, sync = True, waitForSettling = False)
17-03-17 19:18:46.278 -07 000000433 INF: Z Motor: Moving to -0.173614 mm, started at -0.167053 mm, distance = -6.56 um
17-03-17 19:18:46.288 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:46.288 -07 000000486 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:18:46.298 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:18:46.298 -07 000000627 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:46.298 -07 000000627 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:18:46.298 -07 000000627 INF: Y Motor: Moving 1349 steps-27
17-03-17 19:18:46.298 -07 000000433 INF: FPGA: Xmit ZDACW 37926\n [Z Motor]
17-03-17 19:18:46.298 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:18:46.308 -07 000000433 INF: FPGA: 'ZDACW 37926' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:18:46.308 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:18:46.318 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:46.318 -07 000000486 INF: FPGA: Recv ZDACR 37926
17-03-17 19:18:46.328 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:18:46.328 -07 000000433 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 19:18:46.478 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:18:46.478 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:18:46.478 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:46.478 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:18:46.478 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 19:18:46.478 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:18:46.478 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:18:46.478 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:46.478 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:46.478 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:18:46.488 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:18:46.498 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:18:46.678 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:18:46.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:18:46.678 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 19:18:46.678 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:18:46.718 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:46.718 -07 000000424 INF: FPGA: Recv YRDPOS 149864
17-03-17 19:18:46.728 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:18:46.728 -07 000000627 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:46.728 -07 000000627 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 19:18:46.728 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.178 mm/sec
17-03-17 19:18:47.678 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:47.678 -07 000000623 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:18:47.688 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:47.688 -07 000000627 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:47.708 -07 000000627 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:18:47.708 -07 000000627 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:18:47.708 -07 000000627 INF: Y Motor: Moved to 73.1763 after 1431 ms (table move)
17-03-17 19:18:47.708 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173614 mm (DAC = 37926)
17-03-17 19:18:47.708 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:47.708 -07 000000486 INF: FPGA: Recv ZSGSRD 36320
17-03-17 19:18:47.718 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:18:47.718 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:47.718 -07 000000429 INF: FPGA: Recv ZSGSRD 36316
17-03-17 19:18:47.728 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:47.728 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:47.728 -07 000000486 INF: FPGA: Recv ZSGSRD 36310
17-03-17 19:18:47.738 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:47.738 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:47.738 -07 000000623 INF: FPGA: Recv ZSGSRD 36317
17-03-17 19:18:47.748 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:47.748 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:47.748 -07 000000429 INF: FPGA: Recv ZSGSRD 36320
17-03-17 19:18:47.758 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:47.758 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:47.758 -07 000000627 INF: FPGA: Recv ZSGSRD 36322
17-03-17 19:18:47.768 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:47.768 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:47.768 -07 000000486 INF: FPGA: Recv ZSGSRD 36319
17-03-17 19:18:47.778 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:47.778 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:47.778 -07 000000424 INF: FPGA: Recv ZSGSRD 36309
17-03-17 19:18:47.788 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:47.788 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:47.788 -07 000000486 INF: FPGA: Recv ZSGSRD 36314
17-03-17 19:18:47.798 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:47.798 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:47.798 -07 000000627 INF: FPGA: Recv ZSGSRD 36312
17-03-17 19:18:47.808 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:47.808 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:47.808 -07 000000486 INF: FPGA: Recv ZPIEZORD 32565
17-03-17 19:18:47.818 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:47.818 -07 000000626 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.787 V. Piezo Error = -8.3 V.
17-03-17 19:18:47.818 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36316 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36316 (-172.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36309 (-172.7 uncal um), Max = 36322 (-172.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:18:47.818 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36316, posNoise = 6, negNoise = 7
17-03-17 19:18:47.818 -07 000000626 INF: Z Motor: After move to -0.173614, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:47.818 -07 000000626 INF: Z Motor: Settle wait time = 1434 ms, measure time = 107 ms (allowed 150 ms), total time = 1541 ms
17-03-17 19:18:47.818 -07 000000626 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:18:47.868 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 19:18:47.868 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:18:47.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:47.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:47.868 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:47.868 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:47.868 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:18:47.868 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:47.868 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:18:47.868 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:18:47.868 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:18:47.878 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:18:47.888 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:18:47.888 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:18:47.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:18:47.938 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:18:48.138 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:18:48.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:18:48.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:18:48.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) start.
17-03-17 19:18:48.178 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:18:48.178 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:18:48.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 19:18:48.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:18:48.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:48.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:18:48.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:18:48.278 -07 000000480 INF: Autofocus start
17-03-17 19:18:48.278 -07 000000480 INF: MeasureProfile start
17-03-17 19:18:48.278 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:48.278 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:48.288 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:18:48.288 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:18:48.288 -07 000000480 INF: MeasureProfile done
17-03-17 19:18:48.288 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:18:48.288 -07 000000480 INF: Autofocus finished
17-03-17 19:18:48.488 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:18:48.488 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:18:48.488 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.173625040151326. ----------
17-03-17 19:18:48.488 -07 000000610 INF: Cycle	24	Tile	17	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:18:48.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36441, sync = True, waitForSettling = True)
17-03-17 19:18:48.498 -07 000000610 INF: Z Motor: Moving to -0.166816 mm, started at -0.173625 mm, distance = 6.81 um
17-03-17 19:18:48.498 -07 000000610 INF: FPGA: Xmit ZDACW 36441\n [Z Motor]
17-03-17 19:18:48.498 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:18:48.508 -07 000000610 INF: FPGA: 'ZDACW 36441' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:48.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:48.508 -07 000000512 INF: FPGA: Recv ZDACR 36441
17-03-17 19:18:48.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:48.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:18:48.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:48.668 -07 000000433 INF: FPGA: Recv ZSGSRD 35260
17-03-17 19:18:48.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:48.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:48.678 -07 000000593 INF: FPGA: Recv ZSGSRD 35253
17-03-17 19:18:48.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:48.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:48.688 -07 000000480 INF: FPGA: Recv ZSGSRD 35261
17-03-17 19:18:48.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:18:48.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:48.698 -07 000000486 INF: FPGA: Recv ZSGSRD 35261
17-03-17 19:18:48.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:48.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:48.708 -07 000000431 INF: FPGA: Recv ZSGSRD 35263
17-03-17 19:18:48.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:48.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:48.718 -07 000000382 INF: FPGA: Recv ZSGSRD 35256
17-03-17 19:18:48.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:48.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:48.728 -07 000000480 INF: FPGA: Recv ZSGSRD 35254
17-03-17 19:18:48.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:48.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:48.738 -07 000000431 INF: FPGA: Recv ZSGSRD 35260
17-03-17 19:18:48.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:48.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:48.748 -07 000000382 INF: FPGA: Recv ZSGSRD 35253
17-03-17 19:18:48.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:48.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:48.758 -07 000000593 INF: FPGA: Recv ZSGSRD 35263
17-03-17 19:18:48.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:48.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:48.768 -07 000000431 INF: FPGA: Recv ZPIEZORD 31143
17-03-17 19:18:48.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:48.778 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.561 V. Piezo Error = -9.1 V.
17-03-17 19:18:48.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35258 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35260 (-166.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35253 (-165.9 uncal um), Max = 35263 (-166.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:18:48.778 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35258, posNoise = 5, negNoise = 5
17-03-17 19:18:48.778 -07 000000610 INF: Z Motor: After move to -0.166816, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:48.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:18:48.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:48.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:48.778 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:48.778 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:48.778 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:18:48.778 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:48.778 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:18:48.778 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:18:48.778 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:18:48.778 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:18:48.778 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:18:48.778 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:18:48.788 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:18:48.788 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:18:48.788 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:18:48.788 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:18:48.788 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:18:48.788 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:18:48.788 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:18:48.788 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:18:48.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 36618 150\n [Camera]
17-03-17 19:18:48.998 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:18:49.398 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:18:49.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:18:49.398 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:49.398 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:18:49.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:18:49.398 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:49.398 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:49.398 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:18:49.408 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:49.408 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:18:49.588 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36618 785
17-03-17 19:18:49.738 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:18:49.778 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:18:49.778 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:18:49.778 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:49.778 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 19:18:49.778 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 19:18:49.778 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:49.778 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:49.788 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:49.788 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:18:49.788 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:18:49.928 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:18:49.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:18:49.928 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:50.048 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:18:50.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:18:50.048 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:50.048 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:50.048 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1095798888, 0x0, 418435064) start.
17-03-17 19:18:50.048 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:50.048 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1060376624, 0x0, 391868352) start.
17-03-17 19:18:50.118 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:18:50.128 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:18:50.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 36618 150' command took 2 ms to send, 1320 ms to get response, and 1326 ms overall
17-03-17 19:18:50.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:18:50.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166828223705343. ------
17-03-17 19:18:50.128 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:50.128 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17330 mm
17-03-17 19:18:50.128 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:18:50.128 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:50.128 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 37856, sync = True, waitForSettling = False)
17-03-17 19:18:50.128 -07 000000623 INF: Z Motor: Moving to -0.173294 mm, started at -0.166828 mm, distance = -6.47 um
17-03-17 19:18:50.128 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:18:50.138 -07 000000480 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 19:18:50.138 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:18:50.138 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:50.138 -07 000000486 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:18:50.148 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:50.148 -07 000000480 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:50.148 -07 000000480 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:18:50.148 -07 000000480 INF: Y Motor: Moving 1354 steps-34
17-03-17 19:18:50.148 -07 000000623 INF: FPGA: Xmit ZDACW 37856\n [Z Motor]
17-03-17 19:18:50.148 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:18:50.158 -07 000000623 INF: FPGA: 'ZDACW 37856' command took 3 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 19:18:50.158 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:18:50.168 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:18:50.178 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:50.178 -07 000000431 INF: FPGA: Recv ZDACR 37856
17-03-17 19:18:50.188 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:18:50.188 -07 000000623 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 19:18:50.358 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:18:50.358 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 19:18:50.368 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.978563,
17-03-17 19:18:50.448 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1095798888, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:18:50.448 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:18:50.448 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:50.448 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1060376624, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:18:50.448 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:18:50.448 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:50.458 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:50.458 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:50.458 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-17 19:18:50.468 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:18:50.538 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 19:18:50.538 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 19:18:50.568 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:50.578 -07 000000627 INF: FPGA: Recv YRDPOS 151568
17-03-17 19:18:50.578 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:18:50.578 -07 000000480 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:50.578 -07 000000480 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:18:50.578 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.846 mm, average velocity = 2.143 mm/sec
17-03-17 19:18:51.528 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:51.528 -07 000000486 INF: FPGA: Recv YRDPOS 151568
17-03-17 19:18:51.538 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:51.538 -07 000000480 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:51.548 -07 000000480 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:18:51.548 -07 000000480 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:18:51.548 -07 000000480 INF: Y Motor: Moved to 74.0078 after 1416 ms (table move)
17-03-17 19:18:51.558 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173294 mm (DAC = 37856)
17-03-17 19:18:51.558 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:51.558 -07 000000429 INF: FPGA: Recv ZSGSRD 36266
17-03-17 19:18:51.568 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:51.568 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:51.568 -07 000000480 INF: FPGA: Recv ZSGSRD 36268
17-03-17 19:18:51.578 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:51.578 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:51.578 -07 000000623 INF: FPGA: Recv ZSGSRD 36267
17-03-17 19:18:51.588 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:51.588 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:51.588 -07 000000431 INF: FPGA: Recv ZSGSRD 36266
17-03-17 19:18:51.598 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:51.598 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:51.598 -07 000000486 INF: FPGA: Recv ZSGSRD 36273
17-03-17 19:18:51.608 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:51.608 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:51.608 -07 000000626 INF: FPGA: Recv ZSGSRD 36271
17-03-17 19:18:51.618 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:51.618 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:51.618 -07 000000480 INF: FPGA: Recv ZSGSRD 36265
17-03-17 19:18:51.628 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:51.628 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:51.628 -07 000000626 INF: FPGA: Recv ZSGSRD 36261
17-03-17 19:18:51.638 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:51.638 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:51.638 -07 000000623 INF: FPGA: Recv ZSGSRD 36262
17-03-17 19:18:51.648 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:51.648 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:51.648 -07 000000627 INF: FPGA: Recv ZSGSRD 36269
17-03-17 19:18:51.658 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:51.658 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:51.658 -07 000000431 INF: FPGA: Recv ZPIEZORD 32493
17-03-17 19:18:51.668 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:51.668 -07 000000512 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.776 V. Piezo Error = -8.4 V.
17-03-17 19:18:51.668 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36267 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36266 (-172.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36261 (-172.4 uncal um), Max = 36273 (-172.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:18:51.668 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36267, posNoise = 6, negNoise = 6
17-03-17 19:18:51.668 -07 000000512 INF: Z Motor: After move to -0.173294, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:51.668 -07 000000512 INF: Z Motor: Settle wait time = 1420 ms, measure time = 111 ms (allowed 150 ms), total time = 1531 ms
17-03-17 19:18:51.668 -07 000000512 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 19:18:51.678 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:18:51.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:18:51.708 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1574 ms
17-03-17 19:18:51.708 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:18:51.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:51.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:51.708 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:51.708 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:51.708 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:18:51.708 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:51.718 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:18:51.718 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:18:51.718 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:18:51.718 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:18:51.728 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:18:51.728 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:18:51.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:18:51.778 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:18:51.978 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:18:51.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:18:51.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:18:51.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 19:18:52.018 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:18:52.018 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 19:18:52.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 19:18:52.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:18:52.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:52.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:18:52.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:18:52.118 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:52.118 -07 000000431 INF: Autofocus start
17-03-17 19:18:52.118 -07 000000431 INF: MeasureProfile start
17-03-17 19:18:52.118 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:52.128 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:18:52.128 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:18:52.128 -07 000000431 INF: MeasureProfile done
17-03-17 19:18:52.128 -07 000000431 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:18:52.128 -07 000000431 INF: Autofocus finished
17-03-17 19:18:52.328 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:18:52.328 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:18:52.328 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.17331025375638. ----------
17-03-17 19:18:52.328 -07 000000610 INF: Cycle	24	Tile	18	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:18:52.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36371, sync = True, waitForSettling = True)
17-03-17 19:18:52.338 -07 000000610 INF: Z Motor: Moving to -0.166496 mm, started at -0.173310 mm, distance = 6.81 um
17-03-17 19:18:52.338 -07 000000610 INF: FPGA: Xmit ZDACW 36371\n [Z Motor]
17-03-17 19:18:52.338 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:18:52.348 -07 000000610 INF: FPGA: 'ZDACW 36371' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:18:52.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:52.348 -07 000000626 INF: FPGA: Recv ZDACR 36371
17-03-17 19:18:52.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:52.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:18:52.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:52.508 -07 000000627 INF: FPGA: Recv ZSGSRD 35204
17-03-17 19:18:52.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:52.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:52.518 -07 000000623 INF: FPGA: Recv ZSGSRD 35211
17-03-17 19:18:52.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:52.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:52.528 -07 000000480 INF: FPGA: Recv ZSGSRD 35208
17-03-17 19:18:52.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:52.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:52.538 -07 000000626 INF: FPGA: Recv ZSGSRD 35204
17-03-17 19:18:52.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:52.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:52.548 -07 000000429 INF: FPGA: Recv ZSGSRD 35210
17-03-17 19:18:52.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:52.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:52.558 -07 000000623 INF: FPGA: Recv ZSGSRD 35208
17-03-17 19:18:52.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:52.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:52.568 -07 000000627 INF: FPGA: Recv ZSGSRD 35213
17-03-17 19:18:52.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:52.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:52.578 -07 000000486 INF: FPGA: Recv ZSGSRD 35204
17-03-17 19:18:52.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:52.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:52.588 -07 000000429 INF: FPGA: Recv ZSGSRD 35206
17-03-17 19:18:52.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:52.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:52.598 -07 000000431 INF: FPGA: Recv ZSGSRD 35207
17-03-17 19:18:52.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:52.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:52.608 -07 000000627 INF: FPGA: Recv ZPIEZORD 31098
17-03-17 19:18:52.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:52.618 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.550 V. Piezo Error = -9.1 V.
17-03-17 19:18:52.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35208 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35208 (-165.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35204 (-165.6 uncal um), Max = 35213 (-165.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:18:52.618 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35208, posNoise = 5, negNoise = 4
17-03-17 19:18:52.618 -07 000000610 INF: Z Motor: After move to -0.166496, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:52.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:18:52.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:52.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:52.618 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:52.618 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:52.618 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:18:52.618 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:52.618 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:18:52.618 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:18:52.618 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:18:52.618 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:18:52.618 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:18:52.618 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:18:52.628 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:18:52.628 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:18:52.628 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:18:52.628 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:18:52.638 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 19:18:52.638 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:18:52.638 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 19:18:52.638 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:18:52.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 36548 150\n [Camera]
17-03-17 19:18:52.838 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:18:53.238 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:18:53.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:18:53.238 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:53.238 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:53.238 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1131221152, 0x0, 391868352) start.
17-03-17 19:18:53.238 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:18:53.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:18:53.248 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:53.248 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:53.248 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:18:53.428 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36548 785
17-03-17 19:18:53.578 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:18:53.618 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:18:53.618 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:18:53.618 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:53.628 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:53.628 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1131221152, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:18:53.628 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:18:53.628 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:53.628 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:18:53.628 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:18:53.628 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:18:53.778 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:18:53.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:18:53.778 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:53.888 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:18:53.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:18:53.888 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:53.888 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:53.888 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:18:53.898 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:53.898 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:18:53.968 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-17 19:18:53.968 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:18:53.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 36548 150' command took 2 ms to send, 1323 ms to get response, and 1327 ms overall
17-03-17 19:18:53.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:18:53.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.166507013098255. ------
17-03-17 19:18:53.968 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:53.968 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17290 mm
17-03-17 19:18:53.968 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:18:53.978 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:18:53.978 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:53.978 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:18:53.978 -07 000000480 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 19:18:53.978 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:18:53.978 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 37770, sync = True, waitForSettling = False)
17-03-17 19:18:53.978 -07 000000541 INF: Z Motor: Moving to -0.172900 mm, started at -0.166507 mm, distance = -6.39 um
17-03-17 19:18:53.988 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:53.988 -07 000000623 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:18:53.998 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:18:53.998 -07 000000541 INF: FPGA: Xmit ZDACW 37770\n [Z Motor]
17-03-17 19:18:53.998 -07 000000480 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:53.998 -07 000000480 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:18:53.998 -07 000000480 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:18:53.998 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:18:54.008 -07 000000541 INF: FPGA: 'ZDACW 37770' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:18:54.008 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:54.008 -07 000000478 INF: FPGA: Recv ZDACR 37770
17-03-17 19:18:54.018 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:54.018 -07 000000541 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:18:54.018 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:18:54.178 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:18:54.178 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:18:54.288 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:18:54.288 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:18:54.288 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:54.288 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:18:54.288 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:18:54.288 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:54.288 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:54.288 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:54.288 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 19:18:54.298 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 19:18:54.388 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:18:54.388 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:18:54.418 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:54.418 -07 000000478 INF: FPGA: Recv YRDPOS 153256
17-03-17 19:18:54.428 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:54.428 -07 000000480 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:54.428 -07 000000480 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 19:18:54.428 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.150 mm/sec
17-03-17 19:18:55.378 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:55.378 -07 000000627 INF: FPGA: Recv YRDPOS 153256
17-03-17 19:18:55.388 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:55.388 -07 000000480 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:55.398 -07 000000480 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:18:55.398 -07 000000480 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:18:55.398 -07 000000480 INF: Y Motor: Moved to 74.8320 after 1424 ms (table move)
17-03-17 19:18:55.398 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172900 mm (DAC = 37770)
17-03-17 19:18:55.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:55.408 -07 000000482 INF: FPGA: Recv ZSGSRD 36204
17-03-17 19:18:55.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:18:55.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:55.418 -07 000000429 INF: FPGA: Recv ZSGSRD 36195
17-03-17 19:18:55.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:18:55.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:55.428 -07 000000438 INF: FPGA: Recv ZSGSRD 36200
17-03-17 19:18:55.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:55.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:55.438 -07 000000626 INF: FPGA: Recv ZSGSRD 36206
17-03-17 19:18:55.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:55.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:55.448 -07 000000478 INF: FPGA: Recv ZSGSRD 36206
17-03-17 19:18:55.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:55.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:55.458 -07 000000626 INF: FPGA: Recv ZSGSRD 36210
17-03-17 19:18:55.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:55.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:55.468 -07 000000478 INF: FPGA: Recv ZSGSRD 36209
17-03-17 19:18:55.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:55.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:55.478 -07 000000626 INF: FPGA: Recv ZSGSRD 36211
17-03-17 19:18:55.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:55.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:55.488 -07 000000627 INF: FPGA: Recv ZSGSRD 36204
17-03-17 19:18:55.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:18:55.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:55.498 -07 000000626 INF: FPGA: Recv ZSGSRD 36200
17-03-17 19:18:55.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:55.508 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:55.508 -07 000000486 INF: FPGA: Recv ZPIEZORD 32431
17-03-17 19:18:55.518 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:55.518 -07 000000431 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.763 V. Piezo Error = -8.4 V.
17-03-17 19:18:55.518 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36204 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36205 (-172.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36195 (-172.0 uncal um), Max = 36211 (-172.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:18:55.518 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36204, posNoise = 7, negNoise = 9
17-03-17 19:18:55.518 -07 000000431 INF: Z Motor: After move to -0.172900, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:55.518 -07 000000431 INF: Z Motor: Settle wait time = 1426 ms, measure time = 112 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:18:55.518 -07 000000431 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 19:18:55.558 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-17 19:18:55.558 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:18:55.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:55.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:55.558 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:55.558 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:55.558 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:18:55.558 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:55.558 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:18:55.558 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:18:55.568 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:18:55.568 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:18:55.578 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 19:18:55.578 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 19:18:55.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:18:55.628 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:18:55.728 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.981281,
17-03-17 19:18:55.828 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:18:55.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:18:55.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:18:55.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 19:18:55.868 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:18:55.868 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 19:18:55.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:18:55.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:18:55.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:55.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:18:55.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:18:55.968 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:55.968 -07 000000627 INF: Autofocus start
17-03-17 19:18:55.968 -07 000000627 INF: MeasureProfile start
17-03-17 19:18:55.968 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:55.978 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:18:55.978 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:18:55.978 -07 000000627 INF: MeasureProfile done
17-03-17 19:18:55.978 -07 000000627 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:18:55.978 -07 000000627 INF: Autofocus finished
17-03-17 19:18:56.178 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:18:56.178 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:18:56.178 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.172905528391449. ----------
17-03-17 19:18:56.178 -07 000000610 INF: Cycle	24	Tile	19	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:18:56.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36267, sync = True, waitForSettling = True)
17-03-17 19:18:56.188 -07 000000610 INF: Z Motor: Moving to -0.166020 mm, started at -0.172906 mm, distance = 6.89 um
17-03-17 19:18:56.188 -07 000000610 INF: FPGA: Xmit ZDACW 36267\n [Z Motor]
17-03-17 19:18:56.188 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:18:56.198 -07 000000610 INF: FPGA: 'ZDACW 36267' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:56.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:56.198 -07 000000486 INF: FPGA: Recv ZDACR 36267
17-03-17 19:18:56.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:56.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:18:56.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:56.358 -07 000000626 INF: FPGA: Recv ZSGSRD 35135
17-03-17 19:18:56.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:56.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:56.388 -07 000000486 INF: FPGA: Recv ZSGSRD 35130
17-03-17 19:18:56.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:18:56.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:56.418 -07 000000429 INF: FPGA: Recv ZSGSRD 35129
17-03-17 19:18:56.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:18:56.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:56.438 -07 000000431 INF: FPGA: Recv ZSGSRD 35131
17-03-17 19:18:56.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:18:56.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:56.448 -07 000000438 INF: FPGA: Recv ZSGSRD 35136
17-03-17 19:18:56.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:56.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:56.458 -07 000000482 INF: FPGA: Recv ZSGSRD 35130
17-03-17 19:18:56.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:56.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:56.468 -07 000000486 INF: FPGA: Recv ZSGSRD 35134
17-03-17 19:18:56.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:56.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:56.478 -07 000000429 INF: FPGA: Recv ZSGSRD 35129
17-03-17 19:18:56.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:56.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:56.488 -07 000000438 INF: FPGA: Recv ZSGSRD 35137
17-03-17 19:18:56.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:56.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:18:56.498 -07 000000478 INF: FPGA: Recv ZSGSRD 35136
17-03-17 19:18:56.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:56.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:18:56.508 -07 000000431 INF: FPGA: Recv ZPIEZORD 31031
17-03-17 19:18:56.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:18:56.518 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.534 V. Piezo Error = -9.0 V.
