17-03-17 19:20:16.498 -07 000000610 INF: =================== Cycle #25 ===================
17-03-17 19:20:16.498 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 19:20:16.498 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-17 19:20:16.498 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:20:16.508 -07 000000478 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:20:16.508 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 19:20:16.508 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:20:16.508 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 19:20:16.508 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 19:20:16.508 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 19:20:16.618 -07 000000478 INF: FPGA: Recv YMVTO 154377 870
17-03-17 19:20:16.618 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 108 ms to get response, and 116 ms overall
17-03-17 19:20:16.618 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 19:20:16.618 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 870 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 19:20:16.618 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.720 mm/sec
17-03-17 19:20:16.678 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:20:16.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:20:19.618 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:20:19.618 -07 000000478 INF: FPGA: Recv YRDPOS 154379
17-03-17 19:20:19.628 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:20:19.628 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:20:19.638 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:20:19.638 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 19:20:19.638 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3138 ms
17-03-17 19:20:19.648 -07 000000610 INF: =================== Cycle #25, Flow Cell Temp 60° ===================
17-03-17 19:20:19.648 -07 000000610 INF: =================== Cycle #25, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 19:20:19.648 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 19:20:19.648 -07 000000480 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:20:19.658 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:20:19.658 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:20:19.658 -07 000000501 INF: FPGA: Recv TEC2EN 
17-03-17 19:20:19.668 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:20:19.668 -07 000000610 INF: =================== Cycle #25, Flow Cell Temp 60° ===================
17-03-17 19:20:19.668 -07 000000610 INF: =================== Cycle #25 ===================
17-03-17 19:20:19.668 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:20:19.668 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:20:19.698 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:20:19.698 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 19:20:19.698 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:20:19.998 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:20:20.018 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:20:20.018 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:20:20.068 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:20:20.088 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:20:20.088 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:20:20.188 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3) ===================
17-03-17 19:20:20.188 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:20:20.188 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:20:20.218 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:20:20.218 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:20:20.218 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:20:20.348 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:20:20.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:20:21.588 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.004458,
17-03-17 19:20:21.678 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:20:21.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=290, R2=305, Total=595. Warn if over 250 bubbles per interval.
17-03-17 19:20:23.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:23.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:20:23.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:23.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:20:24.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:24.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:20:24.448 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:20:24.448 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3) ===================
17-03-17 19:20:24.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:20:24.608 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:20:24.608 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:20:24.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:20:24.768 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:20:24.768 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:20:24.768 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:20:24.898 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:20:24.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:20:25.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:25.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:20:25.388 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:20:25.388 -07 000000610 INF: =================== Cycle #25 ===================
17-03-17 19:20:26.608 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:20:26.608 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 19:20:26.608 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:20:26.628 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:20:26.628 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 19:20:26.628 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 19:20:26.678 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 19:20:26.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=291, R2=306, Total=597. Warn if over 250 bubbles per interval.
17-03-17 19:20:26.768 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:20:26.788 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 19:20:26.788 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 19:20:26.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:20:26.858 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:20:26.858 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:20:26.948 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.004458,
17-03-17 19:20:26.958 -07 000000610 INF: =================== Cycle #25, Pumping Reagent CMS (4) ===================
17-03-17 19:20:26.958 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:20:26.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:20:26.988 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:20:26.988 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:20:26.988 -07 000000610 INF: =================== Cycle #25, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 19:20:27.118 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:20:27.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:20:28.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:28.628 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:20:29.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:29.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:20:29.078 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:20:29.078 -07 000000610 INF: =================== Cycle #25, Pumping Reagent CMS (4) ===================
17-03-17 19:20:29.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:20:29.238 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:20:29.238 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:20:29.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:20:29.398 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:20:29.398 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:20:29.398 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:20:29.528 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:20:29.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:20:29.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:30.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:20:30.018 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:20:30.018 -07 000000610 INF: =================== Cycle #25 ===================
17-03-17 19:20:31.238 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:20:31.238 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:20:31.238 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:20:31.258 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:20:31.258 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 19:20:31.258 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 19:20:31.408 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:20:31.428 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 19:20:31.428 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 19:20:31.478 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:20:31.498 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:20:31.498 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:20:31.598 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3) ===================
17-03-17 19:20:31.598 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:20:31.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:20:31.638 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:20:31.638 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:20:31.638 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:20:31.678 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 19:20:31.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=291, R2=307, Total=598. Warn if over 250 bubbles per interval.
17-03-17 19:20:31.768 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:20:31.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:20:32.678 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:32.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:20:32.758 -07 000000610 INF: LanePump: Waited 949 ms for pump motion to complete
17-03-17 19:20:32.758 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3) ===================
17-03-17 19:20:32.888 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:20:32.918 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:20:32.918 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:20:33.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:20:33.058 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.011254,
17-03-17 19:20:33.078 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:20:33.078 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:20:33.078 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:20:33.208 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:20:33.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:20:33.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:33.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:20:33.698 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:20:33.698 -07 000000610 INF: =================== Cycle #25 ===================
17-03-17 19:20:33.698 -07 000000478 INF: WaitCommand(10000) start
17-03-17 19:20:33.698 -07 000000476 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:20:33.698 -07 000000476 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:20:34.918 -07 000000476 INF: AsyncDelayTimer waited 1215ms
17-03-17 19:20:34.918 -07 000000476 INF: LanePump: Xmit /1?\r
17-03-17 19:20:34.948 -07 000000476 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:20:34.948 -07 000000476 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:20:35.078 -07 000000476 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:20:35.118 -07 000000476 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:20:36.648 -07 000000476 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:36.678 -07 000000476 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:20:36.678 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 19:20:36.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=292, R2=309, Total=601. Warn if over 250 bubbles per interval.
17-03-17 19:20:37.098 -07 000000476 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:37.128 -07 000000476 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:20:37.128 -07 000000476 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:20:37.128 -07 000000476 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:20:37.128 -07 000000476 INF: ===================  ===================
17-03-17 19:20:38.418 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.001704,
17-03-17 19:20:41.678 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 19:20:41.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=292, R2=310, Total=602. Warn if over 250 bubbles per interval.
17-03-17 19:20:43.708 -07 000000478 INF: WaitCommand(10000) end
17-03-17 19:20:43.708 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3) ===================
17-03-17 19:20:43.708 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 19:20:43.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:20:43.748 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:20:43.748 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:20:43.748 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:20:43.788 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.008536,
17-03-17 19:20:43.878 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 19:20:43.918 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:20:46.678 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 6
17-03-17 19:20:46.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=6, R2=7, Total=13. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=298, R2=317, Total=615. Warn if over 250 bubbles per interval.
17-03-17 19:20:49.168 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.985358,
17-03-17 19:20:50.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:50.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:20:50.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:50.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:20:50.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:50.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:20:51.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:51.428 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:20:51.678 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 19:20:51.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=299, R2=318, Total=617. Warn if over 250 bubbles per interval.
17-03-17 19:20:51.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:51.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:20:51.878 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 19:20:51.878 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3) ===================
17-03-17 19:20:52.008 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:20:52.038 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:20:52.038 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:20:52.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:20:52.198 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:20:52.198 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:20:52.198 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:20:52.328 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:20:52.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:20:52.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:52.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:20:52.818 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:20:52.818 -07 000000610 INF: =================== Cycle #25 ===================
17-03-17 19:20:54.038 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 19:20:54.038 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 19:20:54.038 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:20:54.058 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:20:54.058 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 19:20:54.058 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 19:20:54.268 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:20:54.288 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 19:20:54.288 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 19:20:54.338 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:20:54.358 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:20:54.358 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:20:54.458 -07 000000610 INF: =================== Cycle #25, Pumping Reagent IMT (1) ===================
17-03-17 19:20:54.458 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:20:54.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:20:54.488 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:20:54.488 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:20:54.488 -07 000000610 INF: =================== Cycle #25, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 19:20:54.618 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:20:54.658 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:20:55.378 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.978563,
17-03-17 19:20:56.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:56.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:20:56.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:56.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:20:56.578 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:20:56.578 -07 000000610 INF: =================== Cycle #25, Pumping Reagent IMT (1) ===================
17-03-17 19:20:56.678 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:20:56.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=299, R2=318, Total=617. Warn if over 250 bubbles per interval.
17-03-17 19:20:56.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:20:56.738 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:20:56.738 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:20:56.868 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:20:56.898 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:20:56.898 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:20:56.898 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:20:57.028 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:20:57.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:20:57.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:20:57.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:20:57.518 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:20:57.518 -07 000000610 INF: =================== Cycle #25 ===================
17-03-17 19:20:58.738 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 19:20:58.738 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:20:58.738 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:20:58.758 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:20:58.758 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 19:20:58.758 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:20:58.988 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:20:59.008 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 19:20:59.008 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 19:20:59.058 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:20:59.078 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:20:59.078 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:20:59.178 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3) ===================
17-03-17 19:20:59.178 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:20:59.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:20:59.208 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:20:59.208 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:20:59.208 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:20:59.338 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:20:59.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:21:00.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:21:00.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:21:00.278 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:21:00.278 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3) ===================
17-03-17 19:21:00.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:21:00.438 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:21:00.438 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:21:00.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:21:00.598 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:21:00.598 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:21:00.598 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:21:00.728 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:21:00.738 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.98264,
17-03-17 19:21:00.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:21:01.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:21:01.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:21:01.218 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:21:01.218 -07 000000610 INF: =================== Cycle #25 ===================
17-03-17 19:21:01.218 -07 000000610 INF: =================== Cycle #25, Flow Cell Temp 65° ===================
17-03-17 19:21:01.218 -07 000000610 INF: =================== Cycle #25, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 19:21:01.218 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 19:21:01.218 -07 000000433 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:21:01.228 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:21:01.228 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:21:01.228 -07 000000541 INF: FPGA: Recv TEC2EN 
17-03-17 19:21:01.238 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:21:01.238 -07 000000610 INF: =================== Cycle #25, Flow Cell Temp 65° ===================
17-03-17 19:21:01.238 -07 000000610 INF: =================== Cycle #25 ===================
17-03-17 19:21:01.238 -07 000000610 INF: WaitCommand(30000) start
17-03-17 19:21:01.678 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 6
17-03-17 19:21:01.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=6, R2=1, Total=7. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=305, R2=319, Total=624. Warn if over 250 bubbles per interval.
17-03-17 19:21:06.838 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 19:21:06.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=305, R2=321, Total=626. Warn if over 250 bubbles per interval.
17-03-17 19:21:06.838 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.02213,
17-03-17 19:21:11.678 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:21:11.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=305, R2=321, Total=626. Warn if over 250 bubbles per interval.
17-03-17 19:21:12.198 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.020806,
17-03-17 19:21:16.678 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 19:21:16.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=305, R2=322, Total=627. Warn if over 250 bubbles per interval.
17-03-17 19:21:17.568 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.005817,
17-03-17 19:21:21.678 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:21:21.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=305, R2=322, Total=627. Warn if over 250 bubbles per interval.
17-03-17 19:21:23.658 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.012614,
17-03-17 19:21:26.678 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:21:26.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=305, R2=322, Total=627. Warn if over 250 bubbles per interval.
17-03-17 19:21:29.018 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.045313,
17-03-17 19:21:31.248 -07 000000610 INF: WaitCommand(30000) end
17-03-17 19:21:31.248 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3) ===================
17-03-17 19:21:31.248 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 19:21:31.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:21:31.378 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:21:31.378 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:21:31.378 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:21:31.508 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 19:21:31.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:21:31.678 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:21:31.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=305, R2=322, Total=627. Warn if over 250 bubbles per interval.
17-03-17 19:21:32.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:21:32.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:21:32.118 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-17 19:21:32.118 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3) ===================
17-03-17 19:21:32.248 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:21:32.278 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:21:32.278 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:21:32.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:21:32.438 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:21:32.438 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:21:32.438 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:21:32.568 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:21:32.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:21:33.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:21:33.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:21:33.058 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:21:33.058 -07 000000610 INF: =================== Cycle #25 ===================
17-03-17 19:21:33.058 -07 000000478 INF: WaitCommand(30000) start
17-03-17 19:21:33.058 -07 000000541 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:21:33.058 -07 000000541 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:21:34.278 -07 000000541 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:21:34.278 -07 000000541 INF: LanePump: Xmit /1?\r
17-03-17 19:21:34.308 -07 000000541 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:21:34.308 -07 000000541 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:21:34.388 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.020806,
17-03-17 19:21:34.438 -07 000000541 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:21:34.998 -07 000000541 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:21:36.678 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 19:21:36.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=306, R2=322, Total=628. Warn if over 250 bubbles per interval.
17-03-17 19:21:37.338 -07 000000541 INF: LanePump: Xmit /1Q\r
17-03-17 19:21:37.368 -07 000000541 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:21:37.368 -07 000000541 INF: LanePump: Waited 2370 ms for pump motion to complete
17-03-17 19:21:37.368 -07 000000541 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:21:37.368 -07 000000541 INF: ===================  ===================
17-03-17 19:21:40.328 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.993549,
17-03-17 19:21:41.678 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:21:41.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=306, R2=322, Total=628. Warn if over 250 bubbles per interval.
17-03-17 19:21:45.688 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.973092,
17-03-17 19:21:46.678 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:21:46.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=306, R2=322, Total=628. Warn if over 250 bubbles per interval.
17-03-17 19:21:51.058 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.007176,
17-03-17 19:21:51.748 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:21:51.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=306, R2=322, Total=628. Warn if over 250 bubbles per interval.
17-03-17 19:21:56.678 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:21:56.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=306, R2=322, Total=628. Warn if over 250 bubbles per interval.
17-03-17 19:21:57.078 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.993549,
17-03-17 19:22:01.678 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:22:01.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=306, R2=322, Total=628. Warn if over 250 bubbles per interval.
17-03-17 19:22:02.438 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.012614,
17-03-17 19:22:03.068 -07 000000478 INF: WaitCommand(30000) end
17-03-17 19:22:03.068 -07 000000610 INF: =================== Cycle #25, Flow Cell Temp 22° ===================
17-03-17 19:22:03.068 -07 000000610 INF: =================== Cycle #25, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 19:22:03.068 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 19:22:03.078 -07 000000623 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:22:03.088 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:22:03.088 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:22:03.088 -07 000000623 INF: FPGA: Recv TEC2EN 
17-03-17 19:22:03.098 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:03.098 -07 000000610 INF: =================== Cycle #25, Flow Cell Temp 22° ===================
17-03-17 19:22:03.098 -07 000000610 INF: =================== Cycle #25 ===================
17-03-17 19:22:03.098 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3) ===================
17-03-17 19:22:03.098 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:22:03.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:22:03.138 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:22:03.138 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:22:03.138 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:22:03.268 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:22:03.308 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:22:06.438 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:22:06.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:22:06.678 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 3
17-03-17 19:22:06.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=3, R2=6, Total=9. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:22:06.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:22:06.918 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:22:07.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:22:07.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:22:07.368 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:22:07.368 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3) ===================
17-03-17 19:22:07.498 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:22:07.528 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:22:07.528 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:22:07.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:22:07.688 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:22:07.688 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:22:07.688 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:22:07.808 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.990831,
17-03-17 19:22:07.818 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:22:07.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:22:08.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:22:08.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:22:08.308 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:22:08.308 -07 000000610 INF: =================== Cycle #25 ===================
17-03-17 19:22:09.528 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:22:09.528 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 19:22:09.528 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:22:09.548 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:22:09.548 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 19:22:09.548 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 19:22:09.698 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:22:09.718 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:22:09.718 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:22:09.768 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:22:09.788 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:22:09.788 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:22:09.888 -07 000000610 INF: =================== Cycle #25, Pumping Reagent USM (2) ===================
17-03-17 19:22:09.888 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:22:09.888 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:22:09.918 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:22:09.918 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:22:09.918 -07 000000610 INF: =================== Cycle #25, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 19:22:10.048 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:22:10.088 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:22:11.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:22:11.558 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:22:11.678 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:22:11.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:22:11.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:22:12.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:22:12.008 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:22:12.008 -07 000000610 INF: =================== Cycle #25, Pumping Reagent USM (2) ===================
17-03-17 19:22:12.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:22:12.168 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:22:12.168 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:22:12.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:22:12.328 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:22:12.328 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:22:12.328 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:22:12.458 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:22:12.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:22:12.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:22:12.948 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:22:12.948 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:22:12.948 -07 000000610 INF: =================== Cycle #25 ===================
17-03-17 19:22:13.178 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.969015,
17-03-17 19:22:14.168 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 19:22:14.168 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:22:14.168 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:22:14.188 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:22:14.188 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 19:22:14.188 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:22:14.338 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:22:14.358 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:22:14.358 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:22:14.408 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:22:14.428 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:22:14.428 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:22:14.528 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3) ===================
17-03-17 19:22:14.528 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:22:14.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:22:14.558 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:22:14.558 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:22:14.558 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:22:14.688 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:22:14.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:22:15.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:22:15.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:22:15.628 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 19:22:15.628 -07 000000610 INF: =================== Cycle #25, Pumping Reagent PR2 (3) ===================
17-03-17 19:22:15.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:22:15.788 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:22:15.788 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:22:15.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:22:15.948 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:22:15.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:22:15.948 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:22:16.078 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:22:16.108 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:22:16.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:22:16.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:22:16.568 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:22:16.568 -07 000000610 INF: =================== Cycle #25 ===================
17-03-17 19:22:16.568 -07 000000476 INF: WaitCommand(10000) start
17-03-17 19:22:16.568 -07 000000623 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:22:16.568 -07 000000623 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:22:16.688 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:22:16.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:22:17.788 -07 000000623 INF: AsyncDelayTimer waited 1215ms
17-03-17 19:22:17.788 -07 000000623 INF: LanePump: Xmit /1?\r
17-03-17 19:22:17.818 -07 000000623 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:22:17.818 -07 000000623 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:22:17.948 -07 000000623 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:22:17.988 -07 000000623 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:22:18.548 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.96762,
17-03-17 19:22:19.518 -07 000000623 INF: LanePump: Xmit /1Q\r
17-03-17 19:22:19.908 -07 000000623 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:22:20.328 -07 000000623 INF: LanePump: Xmit /1Q\r
17-03-17 19:22:20.358 -07 000000623 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:22:20.358 -07 000000623 INF: LanePump: Waited 2369 ms for pump motion to complete
17-03-17 19:22:20.358 -07 000000623 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:22:20.358 -07 000000623 INF: ===================  ===================
17-03-17 19:22:21.678 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:22:21.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:22:23.918 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.997626,
17-03-17 19:22:26.578 -07 000000476 INF: WaitCommand(10000) end
17-03-17 19:22:26.578 -07 000000610 INF: =================== Cycle #25, Imaging ===================
17-03-17 19:22:26.578 -07 000000610 INF: Imaging Cycle 25: ScanTilesCommand Cycle 25 time start.
17-03-17 19:22:26.578 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 19:22:26.578 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:22:26.608 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:22:26.608 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 19:22:26.608 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 19:22:26.678 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:22:26.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:22:26.908 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:22:26.928 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:22:26.928 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:22:26.978 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:22:26.998 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:22:26.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:22:26.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:22:26.998 -07 000000478 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 19:22:26.998 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:22:26.998 -07 000000478 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 19:22:26.998 -07 000000501 INF: FPGA: Recv EXLED1ON 
17-03-17 19:22:27.008 -07 000000478 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:22:27.008 -07 000000478 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 19:22:27.008 -07 000000541 INF: FPGA: Recv EXLED1ADCR 23201
17-03-17 19:22:27.018 -07 000000478 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:27.018 -07 000000478 INF: RedLED: Using Red data: Photodiode ADC 23201 --> 7.5 mW (old method), or 205.6 mW (new method). Difference = 198.2 mW
17-03-17 19:22:27.018 -07 000000478 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 19:22:27.018 -07 000000480 INF: FPGA: Recv EXLED1OFF 
17-03-17 19:22:27.028 -07 000000478 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:27.028 -07 000000478 INF: RedLED: LED was on for 20 ms
17-03-17 19:22:27.028 -07 000000478 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 24 ms.