17-03-17 19:18:56.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35133 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35132 (-165.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35129 (-165.1 uncal um), Max = 35137 (-165.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:18:56.518 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35133, posNoise = 4, negNoise = 4
17-03-17 19:18:56.518 -07 000000610 INF: Z Motor: After move to -0.166020, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:18:56.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 331 ms)
17-03-17 19:18:56.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:18:56.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:18:56.518 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:18:56.518 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:18:56.518 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:18:56.518 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:18:56.518 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:18:56.518 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:18:56.518 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:18:56.518 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:18:56.518 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:18:56.518 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:18:56.528 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:18:56.528 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:18:56.528 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:18:56.528 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:18:56.538 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:18:56.538 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:18:56.538 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:18:56.538 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:18:56.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 36444 150\n [Camera]
17-03-17 19:18:56.678 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:18:56.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:18:56.738 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:18:57.138 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:18:57.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:18:57.138 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:57.138 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:57.138 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:18:57.138 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:18:57.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:18:57.138 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:57.138 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:57.138 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1060376624, 0x0, 418435064) start.
17-03-17 19:18:57.328 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36444 785
17-03-17 19:18:57.478 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:18:57.508 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1060376624, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 19:18:57.508 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 19:18:57.508 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:57.518 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:57.518 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:18:57.518 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:18:57.518 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:57.518 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:57.518 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:18:57.518 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:18:57.668 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:18:57.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:18:57.668 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:18:57.668 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:18:57.668 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1095798888, 0x0, 391868352) start.
17-03-17 19:18:57.678 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:18:57.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:18:57.678 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:18:57.678 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:18:57.678 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1131221152, 0x0, 418435064) start.
17-03-17 19:18:57.858 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:18:57.868 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:18:57.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 36444 150' command took 2 ms to send, 1320 ms to get response, and 1327 ms overall
17-03-17 19:18:58.068 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1095798888, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:18:58.068 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:18:58.068 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:58.068 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1131221152, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 19:18:58.068 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:18:58.068 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:18:58.078 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:18:58.078 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:18:58.078 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:18:58.078 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:18:58.078 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:18:58.118 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 19:18:58.118 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:18:58.158 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-17 19:18:58.168 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 19:18:58.168 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:18:58.168 -07 000000429 INF: FPGA: Recv EMCUR 
17-03-17 19:18:58.178 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:18:58.178 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 19:18:58.678 -07 000000438 INF: FPGA: Recv EMIN
17-03-17 19:18:58.678 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 19:18:58.678 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 19:18:58.678 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-17 19:18:58.688 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:18:58.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:18:58.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.166025197187623. ------
17-03-17 19:18:58.798 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:18:58.798 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14050 mm
17-03-17 19:18:58.798 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:18:58.798 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30693, sync = True, waitForSettling = False)
17-03-17 19:18:58.798 -07 000000382 INF: Z Motor: Moving to -0.140504 mm, started at -0.166025 mm, distance = 25.52 um
17-03-17 19:18:58.798 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:18:58.798 -07 000000438 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-17 19:18:58.798 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:18:58.808 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:18:58.808 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:18:58.808 -07 000000626 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:18:58.818 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:18:58.818 -07 000000438 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:18:58.818 -07 000000382 INF: FPGA: Xmit ZDACW 30693\n [Z Motor]
17-03-17 19:18:58.818 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:18:58.818 -07 000000438 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 19:18:58.818 -07 000000438 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:18:58.828 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:18:58.828 -07 000000382 INF: FPGA: 'ZDACW 30693' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:18:58.838 -07 000000438 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:18:58.848 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:18:58.848 -07 000000429 INF: FPGA: Recv ZDACR 30693
17-03-17 19:18:58.858 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:18:58.858 -07 000000382 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 19:18:59.028 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:18:59.028 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:19:00.458 -07 000000431 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 19:19:00.458 -07 000000438 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1644 ms overall
17-03-17 19:19:00.458 -07 000000438 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:19:00.458 -07 000000438 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23873 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 19:19:00.458 -07 000000438 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1645 ms, distance = 14.919 mm, average velocity = 9.070 mm/sec
17-03-17 19:19:01.088 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.996267,
17-03-17 19:19:01.678 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:19:01.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:19:03.308 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:03.308 -07 000000478 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:19:03.318 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:03.318 -07 000000438 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:03.338 -07 000000438 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:19:03.338 -07 000000438 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 19:19:03.338 -07 000000438 INF: Y Motor: Moved to 59.9116 after 4542 ms
17-03-17 19:19:03.348 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140504 mm (DAC = 30693)
17-03-17 19:19:03.348 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:03.348 -07 000000431 INF: FPGA: Recv ZSGSRD 31165
17-03-17 19:19:03.358 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:19:03.358 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:03.358 -07 000000486 INF: FPGA: Recv ZSGSRD 31159
17-03-17 19:19:03.368 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:03.368 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:03.368 -07 000000431 INF: FPGA: Recv ZSGSRD 31157
17-03-17 19:19:03.378 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:03.378 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:03.378 -07 000000382 INF: FPGA: Recv ZSGSRD 31157
17-03-17 19:19:03.388 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:03.388 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:03.388 -07 000000627 INF: FPGA: Recv ZSGSRD 31162
17-03-17 19:19:03.398 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:03.398 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:03.398 -07 000000482 INF: FPGA: Recv ZSGSRD 31166
17-03-17 19:19:03.408 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:03.408 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:03.408 -07 000000627 INF: FPGA: Recv ZSGSRD 31156
17-03-17 19:19:03.418 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:03.418 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:03.418 -07 000000431 INF: FPGA: Recv ZSGSRD 31163
17-03-17 19:19:03.428 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:03.428 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:03.428 -07 000000382 INF: FPGA: Recv ZSGSRD 31164
17-03-17 19:19:03.438 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:03.438 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:03.438 -07 000000478 INF: FPGA: Recv ZSGSRD 31167
17-03-17 19:19:03.448 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:03.448 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:03.448 -07 000000626 INF: FPGA: Recv ZPIEZORD 26801
17-03-17 19:19:03.458 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:03.458 -07 000000424 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.683 V. Piezo Error = -9.6 V.
17-03-17 19:19:03.458 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.5 um, Read 10 ADC samples: Avg = 31162 (-139.7 uncal um), Error = 0.8 uncal um, Median = 31162 (-139.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31156 (-139.7 uncal um), Max = 31167 (-139.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:19:03.458 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31162, posNoise = 5, negNoise = 6
17-03-17 19:19:03.458 -07 000000424 INF: Z Motor: After move to -0.140504, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:03.458 -07 000000424 INF: Z Motor: Settle wait time = 4545 ms, measure time = 109 ms (allowed 150 ms), total time = 4654 ms
17-03-17 19:19:03.458 -07 000000424 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 19:19:03.508 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4706 ms
17-03-17 19:19:03.508 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:19:03.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:03.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:03.508 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:03.508 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:03.508 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:19:03.508 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:03.508 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:19:03.508 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:19:03.538 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 19:19:03.538 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:19:03.538 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:19:03.538 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:19:03.548 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:19:03.558 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-17 19:19:03.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:19:03.598 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:19:03.798 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:19:03.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:19:03.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:19:03.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:19:03.838 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:19:03.838 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 19:19:03.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 19:19:03.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 19:19:03.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:03.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:19:03.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 19:19:03.938 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:03.938 -07 000000429 INF: Image SNR check: start
17-03-17 19:19:03.938 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:03.948 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:19:03.948 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:19:03.958 -07 000000429 INF: Image SNR check: pass  [peak (Max-Min)=61.64]
17-03-17 19:19:03.958 -07 000000429 INF: Autofocus start
17-03-17 19:19:03.958 -07 000000429 INF: MeasureProfile start
17-03-17 19:19:03.968 -07 000000429 INF: MeasureProfile done
17-03-17 19:19:03.968 -07 000000429 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:19:03.968 -07 000000429 INF: Autofocus finished
17-03-17 19:19:04.148 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:19:04.148 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:19:04.158 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.14051465077269. ----------
17-03-17 19:19:04.158 -07 000000610 INF: Cycle	24	Tile	1	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:19:04.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29201, sync = True, waitForSettling = True)
17-03-17 19:19:04.158 -07 000000610 INF: Z Motor: Moving to -0.133674 mm, started at -0.140515 mm, distance = 6.84 um
17-03-17 19:19:04.158 -07 000000610 INF: FPGA: Xmit ZDACW 29201\n [Z Motor]
17-03-17 19:19:04.158 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:19:04.168 -07 000000610 INF: FPGA: 'ZDACW 29201' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:19:04.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:04.168 -07 000000429 INF: FPGA: Recv ZDACR 29201
17-03-17 19:19:04.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:04.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:19:04.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:04.328 -07 000000478 INF: FPGA: Recv ZSGSRD 30099
17-03-17 19:19:04.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:04.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:04.338 -07 000000429 INF: FPGA: Recv ZSGSRD 30098
17-03-17 19:19:04.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:04.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:04.348 -07 000000478 INF: FPGA: Recv ZSGSRD 30100
17-03-17 19:19:04.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:04.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:04.358 -07 000000429 INF: FPGA: Recv ZSGSRD 30098
17-03-17 19:19:04.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:04.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:04.368 -07 000000382 INF: FPGA: Recv ZSGSRD 30099
17-03-17 19:19:04.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:04.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:04.378 -07 000000429 INF: FPGA: Recv ZSGSRD 30094
17-03-17 19:19:04.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:04.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:04.388 -07 000000382 INF: FPGA: Recv ZSGSRD 30097
17-03-17 19:19:04.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:04.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:04.398 -07 000000429 INF: FPGA: Recv ZSGSRD 30093
17-03-17 19:19:04.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:04.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:04.408 -07 000000382 INF: FPGA: Recv ZSGSRD 30097
17-03-17 19:19:04.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:04.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:04.418 -07 000000424 INF: FPGA: Recv ZSGSRD 30099
17-03-17 19:19:04.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:04.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:04.428 -07 000000382 INF: FPGA: Recv ZPIEZORD 25632
17-03-17 19:19:04.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:04.438 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.456 V. Piezo Error = -9.8 V.
17-03-17 19:19:04.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30097 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30098 (-132.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30093 (-132.9 uncal um), Max = 30100 (-132.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:19:04.438 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30097, posNoise = 3, negNoise = 4
17-03-17 19:19:04.438 -07 000000610 INF: Z Motor: After move to -0.133674, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:04.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:19:04.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:04.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:04.438 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:04.438 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:04.438 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:19:04.438 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:04.438 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:19:04.438 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:19:04.438 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:19:04.438 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:19:04.448 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:19:04.448 -07 000000627 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:19:04.448 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:19:04.448 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:19:04.458 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:19:04.458 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:19:04.468 -07 000000627 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 19:19:04.468 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:19:04.468 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:19:04.468 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:19:04.478 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:19:04.478 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms.
17-03-17 19:19:04.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 29377 150\n [Camera]
17-03-17 19:19:04.678 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:19:05.078 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:19:05.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:19:05.078 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:05.088 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:05.088 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:19:05.088 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:19:05.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:19:05.088 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:05.088 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:05.098 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:19:05.268 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29377 785
17-03-17 19:19:05.418 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:19:05.458 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:19:05.458 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:19:05.458 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:05.468 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:05.468 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:19:05.468 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:19:05.468 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:19:05.468 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:05.478 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:05.478 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:19:05.618 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:19:05.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:19:05.618 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:05.618 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:19:05.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:19:05.618 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:05.618 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:05.618 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1063391280, 0x0, 418435064) start.
17-03-17 19:19:05.758 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:05.758 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:19:05.808 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:19:05.808 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:19:05.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 29377 150' command took 2 ms to send, 1322 ms to get response, and 1328 ms overall
17-03-17 19:19:05.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:19:05.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.133672864841715. ------
17-03-17 19:19:05.808 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:05.808 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14013 mm
17-03-17 19:19:05.808 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:19:05.818 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:19:05.818 -07 000000593 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 19:19:05.818 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:05.818 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:05.818 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:19:05.818 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30612, sync = True, waitForSettling = False)
17-03-17 19:19:05.818 -07 000000478 INF: Z Motor: Moving to -0.140133 mm, started at -0.133673 mm, distance = -6.46 um
17-03-17 19:19:05.818 -07 000000424 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:19:05.828 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:19:05.828 -07 000000593 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:05.828 -07 000000593 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:19:05.828 -07 000000593 INF: Y Motor: Moving 1330 steps2
17-03-17 19:19:05.828 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:19:05.838 -07 000000478 INF: FPGA: Xmit ZDACW 30612\n [Z Motor]
17-03-17 19:19:05.838 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:19:05.848 -07 000000478 INF: FPGA: 'ZDACW 30612' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:19:05.848 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:19:05.858 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:05.858 -07 000000424 INF: FPGA: Recv ZDACR 30612
17-03-17 19:19:05.868 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:19:05.868 -07 000000478 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 19:19:06.008 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1063391280, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:19:06.008 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:19:06.008 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:06.008 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:06.018 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:19:06.028 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:19:06.028 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 19:19:06.148 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:19:06.148 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:19:06.148 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:06.158 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:06.158 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 538 ms.
17-03-17 19:19:06.218 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:19:06.218 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:19:06.248 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:06.248 -07 000000476 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:19:06.258 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:19:06.258 -07 000000593 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:06.258 -07 000000593 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:19:06.258 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.831 mm, average velocity = 2.088 mm/sec
17-03-17 19:19:06.448 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.024884,
17-03-17 19:19:06.678 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:19:06.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:19:07.208 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:07.208 -07 000000478 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:19:07.218 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:07.218 -07 000000593 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:07.238 -07 000000593 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:19:07.238 -07 000000593 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:19:07.238 -07 000000593 INF: Y Motor: Moved to 60.7339 after 1418 ms (table move)
17-03-17 19:19:07.238 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140133 mm (DAC = 30612)
17-03-17 19:19:07.238 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:07.238 -07 000000541 INF: FPGA: Recv ZSGSRD 31106
17-03-17 19:19:07.248 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:19:07.248 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:07.248 -07 000000623 INF: FPGA: Recv ZSGSRD 31098
17-03-17 19:19:07.258 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:07.258 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:07.258 -07 000000541 INF: FPGA: Recv ZSGSRD 31102
17-03-17 19:19:07.268 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:07.268 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:07.268 -07 000000593 INF: FPGA: Recv ZSGSRD 31102
17-03-17 19:19:07.278 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:07.278 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:07.278 -07 000000541 INF: FPGA: Recv ZSGSRD 31104
17-03-17 19:19:07.288 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:07.288 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:07.288 -07 000000382 INF: FPGA: Recv ZSGSRD 31106
17-03-17 19:19:07.298 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:19:07.298 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:07.298 -07 000000478 INF: FPGA: Recv ZSGSRD 31099
17-03-17 19:19:07.308 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:07.308 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:07.308 -07 000000627 INF: FPGA: Recv ZSGSRD 31105
17-03-17 19:19:07.318 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:07.318 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:07.318 -07 000000626 INF: FPGA: Recv ZSGSRD 31099
17-03-17 19:19:07.328 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:07.328 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:07.328 -07 000000424 INF: FPGA: Recv ZSGSRD 31101
17-03-17 19:19:07.338 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:07.338 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:07.338 -07 000000478 INF: FPGA: Recv ZPIEZORD 26979
17-03-17 19:19:07.348 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:07.348 -07 000000429 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.671 V. Piezo Error = -9.1 V.
17-03-17 19:19:07.348 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.1 um, Read 10 ADC samples: Avg = 31102 (-139.3 uncal um), Error = 0.8 uncal um, Median = 31102 (-139.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 31098 (-139.3 uncal um), Max = 31106 (-139.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:19:07.348 -07 000000429 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31102, posNoise = 4, negNoise = 4
17-03-17 19:19:07.348 -07 000000429 INF: Z Motor: After move to -0.140133, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:07.348 -07 000000429 INF: Z Motor: Settle wait time = 1421 ms, measure time = 106 ms (allowed 150 ms), total time = 1527 ms
17-03-17 19:19:07.348 -07 000000429 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:19:07.398 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 19:19:07.398 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:19:07.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:07.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:07.398 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:07.398 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:07.398 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:19:07.398 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:07.398 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:19:07.398 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:19:07.408 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:19:07.408 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:19:07.418 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:19:07.418 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:19:07.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:19:07.468 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:19:07.668 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:19:07.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:19:07.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:19:07.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 19:19:07.708 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:19:07.708 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:19:07.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 19:19:07.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:19:07.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:07.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:19:07.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:19:07.808 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:07.808 -07 000000593 INF: Autofocus start
17-03-17 19:19:07.808 -07 000000593 INF: MeasureProfile start
17-03-17 19:19:07.808 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:07.818 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:19:07.818 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:19:07.818 -07 000000593 INF: MeasureProfile done
17-03-17 19:19:07.818 -07 000000593 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:19:07.818 -07 000000593 INF: Autofocus finished
17-03-17 19:19:08.018 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:19:08.018 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:19:08.018 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.140129198044184. ----------
17-03-17 19:19:08.018 -07 000000610 INF: Cycle	24	Tile	2	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:19:08.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29136, sync = True, waitForSettling = True)
17-03-17 19:19:08.028 -07 000000610 INF: Z Motor: Moving to -0.133376 mm, started at -0.140129 mm, distance = 6.75 um
17-03-17 19:19:08.028 -07 000000610 INF: FPGA: Xmit ZDACW 29136\n [Z Motor]
17-03-17 19:19:08.028 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:19:08.038 -07 000000610 INF: FPGA: 'ZDACW 29136' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:08.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:08.038 -07 000000627 INF: FPGA: Recv ZDACR 29136
17-03-17 19:19:08.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:08.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:19:08.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:08.198 -07 000000429 INF: FPGA: Recv ZSGSRD 30057
17-03-17 19:19:08.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:08.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:08.208 -07 000000623 INF: FPGA: Recv ZSGSRD 30053
17-03-17 19:19:08.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:08.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:08.218 -07 000000541 INF: FPGA: Recv ZSGSRD 30049
17-03-17 19:19:08.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:08.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:08.228 -07 000000626 INF: FPGA: Recv ZSGSRD 30049
17-03-17 19:19:08.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:08.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:08.238 -07 000000429 INF: FPGA: Recv ZSGSRD 30054
17-03-17 19:19:08.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:08.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:08.248 -07 000000623 INF: FPGA: Recv ZSGSRD 30062
17-03-17 19:19:08.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:08.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:08.258 -07 000000433 INF: FPGA: Recv ZSGSRD 30046
17-03-17 19:19:08.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:08.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:08.268 -07 000000478 INF: FPGA: Recv ZSGSRD 30051
17-03-17 19:19:08.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:08.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:08.278 -07 000000382 INF: FPGA: Recv ZSGSRD 30047
17-03-17 19:19:08.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:08.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:08.288 -07 000000476 INF: FPGA: Recv ZSGSRD 30051
17-03-17 19:19:08.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:08.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:08.298 -07 000000541 INF: FPGA: Recv ZPIEZORD 25613
17-03-17 19:19:08.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:08.308 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.446 V. Piezo Error = -9.7 V.
17-03-17 19:19:08.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30052 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30051 (-132.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30046 (-132.6 uncal um), Max = 30062 (-132.7 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:19:08.308 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30052, posNoise = 10, negNoise = 6
17-03-17 19:19:08.308 -07 000000610 INF: Z Motor: After move to -0.133376, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:08.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:19:08.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:08.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:08.308 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:08.308 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:08.308 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:19:08.308 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:19:08.308 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:08.308 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:19:08.308 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 19:19:08.308 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:19:08.308 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 4 ms.
17-03-17 19:19:08.308 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:19:08.318 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:19:08.318 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:19:08.318 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:19:08.318 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:19:08.328 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:19:08.328 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 19:19:08.328 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:19:08.328 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 19:19:08.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 29312 150\n [Camera]
17-03-17 19:19:08.538 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:19:08.938 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:19:08.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:19:08.938 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:08.938 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:19:08.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:19:08.938 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:08.938 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:08.938 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:19:08.938 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:08.938 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:19:09.128 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29312 785
17-03-17 19:19:09.278 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:19:09.338 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:19:09.338 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:19:09.338 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:09.338 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 19:19:09.338 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:19:09.338 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:09.338 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:19:09.338 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:19:09.338 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:19:09.348 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:19:09.468 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:19:09.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:19:09.468 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:09.468 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:09.468 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1098813544, 0x0, 391868352) start.
17-03-17 19:19:09.468 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:19:09.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:19:09.478 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:09.478 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:09.478 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1134235808, 0x0, 418435064) start.
17-03-17 19:19:09.658 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:19:09.658 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:19:09.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 29312 150' command took 2 ms to send, 1318 ms to get response, and 1326 ms overall
17-03-17 19:19:09.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:19:09.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.133383775295335. ------
17-03-17 19:19:09.668 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:09.668 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.14008 mm
17-03-17 19:19:09.668 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:19:09.668 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:19:09.668 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30601, sync = True, waitForSettling = False)
17-03-17 19:19:09.668 -07 000000593 INF: Z Motor: Moving to -0.140082 mm, started at -0.133384 mm, distance = -6.70 um
17-03-17 19:19:09.668 -07 000000433 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 19:19:09.668 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:09.678 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:19:09.678 -07 000000593 INF: FPGA: Xmit ZDACW 30601\n [Z Motor]
17-03-17 19:19:09.678 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:19:09.688 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:09.688 -07 000000593 INF: FPGA: 'ZDACW 30601' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:19:09.688 -07 000000429 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:19:09.698 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:19:09.698 -07 000000433 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:09.698 -07 000000433 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:19:09.698 -07 000000433 INF: Y Motor: Moving 1342 steps-18
17-03-17 19:19:09.698 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:19:09.708 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:09.708 -07 000000429 INF: FPGA: Recv ZDACR 30601
17-03-17 19:19:09.718 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:19:09.718 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:19:09.718 -07 000000593 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 19:19:09.868 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1134235808, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:19:09.868 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:19:09.868 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:09.868 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1098813544, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:19:09.868 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:19:09.868 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:09.878 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:09.878 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:19:09.878 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:19:09.878 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 19:19:09.898 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:19:09.898 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 19:19:10.088 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:19:10.088 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 19:19:10.128 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:10.128 -07 000000551 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:19:10.138 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:19:10.138 -07 000000433 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:10.138 -07 000000433 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:19:10.138 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.123 mm/sec
17-03-17 19:19:11.088 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:11.088 -07 000000593 INF: FPGA: Recv YRDPOS 126085
17-03-17 19:19:11.098 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:11.098 -07 000000433 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:11.118 -07 000000433 INF: Y Motor: After move to 61.572609, error = -0.007668, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:19:11.118 -07 000000433 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:19:11.118 -07 000000433 INF: Y Motor: Moved to 61.5649 after 1443 ms (table move)
17-03-17 19:19:11.118 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140082 mm (DAC = 30601)
17-03-17 19:19:11.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:11.118 -07 000000551 INF: FPGA: Recv ZSGSRD 31099
17-03-17 19:19:11.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:19:11.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:11.128 -07 000000429 INF: FPGA: Recv ZSGSRD 31093
17-03-17 19:19:11.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:11.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:11.138 -07 000000551 INF: FPGA: Recv ZSGSRD 31097
17-03-17 19:19:11.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:11.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:11.148 -07 000000433 INF: FPGA: Recv ZSGSRD 31098
17-03-17 19:19:11.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:11.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:11.158 -07 000000551 INF: FPGA: Recv ZSGSRD 31105
17-03-17 19:19:11.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:11.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:11.168 -07 000000429 INF: FPGA: Recv ZSGSRD 31104
17-03-17 19:19:11.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:11.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:11.178 -07 000000476 INF: FPGA: Recv ZSGSRD 31089
17-03-17 19:19:11.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:11.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:11.188 -07 000000433 INF: FPGA: Recv ZSGSRD 31097
17-03-17 19:19:11.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:11.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:11.198 -07 000000476 INF: FPGA: Recv ZSGSRD 31095
17-03-17 19:19:11.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:11.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:11.208 -07 000000433 INF: FPGA: Recv ZSGSRD 31090
17-03-17 19:19:11.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:11.218 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:11.218 -07 000000476 INF: FPGA: Recv ZPIEZORD 27022
17-03-17 19:19:11.228 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:11.228 -07 000000431 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.669 V. Piezo Error = -9.0 V.
17-03-17 19:19:11.228 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.1 um, Read 10 ADC samples: Avg = 31097 (-139.3 uncal um), Error = 0.8 uncal um, Median = 31097 (-139.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31089 (-139.2 uncal um), Max = 31105 (-139.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:19:11.228 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31097, posNoise = 8, negNoise = 8
17-03-17 19:19:11.228 -07 000000431 INF: Z Motor: After move to -0.140082, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:11.228 -07 000000431 INF: Z Motor: Settle wait time = 1446 ms, measure time = 107 ms (allowed 150 ms), total time = 1553 ms
17-03-17 19:19:11.228 -07 000000431 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:19:11.278 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 19:19:11.278 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:19:11.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:11.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:11.278 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:11.278 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:11.278 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:19:11.278 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:11.278 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:19:11.278 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:19:11.288 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:19:11.288 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:19:11.298 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 19:19:11.298 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:19:11.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:19:11.338 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:19:11.538 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:19:11.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:19:11.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:19:11.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 19:19:11.578 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:19:11.578 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 19:19:11.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 19:19:11.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 19:19:11.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:11.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:19:11.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 19:19:11.678 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:19:11.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:19:11.678 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:11.678 -07 000000433 INF: Autofocus start
17-03-17 19:19:11.678 -07 000000433 INF: MeasureProfile start
17-03-17 19:19:11.688 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:11.688 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 19:19:11.688 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:19:11.688 -07 000000433 INF: MeasureProfile done
17-03-17 19:19:11.688 -07 000000433 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:19:11.688 -07 000000433 INF: Autofocus finished
17-03-17 19:19:11.808 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.02213,
17-03-17 19:19:11.888 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:19:11.888 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 19:19:11.898 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56494140625, Z-position -0.140097076983475. ----------
17-03-17 19:19:11.898 -07 000000610 INF: Cycle	24	Tile	3	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:19:11.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29109, sync = True, waitForSettling = True)
17-03-17 19:19:11.898 -07 000000610 INF: Z Motor: Moving to -0.133252 mm, started at -0.140097 mm, distance = 6.84 um
17-03-17 19:19:11.898 -07 000000610 INF: FPGA: Xmit ZDACW 29109\n [Z Motor]
17-03-17 19:19:11.898 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:19:11.908 -07 000000610 INF: FPGA: 'ZDACW 29109' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:19:11.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:11.908 -07 000000541 INF: FPGA: Recv ZDACR 29109
17-03-17 19:19:11.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:11.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:19:12.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:12.068 -07 000000486 INF: FPGA: Recv ZSGSRD 30035
17-03-17 19:19:12.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:12.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:12.078 -07 000000429 INF: FPGA: Recv ZSGSRD 30027
17-03-17 19:19:12.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:12.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:12.088 -07 000000486 INF: FPGA: Recv ZSGSRD 30033
17-03-17 19:19:12.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:12.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:12.098 -07 000000541 INF: FPGA: Recv ZSGSRD 30031
17-03-17 19:19:12.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:12.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:12.108 -07 000000593 INF: FPGA: Recv ZSGSRD 30034
17-03-17 19:19:12.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:12.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:12.118 -07 000000541 INF: FPGA: Recv ZSGSRD 30036
17-03-17 19:19:12.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:12.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:12.128 -07 000000486 INF: FPGA: Recv ZSGSRD 30031
17-03-17 19:19:12.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:12.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:12.138 -07 000000541 INF: FPGA: Recv ZSGSRD 30029
17-03-17 19:19:12.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:12.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:12.148 -07 000000486 INF: FPGA: Recv ZSGSRD 30033
17-03-17 19:19:12.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:12.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:12.168 -07 000000431 INF: FPGA: Recv ZSGSRD 30034
17-03-17 19:19:12.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:19:12.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:12.178 -07 000000551 INF: FPGA: Recv ZPIEZORD 25630
17-03-17 19:19:12.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:12.188 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.442 V. Piezo Error = -9.7 V.
17-03-17 19:19:12.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30032 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30033 (-132.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30027 (-132.4 uncal um), Max = 30036 (-132.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:19:12.188 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30032, posNoise = 4, negNoise = 5
17-03-17 19:19:12.188 -07 000000610 INF: Z Motor: After move to -0.133252, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:12.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-17 19:19:12.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:12.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:12.188 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:12.188 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:12.188 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:19:12.188 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:12.188 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:19:12.188 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:19:12.188 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:19:12.188 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:19:12.188 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:19:12.188 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:19:12.198 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:19:12.198 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:19:12.198 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:19:12.198 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:19:12.208 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:19:12.208 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:19:12.208 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:19:12.208 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:19:12.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 29285 150\n [Camera]
17-03-17 19:19:12.408 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:19:12.808 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:19:12.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:19:12.808 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:12.808 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:12.808 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:19:12.808 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:19:12.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:19:12.808 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:12.808 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:12.808 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:19:12.998 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29285 785
17-03-17 19:19:13.148 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:19:13.188 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:19:13.188 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:19:13.188 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:13.188 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:19:13.188 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:19:13.188 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:13.188 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:19:13.188 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:19:13.188 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:19:13.198 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:19:13.338 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:19:13.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:19:13.338 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:13.338 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:13.338 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:19:13.348 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:19:13.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:19:13.348 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:13.348 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:13.348 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:19:13.528 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:19:13.538 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:19:13.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 29285 150' command took 2 ms to send, 1320 ms to get response, and 1327 ms overall
17-03-17 19:19:13.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:19:13.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56494140625, Z-Position -0.1332552910525. ------
17-03-17 19:19:13.538 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:13.538 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13964 mm
17-03-17 19:19:13.538 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:19:13.538 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:13.538 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30505, sync = True, waitForSettling = False)
17-03-17 19:19:13.538 -07 000000486 INF: Z Motor: Moving to -0.139643 mm, started at -0.133255 mm, distance = -6.39 um
17-03-17 19:19:13.538 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:19:13.538 -07 000000593 INF: Y Motor: Moving to 62.4026 mm, started at 61.5649 mm, delta = 0.8377 mm
17-03-17 19:19:13.548 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:19:13.548 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:13.548 -07 000000626 INF: FPGA: Recv YRDPOS 126085
17-03-17 19:19:13.558 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:13.558 -07 000000486 INF: FPGA: Xmit ZDACW 30505\n [Z Motor]
17-03-17 19:19:13.558 -07 000000593 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:13.558 -07 000000593 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:19:13.558 -07 000000593 INF: Y Motor: Moving 1340 steps-17
17-03-17 19:19:13.558 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:19:13.568 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:19:13.568 -07 000000486 INF: FPGA: 'ZDACW 30505' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 19:19:13.578 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:19:13.588 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:13.588 -07 000000433 INF: FPGA: Recv ZDACR 30505
17-03-17 19:19:13.598 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:19:13.598 -07 000000486 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 19:19:13.738 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:19:13.738 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:19:13.738 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:13.738 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:19:13.738 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:19:13.738 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:13.748 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:13.748 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:19:13.748 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:19:13.748 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:19:13.768 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:19:13.768 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:19:13.958 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 19:19:13.958 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 19:19:13.988 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:13.988 -07 000000482 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:19:13.998 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:19:13.998 -07 000000593 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:13.998 -07 000000593 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:19:13.998 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.838 mm, average velocity = 2.089 mm/sec
17-03-17 19:19:14.948 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:14.948 -07 000000480 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:19:14.958 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:14.958 -07 000000593 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:14.968 -07 000000593 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:19:14.968 -07 000000593 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:19:14.968 -07 000000593 INF: Y Motor: Moved to 62.3960 after 1429 ms (table move)
17-03-17 19:19:14.978 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139643 mm (DAC = 30505)
17-03-17 19:19:14.978 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:14.978 -07 000000433 INF: FPGA: Recv ZSGSRD 31025
17-03-17 19:19:14.988 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:19:14.988 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:14.988 -07 000000593 INF: FPGA: Recv ZSGSRD 31030
17-03-17 19:19:14.998 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:14.998 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:14.998 -07 000000480 INF: FPGA: Recv ZSGSRD 31018
17-03-17 19:19:15.008 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:15.008 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:15.008 -07 000000482 INF: FPGA: Recv ZSGSRD 31024
17-03-17 19:19:15.018 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:15.018 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:15.018 -07 000000433 INF: FPGA: Recv ZSGSRD 31031
17-03-17 19:19:15.028 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:15.028 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:15.028 -07 000000593 INF: FPGA: Recv ZSGSRD 31034
17-03-17 19:19:15.038 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:15.038 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:15.038 -07 000000480 INF: FPGA: Recv ZSGSRD 31030
17-03-17 19:19:15.048 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:15.048 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:15.048 -07 000000482 INF: FPGA: Recv ZSGSRD 31025
17-03-17 19:19:15.058 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:15.058 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:15.058 -07 000000433 INF: FPGA: Recv ZSGSRD 31029
17-03-17 19:19:15.068 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:15.068 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:15.068 -07 000000593 INF: FPGA: Recv ZSGSRD 31021
17-03-17 19:19:15.078 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:15.078 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:15.078 -07 000000480 INF: FPGA: Recv ZPIEZORD 26986
17-03-17 19:19:15.088 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:15.088 -07 000000551 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.655 V. Piezo Error = -8.9 V.
17-03-17 19:19:15.088 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31027 (-138.8 uncal um), Error = 0.8 uncal um, Median = 31027 (-138.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31018 (-138.8 uncal um), Max = 31034 (-138.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:19:15.088 -07 000000551 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31027, posNoise = 7, negNoise = 9
17-03-17 19:19:15.088 -07 000000551 INF: Z Motor: After move to -0.139643, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:15.088 -07 000000551 INF: Z Motor: Settle wait time = 1434 ms, measure time = 107 ms (allowed 150 ms), total time = 1541 ms
17-03-17 19:19:15.088 -07 000000551 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:19:15.138 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 19:19:15.138 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:19:15.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:15.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:15.138 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:15.138 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:19:15.138 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:15.138 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:15.148 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:19:15.148 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:19:15.148 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:19:15.148 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:19:15.148 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:19:15.148 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:19:15.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:19:15.198 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:19:15.398 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:19:15.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:19:15.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:19:15.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-17 19:19:15.438 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:19:15.438 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 19:19:15.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:19:15.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:19:15.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:15.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:19:15.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:19:15.538 -07 000000480 INF: Autofocus start
17-03-17 19:19:15.538 -07 000000480 INF: MeasureProfile start
17-03-17 19:19:15.538 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:15.538 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:15.548 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:19:15.548 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:19:15.548 -07 000000480 INF: MeasureProfile done
17-03-17 19:19:15.548 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:19:15.548 -07 000000480 INF: Autofocus finished
17-03-17 19:19:15.748 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:19:15.748 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:19:15.748 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.139647382133552. ----------
17-03-17 19:19:15.748 -07 000000610 INF: Cycle	24	Tile	4	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:19:15.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29029, sync = True, waitForSettling = True)
17-03-17 19:19:15.758 -07 000000610 INF: Z Motor: Moving to -0.132886 mm, started at -0.139647 mm, distance = 6.76 um
17-03-17 19:19:15.758 -07 000000610 INF: FPGA: Xmit ZDACW 29029\n [Z Motor]
17-03-17 19:19:15.758 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 19:19:15.768 -07 000000610 INF: FPGA: 'ZDACW 29029' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:19:15.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:15.768 -07 000000593 INF: FPGA: Recv ZDACR 29029
17-03-17 19:19:15.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:15.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:19:15.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:15.928 -07 000000593 INF: FPGA: Recv ZSGSRD 29974
17-03-17 19:19:15.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:15.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:15.938 -07 000000486 INF: FPGA: Recv ZSGSRD 29980
17-03-17 19:19:15.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:15.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:15.948 -07 000000551 INF: FPGA: Recv ZSGSRD 29972
17-03-17 19:19:15.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:15.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:15.958 -07 000000480 INF: FPGA: Recv ZSGSRD 29979
17-03-17 19:19:15.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:15.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:15.968 -07 000000551 INF: FPGA: Recv ZSGSRD 29978
17-03-17 19:19:15.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:15.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:15.978 -07 000000433 INF: FPGA: Recv ZSGSRD 29970
17-03-17 19:19:15.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:15.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:15.988 -07 000000541 INF: FPGA: Recv ZSGSRD 29975
17-03-17 19:19:15.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:15.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:15.998 -07 000000482 INF: FPGA: Recv ZSGSRD 29971
17-03-17 19:19:16.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:16.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:16.008 -07 000000433 INF: FPGA: Recv ZSGSRD 29980
17-03-17 19:19:16.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:16.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:16.018 -07 000000486 INF: FPGA: Recv ZSGSRD 29973
17-03-17 19:19:16.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:16.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:16.028 -07 000000433 INF: FPGA: Recv ZPIEZORD 25598
17-03-17 19:19:16.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:16.038 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.430 V. Piezo Error = -9.6 V.
17-03-17 19:19:16.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29975 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29974 (-132.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29970 (-132.1 uncal um), Max = 29980 (-132.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:19:16.038 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29975, posNoise = 5, negNoise = 5
17-03-17 19:19:16.038 -07 000000610 INF: Z Motor: After move to -0.132886, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:16.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:19:16.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:16.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:16.038 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:16.038 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:19:16.038 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:16.038 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:16.038 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:19:16.038 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:19:16.038 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:19:16.038 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:19:16.038 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:19:16.038 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:19:16.048 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:19:16.048 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:19:16.048 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:19:16.048 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:19:16.058 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 19:19:16.058 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 19:19:16.058 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:19:16.068 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 19:19:16.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 29206 150\n [Camera]
17-03-17 19:19:16.268 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:19:16.668 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:19:16.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:19:16.668 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:16.668 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:16.668 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 19:19:16.668 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:19:16.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:19:16.668 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:16.668 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:16.668 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 19:19:16.678 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:19:16.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:19:16.858 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29206 785
17-03-17 19:19:17.008 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:19:17.048 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:19:17.048 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:19:17.048 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:17.048 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:17.058 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:19:17.058 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:19:17.058 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:17.058 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:17.058 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:19:17.058 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:19:17.168 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.027603,
17-03-17 19:19:17.198 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:19:17.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:19:17.198 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:17.198 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:17.198 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:19:17.198 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:19:17.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:19:17.208 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:17.208 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:17.208 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 19:19:17.388 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:19:17.388 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:19:17.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 29206 150' command took 2 ms to send, 1318 ms to get response, and 1327 ms overall
17-03-17 19:19:17.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:19:17.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.13288911096042. ------
17-03-17 19:19:17.398 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:17.398 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13963 mm
17-03-17 19:19:17.398 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:19:17.398 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:19:17.398 -07 000000627 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 19:19:17.398 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30503, sync = True, waitForSettling = False)
17-03-17 19:19:17.398 -07 000000480 INF: Z Motor: Moving to -0.139634 mm, started at -0.132889 mm, distance = -6.74 um
17-03-17 19:19:17.398 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:17.408 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:19:17.408 -07 000000480 INF: FPGA: Xmit ZDACW 30503\n [Z Motor]
17-03-17 19:19:17.408 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:19:17.418 -07 000000480 INF: FPGA: 'ZDACW 30503' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:19:17.418 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:19:17.428 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:17.428 -07 000000551 INF: FPGA: Recv YRDPOS 127788
17-03-17 19:19:17.438 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 19:19:17.438 -07 000000627 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:17.438 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:17.438 -07 000000551 INF: FPGA: Recv ZDACR 30503
17-03-17 19:19:17.438 -07 000000627 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:19:17.438 -07 000000627 INF: Y Motor: Moving 1338 steps-14
17-03-17 19:19:17.448 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:19:17.448 -07 000000480 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 19:19:17.448 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:19:17.598 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:19:17.598 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:19:17.598 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:17.608 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:19:17.608 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:19:17.608 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:17.608 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:17.608 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:19:17.608 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 19:19:17.618 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:19:17.618 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:19:17.618 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 19:19:17.818 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 19:19:17.818 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 19:19:17.878 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:17.878 -07 000000482 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:19:17.888 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:19:17.888 -07 000000627 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:17.888 -07 000000627 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:19:17.888 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.837 mm, average velocity = 2.179 mm/sec
17-03-17 19:19:18.838 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:18.838 -07 000000626 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:19:18.848 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:18.848 -07 000000627 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:18.868 -07 000000627 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:19:18.868 -07 000000627 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:19:18.868 -07 000000627 INF: Y Motor: Moved to 63.2251 after 1462 ms (table move)
17-03-17 19:19:18.868 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139634 mm (DAC = 30503)
17-03-17 19:19:18.868 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:18.868 -07 000000478 INF: FPGA: Recv ZSGSRD 31040
17-03-17 19:19:18.878 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:19:18.878 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:18.878 -07 000000626 INF: FPGA: Recv ZSGSRD 31032
17-03-17 19:19:18.888 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:18.888 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:18.888 -07 000000486 INF: FPGA: Recv ZSGSRD 31017
17-03-17 19:19:18.898 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:19:18.898 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:18.898 -07 000000433 INF: FPGA: Recv ZSGSRD 31030
17-03-17 19:19:18.908 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:18.908 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:18.908 -07 000000551 INF: FPGA: Recv ZSGSRD 31026
17-03-17 19:19:18.918 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:18.918 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:18.918 -07 000000438 INF: FPGA: Recv ZSGSRD 31022
17-03-17 19:19:18.928 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:18.928 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:18.928 -07 000000623 INF: FPGA: Recv ZSGSRD 31024
17-03-17 19:19:18.938 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:18.938 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:18.938 -07 000000623 INF: FPGA: Recv ZSGSRD 31027
17-03-17 19:19:18.948 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:18.948 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:18.948 -07 000000626 INF: FPGA: Recv ZSGSRD 31025
17-03-17 19:19:18.958 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:18.958 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:18.958 -07 000000541 INF: FPGA: Recv ZSGSRD 31034
17-03-17 19:19:18.968 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:18.968 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:18.968 -07 000000482 INF: FPGA: Recv ZPIEZORD 27005
17-03-17 19:19:18.978 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:18.978 -07 000000382 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.654 V. Piezo Error = -8.9 V.
17-03-17 19:19:18.978 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31028 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31026 (-138.8 uncal um), StdDev = 7 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 31017 (-138.8 uncal um), Max = 31040 (-138.9 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 19:19:18.978 -07 000000382 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31028, posNoise = 12, negNoise = 11
17-03-17 19:19:18.978 -07 000000382 INF: Z Motor: After move to -0.139634, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:18.978 -07 000000382 INF: Z Motor: Settle wait time = 1465 ms, measure time = 106 ms (allowed 150 ms), total time = 1571 ms
17-03-17 19:19:18.978 -07 000000382 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:19:19.028 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-17 19:19:19.028 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:19:19.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:19.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:19.028 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:19.028 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:19.028 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:19:19.028 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:19.028 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:19:19.028 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:19:19.038 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:19:19.038 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:19:19.048 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:19:19.048 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:19:19.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:19:19.098 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:19:19.298 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:19:19.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:19:19.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:19:19.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) start.
17-03-17 19:19:19.338 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:19:19.338 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 19:19:19.338 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:19:19.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:19:19.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:19.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:19:19.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:19:19.438 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:19.438 -07 000000438 INF: Autofocus start
17-03-17 19:19:19.438 -07 000000438 INF: MeasureProfile start
17-03-17 19:19:19.438 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:19.448 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:19:19.448 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:19:19.448 -07 000000438 INF: MeasureProfile done
17-03-17 19:19:19.448 -07 000000438 INF: X=-77  Z correction [um]=-0.3782251
17-03-17 19:19:19.448 -07 000000438 INF: Autofocus finished
17-03-17 19:19:19.648 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:19:19.648 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:19:19.648 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.139653806345694. ----------
17-03-17 19:19:19.648 -07 000000610 INF: Cycle	24	Tile	5	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:19:19.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28933, sync = True, waitForSettling = True)
17-03-17 19:19:19.658 -07 000000610 INF: Z Motor: Moving to -0.132447 mm, started at -0.139654 mm, distance = 7.21 um
17-03-17 19:19:19.658 -07 000000610 INF: FPGA: Xmit ZDACW 28933\n [Z Motor]
17-03-17 19:19:19.658 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:19:19.668 -07 000000610 INF: FPGA: 'ZDACW 28933' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:19:19.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:19.668 -07 000000476 INF: FPGA: Recv ZDACR 28933
17-03-17 19:19:19.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:19.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:19:19.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:19.828 -07 000000623 INF: FPGA: Recv ZSGSRD 29904
17-03-17 19:19:19.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:19.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:19.838 -07 000000476 INF: FPGA: Recv ZSGSRD 29911
17-03-17 19:19:19.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:19.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:19.848 -07 000000626 INF: FPGA: Recv ZSGSRD 29904
17-03-17 19:19:19.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:19.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:19.858 -07 000000486 INF: FPGA: Recv ZSGSRD 29905
17-03-17 19:19:19.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:19.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:19.868 -07 000000438 INF: FPGA: Recv ZSGSRD 29912
17-03-17 19:19:19.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:19.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:19.878 -07 000000486 INF: FPGA: Recv ZSGSRD 29906
17-03-17 19:19:19.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:19.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:19.888 -07 000000438 INF: FPGA: Recv ZSGSRD 29905
17-03-17 19:19:19.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:19.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:19.898 -07 000000486 INF: FPGA: Recv ZSGSRD 29905
17-03-17 19:19:19.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:19.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:19.908 -07 000000626 INF: FPGA: Recv ZSGSRD 29906
17-03-17 19:19:19.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:19.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:19.918 -07 000000431 INF: FPGA: Recv ZSGSRD 29908
17-03-17 19:19:19.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:19.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:19.928 -07 000000626 INF: FPGA: Recv ZPIEZORD 25554
17-03-17 19:19:19.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:19.938 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.415 V. Piezo Error = -9.6 V.
17-03-17 19:19:19.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29907 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29906 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29904 (-131.6 uncal um), Max = 29912 (-131.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:19:19.938 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29907, posNoise = 5, negNoise = 3
17-03-17 19:19:19.938 -07 000000610 INF: Z Motor: After move to -0.132447, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:19.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:19:19.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:19.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:19.938 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:19.938 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:19:19.938 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:19.938 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:19:19.938 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:19:19.938 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:19.938 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:19:19.938 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:19:19.938 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:19:19.938 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:19:19.948 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:19:19.948 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:19:19.948 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:19:19.948 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:19:19.948 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:19:19.948 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:19:19.958 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:19:19.958 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:19:19.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 29110 150\n [Camera]
17-03-17 19:19:20.158 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:19:20.558 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:19:20.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:19:20.558 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:20.558 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:20.558 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 19:19:20.558 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:19:20.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:19:20.558 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:20.558 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:20.558 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:19:20.748 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29110 785
17-03-17 19:19:20.898 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:19:20.948 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:19:20.948 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:19:20.948 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:20.948 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:19:20.948 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:19:20.948 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:20.948 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:19:20.948 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:19:20.948 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:19:20.958 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:19:21.088 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:19:21.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:19:21.098 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:21.098 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:21.098 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 19:19:21.098 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:19:21.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:19:21.098 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:21.098 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:21.098 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 19:19:21.288 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:19:21.288 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:19:21.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 29110 150' command took 2 ms to send, 1321 ms to get response, and 1326 ms overall
17-03-17 19:19:21.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:19:21.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.13245226453478. ------
17-03-17 19:19:21.288 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:21.288 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13896 mm
17-03-17 19:19:21.288 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:19:21.288 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:19:21.288 -07 000000626 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 19:19:21.288 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30356, sync = True, waitForSettling = False)
17-03-17 19:19:21.288 -07 000000431 INF: Z Motor: Moving to -0.138961 mm, started at -0.132452 mm, distance = -6.51 um
17-03-17 19:19:21.288 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:21.298 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:19:21.298 -07 000000431 INF: FPGA: Xmit ZDACW 30356\n [Z Motor]
17-03-17 19:19:21.298 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:19:21.308 -07 000000431 INF: FPGA: 'ZDACW 30356' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:21.308 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:21.308 -07 000000478 INF: FPGA: Recv ZDACR 30356
17-03-17 19:19:21.318 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:21.318 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:21.318 -07 000000431 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 19:19:21.318 -07 000000438 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:19:21.328 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:19:21.328 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 19:19:21.328 -07 000000626 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:21.328 -07 000000626 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:19:21.328 -07 000000626 INF: Y Motor: Moving 1340 steps-15
17-03-17 19:19:21.338 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:19:21.488 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:19:21.488 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:19:21.488 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:21.488 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:19:21.488 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:19:21.488 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:21.488 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:21.498 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:19:21.498 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:19:21.498 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:19:21.528 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:19:21.528 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 19:19:21.678 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:19:21.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:19:21.708 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 19:19:21.708 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:19:21.748 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:21.748 -07 000000486 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:19:21.758 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:19:21.758 -07 000000626 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:21.758 -07 000000626 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 19:19:21.758 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-17 19:19:22.528 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.989471,
17-03-17 19:19:22.708 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:22.708 -07 000000476 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:19:22.718 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:22.718 -07 000000626 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:22.728 -07 000000626 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:19:22.728 -07 000000626 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:19:22.728 -07 000000626 INF: Y Motor: Moved to 64.0576 after 1438 ms (table move)
17-03-17 19:19:22.738 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138961 mm (DAC = 30356)
17-03-17 19:19:22.738 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:22.738 -07 000000486 INF: FPGA: Recv ZSGSRD 30925
17-03-17 19:19:22.748 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:22.748 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:22.748 -07 000000627 INF: FPGA: Recv ZSGSRD 30924
17-03-17 19:19:22.758 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:22.758 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:22.758 -07 000000626 INF: FPGA: Recv ZSGSRD 30928
17-03-17 19:19:22.768 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:22.768 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:22.768 -07 000000424 INF: FPGA: Recv ZSGSRD 30921
17-03-17 19:19:22.778 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:22.778 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:22.778 -07 000000593 INF: FPGA: Recv ZSGSRD 30918
17-03-17 19:19:22.788 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:22.788 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:22.788 -07 000000486 INF: FPGA: Recv ZSGSRD 30920
17-03-17 19:19:22.798 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:22.798 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:22.798 -07 000000627 INF: FPGA: Recv ZSGSRD 30920
17-03-17 19:19:22.808 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:22.808 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:22.808 -07 000000512 INF: FPGA: Recv ZSGSRD 30919
17-03-17 19:19:22.818 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:22.818 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:22.818 -07 000000551 INF: FPGA: Recv ZSGSRD 30919
17-03-17 19:19:22.828 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:22.828 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:22.828 -07 000000593 INF: FPGA: Recv ZSGSRD 30927
17-03-17 19:19:22.838 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:22.838 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:22.838 -07 000000486 INF: FPGA: Recv ZPIEZORD 26912
17-03-17 19:19:22.848 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:22.848 -07 000000623 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.632 V. Piezo Error = -8.8 V.