17-03-17 19:22:27.028 -07 000000478 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 19:22:27.028 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:22:27.028 -07 000000478 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 19:22:27.028 -07 000000480 INF: FPGA: Recv EXLED2ON 
17-03-17 19:22:27.038 -07 000000478 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:22:27.038 -07 000000478 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:22:27.038 -07 000000541 INF: FPGA: Recv EXLED1ADCR 2101
17-03-17 19:22:27.048 -07 000000478 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:27.048 -07 000000478 INF: GreenLED: Using Green data: Photodiode ADC 2101 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.6 mW
17-03-17 19:22:27.048 -07 000000478 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 19:22:27.048 -07 000000623 INF: FPGA: Recv EXLED2OFF 
17-03-17 19:22:27.058 -07 000000478 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:27.058 -07 000000478 INF: GreenLED: LED was on for 19 ms
17-03-17 19:22:27.058 -07 000000478 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 26 ms.
17-03-17 19:22:27.058 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:22:27.058 -07 000000541 INF: FPGA: Recv EMCUR 
17-03-17 19:22:27.068 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:22:27.068 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 19:22:27.568 -07 000000478 INF: FPGA: Recv EMOUT
17-03-17 19:22:27.568 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 19:22:27.568 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 19:22:27.568 -07 000000478 INF: FPGA: Recv EMCUR 
17-03-17 19:22:27.578 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:22:27.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:22:27.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.127724044398444. ------
17-03-17 19:22:27.578 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:22:27.578 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17956 mm
17-03-17 19:22:27.578 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:22:27.588 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:22:27.588 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:22:27.588 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:22:27.588 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 39224, sync = True, waitForSettling = False)
17-03-17 19:22:27.588 -07 000000501 INF: Z Motor: Moving to -0.179556 mm, started at -0.127724 mm, distance = -51.83 um
17-03-17 19:22:27.588 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:22:27.588 -07 000000476 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-17 19:22:27.598 -07 000000501 INF: FPGA: Xmit ZDACW 39224\n [Z Motor]
17-03-17 19:22:27.598 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:22:27.608 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:27.608 -07 000000501 INF: FPGA: 'ZDACW 39224' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:22:27.608 -07 000000478 INF: FPGA: Recv YRDPOS 154379
17-03-17 19:22:27.618 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:22:27.618 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:22:27.618 -07 000000476 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:27.618 -07 000000476 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 19:22:27.618 -07 000000476 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:22:27.618 -07 000000433 INF: FPGA: Recv ZDACR 39224
17-03-17 19:22:27.628 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:22:27.628 -07 000000501 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:22:27.628 -07 000000476 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:22:27.788 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:22:27.788 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:22:29.278 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.011254,
17-03-17 19:22:29.308 -07 000000012 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 19:22:29.308 -07 000000476 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1695 ms overall
17-03-17 19:22:29.308 -07 000000476 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:22:29.308 -07 000000476 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24775 steps (15.484 mm). Slippage = 0.017 mm (0.00%).
17-03-17 19:22:29.308 -07 000000476 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1695 ms, distance = 15.468 mm, average velocity = 9.126 mm/sec
17-03-17 19:22:31.678 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:22:31.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:22:32.158 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:32.158 -07 000000626 INF: FPGA: Recv YRDPOS 122697
17-03-17 19:22:32.168 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:32.168 -07 000000476 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:32.188 -07 000000476 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:22:32.188 -07 000000476 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 19:22:32.188 -07 000000476 INF: Y Motor: Moved to 59.9106 after 4598 ms
17-03-17 19:22:32.188 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179556 mm (DAC = 39224)
17-03-17 19:22:32.188 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:32.188 -07 000000476 INF: FPGA: Recv ZSGSRD 37242
17-03-17 19:22:32.198 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:22:32.198 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:32.198 -07 000000626 INF: FPGA: Recv ZSGSRD 37238
17-03-17 19:22:32.208 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:32.208 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:32.208 -07 000000476 INF: FPGA: Recv ZSGSRD 37239
17-03-17 19:22:32.218 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:32.218 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:32.218 -07 000000626 INF: FPGA: Recv ZSGSRD 37233
17-03-17 19:22:32.228 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:32.228 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:32.228 -07 000000626 INF: FPGA: Recv ZSGSRD 37240
17-03-17 19:22:32.238 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:32.238 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:32.238 -07 000000476 INF: FPGA: Recv ZSGSRD 37244
17-03-17 19:22:32.248 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:32.248 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:32.248 -07 000000626 INF: FPGA: Recv ZSGSRD 37242
17-03-17 19:22:32.258 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:32.258 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:32.258 -07 000000478 INF: FPGA: Recv ZSGSRD 37239
17-03-17 19:22:32.268 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:32.268 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:32.268 -07 000000626 INF: FPGA: Recv ZSGSRD 37236
17-03-17 19:22:32.278 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:32.278 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:32.278 -07 000000478 INF: FPGA: Recv ZSGSRD 37241
17-03-17 19:22:32.288 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:32.288 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:22:32.288 -07 000000626 INF: FPGA: Recv ZPIEZORD 33660
17-03-17 19:22:32.298 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:32.298 -07 000000480 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.9 V, since DAC is at 5.985 V. Piezo Error = -7.9 V.
17-03-17 19:22:32.298 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.6 um, Read 10 ADC samples: Avg = 37239 (-178.7 uncal um), Error = 0.9 uncal um, Median = 37240 (-178.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37233 (-178.6 uncal um), Max = 37244 (-178.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:22:32.298 -07 000000480 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37239, posNoise = 5, negNoise = 6
17-03-17 19:22:32.298 -07 000000480 INF: Z Motor: After move to -0.179556, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:22:32.298 -07 000000480 INF: Z Motor: Settle wait time = 4603 ms, measure time = 105 ms (allowed 150 ms), total time = 4708 ms
17-03-17 19:22:32.298 -07 000000480 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:22:32.348 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4760 ms
17-03-17 19:22:32.348 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:22:32.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:22:32.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:22:32.348 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:22:32.348 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:22:32.348 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:22:32.348 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:22:32.348 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:22:32.348 -07 000000433 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:22:32.378 -07 000000433 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 19:22:32.378 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:22:32.378 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:22:32.378 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:22:32.398 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:22:32.398 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 19:22:32.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:22:32.438 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:22:32.638 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:22:32.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:22:32.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:22:32.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-17 19:22:32.678 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:22:32.678 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 19:22:32.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 19:22:32.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:22:32.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:32.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:22:32.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:22:32.878 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:22:32.878 -07 000000618 INF: Image SNR check: start
17-03-17 19:22:32.888 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:22:32.888 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 19:22:32.888 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:22:32.898 -07 000000618 INF: Image SNR check: pass  [peak (Max-Min)=67.40]
17-03-17 19:22:32.898 -07 000000618 INF: Autofocus start
17-03-17 19:22:32.898 -07 000000618 INF: MeasureProfile start
17-03-17 19:22:32.908 -07 000000618 INF: MeasureProfile done
17-03-17 19:22:32.908 -07 000000618 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:22:32.908 -07 000000618 INF: Autofocus finished
17-03-17 19:22:33.088 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:22:33.088 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:22:33.098 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.179554587958171. ----------
17-03-17 19:22:33.098 -07 000000610 INF: Cycle	25	Tile	1	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:22:33.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37721, sync = True, waitForSettling = True)
17-03-17 19:22:33.098 -07 000000610 INF: Z Motor: Moving to -0.172676 mm, started at -0.179555 mm, distance = 6.88 um
17-03-17 19:22:33.098 -07 000000610 INF: FPGA: Xmit ZDACW 37721\n [Z Motor]
17-03-17 19:22:33.098 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:22:33.108 -07 000000610 INF: FPGA: 'ZDACW 37721' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:22:33.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:22:33.108 -07 000000623 INF: FPGA: Recv ZDACR 37721
17-03-17 19:22:33.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:33.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:22:33.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:33.268 -07 000000623 INF: FPGA: Recv ZSGSRD 36166
17-03-17 19:22:33.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:22:33.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:33.278 -07 000000623 INF: FPGA: Recv ZSGSRD 36172
17-03-17 19:22:33.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:33.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:33.288 -07 000000623 INF: FPGA: Recv ZSGSRD 36167
17-03-17 19:22:33.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:33.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:33.298 -07 000000623 INF: FPGA: Recv ZSGSRD 36174
17-03-17 19:22:33.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:33.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:33.308 -07 000000476 INF: FPGA: Recv ZSGSRD 36175
17-03-17 19:22:33.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:33.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:33.318 -07 000000476 INF: FPGA: Recv ZSGSRD 36171
17-03-17 19:22:33.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:33.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:33.328 -07 000000476 INF: FPGA: Recv ZSGSRD 36175
17-03-17 19:22:33.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:33.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:33.338 -07 000000476 INF: FPGA: Recv ZSGSRD 36171
17-03-17 19:22:33.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:33.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:33.348 -07 000000478 INF: FPGA: Recv ZSGSRD 36171
17-03-17 19:22:33.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:33.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:33.358 -07 000000476 INF: FPGA: Recv ZSGSRD 36167
17-03-17 19:22:33.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:33.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:22:33.368 -07 000000623 INF: FPGA: Recv ZPIEZORD 32257
17-03-17 19:22:33.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:33.378 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.756 V. Piezo Error = -8.6 V.
17-03-17 19:22:33.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36171 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36171 (-171.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36166 (-171.8 uncal um), Max = 36175 (-171.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:22:33.378 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36171, posNoise = 4, negNoise = 5
17-03-17 19:22:33.378 -07 000000610 INF: Z Motor: After move to -0.172676, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:22:33.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:22:33.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:22:33.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:22:33.378 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:22:33.378 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:22:33.378 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:22:33.378 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:22:33.378 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:22:33.378 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:22:33.378 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:22:33.378 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:22:33.378 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:22:33.378 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:22:33.388 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:22:33.388 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:22:33.398 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:22:33.398 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:22:33.408 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 19:22:33.408 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:22:33.408 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:22:33.408 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:22:33.418 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 19:22:33.418 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 19:22:33.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 37898 150\n [Camera]
17-03-17 19:22:33.618 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:22:34.018 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:22:34.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:22:34.028 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:22:34.028 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:22:34.028 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2609049928, 0x0, 391868352) start.
17-03-17 19:22:34.028 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:22:34.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:22:34.028 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:22:34.138 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:22:34.138 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1067585584, 0x0, 418435064) start.
17-03-17 19:22:34.218 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37898 786
17-03-17 19:22:34.368 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:22:34.408 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2609049928, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:22:34.408 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:22:34.408 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:34.418 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:22:34.418 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:22:34.518 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1067585584, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:22:34.518 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:22:34.518 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:34.518 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:22:34.528 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-17 19:22:34.558 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:22:34.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:22:34.558 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:22:34.558 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:22:34.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:22:34.558 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:22:34.568 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:22:34.568 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:22:34.568 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:22:34.568 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:22:34.638 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.024884,
17-03-17 19:22:34.748 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:22:34.748 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:22:34.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 37898 150' command took 2 ms to send, 1316 ms to get response, and 1329 ms overall
17-03-17 19:22:34.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:22:34.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172693529390771. ------
17-03-17 19:22:34.758 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17905 mm
17-03-17 19:22:34.758 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:22:34.758 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:22:34.758 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:22:34.758 -07 000000478 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 19:22:34.758 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 39114, sync = True, waitForSettling = False)
17-03-17 19:22:34.758 -07 000000476 INF: Z Motor: Moving to -0.179052 mm, started at -0.172694 mm, distance = -6.36 um
17-03-17 19:22:34.758 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:22:34.768 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:22:34.768 -07 000000476 INF: FPGA: Xmit ZDACW 39114\n [Z Motor]
17-03-17 19:22:34.768 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:22:34.778 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:34.778 -07 000000476 INF: FPGA: 'ZDACW 39114' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:22:34.778 -07 000000012 INF: FPGA: Recv YRDPOS 122697
17-03-17 19:22:34.788 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:22:34.788 -07 000000478 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:34.788 -07 000000478 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:22:34.788 -07 000000478 INF: Y Motor: Moving 1331 steps2
17-03-17 19:22:34.788 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:22:34.798 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:22:34.798 -07 000000012 INF: FPGA: Recv ZDACR 39114
17-03-17 19:22:34.808 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:22:34.808 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:22:34.808 -07 000000476 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 19:22:34.968 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:22:34.968 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:22:34.968 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:34.968 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:22:34.968 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:22:34.968 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:34.968 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:22:34.968 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 19:22:34.968 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:22:34.978 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:22:34.988 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:22:34.988 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 19:22:35.178 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:22:35.178 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:22:35.208 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:35.208 -07 000000012 INF: FPGA: Recv YRDPOS 124381
17-03-17 19:22:35.218 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:22:35.218 -07 000000478 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:35.218 -07 000000478 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 19:22:35.218 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-17 19:22:36.168 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:36.168 -07 000000626 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:22:36.178 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:22:36.178 -07 000000478 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:36.198 -07 000000478 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:22:36.198 -07 000000478 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:22:36.198 -07 000000478 INF: Y Motor: Moved to 60.7334 after 1432 ms (table move)
17-03-17 19:22:36.198 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179052 mm (DAC = 39114)
17-03-17 19:22:36.198 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:36.198 -07 000000012 INF: FPGA: Recv ZSGSRD 37168
17-03-17 19:22:36.208 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:22:36.208 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:36.208 -07 000000478 INF: FPGA: Recv ZSGSRD 37157
17-03-17 19:22:36.218 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:36.218 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:36.218 -07 000000012 INF: FPGA: Recv ZSGSRD 37160
17-03-17 19:22:36.228 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:36.228 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:36.228 -07 000000623 INF: FPGA: Recv ZSGSRD 37161
17-03-17 19:22:36.238 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:36.238 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:36.238 -07 000000478 INF: FPGA: Recv ZSGSRD 37164
17-03-17 19:22:36.248 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:36.248 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:36.248 -07 000000476 INF: FPGA: Recv ZSGSRD 37171
17-03-17 19:22:36.258 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:36.258 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:36.258 -07 000000623 INF: FPGA: Recv ZSGSRD 37162
17-03-17 19:22:36.268 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:36.268 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:36.268 -07 000000476 INF: FPGA: Recv ZSGSRD 37160
17-03-17 19:22:36.278 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:36.278 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:36.278 -07 000000626 INF: FPGA: Recv ZSGSRD 37158
17-03-17 19:22:36.288 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:36.288 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:36.288 -07 000000012 INF: FPGA: Recv ZSGSRD 37159
17-03-17 19:22:36.298 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:36.298 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:22:36.298 -07 000000626 INF: FPGA: Recv ZPIEZORD 33541
17-03-17 19:22:36.308 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:36.308 -07 000000561 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.968 V. Piezo Error = -8.0 V.
17-03-17 19:22:36.308 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.1 um, Read 10 ADC samples: Avg = 37162 (-178.2 uncal um), Error = 0.9 uncal um, Median = 37160 (-178.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37157 (-178.1 uncal um), Max = 37171 (-178.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:22:36.308 -07 000000561 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37162, posNoise = 9, negNoise = 5
17-03-17 19:22:36.308 -07 000000561 INF: Z Motor: After move to -0.179052, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:22:36.308 -07 000000561 INF: Z Motor: Settle wait time = 1437 ms, measure time = 105 ms (allowed 150 ms), total time = 1542 ms
17-03-17 19:22:36.308 -07 000000561 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:22:36.358 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 19:22:36.358 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:22:36.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:22:36.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:22:36.358 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:22:36.358 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:22:36.358 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:22:36.358 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:22:36.368 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:22:36.368 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:22:36.368 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:22:36.368 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:22:36.378 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:22:36.378 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 19:22:36.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:22:36.428 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:22:36.628 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:22:36.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:22:36.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:22:36.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-17 19:22:36.658 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:22:36.668 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 19:22:36.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:22:36.678 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:22:36.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:22:36.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:36.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:22:36.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:22:36.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:22:36.768 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:22:36.768 -07 000000618 INF: Autofocus start
17-03-17 19:22:36.768 -07 000000618 INF: MeasureProfile start
17-03-17 19:22:36.768 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:22:36.778 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:22:36.778 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:22:36.778 -07 000000618 INF: MeasureProfile done
17-03-17 19:22:36.778 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:22:36.778 -07 000000618 INF: Autofocus finished
17-03-17 19:22:36.978 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:22:36.978 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:22:36.978 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.179059923623256. ----------
17-03-17 19:22:36.978 -07 000000610 INF: Cycle	25	Tile	2	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:22:36.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37629, sync = True, waitForSettling = True)
17-03-17 19:22:36.988 -07 000000610 INF: Z Motor: Moving to -0.172255 mm, started at -0.179060 mm, distance = 6.81 um
17-03-17 19:22:36.988 -07 000000610 INF: FPGA: Xmit ZDACW 37629\n [Z Motor]
17-03-17 19:22:36.988 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:22:36.998 -07 000000610 INF: FPGA: 'ZDACW 37629' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:22:36.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:22:36.998 -07 000000433 INF: FPGA: Recv ZDACR 37629
17-03-17 19:22:37.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:37.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:22:37.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:37.158 -07 000000476 INF: FPGA: Recv ZSGSRD 36107
17-03-17 19:22:37.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:22:37.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:37.168 -07 000000626 INF: FPGA: Recv ZSGSRD 36103
17-03-17 19:22:37.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:37.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:37.178 -07 000000012 INF: FPGA: Recv ZSGSRD 36108
17-03-17 19:22:37.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:37.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:37.188 -07 000000478 INF: FPGA: Recv ZSGSRD 36101
17-03-17 19:22:37.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:37.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:37.198 -07 000000626 INF: FPGA: Recv ZSGSRD 36103
17-03-17 19:22:37.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:37.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:37.208 -07 000000476 INF: FPGA: Recv ZSGSRD 36104
17-03-17 19:22:37.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:22:37.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:37.218 -07 000000626 INF: FPGA: Recv ZSGSRD 36105
17-03-17 19:22:37.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:37.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:37.228 -07 000000618 INF: FPGA: Recv ZSGSRD 36104
17-03-17 19:22:37.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:37.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:37.238 -07 000000012 INF: FPGA: Recv ZSGSRD 36104
17-03-17 19:22:37.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:37.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:37.248 -07 000000478 INF: FPGA: Recv ZSGSRD 36106
17-03-17 19:22:37.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:37.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:22:37.258 -07 000000476 INF: FPGA: Recv ZPIEZORD 32121
17-03-17 19:22:37.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:37.268 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.742 V. Piezo Error = -8.8 V.
17-03-17 19:22:37.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36104 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36104 (-171.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36101 (-171.4 uncal um), Max = 36108 (-171.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:22:37.268 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36104, posNoise = 4, negNoise = 3
17-03-17 19:22:37.268 -07 000000610 INF: Z Motor: After move to -0.172255, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:22:37.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:22:37.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:22:37.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:22:37.268 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:22:37.268 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:22:37.268 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:22:37.268 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:22:37.268 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:22:37.268 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:22:37.268 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:22:37.268 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:22:37.268 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:22:37.268 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:22:37.278 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:22:37.278 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:22:37.278 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:22:37.278 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:22:37.288 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:22:37.288 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:22:37.288 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:22:37.288 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:22:37.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 37805 150\n [Camera]
17-03-17 19:22:37.488 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:22:37.898 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:22:37.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:22:37.898 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:22:37.898 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:22:37.898 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1103007848, 0x0, 391868352) start.
17-03-17 19:22:37.898 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:22:37.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:22:37.898 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:22:37.898 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:22:37.898 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1138430112, 0x0, 418435064) start.