17-03-17 19:19:22.848 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30922 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30920 (-138.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30918 (-138.1 uncal um), Max = 30928 (-138.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:19:22.848 -07 000000623 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30922, posNoise = 6, negNoise = 4
17-03-17 19:19:22.848 -07 000000623 INF: Z Motor: After move to -0.138961, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:22.848 -07 000000623 INF: Z Motor: Settle wait time = 1441 ms, measure time = 110 ms (allowed 150 ms), total time = 1551 ms
17-03-17 19:19:22.848 -07 000000623 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 19:19:22.888 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 19:19:22.888 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:19:22.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:22.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:22.888 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:22.898 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:22.898 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:19:22.898 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:22.898 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:19:22.898 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:19:22.898 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:19:22.898 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:19:22.908 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:19:22.908 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:19:22.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:19:22.948 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:19:23.148 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:19:23.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:19:23.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:19:23.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 19:19:23.188 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:19:23.198 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 19:19:23.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 19:19:23.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:19:23.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:23.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:19:23.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:19:23.298 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:23.298 -07 000000593 INF: Autofocus start
17-03-17 19:19:23.298 -07 000000593 INF: MeasureProfile start
17-03-17 19:19:23.308 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:23.308 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:19:23.308 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:19:23.318 -07 000000593 INF: MeasureProfile done
17-03-17 19:19:23.318 -07 000000593 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:19:23.318 -07 000000593 INF: Autofocus finished
17-03-17 19:19:23.508 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:19:23.508 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:19:23.518 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.138972839858667. ----------
17-03-17 19:19:23.518 -07 000000610 INF: Cycle	24	Tile	6	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:19:23.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28863, sync = True, waitForSettling = True)
17-03-17 19:19:23.518 -07 000000610 INF: Z Motor: Moving to -0.132126 mm, started at -0.138973 mm, distance = 6.85 um
17-03-17 19:19:23.518 -07 000000610 INF: FPGA: Xmit ZDACW 28863\n [Z Motor]
17-03-17 19:19:23.518 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:19:23.528 -07 000000610 INF: FPGA: 'ZDACW 28863' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:19:23.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:23.528 -07 000000541 INF: FPGA: Recv ZDACR 28863
17-03-17 19:19:23.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:23.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:19:23.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:23.688 -07 000000623 INF: FPGA: Recv ZSGSRD 29859
17-03-17 19:19:23.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:23.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:23.698 -07 000000512 INF: FPGA: Recv ZSGSRD 29858
17-03-17 19:19:23.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:23.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:23.708 -07 000000382 INF: FPGA: Recv ZSGSRD 29853
17-03-17 19:19:23.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:23.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:23.718 -07 000000475 INF: FPGA: Recv ZSGSRD 29857
17-03-17 19:19:23.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:23.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:23.728 -07 000000541 INF: FPGA: Recv ZSGSRD 29860
17-03-17 19:19:23.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:23.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:23.738 -07 000000623 INF: FPGA: Recv ZSGSRD 29855
17-03-17 19:19:23.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:23.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:23.748 -07 000000478 INF: FPGA: Recv ZSGSRD 29861
17-03-17 19:19:23.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:23.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:23.758 -07 000000623 INF: FPGA: Recv ZSGSRD 29860
17-03-17 19:19:23.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:23.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:23.768 -07 000000478 INF: FPGA: Recv ZSGSRD 29859
17-03-17 19:19:23.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:23.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:23.778 -07 000000623 INF: FPGA: Recv ZSGSRD 29858
17-03-17 19:19:23.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:23.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:23.788 -07 000000478 INF: FPGA: Recv ZPIEZORD 25494
17-03-17 19:19:23.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:23.798 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -9.6 V.
17-03-17 19:19:23.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29858 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29858 (-131.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29853 (-131.3 uncal um), Max = 29861 (-131.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:19:23.798 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29858, posNoise = 3, negNoise = 5
17-03-17 19:19:23.798 -07 000000610 INF: Z Motor: After move to -0.132126, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:23.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:19:23.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:23.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:23.798 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:23.798 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:23.798 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:19:23.798 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:23.798 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:19:23.798 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:19:23.798 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:19:23.798 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:19:23.798 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:19:23.798 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:19:23.808 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:19:23.808 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:19:23.808 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:19:23.808 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:19:23.818 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:19:23.818 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:19:23.818 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:19:23.818 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:19:23.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 29040 150\n [Camera]
17-03-17 19:19:24.018 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:19:24.418 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:19:24.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:19:24.418 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:24.418 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:24.418 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 19:19:24.418 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:19:24.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:19:24.418 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:24.418 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:24.418 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 19:19:24.608 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29040 785
17-03-17 19:19:24.758 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:19:24.808 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:19:24.808 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:19:24.808 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:24.808 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:19:24.808 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:19:24.808 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:24.808 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:24.808 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:19:24.808 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:24.818 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:19:24.948 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:19:24.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:19:24.948 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:25.088 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:19:25.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:19:25.088 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:25.088 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:25.088 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 19:19:25.098 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:25.098 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:19:25.138 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:19:25.148 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:19:25.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 29040 150' command took 2 ms to send, 1320 ms to get response, and 1326 ms overall
17-03-17 19:19:25.148 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:19:25.148 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.132137478139834. ------
17-03-17 19:19:25.148 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:25.148 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13868 mm
17-03-17 19:19:25.148 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:19:25.148 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:19:25.148 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30295, sync = True, waitForSettling = False)
17-03-17 19:19:25.148 -07 000000627 INF: Z Motor: Moving to -0.138682 mm, started at -0.132137 mm, distance = -6.54 um
17-03-17 19:19:25.158 -07 000000627 INF: FPGA: Xmit ZDACW 30295\n [Z Motor]
17-03-17 19:19:25.158 -07 000000438 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 19:19:25.168 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:25.498 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:19:25.498 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:19:25.498 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:25.498 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 19:19:25.498 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:19:25.498 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:25.498 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:19:25.508 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:19:25.508 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 551 ms.
17-03-17 19:19:25.508 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 19:19:25.508 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:25.508 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:19:25.508 -07 000000478 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:19:25.508 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 359 ms to get response, and 363 ms overall
17-03-17 19:19:25.518 -07 000000627 INF: FPGA: 'ZDACW 30295' command took 0 ms to send, 349 ms to get response, and 359 ms overall
17-03-17 19:19:25.518 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:19:25.518 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 339 ms to get response, and 358 ms overall
17-03-17 19:19:25.518 -07 000000438 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:25.518 -07 000000438 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:19:25.518 -07 000000438 INF: Y Motor: Moving 1336 steps-10
17-03-17 19:19:25.528 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:19:25.538 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:25.538 -07 000000478 INF: FPGA: Recv ZDACR 30295
17-03-17 19:19:25.548 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:19:25.548 -07 000000627 INF: Z Motor: MoveAbsStepped took 390 ms (did NOT wait for settling yet))
17-03-17 19:19:25.718 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:19:25.718 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:19:25.898 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 19:19:25.898 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:19:25.928 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:25.938 -07 000000478 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:19:25.938 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:19:25.938 -07 000000438 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:25.938 -07 000000438 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:19:25.938 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.835 mm, average velocity = 2.158 mm/sec
17-03-17 19:19:26.678 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:19:26.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:19:26.888 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:26.888 -07 000000478 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:19:26.898 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:26.898 -07 000000438 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:26.918 -07 000000438 INF: Y Motor: After move to 64.892609, error = -0.012726, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:19:26.918 -07 000000438 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:19:26.918 -07 000000438 INF: Y Motor: Moved to 64.8799 after 1761 ms (table move)
17-03-17 19:19:26.918 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138682 mm (DAC = 30295)
17-03-17 19:19:26.918 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:26.918 -07 000000627 INF: FPGA: Recv ZSGSRD 30878
17-03-17 19:19:26.928 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:19:26.928 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:26.928 -07 000000382 INF: FPGA: Recv ZSGSRD 30866
17-03-17 19:19:26.938 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:26.938 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:26.938 -07 000000480 INF: FPGA: Recv ZSGSRD 30878
17-03-17 19:19:26.948 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:26.948 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:26.948 -07 000000478 INF: FPGA: Recv ZSGSRD 30876
17-03-17 19:19:26.958 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:26.958 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:26.958 -07 000000623 INF: FPGA: Recv ZSGSRD 30880
17-03-17 19:19:26.968 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:26.968 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:26.968 -07 000000627 INF: FPGA: Recv ZSGSRD 30878
17-03-17 19:19:26.978 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:26.978 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:26.978 -07 000000480 INF: FPGA: Recv ZSGSRD 30887
17-03-17 19:19:26.988 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:26.988 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:26.988 -07 000000478 INF: FPGA: Recv ZSGSRD 30886
17-03-17 19:19:26.998 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:26.998 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:26.998 -07 000000623 INF: FPGA: Recv ZSGSRD 30872
17-03-17 19:19:27.008 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:27.008 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:27.008 -07 000000478 INF: FPGA: Recv ZSGSRD 30868
17-03-17 19:19:27.018 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:27.018 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:27.018 -07 000000627 INF: FPGA: Recv ZPIEZORD 26858
17-03-17 19:19:27.028 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:27.028 -07 000000429 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.623 V. Piezo Error = -8.9 V.
17-03-17 19:19:27.028 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30877 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30878 (-137.9 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30866 (-137.8 uncal um), Max = 30887 (-137.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 19:19:27.028 -07 000000429 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30877, posNoise = 10, negNoise = 11
17-03-17 19:19:27.028 -07 000000429 INF: Z Motor: After move to -0.138682, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:27.028 -07 000000429 INF: Z Motor: Settle wait time = 1764 ms, measure time = 106 ms (allowed 150 ms), total time = 1870 ms
17-03-17 19:19:27.028 -07 000000429 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:19:27.078 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1923 ms
17-03-17 19:19:27.078 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:19:27.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:27.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:27.078 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:27.078 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:27.078 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:19:27.078 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:27.078 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:19:27.078 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:19:27.088 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:19:27.088 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:19:27.098 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:19:27.098 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:19:27.098 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:19:27.138 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:19:27.338 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:19:27.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:19:27.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:19:27.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585694368, 0x0, 559484976) start.
17-03-17 19:19:27.388 -07 000000438 INF: FPGA: Recv @CAMSNAP 283
17-03-17 19:19:27.388 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 19:19:27.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 287 ms overall
17-03-17 19:19:27.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585694368, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 19:19:27.468 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:27.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:19:27.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 19:19:27.488 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:27.488 -07 000000438 INF: Autofocus start
17-03-17 19:19:27.488 -07 000000438 INF: MeasureProfile start
17-03-17 19:19:27.498 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:27.498 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:19:27.498 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:19:27.508 -07 000000438 INF: MeasureProfile done
17-03-17 19:19:27.508 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:19:27.508 -07 000000438 INF: Autofocus finished
17-03-17 19:19:27.698 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:19:27.698 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:19:27.698 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8798828125, Z-position -0.138683750312288. ----------
17-03-17 19:19:27.708 -07 000000610 INF: Cycle	24	Tile	7	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:19:27.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28802, sync = True, waitForSettling = True)
17-03-17 19:19:27.708 -07 000000610 INF: Z Motor: Moving to -0.131847 mm, started at -0.138684 mm, distance = 6.84 um
17-03-17 19:19:27.708 -07 000000610 INF: FPGA: Xmit ZDACW 28802\n [Z Motor]
17-03-17 19:19:27.708 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:19:27.718 -07 000000610 INF: FPGA: 'ZDACW 28802' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:19:27.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:27.718 -07 000000478 INF: FPGA: Recv ZDACR 28802
17-03-17 19:19:27.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:27.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:19:27.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:27.888 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 4.004458,
17-03-17 19:19:27.888 -07 000000478 INF: FPGA: Recv ZSGSRD 29819
17-03-17 19:19:27.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 19:19:27.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:27.898 -07 000000382 INF: FPGA: Recv ZSGSRD 29814
17-03-17 19:19:27.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:27.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:27.918 -07 000000623 INF: FPGA: Recv ZSGSRD 29818
17-03-17 19:19:27.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:19:27.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:27.928 -07 000000429 INF: FPGA: Recv ZSGSRD 29815
17-03-17 19:19:27.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:27.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:27.948 -07 000000438 INF: FPGA: Recv ZSGSRD 29810
17-03-17 19:19:27.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:19:27.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:27.958 -07 000000551 INF: FPGA: Recv ZSGSRD 29811
17-03-17 19:19:27.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:27.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:27.988 -07 000000438 INF: FPGA: Recv ZSGSRD 29812
17-03-17 19:19:27.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:19:27.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:27.998 -07 000000382 INF: FPGA: Recv ZSGSRD 29819
17-03-17 19:19:28.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:28.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:28.008 -07 000000429 INF: FPGA: Recv ZSGSRD 29808
17-03-17 19:19:28.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:28.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:28.018 -07 000000480 INF: FPGA: Recv ZSGSRD 29814
17-03-17 19:19:28.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:28.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:28.028 -07 000000551 INF: FPGA: Recv ZPIEZORD 25466
17-03-17 19:19:28.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:28.038 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.395 V. Piezo Error = -9.5 V.
17-03-17 19:19:28.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29814 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29814 (-131.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29808 (-131.0 uncal um), Max = 29819 (-131.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:19:28.038 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29814, posNoise = 5, negNoise = 6
17-03-17 19:19:28.038 -07 000000610 INF: Z Motor: After move to -0.131847, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:28.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 328 ms)
17-03-17 19:19:28.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:28.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:28.038 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:28.038 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:28.038 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:19:28.038 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:19:28.038 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:19:28.038 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:28.038 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:19:28.038 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:19:28.038 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:19:28.038 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:19:28.048 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:19:28.048 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:19:28.048 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:19:28.048 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:19:28.058 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:19:28.058 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:19:28.058 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:19:28.058 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:19:28.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28979 150\n [Camera]
17-03-17 19:19:28.258 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:19:28.658 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:19:28.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:19:28.658 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:28.658 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:19:28.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:19:28.658 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:28.668 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:28.668 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2604775752, 0x0, 391868352) start.
17-03-17 19:19:28.678 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:28.678 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 19:19:28.848 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28979 785
17-03-17 19:19:28.998 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:19:29.048 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2604775752, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 19:19:29.048 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:19:29.048 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:29.048 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:19:29.048 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:19:29.048 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:29.048 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:29.048 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:19:29.048 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:29.058 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:19:29.198 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:19:29.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:19:29.198 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:29.198 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:19:29.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:19:29.198 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:29.198 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:29.198 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:19:29.208 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:29.208 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:19:29.388 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-17 19:19:29.388 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:19:29.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28979 150' command took 2 ms to send, 1322 ms to get response, and 1327 ms overall
17-03-17 19:19:29.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:19:29.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8798828125, Z-Position -0.131854812805596. ------
17-03-17 19:19:29.388 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:29.388 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13846 mm
17-03-17 19:19:29.388 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:19:29.398 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:19:29.398 -07 000000623 INF: Y Motor: Moving to 65.7226 mm, started at 64.8799 mm, delta = 0.8427 mm
17-03-17 19:19:29.398 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:29.398 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30247, sync = True, waitForSettling = False)
17-03-17 19:19:29.398 -07 000000431 INF: Z Motor: Moving to -0.138462 mm, started at -0.131855 mm, distance = -6.61 um
17-03-17 19:19:29.408 -07 000000431 INF: FPGA: Xmit ZDACW 30247\n [Z Motor]
17-03-17 19:19:29.608 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 19:19:29.608 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:19:29.608 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:19:29.608 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:19:29.608 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:29.608 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:29.608 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:19:29.608 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:19:29.608 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 19:19:29.618 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 19:19:29.618 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:29.618 -07 000000627 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:19:29.618 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 226 ms to get response, and 230 ms overall
17-03-17 19:19:29.618 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 217 ms to get response, and 224 ms overall
17-03-17 19:19:29.618 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 19:19:29.618 -07 000000431 INF: FPGA: 'ZDACW 30247' command took 0 ms to send, 208 ms to get response, and 225 ms overall
17-03-17 19:19:29.618 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:29.618 -07 000000623 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:29.618 -07 000000623 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:19:29.618 -07 000000623 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:19:29.628 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:19:29.628 -07 000000627 INF: FPGA: Recv ZDACR 30247
17-03-17 19:19:29.628 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:19:29.628 -07 000000431 INF: Z Motor: MoveAbsStepped took 228 ms (did NOT wait for settling yet))
17-03-17 19:19:29.638 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:19:29.838 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:19:29.838 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-17 19:19:29.998 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:19:29.998 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 19:19:30.038 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:30.038 -07 000000431 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:19:30.048 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:19:30.048 -07 000000623 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:30.048 -07 000000623 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:19:30.048 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.843 mm, average velocity = 2.229 mm/sec
17-03-17 19:19:30.998 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:30.998 -07 000000431 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:19:31.008 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:31.008 -07 000000623 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:31.028 -07 000000623 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:19:31.028 -07 000000623 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:19:31.028 -07 000000623 INF: Y Motor: Moved to 65.7148 after 1630 ms (table move)
17-03-17 19:19:31.028 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138462 mm (DAC = 30247)
17-03-17 19:19:31.028 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:31.028 -07 000000431 INF: FPGA: Recv ZSGSRD 30853
17-03-17 19:19:31.038 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:19:31.038 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:31.038 -07 000000551 INF: FPGA: Recv ZSGSRD 30844
17-03-17 19:19:31.048 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:31.048 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:31.048 -07 000000623 INF: FPGA: Recv ZSGSRD 30845
17-03-17 19:19:31.058 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:31.058 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:31.058 -07 000000627 INF: FPGA: Recv ZSGSRD 30841
17-03-17 19:19:31.068 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:31.068 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:31.068 -07 000000627 INF: FPGA: Recv ZSGSRD 30842
17-03-17 19:19:31.078 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:31.078 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:31.078 -07 000000627 INF: FPGA: Recv ZSGSRD 30850
17-03-17 19:19:31.088 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:31.088 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:31.088 -07 000000627 INF: FPGA: Recv ZSGSRD 30842
17-03-17 19:19:31.098 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:31.098 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:31.098 -07 000000627 INF: FPGA: Recv ZSGSRD 30838
17-03-17 19:19:31.108 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:31.108 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:31.108 -07 000000627 INF: FPGA: Recv ZSGSRD 30834
17-03-17 19:19:31.118 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:31.118 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:31.118 -07 000000431 INF: FPGA: Recv ZSGSRD 30844
17-03-17 19:19:31.128 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:31.128 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:31.128 -07 000000431 INF: FPGA: Recv ZPIEZORD 26858
17-03-17 19:19:31.138 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:31.138 -07 000000382 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.615 V. Piezo Error = -8.8 V.
17-03-17 19:19:31.138 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30843 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30843 (-137.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30834 (-137.6 uncal um), Max = 30853 (-137.7 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:19:31.138 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30843, posNoise = 10, negNoise = 9
17-03-17 19:19:31.138 -07 000000382 INF: Z Motor: After move to -0.138462, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:31.138 -07 000000382 INF: Z Motor: Settle wait time = 1633 ms, measure time = 103 ms (allowed 150 ms), total time = 1736 ms
17-03-17 19:19:31.138 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:19:31.188 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1792 ms
17-03-17 19:19:31.188 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:19:31.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:31.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:31.188 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:31.188 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:31.198 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:19:31.198 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:31.198 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:19:31.198 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:19:31.198 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:19:31.198 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:19:31.208 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:19:31.208 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:19:31.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:19:31.248 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:19:31.448 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:19:31.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:19:31.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:19:31.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585694368, 0x0, 559484976) start.
17-03-17 19:19:31.488 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:19:31.488 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 19:19:31.488 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 19:19:31.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585694368, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:19:31.568 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:31.568 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:19:31.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:19:31.588 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:31.588 -07 000000382 INF: Autofocus start
17-03-17 19:19:31.588 -07 000000382 INF: MeasureProfile start
17-03-17 19:19:31.588 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:31.598 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:19:31.598 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:19:31.598 -07 000000382 INF: MeasureProfile done
17-03-17 19:19:31.598 -07 000000382 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:19:31.598 -07 000000382 INF: Autofocus finished
17-03-17 19:19:31.678 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:19:31.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:19:31.798 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:19:31.798 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:19:31.798 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.138465327099468. ----------
17-03-17 19:19:31.798 -07 000000610 INF: Cycle	24	Tile	8	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:19:31.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28771, sync = True, waitForSettling = True)
17-03-17 19:19:31.808 -07 000000610 INF: Z Motor: Moving to -0.131705 mm, started at -0.138465 mm, distance = 6.76 um
17-03-17 19:19:31.808 -07 000000610 INF: FPGA: Xmit ZDACW 28771\n [Z Motor]
17-03-17 19:19:31.808 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:19:31.818 -07 000000610 INF: FPGA: 'ZDACW 28771' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:19:31.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:31.818 -07 000000551 INF: FPGA: Recv ZDACR 28771
17-03-17 19:19:31.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:31.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:19:31.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:31.978 -07 000000480 INF: FPGA: Recv ZSGSRD 29790
17-03-17 19:19:31.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:31.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:31.988 -07 000000382 INF: FPGA: Recv ZSGSRD 29793
17-03-17 19:19:31.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:31.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:31.998 -07 000000627 INF: FPGA: Recv ZSGSRD 29792
17-03-17 19:19:32.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:32.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:32.008 -07 000000480 INF: FPGA: Recv ZSGSRD 29789
17-03-17 19:19:32.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:32.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:32.018 -07 000000382 INF: FPGA: Recv ZSGSRD 29792
17-03-17 19:19:32.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:32.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:32.028 -07 000000431 INF: FPGA: Recv ZSGSRD 29790
17-03-17 19:19:32.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:32.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:32.038 -07 000000626 INF: FPGA: Recv ZSGSRD 29792
17-03-17 19:19:32.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:32.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:32.048 -07 000000623 INF: FPGA: Recv ZSGSRD 29790
17-03-17 19:19:32.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:32.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:32.058 -07 000000431 INF: FPGA: Recv ZSGSRD 29789
17-03-17 19:19:32.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:32.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:32.068 -07 000000626 INF: FPGA: Recv ZSGSRD 29794
17-03-17 19:19:32.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:32.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:32.078 -07 000000623 INF: FPGA: Recv ZPIEZORD 25482
17-03-17 19:19:32.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:32.088 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.5 V.
17-03-17 19:19:32.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29791 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29791 (-130.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29789 (-130.9 uncal um), Max = 29794 (-130.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 19:19:32.088 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29791, posNoise = 3, negNoise = 2
17-03-17 19:19:32.088 -07 000000610 INF: Z Motor: After move to -0.131705, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:32.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:19:32.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:32.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:32.088 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:32.088 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:32.088 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:19:32.088 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:32.088 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:19:32.088 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:19:32.088 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:19:32.088 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:19:32.098 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:19:32.098 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:19:32.098 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:19:32.098 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:19:32.098 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:19:32.098 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:19:32.108 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:19:32.108 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:19:32.108 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:19:32.108 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:19:32.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28948 150\n [Camera]
17-03-17 19:19:32.308 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:19:32.708 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:19:32.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:19:32.708 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:32.708 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:32.708 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2644603320, 0x0, 391868352) start.
17-03-17 19:19:32.708 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:19:32.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:19:32.708 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:32.708 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:32.708 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 19:19:32.898 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28948 785
17-03-17 19:19:33.048 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:19:33.108 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2644603320, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:19:33.108 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:19:33.108 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:33.108 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 19:19:33.108 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:19:33.108 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:33.118 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:19:33.118 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:19:33.118 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:33.118 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:19:33.238 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:19:33.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:19:33.248 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:33.248 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:33.248 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 19:19:33.248 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:19:33.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:19:33.248 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:33.248 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:33.248 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:19:33.308 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.988112,
17-03-17 19:19:33.438 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-17 19:19:33.438 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:19:33.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28948 150' command took 2 ms to send, 1320 ms to get response, and 1326 ms overall
17-03-17 19:19:33.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:19:33.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.131707055926336. ------
17-03-17 19:19:33.438 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:33.438 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13801 mm
17-03-17 19:19:33.438 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:19:33.448 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:33.448 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:19:33.448 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:19:33.448 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30147, sync = True, waitForSettling = False)
17-03-17 19:19:33.448 -07 000000431 INF: Z Motor: Moving to -0.138004 mm, started at -0.131707 mm, distance = -6.30 um
17-03-17 19:19:33.448 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:19:33.448 -07 000000551 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 19:19:33.458 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:33.458 -07 000000512 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:19:33.468 -07 000000431 INF: FPGA: Xmit ZDACW 30147\n [Z Motor]
17-03-17 19:19:33.468 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:19:33.468 -07 000000551 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:33.468 -07 000000551 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:19:33.468 -07 000000551 INF: Y Motor: Moving 1340 steps-16
17-03-17 19:19:33.468 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:19:33.478 -07 000000431 INF: FPGA: 'ZDACW 30147' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:19:33.478 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:33.478 -07 000000512 INF: FPGA: Recv ZDACR 30147
17-03-17 19:19:33.488 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:19:33.488 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:33.488 -07 000000431 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 19:19:33.648 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:19:33.648 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:19:33.648 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:33.648 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 19:19:33.648 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:19:33.648 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:33.648 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:19:33.648 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 19:19:33.648 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:19:33.658 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 19:19:33.658 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 19:19:33.658 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:19:33.858 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 19:19:33.858 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:19:33.898 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:33.898 -07 000000627 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:19:33.908 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:19:33.908 -07 000000551 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:33.908 -07 000000551 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:19:33.908 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 19:19:34.858 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:34.858 -07 000000486 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:19:34.868 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:34.868 -07 000000551 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:34.888 -07 000000551 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:19:34.888 -07 000000551 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:19:34.888 -07 000000551 INF: Y Motor: Moved to 66.5400 after 1440 ms (table move)
17-03-17 19:19:34.888 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138004 mm (DAC = 30147)
17-03-17 19:19:34.888 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:34.898 -07 000000476 INF: FPGA: Recv ZSGSRD 30768
17-03-17 19:19:34.898 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:19:34.898 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:34.898 -07 000000551 INF: FPGA: Recv ZSGSRD 30775
17-03-17 19:19:34.908 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:34.908 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:34.908 -07 000000551 INF: FPGA: Recv ZSGSRD 30770
17-03-17 19:19:34.918 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:34.918 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:34.918 -07 000000486 INF: FPGA: Recv ZSGSRD 30778
17-03-17 19:19:34.928 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:34.928 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:34.928 -07 000000551 INF: FPGA: Recv ZSGSRD 30776
17-03-17 19:19:34.938 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:34.938 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:34.938 -07 000000627 INF: FPGA: Recv ZSGSRD 30774
17-03-17 19:19:34.948 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:34.948 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:34.948 -07 000000551 INF: FPGA: Recv ZSGSRD 30776
17-03-17 19:19:34.958 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:34.958 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:34.958 -07 000000627 INF: FPGA: Recv ZSGSRD 30768
17-03-17 19:19:34.968 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:34.968 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:34.968 -07 000000476 INF: FPGA: Recv ZSGSRD 30771
17-03-17 19:19:34.978 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:34.978 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:34.978 -07 000000627 INF: FPGA: Recv ZSGSRD 30771
17-03-17 19:19:34.988 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:34.988 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:34.988 -07 000000476 INF: FPGA: Recv ZPIEZORD 26752
17-03-17 19:19:34.998 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:34.998 -07 000000480 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.600 V. Piezo Error = -8.9 V.
17-03-17 19:19:34.998 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30773 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30772 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30768 (-137.2 uncal um), Max = 30778 (-137.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:19:34.998 -07 000000480 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30773, posNoise = 5, negNoise = 5
17-03-17 19:19:34.998 -07 000000480 INF: Z Motor: After move to -0.138004, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:34.998 -07 000000480 INF: Z Motor: Settle wait time = 1443 ms, measure time = 105 ms (allowed 150 ms), total time = 1548 ms
17-03-17 19:19:34.998 -07 000000480 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:19:35.048 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 19:19:35.048 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:19:35.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:35.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:35.048 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:35.048 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:35.048 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:19:35.048 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:35.048 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:19:35.048 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:19:35.048 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:19:35.058 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:19:35.068 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:19:35.068 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:19:35.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:19:35.118 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:19:35.318 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:19:35.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:19:35.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:19:35.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2807500560, 0x0, 559484976) start.
17-03-17 19:19:35.348 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:19:35.358 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 19:19:35.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:19:35.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2807500560, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:19:35.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:35.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:19:35.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:19:35.458 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:35.458 -07 000000627 INF: Autofocus start
17-03-17 19:19:35.458 -07 000000627 INF: MeasureProfile start
17-03-17 19:19:35.458 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:35.468 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:19:35.468 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:19:35.478 -07 000000627 INF: MeasureProfile done
17-03-17 19:19:35.478 -07 000000627 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:19:35.478 -07 000000627 INF: Autofocus finished
17-03-17 19:19:35.668 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:19:35.668 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:19:35.668 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.138015632249545. ----------
17-03-17 19:19:35.668 -07 000000610 INF: Cycle	24	Tile	9	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:19:35.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28655, sync = True, waitForSettling = True)
17-03-17 19:19:35.678 -07 000000610 INF: Z Motor: Moving to -0.131174 mm, started at -0.138016 mm, distance = 6.84 um
17-03-17 19:19:35.678 -07 000000610 INF: FPGA: Xmit ZDACW 28655\n [Z Motor]
17-03-17 19:19:35.678 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:19:35.688 -07 000000610 INF: FPGA: 'ZDACW 28655' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:35.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:35.688 -07 000000486 INF: FPGA: Recv ZDACR 28655
17-03-17 19:19:35.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:35.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:19:35.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:35.848 -07 000000627 INF: FPGA: Recv ZSGSRD 29711
17-03-17 19:19:35.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:35.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:35.858 -07 000000476 INF: FPGA: Recv ZSGSRD 29706
17-03-17 19:19:35.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:35.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:35.868 -07 000000551 INF: FPGA: Recv ZSGSRD 29706
17-03-17 19:19:35.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:35.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:35.878 -07 000000627 INF: FPGA: Recv ZSGSRD 29712
17-03-17 19:19:35.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:35.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:35.888 -07 000000486 INF: FPGA: Recv ZSGSRD 29710
17-03-17 19:19:35.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:35.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:35.898 -07 000000627 INF: FPGA: Recv ZSGSRD 29705
17-03-17 19:19:35.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:35.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:35.908 -07 000000480 INF: FPGA: Recv ZSGSRD 29708
17-03-17 19:19:35.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:35.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:35.918 -07 000000486 INF: FPGA: Recv ZSGSRD 29709
17-03-17 19:19:35.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:35.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:35.928 -07 000000480 INF: FPGA: Recv ZSGSRD 29711
17-03-17 19:19:35.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:35.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:35.938 -07 000000486 INF: FPGA: Recv ZSGSRD 29705
17-03-17 19:19:35.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:35.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:35.948 -07 000000476 INF: FPGA: Recv ZPIEZORD 25379
17-03-17 19:19:35.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:35.958 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -9.5 V.
17-03-17 19:19:35.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29708 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29708 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29705 (-130.4 uncal um), Max = 29712 (-130.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:19:35.958 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29708, posNoise = 4, negNoise = 3
17-03-17 19:19:35.958 -07 000000610 INF: Z Motor: After move to -0.131174, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:35.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:19:35.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:35.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:35.958 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:35.958 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:35.958 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:19:35.958 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:35.958 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:19:35.958 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:19:35.958 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:19:35.958 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:19:35.958 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:19:35.958 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:19:35.958 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:19:35.958 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:19:35.958 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:19:35.968 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:19:35.968 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:19:35.968 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:19:35.978 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:19:35.978 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:19:35.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28831 150\n [Camera]
17-03-17 19:19:36.178 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:19:36.578 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:19:36.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:19:36.578 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:36.578 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:36.578 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1433403608, 0x0, 391868352) start.
17-03-17 19:19:36.578 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:19:36.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:19:36.578 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:36.578 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:36.578 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1468825872, 0x0, 418435064) start.
17-03-17 19:19:36.678 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:19:36.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:19:36.768 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28831 785
17-03-17 19:19:36.918 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:19:36.958 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1433403608, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:19:36.958 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:19:36.958 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:36.958 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1468825872, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:19:36.958 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:19:36.958 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:36.958 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:19:36.958 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:19:36.958 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:36.968 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:19:37.108 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:19:37.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:19:37.108 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:37.108 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:37.108 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:19:37.118 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:19:37.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:19:37.118 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:37.118 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:37.118 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:19:37.298 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:19:37.308 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:19:37.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28831 150' command took 2 ms to send, 1320 ms to get response, and 1326 ms overall
17-03-17 19:19:37.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:19:37.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.13117384631857. ------
17-03-17 19:19:37.308 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:37.308 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13788 mm
17-03-17 19:19:37.308 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:19:37.308 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:19:37.308 -07 000000551 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 19:19:37.308 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30119, sync = True, waitForSettling = False)
17-03-17 19:19:37.308 -07 000000486 INF: Z Motor: Moving to -0.137876 mm, started at -0.131174 mm, distance = -6.70 um
17-03-17 19:19:37.308 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:37.318 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:19:37.318 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:37.318 -07 000000480 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:19:37.328 -07 000000486 INF: FPGA: Xmit ZDACW 30119\n [Z Motor]
17-03-17 19:19:37.328 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:19:37.328 -07 000000551 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:37.328 -07 000000551 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:19:37.328 -07 000000551 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:19:37.328 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:19:37.338 -07 000000486 INF: FPGA: 'ZDACW 30119' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:19:37.338 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:19:37.348 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:19:37.358 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:37.358 -07 000000482 INF: FPGA: Recv ZDACR 30119
17-03-17 19:19:37.368 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:19:37.368 -07 000000486 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 19:19:37.508 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:19:37.508 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:19:37.508 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:37.518 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:19:37.518 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:19:37.518 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:37.518 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:37.518 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:19:37.518 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:19:37.528 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:19:37.538 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:19:37.538 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:19:37.718 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 19:19:37.718 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:19:37.758 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:37.758 -07 000000482 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:19:37.768 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:19:37.768 -07 000000551 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:37.768 -07 000000551 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 19:19:37.768 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 19:19:38.668 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.993549,
17-03-17 19:19:38.718 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:38.718 -07 000000476 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:19:38.728 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:38.728 -07 000000551 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:38.748 -07 000000551 INF: Y Motor: After move to 67.382607, error = -0.009560, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:19:38.748 -07 000000551 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:19:38.748 -07 000000551 INF: Y Motor: Moved to 67.3730 after 1433 ms (table move)
17-03-17 19:19:38.748 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137876 mm (DAC = 30119)
17-03-17 19:19:38.748 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:38.748 -07 000000627 INF: FPGA: Recv ZSGSRD 30759
17-03-17 19:19:38.758 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:19:38.758 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:38.758 -07 000000486 INF: FPGA: Recv ZSGSRD 30750
17-03-17 19:19:38.768 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:38.768 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:38.768 -07 000000486 INF: FPGA: Recv ZSGSRD 30750
17-03-17 19:19:38.778 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:38.778 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:38.778 -07 000000486 INF: FPGA: Recv ZSGSRD 30749
17-03-17 19:19:38.788 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:38.788 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:38.788 -07 000000486 INF: FPGA: Recv ZSGSRD 30761
17-03-17 19:19:38.798 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:38.798 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:38.798 -07 000000486 INF: FPGA: Recv ZSGSRD 30760
17-03-17 19:19:38.808 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:38.808 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:38.808 -07 000000486 INF: FPGA: Recv ZSGSRD 30753
17-03-17 19:19:38.818 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:38.818 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:38.818 -07 000000486 INF: FPGA: Recv ZSGSRD 30752
17-03-17 19:19:38.828 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:38.828 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:38.828 -07 000000486 INF: FPGA: Recv ZSGSRD 30745
17-03-17 19:19:38.838 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:38.838 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:38.838 -07 000000486 INF: FPGA: Recv ZSGSRD 30754
17-03-17 19:19:38.848 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:38.848 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:38.848 -07 000000486 INF: FPGA: Recv ZPIEZORD 26734
17-03-17 19:19:38.858 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:38.858 -07 000000433 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.596 V. Piezo Error = -8.8 V.
17-03-17 19:19:38.858 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30753 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30752 (-137.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30745 (-137.0 uncal um), Max = 30761 (-137.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:19:38.858 -07 000000433 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30753, posNoise = 8, negNoise = 8
17-03-17 19:19:38.858 -07 000000433 INF: Z Motor: After move to -0.137876, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:38.858 -07 000000433 INF: Z Motor: Settle wait time = 1438 ms, measure time = 104 ms (allowed 150 ms), total time = 1542 ms
17-03-17 19:19:38.858 -07 000000433 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:19:38.908 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 19:19:38.908 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:19:38.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:38.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:38.908 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:38.908 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:38.908 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:19:38.908 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:38.908 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:19:38.908 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:19:38.918 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:19:38.918 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:19:38.928 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:19:38.928 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:19:38.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:19:38.978 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:19:39.178 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:19:39.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:19:39.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:19:39.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) start.
17-03-17 19:19:39.218 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:19:39.218 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 19:19:39.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 19:19:39.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:19:39.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:39.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:19:39.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:19:39.318 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:39.318 -07 000000541 INF: Autofocus start
17-03-17 19:19:39.318 -07 000000541 INF: MeasureProfile start
17-03-17 19:19:39.328 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:39.328 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:19:39.328 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:19:39.338 -07 000000541 INF: MeasureProfile done
17-03-17 19:19:39.338 -07 000000541 INF: X=48  Z correction [um]=0.2069503
17-03-17 19:19:39.338 -07 000000541 INF: Autofocus finished
17-03-17 19:19:39.528 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:19:39.528 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:19:39.528 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.373046875, Z-position -0.13788714800671. ----------
17-03-17 19:19:39.528 -07 000000610 INF: Cycle	24	Tile	10	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:19:39.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28677, sync = True, waitForSettling = True)
17-03-17 19:19:39.538 -07 000000610 INF: Z Motor: Moving to -0.131275 mm, started at -0.137887 mm, distance = 6.61 um
17-03-17 19:19:39.538 -07 000000610 INF: FPGA: Xmit ZDACW 28677\n [Z Motor]
17-03-17 19:19:39.538 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 19:19:39.548 -07 000000610 INF: FPGA: 'ZDACW 28677' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:19:39.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:39.548 -07 000000476 INF: FPGA: Recv ZDACR 28677
17-03-17 19:19:39.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:39.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:19:39.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:39.708 -07 000000541 INF: FPGA: Recv ZSGSRD 29732
17-03-17 19:19:39.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:39.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:39.718 -07 000000476 INF: FPGA: Recv ZSGSRD 29725
17-03-17 19:19:39.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:39.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:39.728 -07 000000541 INF: FPGA: Recv ZSGSRD 29721
17-03-17 19:19:39.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:39.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:39.738 -07 000000476 INF: FPGA: Recv ZSGSRD 29720
17-03-17 19:19:39.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:39.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:39.748 -07 000000541 INF: FPGA: Recv ZSGSRD 29726
17-03-17 19:19:39.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:39.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:39.758 -07 000000475 INF: FPGA: Recv ZSGSRD 29730
17-03-17 19:19:39.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:39.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:39.768 -07 000000541 INF: FPGA: Recv ZSGSRD 29720
17-03-17 19:19:39.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:39.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:39.778 -07 000000475 INF: FPGA: Recv ZSGSRD 29720
17-03-17 19:19:39.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:39.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:39.788 -07 000000627 INF: FPGA: Recv ZSGSRD 29721
17-03-17 19:19:39.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:39.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:39.798 -07 000000424 INF: FPGA: Recv ZSGSRD 29726
17-03-17 19:19:39.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:39.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:39.808 -07 000000627 INF: FPGA: Recv ZPIEZORD 25376
17-03-17 19:19:39.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:39.818 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.376 V. Piezo Error = -9.5 V.
17-03-17 19:19:39.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29724 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29723 (-130.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29720 (-130.5 uncal um), Max = 29732 (-130.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:19:39.818 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29724, posNoise = 8, negNoise = 4
17-03-17 19:19:39.818 -07 000000610 INF: Z Motor: After move to -0.131275, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:39.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:19:39.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:39.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:39.818 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:39.818 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:19:39.818 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:39.818 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:19:39.818 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:39.818 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:19:39.818 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:19:39.818 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:19:39.818 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:19:39.818 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:19:39.828 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:19:39.828 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:19:39.828 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:19:39.828 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:19:39.838 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:19:39.838 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:19:39.838 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:19:39.838 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:19:39.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28854 150\n [Camera]
17-03-17 19:19:40.038 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:19:40.438 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:19:40.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:19:40.438 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:40.438 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:40.438 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2237413704, 0x0, 391868352) start.
17-03-17 19:19:40.438 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:19:40.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:19:40.438 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:40.438 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:40.448 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:19:40.628 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28854 785
17-03-17 19:19:40.778 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:19:40.828 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2237413704, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:19:40.828 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:19:40.828 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:40.828 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:19:40.828 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:19:40.828 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:40.828 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:19:40.828 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:19:40.828 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:19:40.838 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:19:40.978 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:19:40.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:19:40.978 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:40.978 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:40.978 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 19:19:40.978 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:19:40.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:19:40.978 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:40.978 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:40.978 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 19:19:41.168 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:19:41.168 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:19:41.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28854 150' command took 2 ms to send, 1322 ms to get response, and 1326 ms overall
17-03-17 19:19:41.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:19:41.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.373046875, Z-Position -0.131276633712838. ------
17-03-17 19:19:41.168 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:41.168 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13723 mm
17-03-17 19:19:41.168 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:19:41.178 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:41.178 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:19:41.178 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:19:41.178 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:19:41.178 -07 000000627 INF: Y Motor: Moving to 68.2126 mm, started at 67.3730 mm, delta = 0.8396 mm
17-03-17 19:19:41.178 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29977, sync = True, waitForSettling = False)
17-03-17 19:19:41.178 -07 000000475 INF: Z Motor: Moving to -0.137226 mm, started at -0.131277 mm, distance = -5.95 um
17-03-17 19:19:41.188 -07 000000475 INF: FPGA: Xmit ZDACW 29977\n [Z Motor]
17-03-17 19:19:41.188 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:19:41.198 -07 000000475 INF: FPGA: 'ZDACW 29977' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:19:41.198 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:41.198 -07 000000431 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:19:41.208 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:19:41.208 -07 000000627 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:41.208 -07 000000627 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:19:41.208 -07 000000627 INF: Y Motor: Moving 1343 steps-21
17-03-17 19:19:41.208 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:41.208 -07 000000429 INF: FPGA: Recv ZDACR 29977
17-03-17 19:19:41.218 -07 000000475 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:19:41.218 -07 000000475 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:19:41.218 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:19:41.358 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:19:41.358 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:19:41.358 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:41.358 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:19:41.358 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:19:41.358 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:41.358 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:41.368 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:19:41.368 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:19:41.368 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:19:41.378 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:19:41.378 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:19:41.598 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 19:19:41.598 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 390 ms overall
17-03-17 19:19:41.628 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:41.628 -07 000000551 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:19:41.638 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:19:41.638 -07 000000627 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:41.638 -07 000000627 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 19:19:41.638 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.840 mm, average velocity = 2.153 mm/sec
17-03-17 19:19:41.678 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:19:41.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:19:42.588 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:42.588 -07 000000551 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:19:42.598 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:42.598 -07 000000627 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:42.608 -07 000000627 INF: Y Motor: After move to 68.212608, error = -0.006554, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:19:42.608 -07 000000627 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:19:42.608 -07 000000627 INF: Y Motor: Moved to 68.2061 after 1436 ms (table move)
17-03-17 19:19:42.618 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137226 mm (DAC = 29977)
17-03-17 19:19:42.618 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:42.618 -07 000000501 INF: FPGA: Recv ZSGSRD 30664
17-03-17 19:19:42.628 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:19:42.628 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:42.628 -07 000000433 INF: FPGA: Recv ZSGSRD 30663
17-03-17 19:19:42.638 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:42.638 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:42.638 -07 000000480 INF: FPGA: Recv ZSGSRD 30649
17-03-17 19:19:42.648 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:42.648 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:42.648 -07 000000431 INF: FPGA: Recv ZSGSRD 30651
17-03-17 19:19:42.658 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:42.658 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:42.658 -07 000000627 INF: FPGA: Recv ZSGSRD 30657
17-03-17 19:19:42.668 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:42.668 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:42.668 -07 000000626 INF: FPGA: Recv ZSGSRD 30649
17-03-17 19:19:42.678 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:42.678 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:42.678 -07 000000478 INF: FPGA: Recv ZSGSRD 30649
17-03-17 19:19:42.688 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:42.688 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:42.688 -07 000000480 INF: FPGA: Recv ZSGSRD 30648
17-03-17 19:19:42.698 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:42.698 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:42.698 -07 000000486 INF: FPGA: Recv ZSGSRD 30653
17-03-17 19:19:42.708 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:42.708 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:42.708 -07 000000627 INF: FPGA: Recv ZSGSRD 30656
17-03-17 19:19:42.718 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:42.718 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:42.718 -07 000000626 INF: FPGA: Recv ZPIEZORD 26601
17-03-17 19:19:42.728 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:42.728 -07 000000541 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.574 V. Piezo Error = -8.9 V.
17-03-17 19:19:42.728 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30654 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30652 (-136.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30648 (-136.4 uncal um), Max = 30664 (-136.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:19:42.728 -07 000000541 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30654, posNoise = 10, negNoise = 6
17-03-17 19:19:42.728 -07 000000541 INF: Z Motor: After move to -0.137226, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:42.728 -07 000000541 INF: Z Motor: Settle wait time = 1440 ms, measure time = 107 ms (allowed 150 ms), total time = 1547 ms
17-03-17 19:19:42.728 -07 000000541 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:19:42.778 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 19:19:42.778 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:19:42.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:42.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:42.778 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:42.778 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:19:42.778 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:42.778 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:42.788 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:19:42.788 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:19:42.788 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:19:42.788 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:19:42.798 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 19:19:42.798 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:19:42.798 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:19:42.848 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:19:43.048 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:19:43.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:19:43.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:19:43.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start.
17-03-17 19:19:43.078 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:19:43.088 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 19:19:43.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 19:19:43.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 19:19:43.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:43.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:19:43.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 19:19:43.188 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:43.188 -07 000000431 INF: Autofocus start
17-03-17 19:19:43.188 -07 000000431 INF: MeasureProfile start
17-03-17 19:19:43.188 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:43.198 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:19:43.198 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:19:43.198 -07 000000431 INF: MeasureProfile done
17-03-17 19:19:43.198 -07 000000431 INF: X=96  Z correction [um]=0.437849
17-03-17 19:19:43.198 -07 000000431 INF: Autofocus finished
17-03-17 19:19:43.398 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:19:43.398 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:19:43.398 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2060546875, Z-position -0.137251151004675. ----------
17-03-17 19:19:43.398 -07 000000610 INF: Cycle	24	Tile	11	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:19:43.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28585, sync = True, waitForSettling = True)
17-03-17 19:19:43.408 -07 000000610 INF: Z Motor: Moving to -0.130854 mm, started at -0.137251 mm, distance = 6.40 um
17-03-17 19:19:43.408 -07 000000610 INF: FPGA: Xmit ZDACW 28585\n [Z Motor]
17-03-17 19:19:43.408 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:19:43.418 -07 000000610 INF: FPGA: 'ZDACW 28585' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:19:43.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:43.418 -07 000000541 INF: FPGA: Recv ZDACR 28585
17-03-17 19:19:43.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:43.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:19:43.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:43.578 -07 000000551 INF: FPGA: Recv ZSGSRD 29659
17-03-17 19:19:43.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:43.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:43.588 -07 000000382 INF: FPGA: Recv ZSGSRD 29658
17-03-17 19:19:43.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:43.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:43.598 -07 000000478 INF: FPGA: Recv ZSGSRD 29656
17-03-17 19:19:43.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:43.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:43.608 -07 000000433 INF: FPGA: Recv ZSGSRD 29660
17-03-17 19:19:43.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:43.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:43.618 -07 000000482 INF: FPGA: Recv ZSGSRD 29665
17-03-17 19:19:43.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:43.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:43.628 -07 000000501 INF: FPGA: Recv ZSGSRD 29667
17-03-17 19:19:43.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:43.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:43.638 -07 000000424 INF: FPGA: Recv ZSGSRD 29667
17-03-17 19:19:43.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:43.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:43.648 -07 000000627 INF: FPGA: Recv ZSGSRD 29661
17-03-17 19:19:43.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:43.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:43.658 -07 000000431 INF: FPGA: Recv ZSGSRD 29657
17-03-17 19:19:43.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:43.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:43.668 -07 000000480 INF: FPGA: Recv ZSGSRD 29650
17-03-17 19:19:43.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:43.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:43.678 -07 000000486 INF: FPGA: Recv ZPIEZORD 25302
17-03-17 19:19:43.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:43.688 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.362 V. Piezo Error = -9.6 V.