17-03-17 19:22:38.088 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37805 789
17-03-17 19:22:38.238 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:22:38.288 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1138430112, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 19:22:38.288 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:22:38.288 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:38.288 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1103007848, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:22:38.288 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:22:38.288 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:38.298 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:22:38.298 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:22:38.298 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:22:38.308 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:22:38.428 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:22:38.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:22:38.428 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:22:38.428 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:22:38.428 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:22:38.438 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:22:38.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:22:38.438 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:22:38.548 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:22:38.548 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:22:38.618 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-17 19:22:38.618 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:22:38.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 37805 150' command took 2 ms to send, 1318 ms to get response, and 1328 ms overall
17-03-17 19:22:38.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:22:38.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.172263107177273. ------
17-03-17 19:22:38.628 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17881 mm
17-03-17 19:22:38.628 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:22:38.628 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:22:38.628 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:22:38.628 -07 000000623 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 19:22:38.628 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 39062, sync = True, waitForSettling = False)
17-03-17 19:22:38.628 -07 000000541 INF: Z Motor: Moving to -0.178814 mm, started at -0.172263 mm, distance = -6.55 um
17-03-17 19:22:38.638 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:38.638 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:22:38.638 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:22:38.638 -07 000000626 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:22:38.648 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:22:38.648 -07 000000541 INF: FPGA: Xmit ZDACW 39062\n [Z Motor]
17-03-17 19:22:38.648 -07 000000623 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:38.648 -07 000000623 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:22:38.648 -07 000000623 INF: Y Motor: Moving 1343 steps-20
17-03-17 19:22:38.648 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:22:38.658 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:22:38.658 -07 000000541 INF: FPGA: 'ZDACW 39062' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:22:38.668 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:22:38.678 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:22:38.678 -07 000000626 INF: FPGA: Recv ZDACR 39062
17-03-17 19:22:38.688 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:22:38.688 -07 000000541 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 19:22:38.828 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:22:38.828 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:22:38.828 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:38.838 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:22:38.838 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:22:38.858 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:22:38.858 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 19:22:38.948 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 19:22:38.948 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:22:38.948 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:38.948 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:22:38.958 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-17 19:22:39.038 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 19:22:39.038 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 19:22:39.078 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:39.078 -07 000000541 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:22:39.088 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:22:39.088 -07 000000623 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:39.088 -07 000000623 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:22:39.088 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 19:22:39.998 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.014009,
17-03-17 19:22:40.038 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:40.038 -07 000000541 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:22:40.048 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:22:40.048 -07 000000623 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:40.068 -07 000000623 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:22:40.068 -07 000000623 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:22:40.068 -07 000000623 INF: Y Motor: Moved to 61.5640 after 1434 ms (table move)
17-03-17 19:22:40.068 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178814 mm (DAC = 39062)
17-03-17 19:22:40.068 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:40.068 -07 000000618 INF: FPGA: Recv ZSGSRD 37125
17-03-17 19:22:40.078 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:22:40.078 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:40.078 -07 000000476 INF: FPGA: Recv ZSGSRD 37119
17-03-17 19:22:40.088 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:40.088 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:40.088 -07 000000618 INF: FPGA: Recv ZSGSRD 37119
17-03-17 19:22:40.098 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:40.098 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:40.098 -07 000000433 INF: FPGA: Recv ZSGSRD 37124
17-03-17 19:22:40.108 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:40.108 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:40.108 -07 000000618 INF: FPGA: Recv ZSGSRD 37123
17-03-17 19:22:40.118 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:40.118 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:40.118 -07 000000433 INF: FPGA: Recv ZSGSRD 37129
17-03-17 19:22:40.128 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:40.128 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:40.128 -07 000000623 INF: FPGA: Recv ZSGSRD 37130
17-03-17 19:22:40.138 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:40.138 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:40.138 -07 000000433 INF: FPGA: Recv ZSGSRD 37126
17-03-17 19:22:40.148 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:40.148 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:40.148 -07 000000618 INF: FPGA: Recv ZSGSRD 37119
17-03-17 19:22:40.158 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:40.158 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:40.158 -07 000000476 INF: FPGA: Recv ZSGSRD 37119
17-03-17 19:22:40.168 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:40.168 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:22:40.168 -07 000000618 INF: FPGA: Recv ZPIEZORD 33536
17-03-17 19:22:40.178 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:40.178 -07 000000012 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.960 V. Piezo Error = -8.0 V.
17-03-17 19:22:40.178 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37123 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37124 (-177.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37119 (-177.9 uncal um), Max = 37130 (-178.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:22:40.178 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37123, posNoise = 7, negNoise = 4
17-03-17 19:22:40.178 -07 000000012 INF: Z Motor: After move to -0.178814, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:22:40.178 -07 000000012 INF: Z Motor: Settle wait time = 1438 ms, measure time = 104 ms (allowed 150 ms), total time = 1542 ms
17-03-17 19:22:40.178 -07 000000012 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:22:40.228 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 19:22:40.228 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:22:40.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:22:40.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:22:40.228 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:22:40.238 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:22:40.238 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:22:40.238 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:22:40.238 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:22:40.238 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:22:40.238 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:22:40.238 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:22:40.248 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:22:40.248 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:22:40.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:22:40.288 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:22:40.488 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:22:40.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:22:40.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:22:40.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608800072, 0x0, 559484976) start.
17-03-17 19:22:40.538 -07 000000626 INF: FPGA: Recv @CAMSNAP 282
17-03-17 19:22:40.538 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 19:22:40.538 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 287 ms overall
17-03-17 19:22:40.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608800072, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:22:40.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:40.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:22:40.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:22:40.638 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:22:40.638 -07 000000476 INF: Autofocus start
17-03-17 19:22:40.638 -07 000000476 INF: MeasureProfile start
17-03-17 19:22:40.638 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:22:40.648 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:22:40.648 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:22:40.658 -07 000000476 INF: MeasureProfile done
17-03-17 19:22:40.658 -07 000000476 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:22:40.658 -07 000000476 INF: Autofocus finished
17-03-17 19:22:40.848 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:22:40.848 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:22:40.848 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178809379349727. ----------
17-03-17 19:22:40.848 -07 000000610 INF: Cycle	25	Tile	3	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:22:40.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37595, sync = True, waitForSettling = True)
17-03-17 19:22:40.858 -07 000000610 INF: Z Motor: Moving to -0.172099 mm, started at -0.178809 mm, distance = 6.71 um
17-03-17 19:22:40.858 -07 000000610 INF: FPGA: Xmit ZDACW 37595\n [Z Motor]
17-03-17 19:22:40.858 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:22:40.868 -07 000000610 INF: FPGA: 'ZDACW 37595' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:22:40.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:22:40.868 -07 000000618 INF: FPGA: Recv ZDACR 37595
17-03-17 19:22:40.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:40.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:22:41.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:41.028 -07 000000618 INF: FPGA: Recv ZSGSRD 36081
17-03-17 19:22:41.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:22:41.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:41.038 -07 000000618 INF: FPGA: Recv ZSGSRD 36078
17-03-17 19:22:41.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:41.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:41.048 -07 000000501 INF: FPGA: Recv ZSGSRD 36077
17-03-17 19:22:41.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:41.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:41.058 -07 000000618 INF: FPGA: Recv ZSGSRD 36087
17-03-17 19:22:41.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:41.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:41.068 -07 000000541 INF: FPGA: Recv ZSGSRD 36080
17-03-17 19:22:41.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:41.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:41.078 -07 000000476 INF: FPGA: Recv ZSGSRD 36080
17-03-17 19:22:41.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:41.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:41.088 -07 000000012 INF: FPGA: Recv ZSGSRD 36075
17-03-17 19:22:41.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:41.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:41.098 -07 000000541 INF: FPGA: Recv ZSGSRD 36086
17-03-17 19:22:41.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:41.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:41.108 -07 000000501 INF: FPGA: Recv ZSGSRD 36082
17-03-17 19:22:41.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:41.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:41.118 -07 000000476 INF: FPGA: Recv ZSGSRD 36078
17-03-17 19:22:41.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:41.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:22:41.128 -07 000000623 INF: FPGA: Recv ZPIEZORD 32125
17-03-17 19:22:41.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:41.138 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.737 V. Piezo Error = -8.7 V.
17-03-17 19:22:41.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36080 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36080 (-171.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36075 (-171.2 uncal um), Max = 36087 (-171.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:22:41.138 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36080, posNoise = 7, negNoise = 5
17-03-17 19:22:41.138 -07 000000610 INF: Z Motor: After move to -0.172099, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:22:41.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:22:41.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:22:41.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:22:41.138 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:22:41.138 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:22:41.138 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:22:41.138 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:22:41.138 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:22:41.138 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:22:41.138 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:22:41.138 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:22:41.138 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:22:41.138 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:22:41.148 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:22:41.148 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:22:41.148 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:22:41.148 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:22:41.158 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:22:41.158 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:22:41.158 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:22:41.158 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:22:41.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 37771 150\n [Camera]
17-03-17 19:22:41.368 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:22:41.678 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:22:41.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:22:41.768 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:22:41.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:22:41.768 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:22:41.768 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:22:41.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:22:41.778 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:22:41.778 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:22:41.778 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:22:41.778 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:22:41.778 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:22:41.958 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37771 786
17-03-17 19:22:42.108 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:22:42.168 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:22:42.168 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:22:42.168 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:42.168 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:22:42.168 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:22:42.178 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:22:42.178 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:22:42.178 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:42.178 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:22:42.188 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:22:42.298 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:22:42.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:22:42.308 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:22:42.308 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:22:42.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:22:42.308 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:22:42.418 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:22:42.418 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:22:42.418 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:22:42.418 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:22:42.498 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:22:42.498 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:22:42.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 37771 150' command took 2 ms to send, 1321 ms to get response, and 1329 ms overall
17-03-17 19:22:42.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:22:42.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.17210892608587. ------
17-03-17 19:22:42.498 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:22:42.498 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17833 mm
17-03-17 19:22:42.498 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:22:42.498 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:22:42.498 -07 000000626 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 19:22:42.498 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 38956, sync = True, waitForSettling = False)
17-03-17 19:22:42.498 -07 000000541 INF: Z Motor: Moving to -0.178329 mm, started at -0.172109 mm, distance = -6.22 um
17-03-17 19:22:42.498 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:22:42.508 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:22:42.508 -07 000000541 INF: FPGA: Xmit ZDACW 38956\n [Z Motor]
17-03-17 19:22:42.508 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 19:22:42.518 -07 000000541 INF: FPGA: 'ZDACW 38956' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:22:42.518 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:22:42.528 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:42.528 -07 000000501 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:22:42.538 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:22:42.538 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 19:22:42.538 -07 000000626 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:42.538 -07 000000561 INF: FPGA: Recv ZDACR 38956
17-03-17 19:22:42.538 -07 000000626 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:22:42.538 -07 000000626 INF: Y Motor: Moving 1341 steps-18
17-03-17 19:22:42.548 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:22:42.548 -07 000000541 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 19:22:42.548 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:22:42.718 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:22:42.718 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 19:22:42.818 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:22:42.818 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:22:42.818 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:42.818 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 19:22:42.818 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 19:22:42.818 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:42.818 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:22:42.828 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:22:42.828 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 19:22:42.828 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-17 19:22:42.918 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 19:22:42.918 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 19:22:42.958 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:42.958 -07 000000433 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:22:42.968 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:22:42.968 -07 000000626 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:42.968 -07 000000626 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:22:42.968 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.839 mm, average velocity = 2.201 mm/sec
17-03-17 19:22:43.918 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:43.918 -07 000000501 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:22:43.928 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:22:43.928 -07 000000626 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:43.938 -07 000000626 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:22:43.938 -07 000000626 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:22:43.938 -07 000000626 INF: Y Motor: Moved to 62.3955 after 1440 ms (table move)
17-03-17 19:22:43.948 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178329 mm (DAC = 38956)
17-03-17 19:22:43.948 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:43.948 -07 000000626 INF: FPGA: Recv ZSGSRD 37054
17-03-17 19:22:43.958 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:22:43.958 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:43.958 -07 000000478 INF: FPGA: Recv ZSGSRD 37049
17-03-17 19:22:43.968 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:43.968 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:43.968 -07 000000475 INF: FPGA: Recv ZSGSRD 37057
17-03-17 19:22:43.978 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:43.978 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:43.978 -07 000000478 INF: FPGA: Recv ZSGSRD 37054
17-03-17 19:22:43.988 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:43.988 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:43.988 -07 000000561 INF: FPGA: Recv ZSGSRD 37040
17-03-17 19:22:43.998 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:43.998 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:43.998 -07 000000475 INF: FPGA: Recv ZSGSRD 37043
17-03-17 19:22:44.008 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:44.008 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:44.008 -07 000000478 INF: FPGA: Recv ZSGSRD 37053
17-03-17 19:22:44.018 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:44.018 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:44.018 -07 000000561 INF: FPGA: Recv ZSGSRD 37043
17-03-17 19:22:44.028 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:44.028 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:44.028 -07 000000478 INF: FPGA: Recv ZSGSRD 37048
17-03-17 19:22:44.038 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:44.038 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:44.038 -07 000000478 INF: FPGA: Recv ZSGSRD 37050
17-03-17 19:22:44.048 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:44.048 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:22:44.048 -07 000000478 INF: FPGA: Recv ZPIEZORD 33433
17-03-17 19:22:44.058 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:44.058 -07 000000618 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.944 V. Piezo Error = -8.0 V.
17-03-17 19:22:44.058 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.3 um, Read 10 ADC samples: Avg = 37049 (-177.4 uncal um), Error = 0.9 uncal um, Median = 37050 (-177.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 37040 (-177.4 uncal um), Max = 37057 (-177.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:22:44.058 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37049, posNoise = 8, negNoise = 9
17-03-17 19:22:44.058 -07 000000618 INF: Z Motor: After move to -0.178329, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:22:44.058 -07 000000618 INF: Z Motor: Settle wait time = 1443 ms, measure time = 108 ms (allowed 150 ms), total time = 1551 ms
17-03-17 19:22:44.058 -07 000000618 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:22:44.108 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 19:22:44.108 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:22:44.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:22:44.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:22:44.108 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:22:44.108 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:22:44.108 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:22:44.108 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:22:44.108 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:22:44.108 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:22:44.118 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:22:44.118 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:22:44.128 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:22:44.128 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:22:44.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:22:44.168 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:22:44.368 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:22:44.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:22:44.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:22:44.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585694368, 0x0, 559484976) start.
17-03-17 19:22:44.408 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:22:44.408 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 19:22:44.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 19:22:44.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585694368, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:22:44.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:44.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:22:44.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:22:44.508 -07 000000433 INF: Autofocus start
17-03-17 19:22:44.508 -07 000000433 INF: MeasureProfile start
17-03-17 19:22:44.508 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:22:44.508 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:22:44.518 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:22:44.518 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:22:44.518 -07 000000433 INF: MeasureProfile done
17-03-17 19:22:44.518 -07 000000433 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:22:44.518 -07 000000433 INF: Autofocus finished
17-03-17 19:22:44.718 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:22:44.718 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:22:44.718 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.178333987651237. ----------
17-03-17 19:22:44.728 -07 000000610 INF: Cycle	25	Tile	4	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:22:44.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37453, sync = True, waitForSettling = True)
17-03-17 19:22:44.728 -07 000000610 INF: Z Motor: Moving to -0.171449 mm, started at -0.178334 mm, distance = 6.89 um
17-03-17 19:22:44.728 -07 000000610 INF: FPGA: Xmit ZDACW 37453\n [Z Motor]
17-03-17 19:22:44.728 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:22:44.738 -07 000000610 INF: FPGA: 'ZDACW 37453' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:22:44.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:22:44.738 -07 000000501 INF: FPGA: Recv ZDACR 37453
17-03-17 19:22:44.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:44.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:22:44.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:44.898 -07 000000475 INF: FPGA: Recv ZSGSRD 35977
17-03-17 19:22:44.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:22:44.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:44.908 -07 000000561 INF: FPGA: Recv ZSGSRD 35979
17-03-17 19:22:44.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:44.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:44.918 -07 000000475 INF: FPGA: Recv ZSGSRD 35977
17-03-17 19:22:44.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:44.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:44.928 -07 000000618 INF: FPGA: Recv ZSGSRD 35979
17-03-17 19:22:44.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:44.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:44.938 -07 000000475 INF: FPGA: Recv ZSGSRD 35982
17-03-17 19:22:44.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:44.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:44.948 -07 000000618 INF: FPGA: Recv ZSGSRD 35974
17-03-17 19:22:44.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:44.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:44.958 -07 000000475 INF: FPGA: Recv ZSGSRD 35980
17-03-17 19:22:44.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:44.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:44.968 -07 000000478 INF: FPGA: Recv ZSGSRD 35979
17-03-17 19:22:44.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:44.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:44.978 -07 000000433 INF: FPGA: Recv ZSGSRD 35977
17-03-17 19:22:44.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:44.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:44.988 -07 000000478 INF: FPGA: Recv ZSGSRD 35976
17-03-17 19:22:44.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:44.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:22:44.998 -07 000000475 INF: FPGA: Recv ZPIEZORD 31978
17-03-17 19:22:45.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:45.008 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.715 V. Piezo Error = -8.8 V.
17-03-17 19:22:45.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35978 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35978 (-170.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35974 (-170.5 uncal um), Max = 35982 (-170.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:22:45.008 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35978, posNoise = 4, negNoise = 4
17-03-17 19:22:45.008 -07 000000610 INF: Z Motor: After move to -0.171449, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:22:45.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:22:45.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:22:45.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:22:45.008 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:22:45.008 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:22:45.008 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:22:45.008 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:22:45.008 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:22:45.008 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:22:45.008 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:22:45.008 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:22:45.008 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:22:45.008 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:22:45.018 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:22:45.018 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:22:45.018 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:22:45.018 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:22:45.018 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:22:45.018 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:22:45.028 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:22:45.028 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:22:45.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 37630 150\n [Camera]
17-03-17 19:22:45.228 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:22:45.358 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.03576,
17-03-17 19:22:45.628 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:22:45.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:22:45.628 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:22:45.638 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:22:45.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:22:45.638 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:22:45.638 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:22:45.638 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:22:45.638 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:22:45.638 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:22:45.828 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37630 786
17-03-17 19:22:45.978 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:22:46.008 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:22:46.008 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:22:46.008 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:46.018 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 19:22:46.018 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 19:22:46.018 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:46.018 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:22:46.018 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:22:46.018 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:22:46.028 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:22:46.168 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:22:46.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:22:46.168 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:22:46.168 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:22:46.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:22:46.168 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:22:46.168 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:22:46.168 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:22:46.168 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1059328048, 0x0, 418435064) start.
17-03-17 19:22:46.168 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:22:46.358 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:22:46.358 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:22:46.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 37630 150' command took 2 ms to send, 1326 ms to get response, and 1331 ms overall
17-03-17 19:22:46.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:22:46.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.171453656447411. ------
17-03-17 19:22:46.368 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:22:46.368 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17810 mm
17-03-17 19:22:46.368 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:22:46.368 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:22:46.368 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:22:46.368 -07 000000541 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 19:22:46.368 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38905, sync = True, waitForSettling = False)
17-03-17 19:22:46.368 -07 000000480 INF: Z Motor: Moving to -0.178096 mm, started at -0.171454 mm, distance = -6.64 um
17-03-17 19:22:46.378 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:22:46.378 -07 000000480 INF: FPGA: Xmit ZDACW 38905\n [Z Motor]
17-03-17 19:22:46.378 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:22:46.388 -07 000000480 INF: FPGA: 'ZDACW 38905' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:22:46.388 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:22:46.388 -07 000000012 INF: FPGA: Recv ZDACR 38905
17-03-17 19:22:46.398 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:46.398 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:46.398 -07 000000480 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 19:22:46.398 -07 000000475 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:22:46.408 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 19:22:46.408 -07 000000541 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:46.408 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:22:46.408 -07 000000541 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:22:46.408 -07 000000541 INF: Y Motor: Moving 1339 steps-15
17-03-17 19:22:46.418 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:22:46.568 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1059328048, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:22:46.568 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:22:46.568 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:46.568 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:22:46.568 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:22:46.568 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:46.568 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:22:46.578 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:22:46.578 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:22:46.578 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 19:22:46.608 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:22:46.608 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-17 19:22:46.678 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:22:46.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:22:46.788 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 19:22:46.788 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 19:22:46.828 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:46.828 -07 000000478 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:22:46.838 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:22:46.838 -07 000000541 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:46.838 -07 000000541 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:22:46.838 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.174 mm/sec
17-03-17 19:22:47.788 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:47.788 -07 000000012 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:22:47.798 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:22:47.798 -07 000000541 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:47.818 -07 000000541 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:22:47.818 -07 000000541 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:22:47.818 -07 000000541 INF: Y Motor: Moved to 63.2241 after 1444 ms (table move)
17-03-17 19:22:47.818 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178096 mm (DAC = 38905)
17-03-17 19:22:47.818 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:47.818 -07 000000478 INF: FPGA: Recv ZSGSRD 37006
17-03-17 19:22:47.828 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:22:47.828 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:47.828 -07 000000476 INF: FPGA: Recv ZSGSRD 37007
17-03-17 19:22:47.838 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:47.838 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:47.838 -07 000000478 INF: FPGA: Recv ZSGSRD 37010
17-03-17 19:22:47.848 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:47.848 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:47.848 -07 000000561 INF: FPGA: Recv ZSGSRD 37020
17-03-17 19:22:47.858 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:47.858 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:47.858 -07 000000623 INF: FPGA: Recv ZSGSRD 37013
17-03-17 19:22:47.868 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:47.868 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:47.868 -07 000000012 INF: FPGA: Recv ZSGSRD 37016
17-03-17 19:22:47.878 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:47.878 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:47.878 -07 000000478 INF: FPGA: Recv ZSGSRD 37018
17-03-17 19:22:47.888 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:47.888 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:47.888 -07 000000012 INF: FPGA: Recv ZSGSRD 37011
17-03-17 19:22:47.898 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:47.898 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:47.898 -07 000000478 INF: FPGA: Recv ZSGSRD 37010
17-03-17 19:22:47.908 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:47.908 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:47.908 -07 000000623 INF: FPGA: Recv ZSGSRD 37010
17-03-17 19:22:47.918 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:47.918 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:22:47.918 -07 000000478 INF: FPGA: Recv ZPIEZORD 33382
17-03-17 19:22:47.928 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:22:47.928 -07 000000618 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.937 V. Piezo Error = -8.1 V.