17-03-17 19:19:43.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29660 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29660 (-130.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29650 (-130.0 uncal um), Max = 29667 (-130.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:19:43.688 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29660, posNoise = 7, negNoise = 10
17-03-17 19:19:43.688 -07 000000610 INF: Z Motor: After move to -0.130854, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:43.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:19:43.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:43.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:43.688 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:43.688 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:19:43.688 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:19:43.688 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:43.688 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:19:43.688 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:43.688 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:19:43.688 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:19:43.688 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:19:43.688 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:19:43.698 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:19:43.698 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:19:43.698 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:19:43.698 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:19:43.708 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:19:43.708 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:19:43.708 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 19:19:43.708 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:19:43.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28762 150\n [Camera]
17-03-17 19:19:43.918 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:19:44.028 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.990831,
17-03-17 19:19:44.318 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:19:44.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:19:44.318 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:44.318 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:44.318 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:19:44.318 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:19:44.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:19:44.318 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:44.318 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:44.318 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 19:19:44.508 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28762 785
17-03-17 19:19:44.658 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:19:44.698 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:19:44.698 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:19:44.698 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:44.698 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:44.698 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:19:44.708 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:19:44.708 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:19:44.708 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:44.718 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-17 19:19:44.728 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:19:44.848 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:19:44.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:19:44.848 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:44.988 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:19:44.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:19:44.988 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:44.988 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:44.988 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 19:19:44.988 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:44.988 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:19:45.038 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-17 19:19:45.038 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:19:45.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28762 150' command took 2 ms to send, 1317 ms to get response, and 1333 ms overall
17-03-17 19:19:45.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:19:45.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2060546875, Z-Position -0.130865484135765. ------
17-03-17 19:19:45.048 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:45.048 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13754 mm
17-03-17 19:19:45.048 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:19:45.048 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:45.048 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30045, sync = True, waitForSettling = False)
17-03-17 19:19:45.048 -07 000000627 INF: Z Motor: Moving to -0.137537 mm, started at -0.130865 mm, distance = -6.67 um
17-03-17 19:19:45.048 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:19:45.048 -07 000000541 INF: Y Motor: Moving to 69.0426 mm, started at 68.2061 mm, delta = 0.8366 mm
17-03-17 19:19:45.058 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:19:45.058 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:45.058 -07 000000478 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:19:45.068 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:19:45.068 -07 000000541 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:45.068 -07 000000541 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:19:45.068 -07 000000541 INF: Y Motor: Moving 1338 steps-13
17-03-17 19:19:45.068 -07 000000627 INF: FPGA: Xmit ZDACW 30045\n [Z Motor]
17-03-17 19:19:45.068 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:19:45.078 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:19:45.078 -07 000000627 INF: FPGA: 'ZDACW 30045' command took 3 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:19:45.088 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:19:45.098 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:45.098 -07 000000478 INF: FPGA: Recv ZDACR 30045
17-03-17 19:19:45.108 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:19:45.108 -07 000000627 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 19:19:45.278 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:19:45.278 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:19:45.378 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:19:45.378 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:19:45.378 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:45.378 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:19:45.378 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:19:45.378 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:45.378 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:45.388 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:45.388 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 536 ms.
17-03-17 19:19:45.388 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:19:45.458 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 19:19:45.458 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 396 ms overall
17-03-17 19:19:45.498 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:45.498 -07 000000627 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:19:45.508 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:19:45.508 -07 000000541 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:45.508 -07 000000541 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:19:45.508 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.837 mm, average velocity = 2.097 mm/sec
17-03-17 19:19:46.458 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:46.458 -07 000000433 INF: FPGA: Recv YRDPOS 141370
17-03-17 19:19:46.468 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:46.468 -07 000000541 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:46.488 -07 000000541 INF: Y Motor: After move to 69.042610, error = -0.014290, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:19:46.488 -07 000000541 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:19:46.488 -07 000000541 INF: Y Motor: Moved to 69.0283 after 1437 ms (table move)
17-03-17 19:19:46.488 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137537 mm (DAC = 30045)
17-03-17 19:19:46.488 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:46.498 -07 000000382 INF: FPGA: Recv ZSGSRD 30705
17-03-17 19:19:46.498 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 19:19:46.498 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:46.498 -07 000000541 INF: FPGA: Recv ZSGSRD 30704
17-03-17 19:19:46.508 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:19:46.508 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:46.508 -07 000000382 INF: FPGA: Recv ZSGSRD 30703
17-03-17 19:19:46.518 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:46.518 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:46.518 -07 000000627 INF: FPGA: Recv ZSGSRD 30701
17-03-17 19:19:46.528 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:46.528 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:46.528 -07 000000478 INF: FPGA: Recv ZSGSRD 30700
17-03-17 19:19:46.538 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:46.538 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:46.538 -07 000000627 INF: FPGA: Recv ZSGSRD 30699
17-03-17 19:19:46.548 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:46.548 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:46.548 -07 000000478 INF: FPGA: Recv ZSGSRD 30699
17-03-17 19:19:46.558 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:46.558 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:46.558 -07 000000627 INF: FPGA: Recv ZSGSRD 30694
17-03-17 19:19:46.568 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:46.568 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:46.568 -07 000000480 INF: FPGA: Recv ZSGSRD 30701
17-03-17 19:19:46.578 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:46.578 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:46.578 -07 000000627 INF: FPGA: Recv ZSGSRD 30702
17-03-17 19:19:46.588 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:46.588 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:46.588 -07 000000433 INF: FPGA: Recv ZPIEZORD 26695
17-03-17 19:19:46.598 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:46.598 -07 000000476 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.585 V. Piezo Error = -8.8 V.
17-03-17 19:19:46.598 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30701 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30701 (-136.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30694 (-136.7 uncal um), Max = 30705 (-136.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:19:46.598 -07 000000476 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30701, posNoise = 4, negNoise = 7
17-03-17 19:19:46.598 -07 000000476 INF: Z Motor: After move to -0.137537, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:46.598 -07 000000476 INF: Z Motor: Settle wait time = 1442 ms, measure time = 102 ms (allowed 150 ms), total time = 1544 ms
17-03-17 19:19:46.598 -07 000000476 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 19:19:46.648 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 19:19:46.648 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:19:46.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:46.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:46.648 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:46.648 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:46.648 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:19:46.648 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:46.658 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:19:46.658 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:19:46.658 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:19:46.658 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:19:46.658 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:19:46.658 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:19:46.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:19:46.678 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:19:46.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:19:46.708 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:19:46.908 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:19:46.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:19:46.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:19:46.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) start.
17-03-17 19:19:46.948 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:19:46.948 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:19:46.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:19:47.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:19:47.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:47.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:19:47.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:19:47.048 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:47.048 -07 000000480 INF: Autofocus start
17-03-17 19:19:47.048 -07 000000480 INF: MeasureProfile start
17-03-17 19:19:47.048 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:47.058 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:19:47.058 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:19:47.058 -07 000000480 INF: MeasureProfile done
17-03-17 19:19:47.058 -07 000000480 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:19:47.058 -07 000000480 INF: Autofocus finished
17-03-17 19:19:47.258 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:19:47.258 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:19:47.258 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0283203125, Z-position -0.137553088975338. ----------
17-03-17 19:19:47.258 -07 000000610 INF: Cycle	24	Tile	12	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:19:47.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28552, sync = True, waitForSettling = True)
17-03-17 19:19:47.268 -07 000000610 INF: Z Motor: Moving to -0.130703 mm, started at -0.137553 mm, distance = 6.85 um
17-03-17 19:19:47.268 -07 000000610 INF: FPGA: Xmit ZDACW 28552\n [Z Motor]
17-03-17 19:19:47.268 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 19:19:47.278 -07 000000610 INF: FPGA: 'ZDACW 28552' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:19:47.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:47.278 -07 000000623 INF: FPGA: Recv ZDACR 28552
17-03-17 19:19:47.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:47.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:19:47.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:47.438 -07 000000382 INF: FPGA: Recv ZSGSRD 29632
17-03-17 19:19:47.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:47.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:47.448 -07 000000478 INF: FPGA: Recv ZSGSRD 29637
17-03-17 19:19:47.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:47.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:47.458 -07 000000382 INF: FPGA: Recv ZSGSRD 29636
17-03-17 19:19:47.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:47.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:47.468 -07 000000478 INF: FPGA: Recv ZSGSRD 29629
17-03-17 19:19:47.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:47.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:47.478 -07 000000382 INF: FPGA: Recv ZSGSRD 29638
17-03-17 19:19:47.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:47.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:47.488 -07 000000480 INF: FPGA: Recv ZSGSRD 29634
17-03-17 19:19:47.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:47.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:47.498 -07 000000623 INF: FPGA: Recv ZSGSRD 29631
17-03-17 19:19:47.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:47.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:47.508 -07 000000382 INF: FPGA: Recv ZSGSRD 29632
17-03-17 19:19:47.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:47.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:47.518 -07 000000476 INF: FPGA: Recv ZSGSRD 29636
17-03-17 19:19:47.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:47.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:47.528 -07 000000541 INF: FPGA: Recv ZSGSRD 29639
17-03-17 19:19:47.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:47.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:47.538 -07 000000478 INF: FPGA: Recv ZPIEZORD 25319
17-03-17 19:19:47.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:47.548 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.357 V. Piezo Error = -9.5 V.
17-03-17 19:19:47.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29634 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29635 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29629 (-129.9 uncal um), Max = 29639 (-130.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:19:47.548 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29634, posNoise = 5, negNoise = 5
17-03-17 19:19:47.548 -07 000000610 INF: Z Motor: After move to -0.130703, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:47.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:19:47.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:47.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:47.548 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:47.548 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:47.548 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:19:47.548 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:47.548 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:19:47.548 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:19:47.548 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:19:47.548 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:19:47.548 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:19:47.548 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:19:47.558 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:19:47.558 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:19:47.558 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:19:47.558 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:19:47.558 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:19:47.558 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:19:47.568 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:19:47.568 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:19:47.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28729 150\n [Camera]
17-03-17 19:19:47.768 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:19:48.168 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:19:48.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:19:48.168 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:48.168 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:19:48.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:19:48.168 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:48.178 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:48.298 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:48.298 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2201991440, 0x0, 418435064) start.
17-03-17 19:19:48.298 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2166569176, 0x0, 391868352) start.
17-03-17 19:19:48.358 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28729 785
17-03-17 19:19:48.508 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:19:48.688 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2201991440, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:19:48.688 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:19:48.688 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:48.688 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2166569176, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:19:48.688 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 19:19:48.688 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:48.698 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:19:48.698 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:19:48.698 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-17 19:19:48.698 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:19:48.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:19:48.698 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:48.698 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 532 ms.
17-03-17 19:19:48.708 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:19:48.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:19:48.708 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:48.708 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:48.708 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2237413704, 0x0, 418435064) start.
17-03-17 19:19:48.708 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:48.708 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:19:48.888 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:19:48.898 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:19:48.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28729 150' command took 2 ms to send, 1322 ms to get response, and 1329 ms overall
17-03-17 19:19:48.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:19:48.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0283203125, Z-Position -0.130698454620079. ------
17-03-17 19:19:48.898 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:48.898 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13711 mm
17-03-17 19:19:48.898 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:19:48.908 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:48.908 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:19:48.908 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:19:48.908 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:19:48.908 -07 000000382 INF: Y Motor: Moving to 69.8726 mm, started at 69.0283 mm, delta = 0.8443 mm
17-03-17 19:19:48.908 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29952, sync = True, waitForSettling = False)
17-03-17 19:19:48.908 -07 000000541 INF: Z Motor: Moving to -0.137111 mm, started at -0.130698 mm, distance = -6.41 um
17-03-17 19:19:48.918 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:48.918 -07 000000512 INF: FPGA: Recv YRDPOS 141370
17-03-17 19:19:48.928 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:19:48.928 -07 000000382 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:48.928 -07 000000382 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:19:48.928 -07 000000382 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:19:48.928 -07 000000541 INF: FPGA: Xmit ZDACW 29952\n [Z Motor]
17-03-17 19:19:48.928 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 19:19:48.938 -07 000000541 INF: FPGA: 'ZDACW 29952' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:19:48.938 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:48.938 -07 000000476 INF: FPGA: Recv ZDACR 29952
17-03-17 19:19:48.948 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:19:48.948 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:48.948 -07 000000541 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 19:19:49.108 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:19:49.108 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:19:49.108 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:49.108 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:19:49.108 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-17 19:19:49.108 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2237413704, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 19:19:49.108 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:19:49.108 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:49.108 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:49.108 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:19:49.118 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:49.118 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:19:49.318 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 19:19:49.318 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:19:49.358 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:49.358 -07 000000478 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:19:49.368 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:19:49.368 -07 000000382 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:49.368 -07 000000382 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:19:49.368 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-17 19:19:49.388 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.981281,
17-03-17 19:19:50.318 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:50.318 -07 000000626 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:19:50.328 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:50.328 -07 000000382 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:50.348 -07 000000382 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:19:50.348 -07 000000382 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:19:50.348 -07 000000382 INF: Y Motor: Moved to 69.8643 after 1438 ms (table move)
17-03-17 19:19:50.348 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137111 mm (DAC = 29952)
17-03-17 19:19:50.348 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:50.348 -07 000000476 INF: FPGA: Recv ZSGSRD 30637
17-03-17 19:19:50.358 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:19:50.358 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:50.358 -07 000000424 INF: FPGA: Recv ZSGSRD 30630
17-03-17 19:19:50.368 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:50.368 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:50.368 -07 000000433 INF: FPGA: Recv ZSGSRD 30633
17-03-17 19:19:50.378 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:50.378 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:50.378 -07 000000424 INF: FPGA: Recv ZSGSRD 30636
17-03-17 19:19:50.388 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:50.388 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:50.388 -07 000000475 INF: FPGA: Recv ZSGSRD 30630
17-03-17 19:19:50.398 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:50.398 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:50.398 -07 000000433 INF: FPGA: Recv ZSGSRD 30637
17-03-17 19:19:50.408 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:50.408 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:50.408 -07 000000475 INF: FPGA: Recv ZSGSRD 30628
17-03-17 19:19:50.418 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:50.418 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:50.418 -07 000000433 INF: FPGA: Recv ZSGSRD 30625
17-03-17 19:19:50.428 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:50.428 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:50.428 -07 000000475 INF: FPGA: Recv ZSGSRD 30634
17-03-17 19:19:50.438 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:50.438 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:50.438 -07 000000433 INF: FPGA: Recv ZSGSRD 30633
17-03-17 19:19:50.448 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:50.448 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:50.448 -07 000000475 INF: FPGA: Recv ZPIEZORD 26627
17-03-17 19:19:50.458 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:50.458 -07 000000627 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.570 V. Piezo Error = -8.8 V.
17-03-17 19:19:50.458 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30632 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30633 (-136.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30625 (-136.3 uncal um), Max = 30637 (-136.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:19:50.458 -07 000000627 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30632, posNoise = 5, negNoise = 7
17-03-17 19:19:50.458 -07 000000627 INF: Z Motor: After move to -0.137111, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:50.458 -07 000000627 INF: Z Motor: Settle wait time = 1441 ms, measure time = 107 ms (allowed 150 ms), total time = 1548 ms
17-03-17 19:19:50.458 -07 000000627 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:19:50.508 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 19:19:50.508 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:19:50.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:50.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:50.508 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:50.508 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:50.508 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:19:50.508 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:50.508 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:19:50.508 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:19:50.518 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:19:50.518 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:19:50.528 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:19:50.528 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:19:50.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:19:50.578 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:19:50.778 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:19:50.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:19:50.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:19:50.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) start.
17-03-17 19:19:50.818 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:19:50.818 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 19:19:50.818 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 19:19:50.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:19:50.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:50.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:19:50.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:19:50.918 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:50.918 -07 000000475 INF: Autofocus start
17-03-17 19:19:50.918 -07 000000475 INF: MeasureProfile start
17-03-17 19:19:50.918 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:50.928 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:19:50.928 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:19:50.928 -07 000000475 INF: MeasureProfile done
17-03-17 19:19:50.928 -07 000000475 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:19:50.928 -07 000000475 INF: Autofocus finished
17-03-17 19:19:51.128 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:19:51.128 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:19:51.128 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.137109818337557. ----------
17-03-17 19:19:51.128 -07 000000610 INF: Cycle	24	Tile	13	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:19:51.138 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28447, sync = True, waitForSettling = True)
17-03-17 19:19:51.138 -07 000000610 INF: Z Motor: Moving to -0.130222 mm, started at -0.137110 mm, distance = 6.89 um
17-03-17 19:19:51.138 -07 000000610 INF: FPGA: Xmit ZDACW 28447\n [Z Motor]
17-03-17 19:19:51.138 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:19:51.148 -07 000000610 INF: FPGA: 'ZDACW 28447' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:51.148 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:51.148 -07 000000626 INF: FPGA: Recv ZDACR 28447
17-03-17 19:19:51.158 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:51.158 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:19:51.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:51.308 -07 000000482 INF: FPGA: Recv ZSGSRD 29562
17-03-17 19:19:51.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:51.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:51.318 -07 000000627 INF: FPGA: Recv ZSGSRD 29561
17-03-17 19:19:51.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:51.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:51.328 -07 000000476 INF: FPGA: Recv ZSGSRD 29568
17-03-17 19:19:51.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:51.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:51.338 -07 000000482 INF: FPGA: Recv ZSGSRD 29560
17-03-17 19:19:51.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:51.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:51.348 -07 000000433 INF: FPGA: Recv ZSGSRD 29557
17-03-17 19:19:51.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:51.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:51.358 -07 000000482 INF: FPGA: Recv ZSGSRD 29565
17-03-17 19:19:51.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:51.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:51.368 -07 000000627 INF: FPGA: Recv ZSGSRD 29553
17-03-17 19:19:51.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:51.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:51.378 -07 000000382 INF: FPGA: Recv ZSGSRD 29565
17-03-17 19:19:51.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:51.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:51.388 -07 000000424 INF: FPGA: Recv ZSGSRD 29559
17-03-17 19:19:51.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:51.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:51.398 -07 000000626 INF: FPGA: Recv ZSGSRD 29565
17-03-17 19:19:51.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:51.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:51.408 -07 000000475 INF: FPGA: Recv ZPIEZORD 25246
17-03-17 19:19:51.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:51.418 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.341 V. Piezo Error = -9.5 V.
17-03-17 19:19:51.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29562 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29562 (-129.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29553 (-129.4 uncal um), Max = 29568 (-129.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:19:51.418 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29562, posNoise = 6, negNoise = 9
17-03-17 19:19:51.418 -07 000000610 INF: Z Motor: After move to -0.130222, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:51.418 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:19:51.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:51.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:51.418 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:51.418 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:51.418 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:19:51.418 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:19:51.418 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:19:51.418 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:51.418 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:19:51.418 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:19:51.418 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:19:51.418 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:19:51.418 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:19:51.418 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:19:51.428 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:19:51.428 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:19:51.428 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:19:51.428 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:19:51.428 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:19:51.428 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:19:51.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28623 150\n [Camera]
17-03-17 19:19:51.638 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:19:51.678 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:19:51.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:19:52.038 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:19:52.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:19:52.038 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:52.038 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:52.038 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:19:52.038 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:19:52.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:19:52.038 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:52.038 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:52.038 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:19:52.228 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28623 785
17-03-17 19:19:52.378 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:19:52.418 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:19:52.418 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:19:52.418 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:52.418 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:19:52.418 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:19:52.418 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:52.428 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:19:52.428 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:19:52.428 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:19:52.438 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:19:52.568 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:19:52.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:19:52.568 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:52.568 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:52.568 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:19:52.568 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:19:52.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:19:52.578 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:52.578 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:52.578 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:19:52.758 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-17 19:19:52.758 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:19:52.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28623 150' command took 2 ms to send, 1318 ms to get response, and 1326 ms overall
17-03-17 19:19:52.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:19:52.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8642578125, Z-Position -0.130235911345872. ------
17-03-17 19:19:52.768 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:52.768 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13657 mm
17-03-17 19:19:52.768 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:19:52.768 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:52.778 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:19:52.778 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:19:52.778 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:19:52.778 -07 000000433 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 19:19:52.778 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 29833, sync = True, waitForSettling = False)
17-03-17 19:19:52.778 -07 000000482 INF: Z Motor: Moving to -0.136567 mm, started at -0.130236 mm, distance = -6.33 um
17-03-17 19:19:52.788 -07 000000482 INF: FPGA: Xmit ZDACW 29833\n [Z Motor]
17-03-17 19:19:52.788 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:19:52.798 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:52.798 -07 000000482 INF: FPGA: 'ZDACW 29833' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:19:52.798 -07 000000429 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:19:52.808 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:19:52.808 -07 000000433 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:52.808 -07 000000433 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:19:52.808 -07 000000433 INF: Y Motor: Moving 1341 steps-18
17-03-17 19:19:52.808 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:52.808 -07 000000475 INF: FPGA: Recv ZDACR 29833
17-03-17 19:19:52.818 -07 000000482 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:19:52.818 -07 000000482 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 19:19:52.818 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:19:52.948 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:19:52.948 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:19:52.948 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:52.948 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:19:52.948 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:19:52.958 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:52.958 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:52.958 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:19:52.958 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:19:52.968 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:19:52.978 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:19:52.978 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:19:53.188 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:19:53.188 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:19:53.228 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:53.228 -07 000000476 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:19:53.238 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:19:53.238 -07 000000433 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:53.238 -07 000000433 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:19:53.238 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.161 mm/sec
17-03-17 19:19:54.188 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:54.188 -07 000000431 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:19:54.198 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:54.198 -07 000000433 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:54.218 -07 000000433 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:19:54.218 -07 000000433 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:19:54.218 -07 000000433 INF: Y Motor: Moved to 70.6895 after 1440 ms (table move)
17-03-17 19:19:54.218 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136567 mm (DAC = 29833)
17-03-17 19:19:54.218 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:54.218 -07 000000429 INF: FPGA: Recv ZSGSRD 30555
17-03-17 19:19:54.228 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:19:54.228 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:54.228 -07 000000429 INF: FPGA: Recv ZSGSRD 30542
17-03-17 19:19:54.238 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:54.238 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:54.238 -07 000000429 INF: FPGA: Recv ZSGSRD 30545
17-03-17 19:19:54.248 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:54.248 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:54.248 -07 000000475 INF: FPGA: Recv ZSGSRD 30547
17-03-17 19:19:54.258 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:54.258 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:54.258 -07 000000431 INF: FPGA: Recv ZSGSRD 30553
17-03-17 19:19:54.268 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:19:54.268 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:54.268 -07 000000433 INF: FPGA: Recv ZSGSRD 30552
17-03-17 19:19:54.278 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:54.278 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:54.278 -07 000000424 INF: FPGA: Recv ZSGSRD 30546
17-03-17 19:19:54.288 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:54.288 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:54.288 -07 000000433 INF: FPGA: Recv ZSGSRD 30547
17-03-17 19:19:54.298 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:54.298 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:54.298 -07 000000433 INF: FPGA: Recv ZSGSRD 30553
17-03-17 19:19:54.308 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:54.308 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:54.308 -07 000000424 INF: FPGA: Recv ZSGSRD 30548
17-03-17 19:19:54.318 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:54.318 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:54.318 -07 000000424 INF: FPGA: Recv ZPIEZORD 26538
17-03-17 19:19:54.328 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:54.328 -07 000000626 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.552 V. Piezo Error = -8.8 V.
17-03-17 19:19:54.328 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30549 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30548 (-135.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30542 (-135.7 uncal um), Max = 30555 (-135.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:19:54.328 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30549, posNoise = 6, negNoise = 7
17-03-17 19:19:54.328 -07 000000626 INF: Z Motor: After move to -0.136567, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:54.328 -07 000000626 INF: Z Motor: Settle wait time = 1442 ms, measure time = 106 ms (allowed 150 ms), total time = 1548 ms
17-03-17 19:19:54.328 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:19:54.378 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 19:19:54.378 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:19:54.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:54.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:54.378 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:54.378 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:54.378 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:19:54.378 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:54.378 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:19:54.378 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:19:54.388 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:19:54.388 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:19:54.398 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:19:54.398 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-17 19:19:54.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:19:54.448 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:19:54.648 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:19:54.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:19:54.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:19:54.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 19:19:54.688 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:19:54.688 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:19:54.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 19:19:54.748 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.975845,
17-03-17 19:19:54.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:19:54.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:54.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:19:54.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:19:54.788 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:54.788 -07 000000475 INF: Autofocus start
17-03-17 19:19:54.788 -07 000000475 INF: MeasureProfile start
17-03-17 19:19:54.788 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:54.798 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:19:54.798 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:19:54.798 -07 000000475 INF: MeasureProfile done
17-03-17 19:19:54.798 -07 000000475 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:19:54.798 -07 000000475 INF: Autofocus finished
17-03-17 19:19:54.998 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:19:54.998 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 19:19:54.998 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.13657660872979. ----------
17-03-17 19:19:54.998 -07 000000610 INF: Cycle	24	Tile	14	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:19:55.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28358, sync = True, waitForSettling = True)
17-03-17 19:19:55.008 -07 000000610 INF: Z Motor: Moving to -0.129815 mm, started at -0.136577 mm, distance = 6.76 um
17-03-17 19:19:55.008 -07 000000610 INF: FPGA: Xmit ZDACW 28358\n [Z Motor]
17-03-17 19:19:55.008 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 19:19:55.018 -07 000000610 INF: FPGA: 'ZDACW 28358' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:19:55.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:55.018 -07 000000626 INF: FPGA: Recv ZDACR 28358
17-03-17 19:19:55.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:55.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:19:55.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:55.178 -07 000000627 INF: FPGA: Recv ZSGSRD 29495
17-03-17 19:19:55.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:55.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:55.188 -07 000000482 INF: FPGA: Recv ZSGSRD 29496
17-03-17 19:19:55.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:55.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:55.198 -07 000000424 INF: FPGA: Recv ZSGSRD 29496
17-03-17 19:19:55.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:55.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:55.208 -07 000000438 INF: FPGA: Recv ZSGSRD 29495
17-03-17 19:19:55.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:55.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:55.218 -07 000000626 INF: FPGA: Recv ZSGSRD 29496
17-03-17 19:19:55.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:55.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:55.228 -07 000000627 INF: FPGA: Recv ZSGSRD 29498
17-03-17 19:19:55.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:55.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:55.238 -07 000000433 INF: FPGA: Recv ZSGSRD 29497
17-03-17 19:19:55.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:55.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:55.248 -07 000000431 INF: FPGA: Recv ZSGSRD 29499
17-03-17 19:19:55.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:55.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:55.258 -07 000000482 INF: FPGA: Recv ZSGSRD 29493
17-03-17 19:19:55.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:55.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:55.268 -07 000000431 INF: FPGA: Recv ZSGSRD 29498
17-03-17 19:19:55.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:55.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:55.278 -07 000000424 INF: FPGA: Recv ZPIEZORD 25174
17-03-17 19:19:55.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:55.288 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -9.5 V.
17-03-17 19:19:55.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29496 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29496 (-129.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29493 (-129.0 uncal um), Max = 29499 (-129.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:19:55.288 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29496, posNoise = 3, negNoise = 3
17-03-17 19:19:55.288 -07 000000610 INF: Z Motor: After move to -0.129815, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:55.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:19:55.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:55.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:55.288 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:55.288 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:55.288 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:19:55.288 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:55.288 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:19:55.288 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:19:55.288 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:19:55.288 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:19:55.288 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:19:55.288 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:19:55.298 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:19:55.298 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:19:55.298 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:19:55.298 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:19:55.308 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:19:55.308 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:19:55.308 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:19:55.308 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:19:55.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28534 150\n [Camera]
17-03-17 19:19:55.508 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:19:55.908 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:19:55.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:19:55.908 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:55.908 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:55.908 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2321533088, 0x0, 391868352) start.
17-03-17 19:19:55.908 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:19:55.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:19:55.908 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:55.908 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:55.908 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2356955352, 0x0, 418435064) start.
17-03-17 19:19:56.098 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28534 785
17-03-17 19:19:56.248 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:19:56.288 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2321533088, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:19:56.288 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:19:56.288 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:56.288 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2356955352, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:19:56.288 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:19:56.288 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:56.288 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:56.298 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:19:56.298 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:56.298 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:19:56.438 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:19:56.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:19:56.448 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:56.448 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:56.448 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:19:56.448 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:19:56.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:19:56.448 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:56.448 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:56.448 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 19:19:56.638 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:19:56.638 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:19:56.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28534 150' command took 2 ms to send, 1320 ms to get response, and 1326 ms overall
17-03-17 19:19:56.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:19:56.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.689453125, Z-Position -0.129811913344516. ------
17-03-17 19:19:56.638 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:56.638 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13648 mm
17-03-17 19:19:56.638 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:19:56.638 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:19:56.638 -07 000000482 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-17 19:19:56.638 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:56.638 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29815, sync = True, waitForSettling = False)
17-03-17 19:19:56.638 -07 000000627 INF: Z Motor: Moving to -0.136484 mm, started at -0.129812 mm, distance = -6.67 um
17-03-17 19:19:56.648 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:19:56.648 -07 000000627 INF: FPGA: Xmit ZDACW 29815\n [Z Motor]
17-03-17 19:19:56.648 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:19:56.658 -07 000000627 INF: FPGA: 'ZDACW 29815' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:56.658 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:56.658 -07 000000551 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:19:56.668 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:19:56.668 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:19:56.668 -07 000000482 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:56.668 -07 000000482 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:19:56.668 -07 000000482 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:19:56.678 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:56.678 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:19:56.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:19:56.678 -07 000000551 INF: FPGA: Recv ZDACR 29815
17-03-17 19:19:56.688 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:19:56.688 -07 000000627 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 19:19:56.688 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:19:56.848 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 19:19:56.848 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:19:56.848 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:56.848 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:19:56.848 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:19:56.848 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:56.848 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:19:56.858 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:19:56.858 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 19:19:56.858 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:19:56.868 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:19:56.868 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:19:57.058 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:19:57.058 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:19:57.098 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:57.098 -07 000000424 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:19:57.108 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:19:57.108 -07 000000482 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:57.108 -07 000000482 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:19:57.108 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.118 mm/sec
17-03-17 19:19:58.058 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:19:58.058 -07 000000438 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:19:58.068 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:58.068 -07 000000482 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:19:58.088 -07 000000482 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:19:58.088 -07 000000482 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:19:58.088 -07 000000482 INF: Y Motor: Moved to 71.5200 after 1443 ms (table move)
17-03-17 19:19:58.088 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136484 mm (DAC = 29815)
17-03-17 19:19:58.088 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:58.098 -07 000000424 INF: FPGA: Recv ZSGSRD 30547
17-03-17 19:19:58.098 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:19:58.098 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:58.098 -07 000000501 INF: FPGA: Recv ZSGSRD 30538
17-03-17 19:19:58.108 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:58.108 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:58.108 -07 000000482 INF: FPGA: Recv ZSGSRD 30533
17-03-17 19:19:58.118 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:58.118 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:58.118 -07 000000424 INF: FPGA: Recv ZSGSRD 30535
17-03-17 19:19:58.128 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:58.128 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:58.128 -07 000000501 INF: FPGA: Recv ZSGSRD 30535
17-03-17 19:19:58.138 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:58.138 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:58.138 -07 000000482 INF: FPGA: Recv ZSGSRD 30542
17-03-17 19:19:58.148 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:58.148 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:58.148 -07 000000424 INF: FPGA: Recv ZSGSRD 30541
17-03-17 19:19:58.158 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:58.158 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:58.158 -07 000000482 INF: FPGA: Recv ZSGSRD 30536
17-03-17 19:19:58.168 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:58.168 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:58.168 -07 000000501 INF: FPGA: Recv ZSGSRD 30530
17-03-17 19:19:58.178 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:58.178 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:58.178 -07 000000424 INF: FPGA: Recv ZSGSRD 30534
17-03-17 19:19:58.188 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:58.188 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:58.188 -07 000000501 INF: FPGA: Recv ZPIEZORD 26554
17-03-17 19:19:58.198 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:58.198 -07 000000475 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.549 V. Piezo Error = -8.8 V.
17-03-17 19:19:58.198 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30537 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30536 (-135.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30530 (-135.7 uncal um), Max = 30547 (-135.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:19:58.198 -07 000000475 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30537, posNoise = 10, negNoise = 7
17-03-17 19:19:58.198 -07 000000475 INF: Z Motor: After move to -0.136484, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:58.198 -07 000000475 INF: Z Motor: Settle wait time = 1447 ms, measure time = 103 ms (allowed 150 ms), total time = 1550 ms
17-03-17 19:19:58.198 -07 000000475 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:19:58.248 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 19:19:58.248 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:19:58.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:58.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:58.248 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:58.248 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:19:58.248 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:58.248 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:58.248 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:19:58.248 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:19:58.258 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:19:58.258 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:19:58.258 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:19:58.258 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:19:58.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:19:58.308 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:19:58.508 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:19:58.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:19:58.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:19:58.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) start.
17-03-17 19:19:58.548 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:19:58.548 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 19:19:58.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:19:58.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 19:19:58.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:19:58.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:19:58.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:19:58.648 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:19:58.648 -07 000000486 INF: Autofocus start
17-03-17 19:19:58.648 -07 000000486 INF: MeasureProfile start
17-03-17 19:19:58.648 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:19:58.658 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:19:58.658 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:19:58.658 -07 000000486 INF: MeasureProfile done
17-03-17 19:19:58.658 -07 000000486 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:19:58.658 -07 000000486 INF: Autofocus finished
17-03-17 19:19:58.858 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:19:58.858 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:19:58.858 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.136499518184089. ----------
17-03-17 19:19:58.858 -07 000000610 INF: Cycle	24	Tile	15	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:19:58.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28322, sync = True, waitForSettling = True)
17-03-17 19:19:58.868 -07 000000610 INF: Z Motor: Moving to -0.129650 mm, started at -0.136500 mm, distance = 6.85 um
17-03-17 19:19:58.868 -07 000000610 INF: FPGA: Xmit ZDACW 28322\n [Z Motor]
17-03-17 19:19:58.868 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:19:58.878 -07 000000610 INF: FPGA: 'ZDACW 28322' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:19:58.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:19:58.878 -07 000000478 INF: FPGA: Recv ZDACR 28322
17-03-17 19:19:58.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:58.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:19:59.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:59.038 -07 000000438 INF: FPGA: Recv ZSGSRD 29469
17-03-17 19:19:59.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:19:59.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:59.048 -07 000000433 INF: FPGA: Recv ZSGSRD 29471
17-03-17 19:19:59.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:59.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:59.058 -07 000000627 INF: FPGA: Recv ZSGSRD 29467
17-03-17 19:19:59.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:59.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:59.068 -07 000000478 INF: FPGA: Recv ZSGSRD 29469
17-03-17 19:19:59.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:59.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:59.078 -07 000000475 INF: FPGA: Recv ZSGSRD 29480
17-03-17 19:19:59.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:59.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:59.088 -07 000000433 INF: FPGA: Recv ZSGSRD 29475
17-03-17 19:19:59.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:59.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:59.098 -07 000000627 INF: FPGA: Recv ZSGSRD 29466
17-03-17 19:19:59.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:59.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:59.108 -07 000000424 INF: FPGA: Recv ZSGSRD 29469
17-03-17 19:19:59.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:59.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:59.118 -07 000000541 INF: FPGA: Recv ZSGSRD 29471
17-03-17 19:19:59.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:59.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:19:59.128 -07 000000551 INF: FPGA: Recv ZSGSRD 29470
17-03-17 19:19:59.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:59.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:19:59.138 -07 000000486 INF: FPGA: Recv ZPIEZORD 25110
17-03-17 19:19:59.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:19:59.148 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -9.6 V.
17-03-17 19:19:59.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29471 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29470 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29466 (-128.8 uncal um), Max = 29480 (-128.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:19:59.148 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29471, posNoise = 9, negNoise = 5
17-03-17 19:19:59.148 -07 000000610 INF: Z Motor: After move to -0.129650, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:19:59.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:19:59.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:19:59.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:19:59.148 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:19:59.148 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:19:59.148 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:19:59.148 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:19:59.148 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:19:59.148 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:19:59.148 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:19:59.148 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:19:59.148 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:19:59.148 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:19:59.158 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:19:59.158 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:19:59.158 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:19:59.158 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:19:59.168 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 19:19:59.168 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:19:59.168 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 19:19:59.168 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:19:59.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28499 150\n [Camera]
17-03-17 19:19:59.368 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:19:59.768 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:19:59.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:19:59.768 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:19:59.768 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:19:59.768 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2501443856, 0x0, 391868352) start.
17-03-17 19:19:59.778 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:19:59.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:19:59.778 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:19:59.778 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:19:59.778 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:19:59.968 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28499 785
17-03-17 19:20:00.108 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.958108,
17-03-17 19:20:00.108 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:20:00.168 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2501443856, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:20:00.168 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:20:00.168 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:00.178 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:20:00.178 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:20:00.178 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:20:00.178 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:20:00.178 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:00.178 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:20:00.188 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 19:20:00.308 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:20:00.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:20:00.308 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:20:00.308 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:20:00.308 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 19:20:00.308 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:20:00.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:20:00.308 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:20:00.308 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:20:00.308 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) start.
17-03-17 19:20:00.498 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:20:00.498 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:20:00.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28499 150' command took 2 ms to send, 1317 ms to get response, and 1330 ms overall
17-03-17 19:20:00.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:20:00.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52001953125, Z-Position -0.129651308040972. ------
17-03-17 19:20:00.508 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13567 mm
17-03-17 19:20:00.508 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:20:00.508 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:20:00.508 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:20:00.508 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29636, sync = True, waitForSettling = False)
17-03-17 19:20:00.508 -07 000000626 INF: Z Motor: Moving to -0.135665 mm, started at -0.129651 mm, distance = -6.01 um
17-03-17 19:20:00.508 -07 000000623 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 19:20:00.508 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:20:00.518 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:20:00.518 -07 000000626 INF: FPGA: Xmit ZDACW 29636\n [Z Motor]
17-03-17 19:20:00.518 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:20:00.528 -07 000000626 INF: FPGA: 'ZDACW 29636' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:20:00.528 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:20:00.528 -07 000000627 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:20:00.538 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:20:00.538 -07 000000623 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:20:00.538 -07 000000623 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:20:00.538 -07 000000623 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:20:00.538 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:20:00.548 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:20:00.548 -07 000000486 INF: FPGA: Recv ZDACR 29636
17-03-17 19:20:00.558 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:20:00.558 -07 000000626 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 19:20:00.558 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:20:00.708 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:20:00.708 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:20:00.708 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:00.708 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:20:00.708 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:20:00.708 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:00.718 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:20:00.718 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:20:00.718 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 19:20:00.718 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:20:00.738 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:20:00.738 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 19:20:00.928 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 19:20:00.928 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:20:00.968 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:20:00.968 -07 000000433 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:20:00.978 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:20:00.978 -07 000000623 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:20:00.978 -07 000000623 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:20:00.978 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 19:20:01.678 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:20:01.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:20:01.928 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:20:01.928 -07 000000433 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:20:01.938 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:01.938 -07 000000623 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:20:01.958 -07 000000623 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:20:01.958 -07 000000623 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:20:01.958 -07 000000623 INF: Y Motor: Moved to 72.3501 after 1444 ms (table move)
17-03-17 19:20:01.958 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135665 mm (DAC = 29636)
17-03-17 19:20:01.958 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:01.958 -07 000000478 INF: FPGA: Recv ZSGSRD 30404
17-03-17 19:20:01.968 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:20:01.968 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:01.968 -07 000000433 INF: FPGA: Recv ZSGSRD 30398
17-03-17 19:20:01.978 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:01.978 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:01.978 -07 000000478 INF: FPGA: Recv ZSGSRD 30410
17-03-17 19:20:01.988 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:01.988 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:01.988 -07 000000486 INF: FPGA: Recv ZSGSRD 30410
17-03-17 19:20:01.998 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:01.998 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:01.998 -07 000000433 INF: FPGA: Recv ZSGSRD 30409
17-03-17 19:20:02.008 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:02.008 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:02.008 -07 000000486 INF: FPGA: Recv ZSGSRD 30413
17-03-17 19:20:02.018 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:02.018 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:02.018 -07 000000626 INF: FPGA: Recv ZSGSRD 30411
17-03-17 19:20:02.028 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:02.028 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:02.028 -07 000000478 INF: FPGA: Recv ZSGSRD 30415
17-03-17 19:20:02.038 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:02.038 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:02.038 -07 000000627 INF: FPGA: Recv ZSGSRD 30408
17-03-17 19:20:02.048 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:02.048 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:02.048 -07 000000433 INF: FPGA: Recv ZSGSRD 30410
17-03-17 19:20:02.058 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:02.058 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:20:02.058 -07 000000486 INF: FPGA: Recv ZPIEZORD 26440
17-03-17 19:20:02.068 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:02.068 -07 000000551 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.522 V. Piezo Error = -8.7 V.
17-03-17 19:20:02.068 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30409 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30410 (-134.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30398 (-134.8 uncal um), Max = 30415 (-134.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 19:20:02.068 -07 000000551 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30409, posNoise = 6, negNoise = 11
17-03-17 19:20:02.068 -07 000000551 INF: Z Motor: After move to -0.135665, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:20:02.068 -07 000000551 INF: Z Motor: Settle wait time = 1447 ms, measure time = 106 ms (allowed 150 ms), total time = 1553 ms
17-03-17 19:20:02.068 -07 000000551 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:20:02.118 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 19:20:02.118 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:20:02.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:20:02.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:20:02.118 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:20:02.118 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:20:02.118 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:20:02.118 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:20:02.118 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:20:02.118 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:20:02.128 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:20:02.128 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:20:02.138 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:20:02.138 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:20:02.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:20:02.188 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:20:02.388 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:20:02.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:20:02.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:20:02.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2536866120, 0x0, 559484976) start.
17-03-17 19:20:02.428 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:20:02.428 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 19:20:02.428 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 19:20:02.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2536866120, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 19:20:02.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:02.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:20:02.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:20:02.528 -07 000000433 INF: Autofocus start
17-03-17 19:20:02.528 -07 000000433 INF: MeasureProfile start
17-03-17 19:20:02.528 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:20:02.528 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:20:02.538 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:20:02.538 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:20:02.538 -07 000000433 INF: MeasureProfile done
17-03-17 19:20:02.538 -07 000000433 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:20:02.538 -07 000000433 INF: Autofocus finished
17-03-17 19:20:02.738 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:20:02.738 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:20:02.738 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135677219029944. ----------
17-03-17 19:20:02.738 -07 000000610 INF: Cycle	24	Tile	16	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:20:02.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28144, sync = True, waitForSettling = True)
17-03-17 19:20:02.748 -07 000000610 INF: Z Motor: Moving to -0.128835 mm, started at -0.135677 mm, distance = 6.84 um
17-03-17 19:20:02.748 -07 000000610 INF: FPGA: Xmit ZDACW 28144\n [Z Motor]
17-03-17 19:20:02.748 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:20:02.758 -07 000000610 INF: FPGA: 'ZDACW 28144' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:02.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:20:02.758 -07 000000478 INF: FPGA: Recv ZDACR 28144
17-03-17 19:20:02.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:02.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:20:02.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:02.918 -07 000000482 INF: FPGA: Recv ZSGSRD 29347
17-03-17 19:20:02.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:20:02.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:02.928 -07 000000478 INF: FPGA: Recv ZSGSRD 29340
17-03-17 19:20:02.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:02.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:02.938 -07 000000623 INF: FPGA: Recv ZSGSRD 29345
17-03-17 19:20:02.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:02.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:02.948 -07 000000551 INF: FPGA: Recv ZSGSRD 29344
17-03-17 19:20:02.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:02.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:02.958 -07 000000627 INF: FPGA: Recv ZSGSRD 29346
17-03-17 19:20:02.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:02.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:02.968 -07 000000433 INF: FPGA: Recv ZSGSRD 29343
17-03-17 19:20:02.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:20:02.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:02.978 -07 000000551 INF: FPGA: Recv ZSGSRD 29343
17-03-17 19:20:02.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:02.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:02.988 -07 000000626 INF: FPGA: Recv ZSGSRD 29352
17-03-17 19:20:02.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:02.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:02.998 -07 000000623 INF: FPGA: Recv ZSGSRD 29339
17-03-17 19:20:03.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:03.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:03.008 -07 000000627 INF: FPGA: Recv ZSGSRD 29341
17-03-17 19:20:03.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:03.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:20:03.018 -07 000000482 INF: FPGA: Recv ZPIEZORD 24998
17-03-17 19:20:03.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:03.028 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.294 V. Piezo Error = -9.5 V.
17-03-17 19:20:03.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29344 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29344 (-128.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29339 (-128.0 uncal um), Max = 29352 (-128.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:20:03.028 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29344, posNoise = 8, negNoise = 5
17-03-17 19:20:03.028 -07 000000610 INF: Z Motor: After move to -0.128835, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:20:03.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:20:03.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:20:03.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:20:03.028 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:20:03.028 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:20:03.028 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:20:03.028 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:20:03.028 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:20:03.028 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:20:03.028 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:20:03.028 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:20:03.028 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:20:03.028 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:20:03.038 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:20:03.038 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:20:03.038 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:20:03.038 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:20:03.048 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:20:03.048 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:20:03.048 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:20:03.048 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:20:03.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28320 150\n [Camera]
17-03-17 19:20:03.248 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:20:03.648 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:20:03.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:20:03.648 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:20:03.648 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:20:03.648 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 19:20:03.648 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:20:03.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:20:03.648 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:20:03.648 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:20:03.648 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 19:20:03.838 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28320 785
17-03-17 19:20:03.988 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:20:04.028 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:20:04.028 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:20:04.028 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:04.028 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:20:04.028 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:20:04.028 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:04.028 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:20:04.028 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:20:04.028 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:20:04.038 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:20:04.188 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:20:04.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:20:04.188 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:20:04.318 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:20:04.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:20:04.318 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:20:04.318 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:20:04.318 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 19:20:04.318 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:20:04.318 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:20:04.378 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:20:04.378 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:20:04.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28320 150' command took 2 ms to send, 1322 ms to get response, and 1327 ms overall
17-03-17 19:20:04.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:20:04.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128835433098969. ------
17-03-17 19:20:04.378 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:20:04.378 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13540 mm
17-03-17 19:20:04.378 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:20:04.378 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:20:04.378 -07 000000623 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 19:20:04.388 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 29578, sync = True, waitForSettling = False)
17-03-17 19:20:04.388 -07 000000593 INF: Z Motor: Moving to -0.135399 mm, started at -0.128835 mm, distance = -6.56 um
17-03-17 19:20:04.388 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:20:04.388 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:20:04.388 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:20:04.388 -07 000000626 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:20:04.398 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:20:04.398 -07 000000623 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:20:04.398 -07 000000623 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:20:04.398 -07 000000623 INF: Y Motor: Moving 1348 steps-26
17-03-17 19:20:04.398 -07 000000593 INF: FPGA: Xmit ZDACW 29578\n [Z Motor]
17-03-17 19:20:04.398 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:20:04.408 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:20:04.408 -07 000000593 INF: FPGA: 'ZDACW 29578' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:20:04.418 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:20:04.428 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:20:04.428 -07 000000478 INF: FPGA: Recv ZDACR 29578
17-03-17 19:20:04.438 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:20:04.438 -07 000000593 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 19:20:04.608 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:20:04.608 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 19:20:04.718 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 19:20:04.718 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:20:04.718 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:04.718 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:20:04.718 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:20:04.718 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:04.718 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:20:04.718 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:20:04.718 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 537 ms.
17-03-17 19:20:04.728 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:20:04.798 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 19:20:04.798 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 19:20:04.828 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:20:04.828 -07 000000433 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:20:04.838 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:20:04.838 -07 000000623 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:20:04.838 -07 000000623 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 19:20:04.838 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.843 mm, average velocity = 2.112 mm/sec
17-03-17 19:20:05.468 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.970374,
17-03-17 19:20:05.788 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:20:05.788 -07 000000593 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:20:05.798 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:20:05.798 -07 000000623 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:20:05.818 -07 000000623 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:20:05.818 -07 000000623 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:20:05.818 -07 000000623 INF: Y Motor: Moved to 73.1768 after 1431 ms (table move)
17-03-17 19:20:05.818 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135399 mm (DAC = 29578)
17-03-17 19:20:05.818 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:05.818 -07 000000382 INF: FPGA: Recv ZSGSRD 30373
17-03-17 19:20:05.828 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:20:05.828 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:05.828 -07 000000623 INF: FPGA: Recv ZSGSRD 30360
17-03-17 19:20:05.838 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:05.838 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:05.838 -07 000000512 INF: FPGA: Recv ZSGSRD 30363
17-03-17 19:20:05.848 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:05.848 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:05.848 -07 000000627 INF: FPGA: Recv ZSGSRD 30364
17-03-17 19:20:05.858 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:05.858 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:05.858 -07 000000512 INF: FPGA: Recv ZSGSRD 30375
17-03-17 19:20:05.868 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:05.868 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:05.868 -07 000000382 INF: FPGA: Recv ZSGSRD 30373
17-03-17 19:20:05.878 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:05.878 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:05.878 -07 000000429 INF: FPGA: Recv ZSGSRD 30369
17-03-17 19:20:05.888 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:05.888 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:05.888 -07 000000627 INF: FPGA: Recv ZSGSRD 30371
17-03-17 19:20:05.898 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:05.898 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:05.898 -07 000000429 INF: FPGA: Recv ZSGSRD 30364
17-03-17 19:20:05.908 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:05.908 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:05.908 -07 000000382 INF: FPGA: Recv ZSGSRD 30366
17-03-17 19:20:05.918 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:05.918 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:20:05.918 -07 000000429 INF: FPGA: Recv ZPIEZORD 26371
17-03-17 19:20:05.928 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:05.928 -07 000000551 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -8.8 V.