17-03-17 19:22:47.928 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37012 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37010 (-177.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37006 (-177.2 uncal um), Max = 37020 (-177.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:22:47.928 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37012, posNoise = 8, negNoise = 6
17-03-17 19:22:47.928 -07 000000618 INF: Z Motor: After move to -0.178096, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:22:47.928 -07 000000618 INF: Z Motor: Settle wait time = 1447 ms, measure time = 105 ms (allowed 150 ms), total time = 1552 ms
17-03-17 19:22:47.928 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:22:47.978 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 19:22:47.978 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:22:47.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:22:47.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:22:47.978 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:22:47.978 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:22:47.978 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:22:47.978 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:22:47.978 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:22:47.978 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:22:47.978 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:22:47.978 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:22:47.998 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:22:47.998 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:22:47.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:22:48.048 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:22:48.248 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:22:48.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:22:48.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:22:48.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2604775752, 0x0, 559484976) start.
17-03-17 19:22:48.288 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:22:48.288 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 19:22:48.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 19:22:48.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2604775752, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:22:48.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:48.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:22:48.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:22:48.388 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:22:48.388 -07 000000478 INF: Autofocus start
17-03-17 19:22:48.388 -07 000000478 INF: MeasureProfile start
17-03-17 19:22:48.388 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:22:48.398 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:22:48.398 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:22:48.398 -07 000000478 INF: MeasureProfile done
17-03-17 19:22:48.398 -07 000000478 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 19:22:48.398 -07 000000478 INF: Autofocus finished
17-03-17 19:22:48.598 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:22:48.598 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:22:48.598 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.178096291801991. ----------
17-03-17 19:22:48.598 -07 000000610 INF: Cycle	25	Tile	5	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:22:48.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37348, sync = True, waitForSettling = True)
17-03-17 19:22:48.608 -07 000000610 INF: Z Motor: Moving to -0.170968 mm, started at -0.178096 mm, distance = 7.13 um
17-03-17 19:22:48.608 -07 000000610 INF: FPGA: Xmit ZDACW 37348\n [Z Motor]
17-03-17 19:22:48.608 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 19:22:48.618 -07 000000610 INF: FPGA: 'ZDACW 37348' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:48.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:22:48.618 -07 000000618 INF: FPGA: Recv ZDACR 37348
17-03-17 19:22:48.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:48.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:22:48.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:48.778 -07 000000478 INF: FPGA: Recv ZSGSRD 35905
17-03-17 19:22:48.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:22:48.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:48.788 -07 000000618 INF: FPGA: Recv ZSGSRD 35896
17-03-17 19:22:48.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:48.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:48.798 -07 000000623 INF: FPGA: Recv ZSGSRD 35906
17-03-17 19:22:48.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:48.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:48.808 -07 000000623 INF: FPGA: Recv ZSGSRD 35903
17-03-17 19:22:48.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:48.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:48.818 -07 000000623 INF: FPGA: Recv ZSGSRD 35906
17-03-17 19:22:48.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:48.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:48.828 -07 000000623 INF: FPGA: Recv ZSGSRD 35902
17-03-17 19:22:48.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:48.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:48.838 -07 000000478 INF: FPGA: Recv ZSGSRD 35906
17-03-17 19:22:48.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:48.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:48.848 -07 000000478 INF: FPGA: Recv ZSGSRD 35904
17-03-17 19:22:48.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:48.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:48.858 -07 000000478 INF: FPGA: Recv ZSGSRD 35900
17-03-17 19:22:48.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:48.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:48.868 -07 000000623 INF: FPGA: Recv ZSGSRD 35906
17-03-17 19:22:48.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:48.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:22:48.878 -07 000000623 INF: FPGA: Recv ZPIEZORD 31880
17-03-17 19:22:48.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:48.888 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -8.9 V.
17-03-17 19:22:48.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35903 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35904 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35896 (-170.0 uncal um), Max = 35906 (-170.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:22:48.888 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35903, posNoise = 3, negNoise = 7
17-03-17 19:22:48.888 -07 000000610 INF: Z Motor: After move to -0.170968, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:22:48.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:22:48.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:22:48.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:22:48.888 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:22:48.888 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:22:48.888 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:22:48.888 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:22:48.888 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:22:48.888 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:22:48.888 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:22:48.888 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:22:48.888 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:22:48.888 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:22:48.888 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:22:48.888 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:22:48.898 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:22:48.898 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:22:48.898 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:22:48.898 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:22:48.908 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:22:48.908 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:22:48.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 37525 150\n [Camera]
17-03-17 19:22:49.108 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:22:49.508 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:22:49.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:22:49.508 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:22:49.508 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:22:49.508 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1094750312, 0x0, 391868352) start.
17-03-17 19:22:49.508 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:22:49.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:22:49.508 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:22:49.638 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:22:49.638 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:22:49.698 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37525 786
17-03-17 19:22:49.848 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:22:49.888 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1094750312, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:22:49.888 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:22:49.888 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:49.898 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:22:49.898 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:22:50.008 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:22:50.018 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:22:50.018 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:50.018 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:22:50.018 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 512 ms.
17-03-17 19:22:50.038 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:22:50.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:22:50.048 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:22:50.048 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:22:50.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:22:50.048 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:22:50.048 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:22:50.048 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:22:50.068 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:22:50.068 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1059328048, 0x0, 391868352) start.
17-03-17 19:22:50.238 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:22:50.238 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:22:50.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 37525 150' command took 2 ms to send, 1323 ms to get response, and 1331 ms overall
17-03-17 19:22:50.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:22:50.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170971840536779. ------
17-03-17 19:22:50.238 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:22:50.238 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17739 mm
17-03-17 19:22:50.238 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:22:50.248 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:22:50.248 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 19:22:50.248 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:22:50.248 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38750, sync = True, waitForSettling = False)
17-03-17 19:22:50.248 -07 000000623 INF: Z Motor: Moving to -0.177386 mm, started at -0.170972 mm, distance = -6.41 um
17-03-17 19:22:50.248 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:22:50.248 -07 000000626 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 19:22:50.258 -07 000000623 INF: FPGA: Xmit ZDACW 38750\n [Z Motor]
17-03-17 19:22:50.258 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:22:50.268 -07 000000623 INF: FPGA: 'ZDACW 38750' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:22:50.268 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:50.268 -07 000000475 INF: FPGA: Recv YRDPOS 129484
17-03-17 19:22:50.278 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:22:50.278 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:22:50.278 -07 000000626 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:50.278 -07 000000618 INF: FPGA: Recv ZDACR 38750
17-03-17 19:22:50.278 -07 000000626 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:22:50.278 -07 000000626 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:22:50.288 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:22:50.288 -07 000000623 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 19:22:50.288 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:22:50.428 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:22:50.428 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:22:50.428 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:50.438 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:22:50.438 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:22:50.438 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1059328048, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:22:50.438 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:22:50.438 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:50.448 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:22:50.448 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:22:50.448 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:22:50.448 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 19:22:50.658 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:22:50.658 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 19:22:50.698 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:50.698 -07 000000478 INF: FPGA: Recv YRDPOS 131188
17-03-17 19:22:50.708 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:22:50.708 -07 000000626 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:50.708 -07 000000626 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 19:22:50.708 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.838 mm, average velocity = 2.178 mm/sec
17-03-17 19:22:50.718 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.015368,
17-03-17 19:22:51.658 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:51.658 -07 000000480 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:22:51.668 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:22:51.668 -07 000000626 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:51.678 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:22:51.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:22:51.688 -07 000000626 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:22:51.688 -07 000000626 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:22:51.688 -07 000000626 INF: Y Motor: Moved to 64.0571 after 1435 ms (table move)
17-03-17 19:22:51.688 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177386 mm (DAC = 38750)
17-03-17 19:22:51.688 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:51.688 -07 000000431 INF: FPGA: Recv ZSGSRD 36897
17-03-17 19:22:51.698 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:22:51.708 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:51.708 -07 000000431 INF: FPGA: Recv ZSGSRD 36904
17-03-17 19:22:51.718 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:22:51.718 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:51.718 -07 000000478 INF: FPGA: Recv ZSGSRD 36908
17-03-17 19:22:51.728 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:51.728 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:51.728 -07 000000541 INF: FPGA: Recv ZSGSRD 36898
17-03-17 19:22:51.738 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:51.738 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:51.738 -07 000000431 INF: FPGA: Recv ZSGSRD 36908
17-03-17 19:22:51.748 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:51.748 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:51.748 -07 000000541 INF: FPGA: Recv ZSGSRD 36898
17-03-17 19:22:51.758 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:51.758 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:51.758 -07 000000431 INF: FPGA: Recv ZSGSRD 36896
17-03-17 19:22:51.768 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:51.768 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:51.768 -07 000000478 INF: FPGA: Recv ZSGSRD 36907
17-03-17 19:22:51.778 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:51.778 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:51.778 -07 000000476 INF: FPGA: Recv ZSGSRD 36903
17-03-17 19:22:51.788 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:51.788 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:51.788 -07 000000478 INF: FPGA: Recv ZSGSRD 36906
17-03-17 19:22:51.798 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:51.798 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:22:51.798 -07 000000480 INF: FPGA: Recv ZPIEZORD 33243
17-03-17 19:22:51.808 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:51.808 -07 000000433 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.913 V. Piezo Error = -8.1 V.
17-03-17 19:22:51.808 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36902 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36904 (-176.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36896 (-176.5 uncal um), Max = 36908 (-176.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:22:51.808 -07 000000433 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36902, posNoise = 6, negNoise = 6
17-03-17 19:22:51.808 -07 000000433 INF: Z Motor: After move to -0.177386, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:22:51.808 -07 000000433 INF: Z Motor: Settle wait time = 1438 ms, measure time = 117 ms (allowed 150 ms), total time = 1555 ms
17-03-17 19:22:51.808 -07 000000433 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 19:22:51.848 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 19:22:51.848 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:22:51.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:22:51.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:22:51.848 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:22:51.848 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:22:51.858 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:22:51.858 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:22:51.858 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:22:51.858 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:22:51.858 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:22:51.858 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:22:51.868 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:22:51.868 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:22:51.878 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:22:51.918 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:22:52.118 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:22:52.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:22:52.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:22:52.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) start.
17-03-17 19:22:52.158 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:22:52.158 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:22:52.158 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 19:22:52.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 19:22:52.248 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:52.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:22:52.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 19:22:52.258 -07 000000551 INF: Autofocus start
17-03-17 19:22:52.258 -07 000000551 INF: MeasureProfile start
17-03-17 19:22:52.258 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:22:52.258 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:22:52.268 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:22:52.268 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:22:52.268 -07 000000551 INF: MeasureProfile done
17-03-17 19:22:52.268 -07 000000551 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:22:52.268 -07 000000551 INF: Autofocus finished
17-03-17 19:22:52.468 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:22:52.468 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:22:52.468 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.177389628466398. ----------
17-03-17 19:22:52.468 -07 000000610 INF: Cycle	25	Tile	6	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:22:52.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37265, sync = True, waitForSettling = True)
17-03-17 19:22:52.478 -07 000000610 INF: Z Motor: Moving to -0.170588 mm, started at -0.177390 mm, distance = 6.80 um
17-03-17 19:22:52.478 -07 000000610 INF: FPGA: Xmit ZDACW 37265\n [Z Motor]
17-03-17 19:22:52.478 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:22:52.488 -07 000000610 INF: FPGA: 'ZDACW 37265' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:22:52.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:22:52.488 -07 000000480 INF: FPGA: Recv ZDACR 37265
17-03-17 19:22:52.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:52.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:22:52.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:52.648 -07 000000618 INF: FPGA: Recv ZSGSRD 35844
17-03-17 19:22:52.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:22:52.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:52.658 -07 000000480 INF: FPGA: Recv ZSGSRD 35851
17-03-17 19:22:52.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:52.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:52.668 -07 000000618 INF: FPGA: Recv ZSGSRD 35842
17-03-17 19:22:52.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:52.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:52.678 -07 000000618 INF: FPGA: Recv ZSGSRD 35842
17-03-17 19:22:52.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:52.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:52.688 -07 000000480 INF: FPGA: Recv ZSGSRD 35844
17-03-17 19:22:52.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:52.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:52.698 -07 000000551 INF: FPGA: Recv ZSGSRD 35847
17-03-17 19:22:52.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:52.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:52.708 -07 000000551 INF: FPGA: Recv ZSGSRD 35851
17-03-17 19:22:52.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:52.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:52.718 -07 000000551 INF: FPGA: Recv ZSGSRD 35846
17-03-17 19:22:52.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:52.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:52.728 -07 000000618 INF: FPGA: Recv ZSGSRD 35844
17-03-17 19:22:52.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:52.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:52.738 -07 000000541 INF: FPGA: Recv ZSGSRD 35843
17-03-17 19:22:52.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:52.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:22:52.748 -07 000000618 INF: FPGA: Recv ZPIEZORD 31832
17-03-17 19:22:52.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:52.758 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -8.9 V.
17-03-17 19:22:52.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35845 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35844 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35842 (-169.7 uncal um), Max = 35851 (-169.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:22:52.758 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35845, posNoise = 6, negNoise = 3
17-03-17 19:22:52.758 -07 000000610 INF: Z Motor: After move to -0.170588, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:22:52.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:22:52.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:22:52.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:22:52.758 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:22:52.758 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:22:52.758 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:22:52.758 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:22:52.758 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:22:52.758 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:22:52.758 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:22:52.758 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:22:52.758 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:22:52.758 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:22:52.758 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:22:52.758 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:22:52.768 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:22:52.768 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:22:52.768 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:22:52.768 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:22:52.778 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:22:52.778 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:22:52.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 37442 150\n [Camera]
17-03-17 19:22:52.978 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:22:53.378 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:22:53.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:22:53.378 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:22:53.378 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:22:53.378 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1130172576, 0x0, 391868352) start.
17-03-17 19:22:53.378 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:22:53.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:22:53.378 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:22:53.498 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:22:53.498 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:22:53.568 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37442 786
17-03-17 19:22:53.718 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:22:53.758 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1130172576, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:22:53.758 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:22:53.758 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:53.758 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:22:53.768 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:22:53.868 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 19:22:53.868 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 19:22:53.868 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:53.868 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:22:53.878 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 494 ms.
17-03-17 19:22:53.908 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:22:53.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:22:53.918 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:22:53.918 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:22:53.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:22:53.918 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:22:53.918 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:22:53.918 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2602569432, 0x0, 391868352) start.
17-03-17 19:22:53.918 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:22:53.918 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1059328048, 0x0, 418435064) start.
17-03-17 19:22:54.108 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:22:54.108 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:22:54.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 37442 150' command took 2 ms to send, 1321 ms to get response, and 1328 ms overall
17-03-17 19:22:54.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:22:54.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.170599236232556. ------
17-03-17 19:22:54.108 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:22:54.108 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17716 mm
17-03-17 19:22:54.108 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:22:54.118 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:22:54.118 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:22:54.118 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:22:54.118 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:22:54.118 -07 000000501 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 19:22:54.118 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38701, sync = True, waitForSettling = False)
17-03-17 19:22:54.118 -07 000000433 INF: Z Motor: Moving to -0.177162 mm, started at -0.170599 mm, distance = -6.56 um
17-03-17 19:22:54.128 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:54.128 -07 000000608 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:22:54.138 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:22:54.138 -07 000000433 INF: FPGA: Xmit ZDACW 38701\n [Z Motor]
17-03-17 19:22:54.138 -07 000000501 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:54.138 -07 000000501 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:22:54.138 -07 000000501 INF: Y Motor: Moving 1337 steps-12
17-03-17 19:22:54.138 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:22:54.148 -07 000000433 INF: FPGA: 'ZDACW 38701' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:22:54.148 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:22:54.148 -07 000000476 INF: FPGA: Recv ZDACR 38701
17-03-17 19:22:54.158 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:54.158 -07 000000433 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 19:22:54.158 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:22:54.308 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2602569432, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:22:54.308 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:22:54.308 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:54.308 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1059328048, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:22:54.308 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:22:54.308 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:54.308 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:22:54.308 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:22:54.308 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:22:54.318 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:22:54.318 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:22:54.318 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:22:54.528 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 19:22:54.528 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 19:22:54.568 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:54.568 -07 000000618 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:22:54.578 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:22:54.578 -07 000000501 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:54.578 -07 000000501 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:22:54.578 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec
17-03-17 19:22:55.528 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:55.528 -07 000000623 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:22:55.538 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:22:55.538 -07 000000501 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:55.558 -07 000000501 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:22:55.558 -07 000000501 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:22:55.558 -07 000000501 INF: Y Motor: Moved to 64.8789 after 1438 ms (table move)
17-03-17 19:22:55.558 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177162 mm (DAC = 38701)
17-03-17 19:22:55.558 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:55.558 -07 000000623 INF: FPGA: Recv ZSGSRD 36866
17-03-17 19:22:55.568 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:22:55.568 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:55.568 -07 000000608 INF: FPGA: Recv ZSGSRD 36867
17-03-17 19:22:55.578 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:55.578 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:55.578 -07 000000626 INF: FPGA: Recv ZSGSRD 36866
17-03-17 19:22:55.588 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:55.588 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:55.588 -07 000000478 INF: FPGA: Recv ZSGSRD 36869
17-03-17 19:22:55.598 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:55.598 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:55.598 -07 000000623 INF: FPGA: Recv ZSGSRD 36873
17-03-17 19:22:55.608 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:55.608 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:55.608 -07 000000476 INF: FPGA: Recv ZSGSRD 36875
17-03-17 19:22:55.618 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:55.618 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:55.618 -07 000000541 INF: FPGA: Recv ZSGSRD 36867
17-03-17 19:22:55.628 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:55.628 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:55.628 -07 000000476 INF: FPGA: Recv ZSGSRD 36866
17-03-17 19:22:55.638 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:55.638 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:55.638 -07 000000541 INF: FPGA: Recv ZSGSRD 36873
17-03-17 19:22:55.648 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:55.648 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:55.648 -07 000000476 INF: FPGA: Recv ZSGSRD 36870
17-03-17 19:22:55.658 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:55.658 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:22:55.658 -07 000000541 INF: FPGA: Recv ZPIEZORD 33188
17-03-17 19:22:55.668 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:55.668 -07 000000475 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.905 V. Piezo Error = -8.2 V.
17-03-17 19:22:55.668 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36869 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36868 (-176.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36866 (-176.3 uncal um), Max = 36875 (-176.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:22:55.668 -07 000000475 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36869, posNoise = 6, negNoise = 3
17-03-17 19:22:55.668 -07 000000475 INF: Z Motor: After move to -0.177162, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:22:55.668 -07 000000475 INF: Z Motor: Settle wait time = 1441 ms, measure time = 106 ms (allowed 150 ms), total time = 1547 ms
17-03-17 19:22:55.668 -07 000000475 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:22:55.718 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 19:22:55.718 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:22:55.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:22:55.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:22:55.718 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:22:55.718 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:22:55.718 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:22:55.718 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:22:55.728 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:22:55.728 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:22:55.728 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:22:55.728 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:22:55.738 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:22:55.738 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:22:55.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:22:55.788 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:22:55.988 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:22:55.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:22:55.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:22:55.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111756504, 0x0, 559484976) start.
17-03-17 19:22:56.028 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:22:56.028 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 19:22:56.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 19:22:56.078 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.016692,
17-03-17 19:22:56.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111756504, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:22:56.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:56.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:22:56.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 19:22:56.128 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:22:56.128 -07 000000476 INF: Autofocus start
17-03-17 19:22:56.128 -07 000000476 INF: MeasureProfile start
17-03-17 19:22:56.128 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:22:56.138 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:22:56.138 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:22:56.138 -07 000000476 INF: MeasureProfile done
17-03-17 19:22:56.138 -07 000000476 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:22:56.138 -07 000000476 INF: Autofocus finished
17-03-17 19:22:56.338 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:22:56.338 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 19:22:56.338 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.17717762946572. ----------
17-03-17 19:22:56.348 -07 000000610 INF: Cycle	25	Tile	7	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:22:56.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37198, sync = True, waitForSettling = True)
17-03-17 19:22:56.348 -07 000000610 INF: Z Motor: Moving to -0.170282 mm, started at -0.177178 mm, distance = 6.90 um
17-03-17 19:22:56.348 -07 000000610 INF: FPGA: Xmit ZDACW 37198\n [Z Motor]
17-03-17 19:22:56.348 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:22:56.358 -07 000000610 INF: FPGA: 'ZDACW 37198' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:22:56.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:22:56.358 -07 000000618 INF: FPGA: Recv ZDACR 37198
17-03-17 19:22:56.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:56.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:22:56.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:56.518 -07 000000608 INF: FPGA: Recv ZSGSRD 35798
17-03-17 19:22:56.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:22:56.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:56.528 -07 000000608 INF: FPGA: Recv ZSGSRD 35802
17-03-17 19:22:56.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:56.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:56.538 -07 000000618 INF: FPGA: Recv ZSGSRD 35799
17-03-17 19:22:56.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:56.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:56.548 -07 000000618 INF: FPGA: Recv ZSGSRD 35799
17-03-17 19:22:56.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:56.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:56.558 -07 000000618 INF: FPGA: Recv ZSGSRD 35795
17-03-17 19:22:56.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:56.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:56.568 -07 000000608 INF: FPGA: Recv ZSGSRD 35796
17-03-17 19:22:56.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:56.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:56.578 -07 000000618 INF: FPGA: Recv ZSGSRD 35798
17-03-17 19:22:56.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:56.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:56.588 -07 000000618 INF: FPGA: Recv ZSGSRD 35799
17-03-17 19:22:56.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:56.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:56.598 -07 000000012 INF: FPGA: Recv ZSGSRD 35792
17-03-17 19:22:56.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:22:56.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:56.608 -07 000000012 INF: FPGA: Recv ZSGSRD 35800
17-03-17 19:22:56.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:56.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:22:56.618 -07 000000618 INF: FPGA: Recv ZPIEZORD 31756
17-03-17 19:22:56.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:56.628 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.676 V. Piezo Error = -8.9 V.
17-03-17 19:22:56.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35798 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35798 (-169.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35792 (-169.4 uncal um), Max = 35802 (-169.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:22:56.628 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35798, posNoise = 4, negNoise = 6
17-03-17 19:22:56.628 -07 000000610 INF: Z Motor: After move to -0.170282, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:22:56.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:22:56.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:22:56.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:22:56.628 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:22:56.628 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:22:56.628 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:22:56.628 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:22:56.628 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:22:56.628 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:22:56.628 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:22:56.628 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:22:56.628 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:22:56.628 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:22:56.628 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:22:56.628 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:22:56.638 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:22:56.638 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:22:56.638 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:22:56.638 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:22:56.638 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:22:56.648 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:22:56.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 37375 150\n [Camera]
17-03-17 19:22:56.678 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:22:56.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:22:56.848 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:22:57.248 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:22:57.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:22:57.248 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:22:57.248 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:22:57.248 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:22:57.248 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:22:57.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:22:57.248 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:22:57.248 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:22:57.248 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:22:57.438 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37375 787
17-03-17 19:22:57.588 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:22:57.628 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:22:57.628 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:22:57.628 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:57.638 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:22:57.638 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:22:57.638 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:57.638 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:22:57.638 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:22:57.638 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:22:57.648 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:22:57.788 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:22:57.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:22:57.788 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:22:57.888 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:22:57.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:22:57.888 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:22:57.888 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:22:57.888 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:22:57.898 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:22:57.898 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:22:57.978 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:22:57.978 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:22:57.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 37375 150' command took 2 ms to send, 1322 ms to get response, and 1329 ms overall
17-03-17 19:22:57.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:22:57.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.170297298261894. ------
17-03-17 19:22:57.978 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:22:57.978 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17685 mm
17-03-17 19:22:57.978 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:22:57.988 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:22:57.988 -07 000000012 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 19:22:57.988 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:57.988 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:22:57.988 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:22:57.988 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38632, sync = True, waitForSettling = False)
17-03-17 19:22:57.988 -07 000000618 INF: Z Motor: Moving to -0.176846 mm, started at -0.170297 mm, distance = -6.55 um
17-03-17 19:22:57.988 -07 000000475 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:22:57.998 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:22:57.998 -07 000000012 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:57.998 -07 000000012 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:22:57.998 -07 000000012 INF: Y Motor: Moving 1350 steps-28
17-03-17 19:22:57.998 -07 000000618 INF: FPGA: Xmit ZDACW 38632\n [Z Motor]
17-03-17 19:22:57.998 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:22:58.008 -07 000000618 INF: FPGA: 'ZDACW 38632' command took 3 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:22:58.008 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:22:58.018 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:22:58.028 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:22:58.028 -07 000000433 INF: FPGA: Recv ZDACR 38632
17-03-17 19:22:58.038 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:22:58.038 -07 000000618 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 19:22:58.208 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:22:58.208 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 19:22:58.288 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:22:58.288 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:22:58.288 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:58.288 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:22:58.288 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:22:58.288 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:58.288 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:22:58.288 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:22:58.288 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 19:22:58.298 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:22:58.388 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:22:58.388 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 19:22:58.428 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:58.428 -07 000000478 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:22:58.438 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:22:58.438 -07 000000012 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:58.438 -07 000000012 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:22:58.438 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 19:22:59.388 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:22:59.388 -07 000000626 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:22:59.398 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:22:59.398 -07 000000012 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:22:59.418 -07 000000012 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:22:59.418 -07 000000012 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:22:59.418 -07 000000012 INF: Y Motor: Moved to 65.7144 after 1431 ms (table move)
17-03-17 19:22:59.418 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176846 mm (DAC = 38632)
17-03-17 19:22:59.418 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:59.428 -07 000000012 INF: FPGA: Recv ZSGSRD 36821
17-03-17 19:22:59.428 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:22:59.428 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:59.428 -07 000000012 INF: FPGA: Recv ZSGSRD 36821
17-03-17 19:22:59.438 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:59.438 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:59.438 -07 000000431 INF: FPGA: Recv ZSGSRD 36819
17-03-17 19:22:59.448 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:59.448 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:59.448 -07 000000561 INF: FPGA: Recv ZSGSRD 36821
17-03-17 19:22:59.458 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:59.458 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:59.458 -07 000000012 INF: FPGA: Recv ZSGSRD 36823
17-03-17 19:22:59.468 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:59.468 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:59.468 -07 000000012 INF: FPGA: Recv ZSGSRD 36818
17-03-17 19:22:59.478 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:59.478 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:59.478 -07 000000012 INF: FPGA: Recv ZSGSRD 36819
17-03-17 19:22:59.488 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:59.488 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:59.488 -07 000000012 INF: FPGA: Recv ZSGSRD 36816
17-03-17 19:22:59.498 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:59.498 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:59.498 -07 000000012 INF: FPGA: Recv ZSGSRD 36811
17-03-17 19:22:59.508 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:59.508 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:22:59.508 -07 000000012 INF: FPGA: Recv ZSGSRD 36816
17-03-17 19:22:59.518 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:59.518 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:22:59.518 -07 000000012 INF: FPGA: Recv ZPIEZORD 33143
17-03-17 19:22:59.528 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:22:59.528 -07 000000501 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.895 V. Piezo Error = -8.1 V.
17-03-17 19:22:59.528 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36818 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36819 (-176.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36811 (-175.9 uncal um), Max = 36823 (-176.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:22:59.528 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36818, posNoise = 5, negNoise = 7
17-03-17 19:22:59.528 -07 000000501 INF: Z Motor: After move to -0.176846, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:22:59.528 -07 000000501 INF: Z Motor: Settle wait time = 1434 ms, measure time = 104 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:22:59.528 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:22:59.578 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 19:22:59.578 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:22:59.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:22:59.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:22:59.578 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:22:59.578 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:22:59.578 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:22:59.578 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:22:59.578 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:22:59.578 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:22:59.588 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:22:59.588 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:22:59.598 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:22:59.598 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:22:59.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:22:59.638 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:22:59.838 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:22:59.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:22:59.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:22:59.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585694368, 0x0, 559484976) start.
17-03-17 19:22:59.878 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:22:59.878 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:22:59.878 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 19:22:59.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585694368, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 19:22:59.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:22:59.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:22:59.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 19:23:00.078 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:00.078 -07 000000475 INF: Autofocus start
17-03-17 19:23:00.078 -07 000000475 INF: MeasureProfile start
17-03-17 19:23:00.078 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:00.088 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:23:00.088 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:23:00.088 -07 000000475 INF: MeasureProfile done
17-03-17 19:23:00.088 -07 000000475 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:23:00.088 -07 000000475 INF: Autofocus finished
17-03-17 19:23:00.288 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:23:00.288 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:23:00.288 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.17684999464649. ----------
17-03-17 19:23:00.288 -07 000000610 INF: Cycle	25	Tile	8	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:23:00.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37147, sync = True, waitForSettling = True)
17-03-17 19:23:00.298 -07 000000610 INF: Z Motor: Moving to -0.170048 mm, started at -0.176850 mm, distance = 6.80 um
17-03-17 19:23:00.298 -07 000000610 INF: FPGA: Xmit ZDACW 37147\n [Z Motor]
17-03-17 19:23:00.298 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:23:00.308 -07 000000610 INF: FPGA: 'ZDACW 37147' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:23:00.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:00.308 -07 000000608 INF: FPGA: Recv ZDACR 37147
17-03-17 19:23:00.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:00.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:23:00.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:00.468 -07 000000608 INF: FPGA: Recv ZSGSRD 35764
17-03-17 19:23:00.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:00.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:00.478 -07 000000608 INF: FPGA: Recv ZSGSRD 35756
17-03-17 19:23:00.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:00.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:00.488 -07 000000608 INF: FPGA: Recv ZSGSRD 35758
17-03-17 19:23:00.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:00.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:00.498 -07 000000478 INF: FPGA: Recv ZSGSRD 35765
17-03-17 19:23:00.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:00.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:00.508 -07 000000478 INF: FPGA: Recv ZSGSRD 35761
17-03-17 19:23:00.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:00.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:00.518 -07 000000608 INF: FPGA: Recv ZSGSRD 35759
17-03-17 19:23:00.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:00.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:00.528 -07 000000478 INF: FPGA: Recv ZSGSRD 35761
17-03-17 19:23:00.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:00.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:00.538 -07 000000478 INF: FPGA: Recv ZSGSRD 35760
17-03-17 19:23:00.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:00.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:00.548 -07 000000478 INF: FPGA: Recv ZSGSRD 35759
17-03-17 19:23:00.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:00.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:00.558 -07 000000478 INF: FPGA: Recv ZSGSRD 35757
17-03-17 19:23:00.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:00.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:00.568 -07 000000478 INF: FPGA: Recv ZPIEZORD 31746
17-03-17 19:23:00.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:00.578 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.668 V. Piezo Error = -8.9 V.
17-03-17 19:23:00.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35760 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35760 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35756 (-169.2 uncal um), Max = 35765 (-169.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:23:00.578 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35760, posNoise = 5, negNoise = 4
17-03-17 19:23:00.578 -07 000000610 INF: Z Motor: After move to -0.170048, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:00.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:23:00.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:00.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:00.598 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:00.598 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:00.598 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:23:00.598 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:00.598 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:23:00.598 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:23:00.598 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:00.598 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:23:00.598 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:23:00.598 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:23:00.608 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:23:00.608 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:23:00.608 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:23:00.608 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:23:00.618 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:23:00.618 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:23:00.618 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 19:23:00.618 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:23:00.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 37324 150\n [Camera]
17-03-17 19:23:00.828 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:23:01.228 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:23:01.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:23:01.228 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:01.228 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:23:01.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:23:01.228 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:01.228 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:01.228 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2604775752, 0x0, 391868352) start.
17-03-17 19:23:01.238 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:01.238 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1059328048, 0x0, 418435064) start.
17-03-17 19:23:01.418 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37324 786
17-03-17 19:23:01.438 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.98264,
17-03-17 19:23:01.568 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:23:01.608 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1059328048, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 19:23:01.608 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 19:23:01.608 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:01.608 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2604775752, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:23:01.608 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:23:01.608 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:01.608 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:01.608 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:01.608 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:23:01.618 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:23:01.678 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:23:01.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:23:01.758 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:23:01.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:23:01.758 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:01.768 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:23:01.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:23:01.768 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:01.888 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:01.888 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:23:01.888 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:01.888 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:23:01.948 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-17 19:23:01.948 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:23:01.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 37324 150' command took 3 ms to send, 1319 ms to get response, and 1328 ms overall
17-03-17 19:23:01.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:23:01.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.170053178200507. ------
17-03-17 19:23:01.958 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17632 mm
17-03-17 19:23:01.958 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:23:01.958 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:01.958 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:23:01.958 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38518, sync = True, waitForSettling = False)
17-03-17 19:23:01.958 -07 000000618 INF: Z Motor: Moving to -0.176324 mm, started at -0.170053 mm, distance = -6.27 um
17-03-17 19:23:01.958 -07 000000475 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 19:23:01.958 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:01.968 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:23:01.968 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:01.968 -07 000000478 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:23:01.978 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:23:01.978 -07 000000475 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:01.978 -07 000000475 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:23:01.978 -07 000000475 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:23:01.978 -07 000000618 INF: FPGA: Xmit ZDACW 38518\n [Z Motor]
17-03-17 19:23:01.978 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:23:01.988 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:23:01.988 -07 000000618 INF: FPGA: 'ZDACW 38518' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:23:01.998 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:23:02.008 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:02.008 -07 000000012 INF: FPGA: Recv ZDACR 38518
17-03-17 19:23:02.018 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:23:02.018 -07 000000618 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 19:23:02.188 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:23:02.188 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:23:02.278 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 19:23:02.278 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:23:02.278 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:23:02.278 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:02.278 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:23:02.278 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:02.288 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:02.288 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:02.288 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-17 19:23:02.288 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-17 19:23:02.368 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 19:23:02.368 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:23:02.408 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:02.408 -07 000000431 INF: FPGA: Recv YRDPOS 136272
17-03-17 19:23:02.418 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:23:02.418 -07 000000475 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:02.418 -07 000000475 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:23:02.418 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 19:23:03.368 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:03.368 -07 000000608 INF: FPGA: Recv YRDPOS 136272
17-03-17 19:23:03.378 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:03.378 -07 000000475 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:03.398 -07 000000475 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:23:03.398 -07 000000475 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:23:03.398 -07 000000475 INF: Y Motor: Moved to 66.5391 after 1433 ms (table move)
17-03-17 19:23:03.398 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176324 mm (DAC = 38518)
17-03-17 19:23:03.398 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:03.398 -07 000000626 INF: FPGA: Recv ZSGSRD 36737
17-03-17 19:23:03.408 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:23:03.408 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:03.408 -07 000000608 INF: FPGA: Recv ZSGSRD 36735
17-03-17 19:23:03.418 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:03.418 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:03.418 -07 000000626 INF: FPGA: Recv ZSGSRD 36737
17-03-17 19:23:03.428 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:03.428 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:03.428 -07 000000431 INF: FPGA: Recv ZSGSRD 36742
17-03-17 19:23:03.438 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:03.438 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:03.438 -07 000000431 INF: FPGA: Recv ZSGSRD 36740
17-03-17 19:23:03.448 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:03.448 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:03.448 -07 000000431 INF: FPGA: Recv ZSGSRD 36740
17-03-17 19:23:03.458 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:03.458 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:03.458 -07 000000431 INF: FPGA: Recv ZSGSRD 36738
17-03-17 19:23:03.468 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:03.468 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:03.468 -07 000000431 INF: FPGA: Recv ZSGSRD 36732
17-03-17 19:23:03.478 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:03.478 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:03.478 -07 000000431 INF: FPGA: Recv ZSGSRD 36733
17-03-17 19:23:03.488 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:03.488 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:03.488 -07 000000431 INF: FPGA: Recv ZSGSRD 36731
17-03-17 19:23:03.498 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:03.498 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:03.498 -07 000000431 INF: FPGA: Recv ZPIEZORD 33039
17-03-17 19:23:03.508 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:03.508 -07 000000433 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.877 V. Piezo Error = -8.2 V.
17-03-17 19:23:03.508 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36736 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36737 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36731 (-175.4 uncal um), Max = 36742 (-175.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:23:03.508 -07 000000433 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36736, posNoise = 6, negNoise = 5
17-03-17 19:23:03.508 -07 000000433 INF: Z Motor: After move to -0.176324, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:03.508 -07 000000433 INF: Z Motor: Settle wait time = 1437 ms, measure time = 105 ms (allowed 150 ms), total time = 1542 ms
17-03-17 19:23:03.508 -07 000000433 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:23:03.558 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 19:23:03.558 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:23:03.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:03.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:03.558 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:03.558 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:03.568 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:23:03.568 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:03.568 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:03.568 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:23:03.568 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:23:03.568 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:23:03.578 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:23:03.578 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:23:03.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:23:03.628 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:23:03.828 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:23:03.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:23:03.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:23:03.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585694368, 0x0, 559484976) start.