17-03-17 19:20:05.928 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30368 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30368 (-134.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30360 (-134.6 uncal um), Max = 30375 (-134.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:20:05.928 -07 000000551 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30368, posNoise = 7, negNoise = 8
17-03-17 19:20:05.928 -07 000000551 INF: Z Motor: After move to -0.135399, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:20:05.928 -07 000000551 INF: Z Motor: Settle wait time = 1435 ms, measure time = 105 ms (allowed 150 ms), total time = 1540 ms
17-03-17 19:20:05.928 -07 000000551 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:20:05.978 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 19:20:05.978 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:20:05.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:20:05.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:20:05.978 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:20:05.978 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:20:05.978 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:20:05.978 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:20:05.978 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:20:05.978 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:20:05.988 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:20:05.988 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:20:05.988 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:20:05.988 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:20:05.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:20:06.038 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:20:06.238 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:20:06.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:20:06.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:20:06.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 19:20:06.278 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:20:06.278 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 19:20:06.278 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 287 ms overall
17-03-17 19:20:06.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:20:06.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:06.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:20:06.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:20:06.378 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:20:06.378 -07 000000480 INF: Autofocus start
17-03-17 19:20:06.378 -07 000000480 INF: MeasureProfile start
17-03-17 19:20:06.378 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:20:06.388 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:20:06.388 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:20:06.398 -07 000000480 INF: MeasureProfile done
17-03-17 19:20:06.398 -07 000000480 INF: X=7  Z correction [um]=0.009724405
17-03-17 19:20:06.398 -07 000000480 INF: Autofocus finished
17-03-17 19:20:06.588 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:20:06.588 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:20:06.588 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.135413826332132. ----------
17-03-17 19:20:06.588 -07 000000610 INF: Cycle	24	Tile	17	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:20:06.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28093, sync = True, waitForSettling = True)
17-03-17 19:20:06.598 -07 000000610 INF: Z Motor: Moving to -0.128602 mm, started at -0.135414 mm, distance = 6.81 um
17-03-17 19:20:06.598 -07 000000610 INF: FPGA: Xmit ZDACW 28093\n [Z Motor]
17-03-17 19:20:06.598 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:20:06.608 -07 000000610 INF: FPGA: 'ZDACW 28093' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:20:06.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:20:06.608 -07 000000627 INF: FPGA: Recv ZDACR 28093
17-03-17 19:20:06.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:06.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:20:06.678 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:20:06.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:20:06.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:06.768 -07 000000486 INF: FPGA: Recv ZSGSRD 29303
17-03-17 19:20:06.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:20:06.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:06.778 -07 000000623 INF: FPGA: Recv ZSGSRD 29313
17-03-17 19:20:06.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:06.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:06.788 -07 000000551 INF: FPGA: Recv ZSGSRD 29308
17-03-17 19:20:06.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:06.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:06.798 -07 000000512 INF: FPGA: Recv ZSGSRD 29302
17-03-17 19:20:06.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:06.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:06.808 -07 000000429 INF: FPGA: Recv ZSGSRD 29312
17-03-17 19:20:06.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:06.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:06.818 -07 000000382 INF: FPGA: Recv ZSGSRD 29312
17-03-17 19:20:06.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:06.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:06.828 -07 000000480 INF: FPGA: Recv ZSGSRD 29307
17-03-17 19:20:06.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:06.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:06.838 -07 000000512 INF: FPGA: Recv ZSGSRD 29311
17-03-17 19:20:06.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:06.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:06.848 -07 000000551 INF: FPGA: Recv ZSGSRD 29307
17-03-17 19:20:06.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:06.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:06.858 -07 000000512 INF: FPGA: Recv ZSGSRD 29309
17-03-17 19:20:06.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:06.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:20:06.868 -07 000000551 INF: FPGA: Recv ZPIEZORD 24990
17-03-17 19:20:06.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:06.878 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.287 V. Piezo Error = -9.5 V.
17-03-17 19:20:06.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29308 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29308 (-127.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29302 (-127.8 uncal um), Max = 29313 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:20:06.878 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29308, posNoise = 5, negNoise = 6
17-03-17 19:20:06.878 -07 000000610 INF: Z Motor: After move to -0.128602, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:20:06.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:20:06.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:20:06.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:20:06.878 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:20:06.878 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:20:06.878 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:20:06.878 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:20:06.878 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:20:06.878 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:20:06.878 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:20:06.878 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:20:06.878 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:20:06.878 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:20:06.888 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:20:06.888 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:20:06.888 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:20:06.888 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:20:06.898 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:20:06.898 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:20:06.898 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:20:06.898 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:20:06.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28270 150\n [Camera]
17-03-17 19:20:07.098 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:20:07.498 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:20:07.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:20:07.498 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:20:07.508 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:20:07.508 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:20:07.508 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-17 19:20:07.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:20:07.508 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:20:07.518 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:20:07.518 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) start.
17-03-17 19:20:07.688 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28270 785
17-03-17 19:20:07.838 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:20:07.898 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:20:07.898 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:20:07.898 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:07.898 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:20:07.898 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:20:07.908 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:20:07.908 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:20:07.908 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:07.908 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:20:07.918 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:20:08.028 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:20:08.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:20:08.028 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:20:08.148 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:20:08.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:20:08.148 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:20:08.148 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:20:08.148 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) start.
17-03-17 19:20:08.148 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:20:08.148 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:20:08.218 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:20:08.218 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:20:08.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28270 150' command took 2 ms to send, 1319 ms to get response, and 1327 ms overall
17-03-17 19:20:08.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:20:08.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.128604161461865. ------
17-03-17 19:20:08.228 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:20:08.228 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13504 mm
17-03-17 19:20:08.228 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:20:08.228 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:20:08.228 -07 000000438 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 19:20:08.228 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29499, sync = True, waitForSettling = False)
17-03-17 19:20:08.228 -07 000000623 INF: Z Motor: Moving to -0.135038 mm, started at -0.128604 mm, distance = -6.43 um
17-03-17 19:20:08.228 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:20:08.238 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:20:08.238 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:20:08.238 -07 000000382 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:20:08.248 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:20:08.248 -07 000000438 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:20:08.248 -07 000000438 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:20:08.248 -07 000000438 INF: Y Motor: Moving 1353 steps-32
17-03-17 19:20:08.248 -07 000000623 INF: FPGA: Xmit ZDACW 29499\n [Z Motor]
17-03-17 19:20:08.248 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:20:08.258 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:20:08.258 -07 000000623 INF: FPGA: 'ZDACW 29499' command took 3 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 19:20:08.268 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:20:08.278 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:20:08.278 -07 000000512 INF: FPGA: Recv ZDACR 29499
17-03-17 19:20:08.288 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:20:08.288 -07 000000623 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 19:20:08.458 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:20:08.458 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:20:08.548 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:20:08.548 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:20:08.548 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:08.548 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:20:08.548 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:20:08.548 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:08.558 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:20:08.558 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-17 19:20:08.558 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:20:08.558 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:20:08.638 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 19:20:08.638 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 19:20:08.668 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:20:08.668 -07 000000512 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:20:08.678 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:20:08.678 -07 000000438 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:20:08.678 -07 000000438 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:20:08.678 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.846 mm, average velocity = 2.141 mm/sec
17-03-17 19:20:09.628 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:20:09.628 -07 000000431 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:20:09.638 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:20:09.638 -07 000000438 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:20:09.648 -07 000000438 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:20:09.648 -07 000000438 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:20:09.648 -07 000000438 INF: Y Motor: Moved to 74.0088 after 1417 ms (table move)
17-03-17 19:20:09.658 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135038 mm (DAC = 29499)
17-03-17 19:20:09.658 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:09.658 -07 000000382 INF: FPGA: Recv ZSGSRD 30310
17-03-17 19:20:09.668 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:09.668 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:09.668 -07 000000438 INF: FPGA: Recv ZSGSRD 30310
17-03-17 19:20:09.678 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:09.678 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:09.678 -07 000000438 INF: FPGA: Recv ZSGSRD 30305
17-03-17 19:20:09.688 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:09.688 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:09.688 -07 000000438 INF: FPGA: Recv ZSGSRD 30311
17-03-17 19:20:09.698 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:09.698 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:09.698 -07 000000429 INF: FPGA: Recv ZSGSRD 30315
17-03-17 19:20:09.708 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:09.708 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:09.708 -07 000000623 INF: FPGA: Recv ZSGSRD 30310
17-03-17 19:20:09.718 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:20:09.718 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:09.718 -07 000000623 INF: FPGA: Recv ZSGSRD 30316
17-03-17 19:20:09.728 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:09.728 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:09.728 -07 000000429 INF: FPGA: Recv ZSGSRD 30307
17-03-17 19:20:09.738 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:09.738 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:09.738 -07 000000429 INF: FPGA: Recv ZSGSRD 30309
17-03-17 19:20:09.748 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:09.748 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:09.748 -07 000000623 INF: FPGA: Recv ZSGSRD 30304
17-03-17 19:20:09.758 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:09.758 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:20:09.758 -07 000000480 INF: FPGA: Recv ZPIEZORD 26279
17-03-17 19:20:09.768 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:09.768 -07 000000424 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -8.9 V.
17-03-17 19:20:09.768 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30310 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30310 (-134.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30304 (-134.2 uncal um), Max = 30316 (-134.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:20:09.768 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30310, posNoise = 6, negNoise = 6
17-03-17 19:20:09.768 -07 000000424 INF: Z Motor: After move to -0.135038, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:20:09.768 -07 000000424 INF: Z Motor: Settle wait time = 1421 ms, measure time = 110 ms (allowed 150 ms), total time = 1531 ms
17-03-17 19:20:09.768 -07 000000424 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 19:20:09.808 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 19:20:09.808 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:20:09.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:20:09.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:20:09.808 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:20:09.808 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:20:09.808 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:20:09.808 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:20:09.808 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:20:09.808 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:20:09.818 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:20:09.818 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:20:09.828 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 19:20:09.828 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:20:09.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:20:09.868 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:20:10.068 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:20:10.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:20:10.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:20:10.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 19:20:10.108 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:20:10.108 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 19:20:10.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 19:20:10.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 19:20:10.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:10.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:20:10.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 19:20:10.308 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:20:10.308 -07 000000551 INF: Autofocus start
17-03-17 19:20:10.308 -07 000000551 INF: MeasureProfile start
17-03-17 19:20:10.318 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:20:10.318 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:20:10.318 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:20:10.328 -07 000000551 INF: MeasureProfile done
17-03-17 19:20:10.328 -07 000000551 INF: X=-14  Z correction [um]=-0.07155244
17-03-17 19:20:10.328 -07 000000551 INF: Autofocus finished
17-03-17 19:20:10.518 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:20:10.518 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:20:10.528 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.13504122202791. ----------
17-03-17 19:20:10.528 -07 000000610 INF: Cycle	24	Tile	18	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:20:10.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27996, sync = True, waitForSettling = True)
17-03-17 19:20:10.528 -07 000000610 INF: Z Motor: Moving to -0.128157 mm, started at -0.135041 mm, distance = 6.88 um
17-03-17 19:20:10.528 -07 000000610 INF: FPGA: Xmit ZDACW 27996\n [Z Motor]
17-03-17 19:20:10.528 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:20:10.538 -07 000000610 INF: FPGA: 'ZDACW 27996' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:20:10.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:20:10.538 -07 000000438 INF: FPGA: Recv ZDACR 27996
17-03-17 19:20:10.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:10.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:20:10.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:10.698 -07 000000476 INF: FPGA: Recv ZSGSRD 29237
17-03-17 19:20:10.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:10.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:10.708 -07 000000486 INF: FPGA: Recv ZSGSRD 29236
17-03-17 19:20:10.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:10.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:10.718 -07 000000623 INF: FPGA: Recv ZSGSRD 29242
17-03-17 19:20:10.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:10.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:10.728 -07 000000438 INF: FPGA: Recv ZSGSRD 29237
17-03-17 19:20:10.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:10.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:10.738 -07 000000476 INF: FPGA: Recv ZSGSRD 29238
17-03-17 19:20:10.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:10.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:10.748 -07 000000623 INF: FPGA: Recv ZSGSRD 29237
17-03-17 19:20:10.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:10.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:10.758 -07 000000476 INF: FPGA: Recv ZSGSRD 29238
17-03-17 19:20:10.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:10.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:10.768 -07 000000424 INF: FPGA: Recv ZSGSRD 29238
17-03-17 19:20:10.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:10.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:10.778 -07 000000486 INF: FPGA: Recv ZSGSRD 29235
17-03-17 19:20:10.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:10.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:10.788 -07 000000476 INF: FPGA: Recv ZSGSRD 29239
17-03-17 19:20:10.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:10.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:20:10.798 -07 000000486 INF: FPGA: Recv ZPIEZORD 24905
17-03-17 19:20:10.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:10.808 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.272 V. Piezo Error = -9.5 V.
17-03-17 19:20:10.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29238 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29238 (-127.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29235 (-127.4 uncal um), Max = 29242 (-127.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:20:10.808 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29238, posNoise = 4, negNoise = 3
17-03-17 19:20:10.808 -07 000000610 INF: Z Motor: After move to -0.128157, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:20:10.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:20:10.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:20:10.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:20:10.808 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:20:10.808 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:20:10.808 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:20:10.808 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:20:10.808 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:20:10.808 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:20:10.808 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:20:10.808 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:20:10.808 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:20:10.808 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:20:10.818 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:20:10.818 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:20:10.818 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:20:10.818 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:20:10.828 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.977204,
17-03-17 19:20:10.828 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:20:10.828 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:20:10.828 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:20:10.828 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:20:10.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28173 150\n [Camera]
17-03-17 19:20:11.028 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:20:11.438 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:20:11.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:20:11.438 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:20:11.438 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:20:11.438 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2609049928, 0x0, 391868352) start.
17-03-17 19:20:11.438 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:20:11.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:20:11.438 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:20:11.438 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:20:11.438 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2644472192, 0x0, 418435064) start.
17-03-17 19:20:11.628 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28173 785
17-03-17 19:20:11.678 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:20:11.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 23. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:20:11.778 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:20:11.808 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2609049928, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:20:11.808 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:20:11.808 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:11.818 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2644472192, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:20:11.818 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:20:11.818 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:11.818 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:20:11.818 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:20:11.818 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:20:11.828 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:20:11.968 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:20:11.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:20:11.968 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:20:12.078 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:20:12.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:20:12.078 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:20:12.088 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:20:12.088 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:20:12.088 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:20:12.088 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:20:12.158 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:20:12.158 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:20:12.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28173 150' command took 2 ms to send, 1317 ms to get response, and 1334 ms overall
17-03-17 19:20:12.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:20:12.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.128154466611942. ------
17-03-17 19:20:12.168 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:20:12.168 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13446 mm
17-03-17 19:20:12.168 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:20:12.168 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:20:12.168 -07 000000627 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 19:20:12.168 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:20:12.168 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29374, sync = True, waitForSettling = False)
17-03-17 19:20:12.168 -07 000000512 INF: Z Motor: Moving to -0.134466 mm, started at -0.128154 mm, distance = -6.31 um
17-03-17 19:20:12.178 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:20:12.178 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:20:12.178 -07 000000431 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:20:12.188 -07 000000512 INF: FPGA: Xmit ZDACW 29374\n [Z Motor]
17-03-17 19:20:12.188 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:20:12.188 -07 000000627 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:20:12.188 -07 000000627 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:20:12.188 -07 000000627 INF: Y Motor: Moving 1350 steps-28
17-03-17 19:20:12.188 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:20:12.198 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:20:12.198 -07 000000512 INF: FPGA: 'ZDACW 29374' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:20:12.208 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:20:12.218 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:20:12.218 -07 000000431 INF: FPGA: Recv ZDACR 29374
17-03-17 19:20:12.228 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:20:12.228 -07 000000512 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 19:20:12.398 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:20:12.398 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:20:12.488 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:20:12.488 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:20:12.488 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:12.488 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:20:12.488 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:20:12.488 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:12.488 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:20:12.488 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 19:20:12.488 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:20:12.498 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 19:20:12.578 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 19:20:12.578 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:20:12.608 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:20:12.608 -07 000000480 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:20:12.618 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:20:12.618 -07 000000627 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:20:12.618 -07 000000627 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 19:20:12.618 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 19:20:13.568 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:20:13.568 -07 000000476 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:20:13.578 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:20:13.578 -07 000000627 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:20:13.588 -07 000000627 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:20:13.588 -07 000000627 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:20:13.588 -07 000000627 INF: Y Motor: Moved to 74.8330 after 1419 ms (table move)
17-03-17 19:20:13.588 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134466 mm (DAC = 29374)
17-03-17 19:20:13.588 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:13.598 -07 000000480 INF: FPGA: Recv ZSGSRD 30225
17-03-17 19:20:13.598 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 19:20:13.598 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:13.608 -07 000000541 INF: FPGA: Recv ZSGSRD 30216
17-03-17 19:20:13.608 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:20:13.608 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:13.608 -07 000000431 INF: FPGA: Recv ZSGSRD 30218
17-03-17 19:20:13.618 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:13.618 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:13.618 -07 000000541 INF: FPGA: Recv ZSGSRD 30215
17-03-17 19:20:13.628 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:13.628 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:13.628 -07 000000627 INF: FPGA: Recv ZSGSRD 30218
17-03-17 19:20:13.638 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:13.638 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:13.638 -07 000000512 INF: FPGA: Recv ZSGSRD 30216
17-03-17 19:20:13.648 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:13.648 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:13.648 -07 000000476 INF: FPGA: Recv ZSGSRD 30224
17-03-17 19:20:13.658 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:13.658 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:13.658 -07 000000541 INF: FPGA: Recv ZSGSRD 30228
17-03-17 19:20:13.668 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:13.668 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:13.668 -07 000000476 INF: FPGA: Recv ZSGSRD 30226
17-03-17 19:20:13.678 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:13.678 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:13.678 -07 000000480 INF: FPGA: Recv ZSGSRD 30225
17-03-17 19:20:13.688 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:13.688 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:20:13.688 -07 000000431 INF: FPGA: Recv ZPIEZORD 26210
17-03-17 19:20:13.698 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:13.698 -07 000000429 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.482 V. Piezo Error = -8.8 V.
17-03-17 19:20:13.698 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30221 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30221 (-133.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30215 (-133.6 uncal um), Max = 30228 (-133.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:20:13.698 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30221, posNoise = 7, negNoise = 6
17-03-17 19:20:13.698 -07 000000429 INF: Z Motor: After move to -0.134466, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:20:13.698 -07 000000429 INF: Z Motor: Settle wait time = 1421 ms, measure time = 102 ms (allowed 150 ms), total time = 1523 ms
17-03-17 19:20:13.698 -07 000000429 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 19:20:13.748 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1576 ms
17-03-17 19:20:13.748 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:20:13.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:20:13.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:20:13.748 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:20:13.748 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:20:13.748 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:20:13.748 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:20:13.748 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:20:13.748 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:20:13.758 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:20:13.758 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:20:13.758 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:20:13.758 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:20:13.768 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:20:13.808 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:20:14.008 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:20:14.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:20:14.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:20:14.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-17 19:20:14.048 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:20:14.048 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 19:20:14.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 19:20:14.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:20:14.128 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:14.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:20:14.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:20:14.148 -07 000000431 INF: Autofocus start
17-03-17 19:20:14.148 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:20:14.148 -07 000000431 INF: MeasureProfile start
17-03-17 19:20:14.148 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:20:14.158 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:20:14.158 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:20:14.158 -07 000000431 INF: MeasureProfile done
17-03-17 19:20:14.158 -07 000000431 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:20:14.158 -07 000000431 INF: Autofocus finished
17-03-17 19:20:14.358 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:20:14.358 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:20:14.358 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.134469467147293. ----------
17-03-17 19:20:14.358 -07 000000610 INF: Cycle	24	Tile	19	Exposure Settings		A	400	G	192	T	192	C	400
17-03-17 19:20:14.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27898, sync = True, waitForSettling = True)
17-03-17 19:20:14.368 -07 000000610 INF: Z Motor: Moving to -0.127709 mm, started at -0.134469 mm, distance = 6.76 um
17-03-17 19:20:14.368 -07 000000610 INF: FPGA: Xmit ZDACW 27898\n [Z Motor]
17-03-17 19:20:14.368 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:20:14.378 -07 000000610 INF: FPGA: 'ZDACW 27898' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:14.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:20:14.378 -07 000000541 INF: FPGA: Recv ZDACR 27898
17-03-17 19:20:14.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:14.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:20:14.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:14.538 -07 000000627 INF: FPGA: Recv ZSGSRD 29172
17-03-17 19:20:14.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:20:14.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:14.548 -07 000000593 INF: FPGA: Recv ZSGSRD 29171
17-03-17 19:20:14.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:14.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:14.558 -07 000000429 INF: FPGA: Recv ZSGSRD 29169
17-03-17 19:20:14.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:14.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:14.568 -07 000000501 INF: FPGA: Recv ZSGSRD 29166
17-03-17 19:20:14.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:14.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:14.578 -07 000000476 INF: FPGA: Recv ZSGSRD 29172
17-03-17 19:20:14.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:14.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:14.588 -07 000000593 INF: FPGA: Recv ZSGSRD 29177
17-03-17 19:20:14.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:14.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:14.598 -07 000000431 INF: FPGA: Recv ZSGSRD 29173
17-03-17 19:20:14.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:14.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:14.608 -07 000000626 INF: FPGA: Recv ZSGSRD 29166
17-03-17 19:20:14.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:14.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:14.618 -07 000000476 INF: FPGA: Recv ZSGSRD 29170
17-03-17 19:20:14.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:14.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:20:14.628 -07 000000593 INF: FPGA: Recv ZSGSRD 29170
17-03-17 19:20:14.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:14.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:20:14.638 -07 000000431 INF: FPGA: Recv ZPIEZORD 24835
17-03-17 19:20:14.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:14.648 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.257 V. Piezo Error = -9.5 V.
17-03-17 19:20:14.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29171 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29170 (-126.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29166 (-126.9 uncal um), Max = 29177 (-127.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:20:14.648 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29171, posNoise = 6, negNoise = 5
17-03-17 19:20:14.648 -07 000000610 INF: Z Motor: After move to -0.127709, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:20:14.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:20:14.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:20:14.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:20:14.648 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:20:14.648 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:20:14.648 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:20:14.648 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:20:14.648 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:20:14.648 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:20:14.648 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:20:14.648 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:20:14.648 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:20:14.648 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:20:14.658 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:20:14.658 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:20:14.658 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:20:14.658 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:20:14.668 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:20:14.668 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:20:14.668 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 19:20:14.668 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:20:14.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28075 150\n [Camera]
17-03-17 19:20:14.868 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:20:15.268 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 19:20:15.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 19:20:15.268 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:20:15.268 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:20:15.268 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2609049928, 0x0, 391868352) start.
17-03-17 19:20:15.268 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 19:20:15.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 19:20:15.268 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:20:15.268 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:20:15.268 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2644472192, 0x0, 418435064) start.
17-03-17 19:20:15.458 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28075 785
17-03-17 19:20:15.608 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:20:15.658 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2644472192, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:20:15.658 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:20:15.658 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:15.658 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:20:15.658 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2609049928, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 19:20:15.658 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:20:15.658 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:15.668 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:20:15.668 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:20:15.668 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:20:15.808 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-17 19:20:15.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-17 19:20:15.808 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:20:15.908 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-17 19:20:15.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-17 19:20:15.908 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:20:15.918 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:20:15.918 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:20:15.918 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:20:15.918 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:20:15.998 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 19:20:15.998 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:20:15.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28075 150' command took 2 ms to send, 1322 ms to get response, and 1329 ms overall
17-03-17 19:20:16.228 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.979922,
17-03-17 19:20:16.318 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:20:16.318 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:20:16.318 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:16.318 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:20:16.318 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:20:16.318 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:20:16.328 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:20:16.328 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 19:20:16.328 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:20:16.328 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:20:16.328 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 19:20:16.368 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 19:20:16.368 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:20:16.408 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 19:20:16.428 -07 000000610 INF: Enabling Skipping AutoFocus in the next 5 cycles.
17-03-17 19:20:16.428 -07 000000610 INF: Imaging Cycle 24: ScanTilesCommand Cycle 24 time end. Duration was 151061 ms.
17-03-17 19:20:16.428 -07 000000610 INF: =================== Cycle #24 ===================
17-03-17 19:20:16.428 -07 000000610 INF: ===================  ===================
17-03-17 19:20:16.428 -07 000000626 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:20:16.428 -07 000000478 INF: FPGA: Recv EXLED1ADCR 27
17-03-17 19:20:16.438 -07 000000626 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:20:16.438 -07 000000626 INF: GreenLED: Using Green data: Photodiode ADC 27 --> 0.0 mW (old method), or 2.0 mW (new method). Difference = 2.0 mW
17-03-17 19:20:16.438 -07 000000626 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 24, FrontChillerTemperature: 3.979922, FrontChillerHeatSinkTemperature: 0.552344, AmbientTemperature: 18.93702, FlowCellCompartmentTemperature: 21.98965, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.85592, GreenLEDSensorTemperature: 25.65723, PhotodiodePowerAdcGreen: 27, PhotodiodePowerMwGreen: 2.018235
17-03-17 19:20:16.448 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.