17-03-17 19:23:03.868 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:23:03.868 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 19:23:03.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:23:03.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585694368, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:23:03.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:03.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:23:03.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:23:03.968 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:04.678 -07 000000501 INF: Autofocus start
17-03-17 19:23:04.678 -07 000000501 INF: MeasureProfile start
17-03-17 19:23:04.688 -07 000000501 INF: MeasureProfile done
17-03-17 19:23:04.688 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:23:04.688 -07 000000501 INF: Autofocus finished
17-03-17 19:23:04.688 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:04.688 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 715 ms to get response, and 720 ms overall
17-03-17 19:23:04.688 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:23:04.898 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:23:04.898 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 201 ms to get response, and 205 ms overall
17-03-17 19:23:04.898 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.176323209250865. ----------
17-03-17 19:23:04.898 -07 000000610 INF: Cycle	25	Tile	9	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:23:04.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37033, sync = True, waitForSettling = True)
17-03-17 19:23:04.908 -07 000000610 INF: Z Motor: Moving to -0.169526 mm, started at -0.176323 mm, distance = 6.80 um
17-03-17 19:23:04.908 -07 000000610 INF: FPGA: Xmit ZDACW 37033\n [Z Motor]
17-03-17 19:23:04.908 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:23:04.918 -07 000000610 INF: FPGA: 'ZDACW 37033' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:04.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:04.918 -07 000000433 INF: FPGA: Recv ZDACR 37033
17-03-17 19:23:04.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:04.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:23:05.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:05.078 -07 000000501 INF: FPGA: Recv ZSGSRD 35679
17-03-17 19:23:05.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:05.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:05.088 -07 000000433 INF: FPGA: Recv ZSGSRD 35680
17-03-17 19:23:05.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:05.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:05.098 -07 000000501 INF: FPGA: Recv ZSGSRD 35685
17-03-17 19:23:05.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:05.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:05.108 -07 000000541 INF: FPGA: Recv ZSGSRD 35676
17-03-17 19:23:05.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:05.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:05.118 -07 000000433 INF: FPGA: Recv ZSGSRD 35679
17-03-17 19:23:05.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:05.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:05.128 -07 000000561 INF: FPGA: Recv ZSGSRD 35681
17-03-17 19:23:05.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:05.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:05.138 -07 000000541 INF: FPGA: Recv ZSGSRD 35680
17-03-17 19:23:05.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:05.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:05.148 -07 000000561 INF: FPGA: Recv ZSGSRD 35681
17-03-17 19:23:05.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:05.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:05.158 -07 000000501 INF: FPGA: Recv ZSGSRD 35675
17-03-17 19:23:05.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:05.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:05.168 -07 000000501 INF: FPGA: Recv ZSGSRD 35683
17-03-17 19:23:05.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:05.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:05.178 -07 000000541 INF: FPGA: Recv ZPIEZORD 31666
17-03-17 19:23:05.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:05.188 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -8.9 V.
17-03-17 19:23:05.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35680 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35680 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35675 (-168.6 uncal um), Max = 35685 (-168.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:23:05.188 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35680, posNoise = 5, negNoise = 5
17-03-17 19:23:05.188 -07 000000610 INF: Z Motor: After move to -0.169526, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:05.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:23:05.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:05.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:05.188 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:05.188 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:05.188 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:23:05.188 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:23:05.188 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:23:05.188 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:05.188 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:23:05.188 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:23:05.188 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:05.188 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:23:05.198 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:23:05.198 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:23:05.198 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:23:05.198 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:23:05.208 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:23:05.208 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:23:05.208 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:23:05.208 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:23:05.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 37210 150\n [Camera]
17-03-17 19:23:05.408 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:23:05.808 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:23:05.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:23:05.808 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:05.808 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:23:05.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:23:05.808 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:05.808 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:05.808 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:05.808 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2604775752, 0x0, 391868352) start.
17-03-17 19:23:05.808 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:23:05.998 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37210 786
17-03-17 19:23:06.148 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:23:06.198 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:23:06.198 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:23:06.198 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:06.198 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2604775752, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:23:06.198 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:23:06.198 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:06.198 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:06.208 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:06.208 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:23:06.208 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:23:06.348 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1131
17-03-17 19:23:06.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1131
17-03-17 19:23:06.348 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:06.348 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:06.348 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:23:06.348 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1131
17-03-17 19:23:06.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1131
17-03-17 19:23:06.348 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:06.348 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:06.348 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:23:06.538 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:23:06.538 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:23:06.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 37210 150' command took 2 ms to send, 1321 ms to get response, and 1329 ms overall
17-03-17 19:23:06.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:23:06.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.169539241229166. ------
17-03-17 19:23:06.538 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:06.538 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17633 mm
17-03-17 19:23:06.538 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:23:06.538 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:23:06.538 -07 000000476 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 19:23:06.648 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:06.648 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 108 ms overall
17-03-17 19:23:06.648 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:06.648 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 38519, sync = True, waitForSettling = False)
17-03-17 19:23:06.648 -07 000000541 INF: Z Motor: Moving to -0.176329 mm, started at -0.169539 mm, distance = -6.79 um
17-03-17 19:23:06.648 -07 000000478 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:23:06.658 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:23:06.658 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:23:06.658 -07 000000476 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:06.658 -07 000000476 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:23:06.658 -07 000000476 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:23:06.668 -07 000000541 INF: FPGA: Xmit ZDACW 38519\n [Z Motor]
17-03-17 19:23:06.668 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:23:06.678 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:23:06.678 -07 000000541 INF: FPGA: 'ZDACW 38519' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:23:06.678 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:23:06.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:23:06.688 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:06.688 -07 000000478 INF: FPGA: Recv ZDACR 38519
17-03-17 19:23:06.698 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:23:06.698 -07 000000541 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 19:23:06.738 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:23:06.738 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:23:06.738 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:06.738 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 19:23:06.738 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:23:06.738 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:06.748 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:06.748 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:23:06.748 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:23:06.748 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:23:06.798 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.983999,
17-03-17 19:23:06.858 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:23:06.858 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 207 ms overall
17-03-17 19:23:07.048 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:23:07.048 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:23:07.088 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:07.748 -07 000000480 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:23:07.748 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 650 ms to get response, and 659 ms overall
17-03-17 19:23:07.748 -07 000000476 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:07.748 -07 000000476 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 19:23:07.748 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 19:23:08.698 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:08.698 -07 000000623 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:23:08.708 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:08.708 -07 000000476 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:08.728 -07 000000476 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:23:08.728 -07 000000476 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:23:08.728 -07 000000476 INF: Y Motor: Moved to 67.3721 after 2185 ms (table move)
17-03-17 19:23:08.728 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176329 mm (DAC = 38519)
17-03-17 19:23:08.728 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:08.738 -07 000000476 INF: FPGA: Recv ZSGSRD 36737
17-03-17 19:23:08.738 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:23:08.738 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:08.738 -07 000000623 INF: FPGA: Recv ZSGSRD 36744
17-03-17 19:23:08.748 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:08.748 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:08.748 -07 000000561 INF: FPGA: Recv ZSGSRD 36737
17-03-17 19:23:08.758 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:08.758 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:08.758 -07 000000478 INF: FPGA: Recv ZSGSRD 36731
17-03-17 19:23:08.768 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:08.768 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:08.768 -07 000000561 INF: FPGA: Recv ZSGSRD 36735
17-03-17 19:23:08.778 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:08.778 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:08.778 -07 000000475 INF: FPGA: Recv ZSGSRD 36742
17-03-17 19:23:08.788 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:08.788 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:08.788 -07 000000476 INF: FPGA: Recv ZSGSRD 36740
17-03-17 19:23:08.798 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:08.798 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:08.798 -07 000000478 INF: FPGA: Recv ZSGSRD 36734
17-03-17 19:23:08.808 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:08.808 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:08.808 -07 000000618 INF: FPGA: Recv ZSGSRD 36737
17-03-17 19:23:08.818 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:08.818 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:08.818 -07 000000561 INF: FPGA: Recv ZSGSRD 36742
17-03-17 19:23:08.828 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:08.828 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:08.828 -07 000000478 INF: FPGA: Recv ZPIEZORD 33081
17-03-17 19:23:08.838 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:08.838 -07 000000501 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.878 V. Piezo Error = -8.1 V.
17-03-17 19:23:08.838 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36738 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36737 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36731 (-175.4 uncal um), Max = 36744 (-175.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:23:08.838 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36738, posNoise = 6, negNoise = 7
17-03-17 19:23:08.838 -07 000000501 INF: Z Motor: After move to -0.176329, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:08.838 -07 000000501 INF: Z Motor: Settle wait time = 2081 ms, measure time = 105 ms (allowed 150 ms), total time = 2186 ms
17-03-17 19:23:08.838 -07 000000501 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:23:08.888 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2343 ms
17-03-17 19:23:08.888 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:23:08.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:08.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:08.888 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:08.888 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:08.888 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:23:08.888 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:08.888 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:08.888 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:23:08.898 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:23:08.898 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:23:08.898 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:23:08.898 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:23:08.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:23:08.948 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:23:09.148 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:23:09.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:23:09.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:23:09.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:23:09.188 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:23:09.188 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 19:23:09.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 19:23:09.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:23:09.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:09.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:23:09.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:23:09.288 -07 000000561 INF: Autofocus start
17-03-17 19:23:09.288 -07 000000561 INF: MeasureProfile start
17-03-17 19:23:09.288 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:09.288 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:09.298 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:23:09.298 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:23:09.298 -07 000000561 INF: MeasureProfile done
17-03-17 19:23:09.298 -07 000000561 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:23:09.298 -07 000000561 INF: Autofocus finished
17-03-17 19:23:09.498 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:23:09.498 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:23:09.498 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.176336057675149. ----------
17-03-17 19:23:09.508 -07 000000610 INF: Cycle	25	Tile	10	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:23:09.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37034, sync = True, waitForSettling = True)
17-03-17 19:23:09.508 -07 000000610 INF: Z Motor: Moving to -0.169531 mm, started at -0.176336 mm, distance = 6.81 um
17-03-17 19:23:09.508 -07 000000610 INF: FPGA: Xmit ZDACW 37034\n [Z Motor]
17-03-17 19:23:09.508 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:23:09.518 -07 000000610 INF: FPGA: 'ZDACW 37034' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:23:09.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:09.518 -07 000000561 INF: FPGA: Recv ZDACR 37034
17-03-17 19:23:09.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:09.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:23:09.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:09.678 -07 000000623 INF: FPGA: Recv ZSGSRD 35683
17-03-17 19:23:09.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:09.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:09.688 -07 000000561 INF: FPGA: Recv ZSGSRD 35681
17-03-17 19:23:09.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:09.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:09.698 -07 000000623 INF: FPGA: Recv ZSGSRD 35681
17-03-17 19:23:09.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:09.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:09.708 -07 000000476 INF: FPGA: Recv ZSGSRD 35680
17-03-17 19:23:09.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:09.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:09.718 -07 000000541 INF: FPGA: Recv ZSGSRD 35682
17-03-17 19:23:09.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:09.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:09.728 -07 000000480 INF: FPGA: Recv ZSGSRD 35681
17-03-17 19:23:09.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:09.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:09.738 -07 000000501 INF: FPGA: Recv ZSGSRD 35680
17-03-17 19:23:09.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:09.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:09.748 -07 000000480 INF: FPGA: Recv ZSGSRD 35680
17-03-17 19:23:09.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:09.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:09.758 -07 000000501 INF: FPGA: Recv ZSGSRD 35680
17-03-17 19:23:09.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:09.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:09.768 -07 000000476 INF: FPGA: Recv ZSGSRD 35677
17-03-17 19:23:09.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:09.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:09.778 -07 000000475 INF: FPGA: Recv ZPIEZORD 31666
17-03-17 19:23:09.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:09.788 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -8.9 V.
17-03-17 19:23:09.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35680 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35680 (-168.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35677 (-168.6 uncal um), Max = 35683 (-168.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:23:09.788 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35680, posNoise = 3, negNoise = 3
17-03-17 19:23:09.788 -07 000000610 INF: Z Motor: After move to -0.169531, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:09.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:23:09.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:09.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:09.788 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:09.788 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:23:09.788 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:23:09.788 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:23:09.788 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:09.788 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:09.788 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:23:09.788 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:23:09.788 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:23:09.788 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:23:09.798 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:23:09.798 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:23:09.798 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:23:09.798 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:23:09.808 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:23:09.808 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:23:09.808 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:23:09.808 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:23:09.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 37211 150\n [Camera]
17-03-17 19:23:10.008 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:23:10.408 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:23:10.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:23:10.408 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:10.408 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:23:10.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:23:10.408 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:10.418 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:10.418 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:23:10.418 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:10.418 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:23:10.598 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37211 786
17-03-17 19:23:10.748 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:23:10.818 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:23:10.818 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:23:10.818 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:10.818 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:23:10.818 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:23:10.818 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:10.818 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:10.818 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 19:23:10.818 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:10.828 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:23:10.948 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:23:10.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:23:10.948 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:10.948 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:23:10.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:23:10.948 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:10.958 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:10.958 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 19:23:10.958 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:10.958 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:23:11.138 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-17 19:23:11.138 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:23:11.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 37211 150' command took 2 ms to send, 1323 ms to get response, and 1328 ms overall
17-03-17 19:23:11.138 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:23:11.138 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.169539241229166. ------
17-03-17 19:23:11.138 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:11.138 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17534 mm
17-03-17 19:23:11.138 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:23:11.148 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:11.148 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:23:11.148 -07 000000476 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 19:23:11.148 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:11.148 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38302, sync = True, waitForSettling = False)
17-03-17 19:23:11.148 -07 000000561 INF: Z Motor: Moving to -0.175335 mm, started at -0.169539 mm, distance = -5.80 um
17-03-17 19:23:11.148 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:23:11.148 -07 000000623 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:23:11.158 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:23:11.158 -07 000000476 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:11.158 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:23:11.158 -07 000000476 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:23:11.158 -07 000000476 INF: Y Motor: Moving 1344 steps-22
17-03-17 19:23:11.168 -07 000000561 INF: FPGA: Xmit ZDACW 38302\n [Z Motor]
17-03-17 19:23:11.168 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:23:11.178 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:23:11.178 -07 000000561 INF: FPGA: 'ZDACW 38302' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:23:11.188 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:11.188 -07 000000480 INF: FPGA: Recv ZDACR 38302
17-03-17 19:23:11.198 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:23:11.198 -07 000000561 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 19:23:11.338 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:23:11.338 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:23:11.338 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:11.348 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:11.348 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:23:11.348 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:23:11.348 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:11.348 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:11.348 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:23:11.348 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:23:11.358 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:23:11.358 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 19:23:11.548 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 19:23:11.548 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 19:23:11.588 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:11.588 -07 000000626 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:23:11.598 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:23:11.598 -07 000000476 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:11.598 -07 000000476 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:23:11.598 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.841 mm, average velocity = 2.128 mm/sec
17-03-17 19:23:11.678 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:23:11.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:23:12.158 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.954032,
17-03-17 19:23:12.548 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:12.548 -07 000000561 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:23:12.558 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:12.558 -07 000000476 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:12.568 -07 000000476 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:23:12.568 -07 000000476 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:23:12.568 -07 000000476 INF: Y Motor: Moved to 68.2051 after 1426 ms (table move)
17-03-17 19:23:12.578 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175335 mm (DAC = 38302)
17-03-17 19:23:12.578 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:12.578 -07 000000476 INF: FPGA: Recv ZSGSRD 36588
17-03-17 19:23:12.588 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:23:12.588 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:12.588 -07 000000476 INF: FPGA: Recv ZSGSRD 36585
17-03-17 19:23:12.598 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:12.598 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:12.598 -07 000000478 INF: FPGA: Recv ZSGSRD 36576
17-03-17 19:23:12.608 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:23:12.608 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:12.608 -07 000000476 INF: FPGA: Recv ZSGSRD 36587
17-03-17 19:23:12.618 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:12.618 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:12.618 -07 000000480 INF: FPGA: Recv ZSGSRD 36589
17-03-17 19:23:12.628 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:12.628 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:12.628 -07 000000623 INF: FPGA: Recv ZSGSRD 36585
17-03-17 19:23:12.638 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:12.638 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:12.638 -07 000000475 INF: FPGA: Recv ZSGSRD 36581
17-03-17 19:23:12.648 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:12.648 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:12.648 -07 000000475 INF: FPGA: Recv ZSGSRD 36586
17-03-17 19:23:12.658 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:12.658 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:12.658 -07 000000623 INF: FPGA: Recv ZSGSRD 36583
17-03-17 19:23:12.668 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:12.668 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:12.668 -07 000000618 INF: FPGA: Recv ZSGSRD 36584
17-03-17 19:23:12.678 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:12.678 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:12.678 -07 000000618 INF: FPGA: Recv ZPIEZORD 32880
17-03-17 19:23:12.688 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:12.688 -07 000000501 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.845 V. Piezo Error = -8.2 V.
17-03-17 19:23:12.688 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36584 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36585 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36576 (-174.4 uncal um), Max = 36589 (-174.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:23:12.688 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36584, posNoise = 5, negNoise = 8
17-03-17 19:23:12.688 -07 000000501 INF: Z Motor: After move to -0.175335, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:12.688 -07 000000501 INF: Z Motor: Settle wait time = 1429 ms, measure time = 108 ms (allowed 150 ms), total time = 1537 ms
17-03-17 19:23:12.688 -07 000000501 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:23:12.738 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 19:23:12.738 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:23:12.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:12.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:12.738 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:12.738 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:23:12.738 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:12.738 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:12.738 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:12.738 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:23:12.748 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms.
17-03-17 19:23:12.748 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:23:12.748 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:23:12.748 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:23:12.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:23:12.798 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:23:12.998 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:23:12.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:23:12.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:23:12.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2661347256, 0x0, 559484976) start.
17-03-17 19:23:13.038 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:23:13.038 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 19:23:13.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 287 ms overall
17-03-17 19:23:13.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2661347256, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 19:23:13.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:13.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:23:13.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:23:13.138 -07 000000478 INF: Autofocus start
17-03-17 19:23:13.138 -07 000000478 INF: MeasureProfile start
17-03-17 19:23:13.148 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:13.148 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:13.148 -07 000000478 INF: MeasureProfile done
17-03-17 19:23:13.148 -07 000000478 INF: X=112  Z correction [um]=0.5011052
17-03-17 19:23:13.148 -07 000000478 INF: Autofocus finished
17-03-17 19:23:13.158 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:23:13.158 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:23:13.358 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:23:13.358 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:23:13.358 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175346729005318. ----------
17-03-17 19:23:13.358 -07 000000610 INF: Cycle	25	Tile	11	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:23:13.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36924, sync = True, waitForSettling = True)
17-03-17 19:23:13.368 -07 000000610 INF: Z Motor: Moving to -0.169027 mm, started at -0.175347 mm, distance = 6.32 um
17-03-17 19:23:13.368 -07 000000610 INF: FPGA: Xmit ZDACW 36924\n [Z Motor]
17-03-17 19:23:13.368 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:23:13.378 -07 000000610 INF: FPGA: 'ZDACW 36924' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:23:13.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:13.378 -07 000000480 INF: FPGA: Recv ZDACR 36924
17-03-17 19:23:13.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:13.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:23:13.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:13.538 -07 000000480 INF: FPGA: Recv ZSGSRD 35599
17-03-17 19:23:13.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:13.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:13.548 -07 000000561 INF: FPGA: Recv ZSGSRD 35601
17-03-17 19:23:13.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:13.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:13.558 -07 000000480 INF: FPGA: Recv ZSGSRD 35600
17-03-17 19:23:13.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:13.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:13.568 -07 000000501 INF: FPGA: Recv ZSGSRD 35601
17-03-17 19:23:13.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:13.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:13.578 -07 000000626 INF: FPGA: Recv ZSGSRD 35603
17-03-17 19:23:13.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:13.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:13.588 -07 000000623 INF: FPGA: Recv ZSGSRD 35600
17-03-17 19:23:13.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:13.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:13.598 -07 000000475 INF: FPGA: Recv ZSGSRD 35603
17-03-17 19:23:13.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:13.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:13.608 -07 000000501 INF: FPGA: Recv ZSGSRD 35597
17-03-17 19:23:13.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:13.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:13.618 -07 000000618 INF: FPGA: Recv ZSGSRD 35599
17-03-17 19:23:13.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:13.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:13.628 -07 000000623 INF: FPGA: Recv ZSGSRD 35604
17-03-17 19:23:13.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:13.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:13.638 -07 000000626 INF: FPGA: Recv ZPIEZORD 31532
17-03-17 19:23:13.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:13.648 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.634 V. Piezo Error = -9.0 V.
17-03-17 19:23:13.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35601 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35600 (-168.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35597 (-168.1 uncal um), Max = 35604 (-168.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:23:13.648 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35601, posNoise = 3, negNoise = 4
17-03-17 19:23:13.648 -07 000000610 INF: Z Motor: After move to -0.169027, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:13.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:23:13.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:13.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:13.648 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:13.648 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:23:13.648 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:13.648 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:23:13.648 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:23:13.648 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:13.648 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:23:13.648 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:23:13.648 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:23:13.648 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:23:13.658 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:23:13.658 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:23:13.658 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:23:13.658 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:23:13.668 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:23:13.668 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:23:13.668 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:23:13.668 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:23:13.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 37101 150\n [Camera]
17-03-17 19:23:13.878 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:23:14.278 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:23:14.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:23:14.278 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:14.278 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:14.278 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1059328048, 0x0, 391868352) start.
17-03-17 19:23:14.278 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:23:14.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:23:14.278 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:14.278 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:14.278 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1094750312, 0x0, 418435064) start.
17-03-17 19:23:14.468 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37101 786
17-03-17 19:23:14.618 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:23:14.678 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1059328048, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:23:14.678 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:23:14.678 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:14.678 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1094750312, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 19:23:14.678 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:23:14.678 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:14.678 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:14.678 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:23:14.678 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:14.688 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 19:23:14.808 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:23:14.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:23:14.808 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:14.808 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:14.808 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1130172576, 0x0, 391868352) start.
17-03-17 19:23:14.818 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:23:14.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:23:14.818 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:14.818 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:14.818 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:23:14.998 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-17 19:23:15.008 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:23:15.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 37101 150' command took 2 ms to send, 1320 ms to get response, and 1328 ms overall
17-03-17 19:23:15.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:23:15.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.169031728469967. ------
17-03-17 19:23:15.008 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:15.008 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17570 mm
17-03-17 19:23:15.008 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:23:15.008 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:23:15.128 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:15.128 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-17 19:23:15.128 -07 000000626 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 19:23:15.128 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:15.128 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38381, sync = True, waitForSettling = False)
17-03-17 19:23:15.128 -07 000000480 INF: Z Motor: Moving to -0.175697 mm, started at -0.169032 mm, distance = -6.67 um
17-03-17 19:23:15.128 -07 000000501 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:23:15.138 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:23:15.138 -07 000000626 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:15.138 -07 000000480 INF: FPGA: Xmit ZDACW 38381\n [Z Motor]
17-03-17 19:23:15.138 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:23:15.138 -07 000000626 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:23:15.138 -07 000000626 INF: Y Motor: Moving 1339 steps-15
17-03-17 19:23:15.148 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:23:15.148 -07 000000480 INF: FPGA: 'ZDACW 38381' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:23:15.158 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:23:15.168 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:15.168 -07 000000501 INF: FPGA: Recv ZDACR 38381
17-03-17 19:23:15.178 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:23:15.178 -07 000000480 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 19:23:15.208 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1130172576, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:23:15.208 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:23:15.208 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:15.218 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:23:15.218 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:23:15.218 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:15.218 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:15.218 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:23:15.218 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:23:15.228 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:23:15.348 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:23:15.348 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 19:23:15.528 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 19:23:15.528 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:23:15.568 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:15.568 -07 000000501 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:23:15.578 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:23:15.578 -07 000000626 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:15.578 -07 000000626 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 19:23:15.578 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.120 mm/sec
17-03-17 19:23:16.528 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:16.528 -07 000000618 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:23:16.538 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:16.538 -07 000000626 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:16.558 -07 000000626 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:23:16.558 -07 000000626 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:23:16.558 -07 000000626 INF: Y Motor: Moved to 69.0273 after 1431 ms (table move)
17-03-17 19:23:16.558 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175697 mm (DAC = 38381)
17-03-17 19:23:16.558 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:16.558 -07 000000561 INF: FPGA: Recv ZSGSRD 36640
17-03-17 19:23:16.568 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:23:16.568 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:16.568 -07 000000480 INF: FPGA: Recv ZSGSRD 36631
17-03-17 19:23:16.578 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:16.578 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:16.578 -07 000000561 INF: FPGA: Recv ZSGSRD 36643
17-03-17 19:23:16.588 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:16.588 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:16.588 -07 000000551 INF: FPGA: Recv ZSGSRD 36641
17-03-17 19:23:16.598 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:16.598 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:16.598 -07 000000476 INF: FPGA: Recv ZSGSRD 36637
17-03-17 19:23:16.608 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:16.608 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:16.608 -07 000000480 INF: FPGA: Recv ZSGSRD 36643
17-03-17 19:23:16.618 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:16.618 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:16.618 -07 000000618 INF: FPGA: Recv ZSGSRD 36636
17-03-17 19:23:16.628 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:16.628 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:16.628 -07 000000626 INF: FPGA: Recv ZSGSRD 36644
17-03-17 19:23:16.638 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:16.638 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:16.638 -07 000000561 INF: FPGA: Recv ZSGSRD 36631
17-03-17 19:23:16.648 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:16.648 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:16.648 -07 000000476 INF: FPGA: Recv ZSGSRD 36639
17-03-17 19:23:16.658 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:16.658 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:16.658 -07 000000501 INF: FPGA: Recv ZPIEZORD 32922
17-03-17 19:23:16.668 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:16.668 -07 000000475 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.857 V. Piezo Error = -8.2 V.
17-03-17 19:23:16.668 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36638 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36640 (-174.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36631 (-174.8 uncal um), Max = 36644 (-174.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:23:16.668 -07 000000475 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36638, posNoise = 6, negNoise = 7
17-03-17 19:23:16.668 -07 000000475 INF: Z Motor: After move to -0.175697, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:16.668 -07 000000475 INF: Z Motor: Settle wait time = 1432 ms, measure time = 106 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:23:16.668 -07 000000475 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:23:16.678 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:23:16.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:23:16.718 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1703 ms
17-03-17 19:23:16.718 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:23:16.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:16.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:16.718 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:16.718 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:23:16.718 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:16.718 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:16.718 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:16.718 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:23:16.728 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:23:16.728 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:23:16.738 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:23:16.738 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 19:23:16.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:23:16.788 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:23:16.988 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:23:16.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:23:16.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:23:16.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:23:17.028 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:23:17.028 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 19:23:17.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 283 ms to get response, and 289 ms overall
17-03-17 19:23:17.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:23:17.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:17.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:23:17.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:23:17.128 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:17.128 -07 000000551 INF: Autofocus start
17-03-17 19:23:17.128 -07 000000551 INF: MeasureProfile start
17-03-17 19:23:17.128 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:17.138 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:23:17.138 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:23:17.148 -07 000000551 INF: MeasureProfile done
17-03-17 19:23:17.148 -07 000000551 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:23:17.148 -07 000000551 INF: Autofocus finished
17-03-17 19:23:17.338 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:23:17.338 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:23:17.338 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.175693636460973. ----------
17-03-17 19:23:17.338 -07 000000610 INF: Cycle	25	Tile	12	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:23:17.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36878, sync = True, waitForSettling = True)
17-03-17 19:23:17.348 -07 000000610 INF: Z Motor: Moving to -0.168817 mm, started at -0.175694 mm, distance = 6.88 um
17-03-17 19:23:17.348 -07 000000610 INF: FPGA: Xmit ZDACW 36878\n [Z Motor]
17-03-17 19:23:17.348 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:23:17.358 -07 000000610 INF: FPGA: 'ZDACW 36878' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:17.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:17.358 -07 000000561 INF: FPGA: Recv ZDACR 36878
17-03-17 19:23:17.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:17.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:23:17.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:17.518 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.970374,
17-03-17 19:23:17.518 -07 000000476 INF: FPGA: Recv ZSGSRD 35570
17-03-17 19:23:17.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:17.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:17.538 -07 000000501 INF: FPGA: Recv ZSGSRD 35570
17-03-17 19:23:17.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:23:17.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:17.548 -07 000000626 INF: FPGA: Recv ZSGSRD 35567
17-03-17 19:23:17.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:17.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:17.578 -07 000000501 INF: FPGA: Recv ZSGSRD 35568
17-03-17 19:23:17.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:23:17.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:17.588 -07 000000501 INF: FPGA: Recv ZSGSRD 35574
17-03-17 19:23:17.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:17.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:17.608 -07 000000475 INF: FPGA: Recv ZSGSRD 35566
17-03-17 19:23:17.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:23:17.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:17.618 -07 000000618 INF: FPGA: Recv ZSGSRD 35571
17-03-17 19:23:17.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:17.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:17.628 -07 000000475 INF: FPGA: Recv ZSGSRD 35576
17-03-17 19:23:17.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:17.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:17.638 -07 000000480 INF: FPGA: Recv ZSGSRD 35566
17-03-17 19:23:17.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:17.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:17.648 -07 000000551 INF: FPGA: Recv ZSGSRD 35565
17-03-17 19:23:17.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:17.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:17.658 -07 000000480 INF: FPGA: Recv ZPIEZORD 31520
17-03-17 19:23:17.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:17.668 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.627 V. Piezo Error = -8.9 V.
17-03-17 19:23:17.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35569 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35569 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35565 (-167.9 uncal um), Max = 35576 (-168.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:23:17.668 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35569, posNoise = 7, negNoise = 4
17-03-17 19:23:17.668 -07 000000610 INF: Z Motor: After move to -0.168817, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:17.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 321 ms)
17-03-17 19:23:17.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:17.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:17.668 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:17.668 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:17.668 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:23:17.668 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:17.668 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:23:17.668 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:23:17.668 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:17.668 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:23:17.668 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:23:17.668 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:23:17.668 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:23:17.668 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:23:17.678 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:23:17.678 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:23:17.678 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:23:17.678 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:23:17.688 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:23:17.688 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:23:17.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 37055 150\n [Camera]
17-03-17 19:23:17.888 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:23:18.288 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:23:18.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:23:18.288 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:18.288 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:23:18.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:23:18.288 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:18.288 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:18.298 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:23:18.298 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:18.298 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:23:18.478 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37055 786
17-03-17 19:23:18.628 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:23:18.668 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:23:18.668 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:23:18.668 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:18.668 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:23:18.668 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:23:18.668 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:18.678 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:18.678 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:23:18.678 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:18.688 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:23:18.818 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:23:18.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:23:18.828 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:18.828 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:23:18.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:23:18.828 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:18.828 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:18.828 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:23:18.838 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:18.838 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:23:19.018 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:23:19.128 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:23:19.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 37055 150' command took 2 ms to send, 1437 ms to get response, and 1444 ms overall
17-03-17 19:23:19.138 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:23:19.138 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.16882615368143. ------
17-03-17 19:23:19.138 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:19.138 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17514 mm
17-03-17 19:23:19.138 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:23:19.138 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:23:19.138 -07 000000480 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 19:23:19.138 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:19.138 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38259, sync = True, waitForSettling = False)
17-03-17 19:23:19.138 -07 000000561 INF: Z Motor: Moving to -0.175138 mm, started at -0.168826 mm, distance = -6.31 um
17-03-17 19:23:19.148 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:23:19.148 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:19.148 -07 000000012 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:23:19.158 -07 000000561 INF: FPGA: Xmit ZDACW 38259\n [Z Motor]
17-03-17 19:23:19.158 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:23:19.158 -07 000000480 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:19.158 -07 000000480 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:23:19.158 -07 000000480 INF: Y Motor: Moving 1352 steps-31
17-03-17 19:23:19.158 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:23:19.168 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:23:19.168 -07 000000561 INF: FPGA: 'ZDACW 38259' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:23:19.178 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:23:19.188 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:19.188 -07 000000012 INF: FPGA: Recv ZDACR 38259
17-03-17 19:23:19.198 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:23:19.198 -07 000000561 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 19:23:19.218 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:23:19.218 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:23:19.218 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:19.218 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:23:19.218 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:23:19.218 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:19.228 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:19.228 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:23:19.228 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:19.228 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 19:23:19.368 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:23:19.368 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:23:19.548 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:23:19.548 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:23:19.588 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:19.588 -07 000000623 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:23:19.598 -07 000000480 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:23:19.598 -07 000000480 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:19.598 -07 000000480 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:23:19.598 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-17 19:23:20.548 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:20.548 -07 000000476 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:23:20.558 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:20.558 -07 000000480 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:20.578 -07 000000480 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:23:20.578 -07 000000480 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:23:20.578 -07 000000480 INF: Y Motor: Moved to 69.8638 after 1435 ms (table move)
17-03-17 19:23:20.578 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175138 mm (DAC = 38259)
17-03-17 19:23:20.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:20.578 -07 000000561 INF: FPGA: Recv ZSGSRD 36555
17-03-17 19:23:20.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:23:20.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:20.588 -07 000000561 INF: FPGA: Recv ZSGSRD 36552
17-03-17 19:23:20.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:20.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:20.598 -07 000000551 INF: FPGA: Recv ZSGSRD 36551
17-03-17 19:23:20.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:20.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:20.608 -07 000000561 INF: FPGA: Recv ZSGSRD 36561
17-03-17 19:23:20.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:20.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:20.618 -07 000000551 INF: FPGA: Recv ZSGSRD 36559
17-03-17 19:23:20.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:20.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:20.628 -07 000000480 INF: FPGA: Recv ZSGSRD 36553
17-03-17 19:23:20.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:20.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:20.638 -07 000000475 INF: FPGA: Recv ZSGSRD 36550
17-03-17 19:23:20.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:20.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:20.648 -07 000000480 INF: FPGA: Recv ZSGSRD 36545
17-03-17 19:23:20.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:20.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:20.658 -07 000000012 INF: FPGA: Recv ZSGSRD 36550
17-03-17 19:23:20.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:20.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:20.668 -07 000000561 INF: FPGA: Recv ZSGSRD 36555
17-03-17 19:23:20.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:20.678 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:20.678 -07 000000012 INF: FPGA: Recv ZPIEZORD 32843
17-03-17 19:23:20.688 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:20.688 -07 000000431 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.838 V. Piezo Error = -8.2 V.
17-03-17 19:23:20.688 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36553 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36552 (-174.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36545 (-174.2 uncal um), Max = 36561 (-174.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:23:20.688 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36553, posNoise = 8, negNoise = 8
17-03-17 19:23:20.688 -07 000000431 INF: Z Motor: After move to -0.175138, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:20.688 -07 000000431 INF: Z Motor: Settle wait time = 1437 ms, measure time = 106 ms (allowed 150 ms), total time = 1543 ms
17-03-17 19:23:20.688 -07 000000431 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:23:20.738 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 19:23:20.738 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:23:20.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:20.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:20.738 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:20.738 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:20.738 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:23:20.738 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:20.738 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:20.738 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:23:20.748 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:23:20.748 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:23:20.748 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:23:20.748 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:23:20.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:23:20.798 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:23:20.998 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:23:20.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:23:20.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:23:20.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:23:21.038 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:23:21.038 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:23:21.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:23:21.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:23:21.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:21.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:23:21.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:23:21.138 -07 000000623 INF: Autofocus start
17-03-17 19:23:21.138 -07 000000623 INF: MeasureProfile start
17-03-17 19:23:21.138 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:21.148 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:21.148 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 7 ms overall
17-03-17 19:23:21.148 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:23:21.148 -07 000000623 INF: MeasureProfile done
17-03-17 19:23:21.148 -07 000000623 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:23:21.148 -07 000000623 INF: Autofocus finished
17-03-17 19:23:21.348 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:23:21.348 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 19:23:21.348 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.175147578428923. ----------
17-03-17 19:23:21.358 -07 000000610 INF: Cycle	25	Tile	13	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:23:21.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36792, sync = True, waitForSettling = True)
17-03-17 19:23:21.358 -07 000000610 INF: Z Motor: Moving to -0.168423 mm, started at -0.175148 mm, distance = 6.72 um
17-03-17 19:23:21.358 -07 000000610 INF: FPGA: Xmit ZDACW 36792\n [Z Motor]
17-03-17 19:23:21.358 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:23:21.368 -07 000000610 INF: FPGA: 'ZDACW 36792' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:23:21.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:21.368 -07 000000012 INF: FPGA: Recv ZDACR 36792
17-03-17 19:23:21.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:21.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:23:21.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:21.528 -07 000000561 INF: FPGA: Recv ZSGSRD 35507
17-03-17 19:23:21.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:21.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:21.538 -07 000000012 INF: FPGA: Recv ZSGSRD 35507
17-03-17 19:23:21.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:21.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:21.548 -07 000000561 INF: FPGA: Recv ZSGSRD 35504
17-03-17 19:23:21.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:21.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:21.558 -07 000000012 INF: FPGA: Recv ZSGSRD 35509
17-03-17 19:23:21.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:21.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:21.568 -07 000000561 INF: FPGA: Recv ZSGSRD 35506
17-03-17 19:23:21.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:21.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:21.578 -07 000000551 INF: FPGA: Recv ZSGSRD 35505
17-03-17 19:23:21.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:21.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:21.588 -07 000000431 INF: FPGA: Recv ZSGSRD 35511
17-03-17 19:23:21.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:21.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:21.598 -07 000000551 INF: FPGA: Recv ZSGSRD 35516
17-03-17 19:23:21.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:21.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:21.608 -07 000000431 INF: FPGA: Recv ZSGSRD 35507
17-03-17 19:23:21.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:21.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:21.618 -07 000000012 INF: FPGA: Recv ZSGSRD 35506
17-03-17 19:23:21.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:21.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:21.628 -07 000000476 INF: FPGA: Recv ZPIEZORD 31388
17-03-17 19:23:21.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:21.638 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.614 V. Piezo Error = -9.1 V.
17-03-17 19:23:21.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35508 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35507 (-167.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35504 (-167.5 uncal um), Max = 35516 (-167.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:23:21.638 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35508, posNoise = 8, negNoise = 4
17-03-17 19:23:21.638 -07 000000610 INF: Z Motor: After move to -0.168423, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:21.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:23:21.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:21.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:21.638 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:21.638 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:21.638 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:23:21.638 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:21.638 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:23:21.638 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:23:21.638 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:23:21.638 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:23:21.638 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:23:21.638 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:23:21.648 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:23:21.648 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:23:21.648 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:23:21.648 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:23:21.658 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:23:21.658 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:23:21.658 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:23:21.658 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:23:21.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 36969 150\n [Camera]
17-03-17 19:23:21.678 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:23:21.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:23:21.858 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:23:22.258 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:23:22.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:23:22.258 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:22.268 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:23:22.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:23:22.268 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:22.268 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:22.268 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:23:22.268 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:22.268 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:23:22.458 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36969 786
17-03-17 19:23:22.598 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:23:22.658 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:23:22.658 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:23:22.658 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:22.668 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 19:23:22.668 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:23:22.668 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:22.668 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:22.668 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:23:22.668 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:22.678 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:23:22.798 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:23:22.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:23:22.798 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:22.798 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:22.798 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:23:22.798 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:23:22.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:23:22.798 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:22.798 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:22.808 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 19:23:22.928 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.996267,
17-03-17 19:23:22.988 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:23:22.988 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:23:22.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 36969 150' command took 2 ms to send, 1325 ms to get response, and 1329 ms overall
17-03-17 19:23:22.988 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:23:22.988 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.168434276740783. ------
17-03-17 19:23:22.998 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:22.998 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17483 mm
17-03-17 19:23:22.998 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:23:22.998 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:23:22.998 -07 000000476 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 19:23:22.998 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:22.998 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38191, sync = True, waitForSettling = False)
17-03-17 19:23:22.998 -07 000000475 INF: Z Motor: Moving to -0.174827 mm, started at -0.168434 mm, distance = -6.39 um
17-03-17 19:23:23.008 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:23.008 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:23.008 -07 000000608 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:23:23.018 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:23:23.018 -07 000000476 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:23.018 -07 000000476 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:23:23.018 -07 000000476 INF: Y Motor: Moving 1342 steps-18
17-03-17 19:23:23.018 -07 000000475 INF: FPGA: Xmit ZDACW 38191\n [Z Motor]
17-03-17 19:23:23.018 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:23:23.028 -07 000000475 INF: FPGA: 'ZDACW 38191' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:23:23.028 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:23:23.038 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:23:23.048 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:23.048 -07 000000541 INF: FPGA: Recv ZDACR 38191
17-03-17 19:23:23.058 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:23:23.058 -07 000000475 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 19:23:23.188 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:23:23.188 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:23:23.188 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:23.198 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:23.198 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:23:23.198 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:23:23.198 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:23.198 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:23.198 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:23:23.208 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:23:23.228 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:23:23.228 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:23:23.408 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:23:23.408 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:23:23.448 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:23.448 -07 000000618 INF: FPGA: Recv YRDPOS 144770
17-03-17 19:23:23.458 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:23:23.458 -07 000000476 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:23.458 -07 000000476 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:23:23.458 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 19:23:24.408 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:24.408 -07 000000475 INF: FPGA: Recv YRDPOS 144770
17-03-17 19:23:24.418 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:24.418 -07 000000476 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:24.438 -07 000000476 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:23:24.438 -07 000000476 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:23:24.438 -07 000000476 INF: Y Motor: Moved to 70.6885 after 1435 ms (table move)
17-03-17 19:23:24.438 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174827 mm (DAC = 38191)
17-03-17 19:23:24.438 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:24.438 -07 000000501 INF: FPGA: Recv ZSGSRD 36505
17-03-17 19:23:24.448 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:23:24.448 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:24.448 -07 000000623 INF: FPGA: Recv ZSGSRD 36496
17-03-17 19:23:24.458 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:24.458 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:24.458 -07 000000618 INF: FPGA: Recv ZSGSRD 36503
17-03-17 19:23:24.468 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:24.468 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:24.468 -07 000000475 INF: FPGA: Recv ZSGSRD 36511
17-03-17 19:23:24.478 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:24.478 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:24.478 -07 000000501 INF: FPGA: Recv ZSGSRD 36500
17-03-17 19:23:24.488 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:24.488 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:24.488 -07 000000608 INF: FPGA: Recv ZSGSRD 36512
17-03-17 19:23:24.498 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:24.498 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:24.498 -07 000000433 INF: FPGA: Recv ZSGSRD 36508
17-03-17 19:23:24.508 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:24.508 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:24.508 -07 000000431 INF: FPGA: Recv ZSGSRD 36497
17-03-17 19:23:24.518 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:24.518 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:24.518 -07 000000608 INF: FPGA: Recv ZSGSRD 36507
17-03-17 19:23:24.528 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:24.528 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:24.528 -07 000000475 INF: FPGA: Recv ZSGSRD 36499
17-03-17 19:23:24.538 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:24.538 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:24.538 -07 000000618 INF: FPGA: Recv ZPIEZORD 32757
17-03-17 19:23:24.548 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:24.548 -07 000000012 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.3 V.
17-03-17 19:23:24.548 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36504 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36504 (-173.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36496 (-173.9 uncal um), Max = 36512 (-174.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:23:24.548 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36504, posNoise = 8, negNoise = 8
17-03-17 19:23:24.548 -07 000000012 INF: Z Motor: After move to -0.174827, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:24.548 -07 000000012 INF: Z Motor: Settle wait time = 1437 ms, measure time = 105 ms (allowed 150 ms), total time = 1542 ms
17-03-17 19:23:24.548 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:23:24.598 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 19:23:24.598 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:23:24.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:24.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:24.598 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:24.598 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:24.598 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:23:24.598 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:24.598 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:24.598 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:23:24.608 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:23:24.608 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:23:24.618 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:23:24.618 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:23:24.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:23:24.668 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:23:24.868 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:23:24.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:23:24.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:23:24.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 19:23:24.898 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:23:24.908 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 19:23:24.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:23:24.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:23:24.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:24.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:23:24.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:23:25.008 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:25.008 -07 000000012 INF: Autofocus start
17-03-17 19:23:25.008 -07 000000012 INF: MeasureProfile start
17-03-17 19:23:25.008 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:25.018 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:23:25.018 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:23:25.018 -07 000000012 INF: MeasureProfile done
17-03-17 19:23:25.018 -07 000000012 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:23:25.018 -07 000000012 INF: Autofocus finished
17-03-17 19:23:25.218 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:23:25.218 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 19:23:25.218 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.174832792033977. ----------
17-03-17 19:23:25.218 -07 000000610 INF: Cycle	25	Tile	14	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:23:25.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36706, sync = True, waitForSettling = True)
17-03-17 19:23:25.228 -07 000000610 INF: Z Motor: Moving to -0.168029 mm, started at -0.174833 mm, distance = 6.80 um
17-03-17 19:23:25.228 -07 000000610 INF: FPGA: Xmit ZDACW 36706\n [Z Motor]
17-03-17 19:23:25.228 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:23:25.238 -07 000000610 INF: FPGA: 'ZDACW 36706' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:25.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:25.238 -07 000000012 INF: FPGA: Recv ZDACR 36706
17-03-17 19:23:25.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:25.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:23:25.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:25.398 -07 000000561 INF: FPGA: Recv ZSGSRD 35449
17-03-17 19:23:25.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:25.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:25.408 -07 000000618 INF: FPGA: Recv ZSGSRD 35444
17-03-17 19:23:25.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:25.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:25.418 -07 000000475 INF: FPGA: Recv ZSGSRD 35443
17-03-17 19:23:25.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:25.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:25.428 -07 000000618 INF: FPGA: Recv ZSGSRD 35443
17-03-17 19:23:25.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:25.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:25.438 -07 000000486 INF: FPGA: Recv ZSGSRD 35450
17-03-17 19:23:25.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:25.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:25.448 -07 000000012 INF: FPGA: Recv ZSGSRD 35443
17-03-17 19:23:25.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:25.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:25.458 -07 000000486 INF: FPGA: Recv ZSGSRD 35443
17-03-17 19:23:25.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:25.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:25.468 -07 000000012 INF: FPGA: Recv ZSGSRD 35446
17-03-17 19:23:25.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:25.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:25.478 -07 000000480 INF: FPGA: Recv ZSGSRD 35449
17-03-17 19:23:25.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:25.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:25.488 -07 000000561 INF: FPGA: Recv ZSGSRD 35443
17-03-17 19:23:25.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:25.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:25.498 -07 000000480 INF: FPGA: Recv ZPIEZORD 31319
17-03-17 19:23:25.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:25.508 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -9.1 V.
17-03-17 19:23:25.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35445 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35444 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35443 (-167.1 uncal um), Max = 35450 (-167.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 19:23:25.508 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35445, posNoise = 5, negNoise = 2
17-03-17 19:23:25.508 -07 000000610 INF: Z Motor: After move to -0.168029, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:25.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:23:25.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:25.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:25.508 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:25.508 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:25.508 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:23:25.508 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:23:25.508 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:23:25.508 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:25.508 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:23:25.508 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:23:25.508 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:25.508 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:23:25.518 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:23:25.518 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:23:25.518 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:23:25.518 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:23:25.518 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:23:25.518 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:23:25.518 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:23:25.528 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:23:25.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 36882 150\n [Camera]
17-03-17 19:23:25.728 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:23:26.128 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:23:26.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:23:26.128 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:26.128 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:26.128 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1059328048, 0x0, 391868352) start.
17-03-17 19:23:26.128 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:23:26.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:23:26.128 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:26.128 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:26.128 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1094750312, 0x0, 418435064) start.
17-03-17 19:23:26.318 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36882 786
17-03-17 19:23:26.468 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:23:26.508 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1094750312, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:23:26.508 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:23:26.508 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:26.508 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:26.508 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1059328048, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:23:26.508 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:23:26.508 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:26.518 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:23:26.518 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:26.518 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:23:26.658 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:23:26.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:23:26.658 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:26.658 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:26.668 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1130172576, 0x0, 391868352) start.
17-03-17 19:23:26.668 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:23:26.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:23:26.668 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:26.668 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:26.668 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:23:26.678 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:23:26.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:23:26.848 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-17 19:23:26.858 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:23:26.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 36882 150' command took 4 ms to send, 1320 ms to get response, and 1328 ms overall
17-03-17 19:23:26.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:23:26.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.168029551375852. ------
17-03-17 19:23:26.988 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17461 mm
17-03-17 19:23:26.988 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:23:26.988 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:26.988 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:23:26.988 -07 000000480 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 19:23:26.988 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38143, sync = True, waitForSettling = False)
17-03-17 19:23:26.988 -07 000000012 INF: Z Motor: Moving to -0.174607 mm, started at -0.168030 mm, distance = -6.58 um
17-03-17 19:23:26.988 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:26.998 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:23:26.998 -07 000000012 INF: FPGA: Xmit ZDACW 38143\n [Z Motor]
17-03-17 19:23:26.998 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:23:27.008 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:27.008 -07 000000012 INF: FPGA: 'ZDACW 38143' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:23:27.008 -07 000000501 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:23:27.018 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:23:27.018 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:23:27.018 -07 000000480 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:27.018 -07 000000480 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:23:27.018 -07 000000480 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:23:27.028 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:27.028 -07 000000541 INF: FPGA: Recv ZDACR 38143
17-03-17 19:23:27.038 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:23:27.038 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:23:27.038 -07 000000012 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 19:23:27.048 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1130172576, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:23:27.058 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:23:27.058 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:23:27.058 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:27.058 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:23:27.058 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:27.058 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:27.058 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:23:27.058 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:23:27.068 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:23:27.218 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:23:27.218 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:23:27.408 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:23:27.408 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:23:27.448 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:27.448 -07 000000431 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:23:27.458 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:23:27.458 -07 000000480 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:27.458 -07 000000480 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:23:27.458 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-17 19:23:28.288 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.008536,
17-03-17 19:23:28.408 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:28.408 -07 000000618 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:23:28.418 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:28.418 -07 000000480 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:28.438 -07 000000480 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:23:28.438 -07 000000480 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:23:28.438 -07 000000480 INF: Y Motor: Moved to 71.5190 after 1447 ms (table move)
17-03-17 19:23:28.438 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174607 mm (DAC = 38143)
17-03-17 19:23:28.438 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:28.438 -07 000000480 INF: FPGA: Recv ZSGSRD 36470
17-03-17 19:23:28.448 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:23:28.448 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:28.448 -07 000000431 INF: FPGA: Recv ZSGSRD 36467
17-03-17 19:23:28.458 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:28.458 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:28.458 -07 000000486 INF: FPGA: Recv ZSGSRD 36470
17-03-17 19:23:28.468 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:28.468 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:28.468 -07 000000541 INF: FPGA: Recv ZSGSRD 36472
17-03-17 19:23:28.478 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:28.478 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:28.478 -07 000000608 INF: FPGA: Recv ZSGSRD 36478
17-03-17 19:23:28.488 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:28.488 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:28.488 -07 000000608 INF: FPGA: Recv ZSGSRD 36476
17-03-17 19:23:28.498 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:28.498 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:28.498 -07 000000480 INF: FPGA: Recv ZSGSRD 36471
17-03-17 19:23:28.508 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:28.508 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:28.508 -07 000000541 INF: FPGA: Recv ZSGSRD 36471
17-03-17 19:23:28.518 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:28.518 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:28.518 -07 000000480 INF: FPGA: Recv ZSGSRD 36465
17-03-17 19:23:28.528 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:28.528 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:28.528 -07 000000431 INF: FPGA: Recv ZSGSRD 36462
17-03-17 19:23:28.538 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:28.538 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:28.538 -07 000000478 INF: FPGA: Recv ZPIEZORD 32738
17-03-17 19:23:28.548 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:28.548 -07 000000561 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.820 V. Piezo Error = -8.3 V.
17-03-17 19:23:28.548 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36470 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36470 (-173.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36462 (-173.7 uncal um), Max = 36478 (-173.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:23:28.548 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36470, posNoise = 8, negNoise = 8
17-03-17 19:23:28.548 -07 000000561 INF: Z Motor: After move to -0.174607, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:28.548 -07 000000561 INF: Z Motor: Settle wait time = 1450 ms, measure time = 106 ms (allowed 150 ms), total time = 1556 ms
17-03-17 19:23:28.548 -07 000000561 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:23:28.598 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 19:23:28.598 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:23:28.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:28.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:28.598 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:28.598 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:23:28.598 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:28.598 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:28.598 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 19:23:28.598 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:23:28.608 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:23:28.608 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:23:28.608 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:23:28.608 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:23:28.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:23:28.658 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:23:28.858 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:23:28.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:23:28.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:23:28.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:23:28.898 -07 000000475 INF: FPGA: Recv @CAMSNAP 282
17-03-17 19:23:28.898 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 19:23:28.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 292 ms overall
17-03-17 19:23:28.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:23:28.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:28.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:23:28.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:23:29.008 -07 000000431 INF: Autofocus start
17-03-17 19:23:29.008 -07 000000431 INF: MeasureProfile start
17-03-17 19:23:29.008 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:29.008 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:29.018 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:23:29.018 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:23:29.018 -07 000000431 INF: MeasureProfile done
17-03-17 19:23:29.018 -07 000000431 INF: X=48  Z correction [um]=0.1739867
17-03-17 19:23:29.018 -07 000000431 INF: Autofocus finished
17-03-17 19:23:29.218 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:23:29.218 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 199 ms to get response, and 208 ms overall
17-03-17 19:23:29.228 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174614368821157. ----------
17-03-17 19:23:29.228 -07 000000610 INF: Cycle	25	Tile	15	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:23:29.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36693, sync = True, waitForSettling = True)
17-03-17 19:23:29.228 -07 000000610 INF: Z Motor: Moving to -0.167970 mm, started at -0.174614 mm, distance = 6.64 um
17-03-17 19:23:29.228 -07 000000610 INF: FPGA: Xmit ZDACW 36693\n [Z Motor]
17-03-17 19:23:29.238 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:23:29.238 -07 000000610 INF: FPGA: 'ZDACW 36693' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:23:29.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:29.238 -07 000000561 INF: FPGA: Recv ZDACR 36693
17-03-17 19:23:29.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:29.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:23:29.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:29.398 -07 000000561 INF: FPGA: Recv ZSGSRD 35435
17-03-17 19:23:29.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:29.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:29.408 -07 000000561 INF: FPGA: Recv ZSGSRD 35439
17-03-17 19:23:29.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:29.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:29.418 -07 000000561 INF: FPGA: Recv ZSGSRD 35435
17-03-17 19:23:29.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:29.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:29.428 -07 000000486 INF: FPGA: Recv ZSGSRD 35434
17-03-17 19:23:29.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:29.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:29.438 -07 000000501 INF: FPGA: Recv ZSGSRD 35439
17-03-17 19:23:29.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:29.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:29.448 -07 000000475 INF: FPGA: Recv ZSGSRD 35432
17-03-17 19:23:29.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:29.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:29.458 -07 000000618 INF: FPGA: Recv ZSGSRD 35438
17-03-17 19:23:29.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:29.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:29.468 -07 000000618 INF: FPGA: Recv ZSGSRD 35436
17-03-17 19:23:29.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:29.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:29.478 -07 000000618 INF: FPGA: Recv ZSGSRD 35435
17-03-17 19:23:29.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:29.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:29.488 -07 000000618 INF: FPGA: Recv ZSGSRD 35436
17-03-17 19:23:29.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:29.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:29.498 -07 000000618 INF: FPGA: Recv ZPIEZORD 31339
17-03-17 19:23:29.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:29.508 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.599 V. Piezo Error = -9.0 V.
17-03-17 19:23:29.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35436 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35436 (-167.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35432 (-167.1 uncal um), Max = 35439 (-167.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:23:29.508 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35436, posNoise = 3, negNoise = 4
17-03-17 19:23:29.508 -07 000000610 INF: Z Motor: After move to -0.167970, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:29.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 19:23:29.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:29.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:29.508 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:29.508 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:29.508 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:23:29.508 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:23:29.508 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:23:29.508 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:29.508 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:23:29.508 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:23:29.508 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:29.508 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:23:29.518 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:23:29.518 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:23:29.518 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:23:29.518 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:23:29.528 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 19:23:29.528 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:23:29.528 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 19:23:29.528 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:23:29.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 36870 150\n [Camera]
17-03-17 19:23:29.738 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:23:30.148 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:23:30.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:23:30.148 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:30.148 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:30.148 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:23:30.148 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:23:30.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:23:30.148 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:30.158 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:30.158 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:23:30.338 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36870 786
17-03-17 19:23:30.488 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:23:30.538 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:23:30.538 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:23:30.538 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:30.548 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:30.548 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:23:30.548 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:23:30.548 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:23:30.548 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:30.558 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:30.558 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:23:30.678 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:23:30.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:23:30.678 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:30.688 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:23:30.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:23:30.688 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:30.688 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:30.688 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1059328048, 0x0, 391868352) start.
17-03-17 19:23:30.698 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:30.698 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1094750312, 0x0, 418435064) start.
17-03-17 19:23:30.868 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:23:30.868 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:23:30.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 36870 150' command took 2 ms to send, 1319 ms to get response, and 1342 ms overall
17-03-17 19:23:30.878 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:23:30.878 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167971733466576. ------
17-03-17 19:23:30.878 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:30.878 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17387 mm
17-03-17 19:23:30.878 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:23:30.988 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:30.988 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 115 ms overall
17-03-17 19:23:30.988 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:23:30.988 -07 000000431 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 19:23:30.988 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:23:30.988 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 37982, sync = True, waitForSettling = False)
17-03-17 19:23:30.988 -07 000000608 INF: Z Motor: Moving to -0.173870 mm, started at -0.167972 mm, distance = -5.90 um
17-03-17 19:23:30.998 -07 000000608 INF: FPGA: Xmit ZDACW 37982\n [Z Motor]
17-03-17 19:23:30.998 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:23:31.008 -07 000000608 INF: FPGA: 'ZDACW 37982' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:31.008 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:31.008 -07 000000478 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:23:31.018 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 19:23:31.018 -07 000000431 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:31.018 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:31.018 -07 000000480 INF: FPGA: Recv ZDACR 37982
17-03-17 19:23:31.018 -07 000000431 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:23:31.018 -07 000000431 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:23:31.028 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:23:31.028 -07 000000608 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 19:23:31.028 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:23:31.088 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1094750312, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 19:23:31.088 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:23:31.088 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:31.088 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1059328048, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:23:31.088 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:23:31.088 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:31.088 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:31.098 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:31.098 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 19:23:31.098 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:23:31.198 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:23:31.198 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 202 ms to get response, and 202 ms overall
17-03-17 19:23:31.398 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 19:23:31.398 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 19:23:31.438 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:31.438 -07 000000608 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:23:31.448 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:23:31.448 -07 000000431 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:31.448 -07 000000431 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:23:31.448 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.844 mm, average velocity = 2.191 mm/sec
17-03-17 19:23:31.678 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:23:31.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:23:32.398 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:32.398 -07 000000501 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:23:32.408 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:32.408 -07 000000431 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:32.428 -07 000000431 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:23:32.428 -07 000000431 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:23:32.428 -07 000000431 INF: Y Motor: Moved to 72.3496 after 1433 ms (table move)
17-03-17 19:23:32.428 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173870 mm (DAC = 37982)
17-03-17 19:23:32.428 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:32.428 -07 000000501 INF: FPGA: Recv ZSGSRD 36352
17-03-17 19:23:32.438 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:23:32.438 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:32.438 -07 000000608 INF: FPGA: Recv ZSGSRD 36351
17-03-17 19:23:32.448 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:32.448 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:32.448 -07 000000480 INF: FPGA: Recv ZSGSRD 36351
17-03-17 19:23:32.458 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:32.458 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:32.458 -07 000000608 INF: FPGA: Recv ZSGSRD 36358
17-03-17 19:23:32.468 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:32.468 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:32.468 -07 000000480 INF: FPGA: Recv ZSGSRD 36358
17-03-17 19:23:32.478 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:32.478 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:32.478 -07 000000608 INF: FPGA: Recv ZSGSRD 36356
17-03-17 19:23:32.488 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:32.488 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:32.488 -07 000000501 INF: FPGA: Recv ZSGSRD 36352
17-03-17 19:23:32.498 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:32.498 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:32.498 -07 000000478 INF: FPGA: Recv ZSGSRD 36351
17-03-17 19:23:32.508 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:32.508 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:32.508 -07 000000501 INF: FPGA: Recv ZSGSRD 36354
17-03-17 19:23:32.518 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:32.518 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:32.518 -07 000000478 INF: FPGA: Recv ZSGSRD 36353
17-03-17 19:23:32.528 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:32.528 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:32.528 -07 000000561 INF: FPGA: Recv ZPIEZORD 32570
17-03-17 19:23:32.538 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:32.538 -07 000000486 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.796 V. Piezo Error = -8.4 V.
17-03-17 19:23:32.538 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36354 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36352 (-173.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36351 (-173.0 uncal um), Max = 36358 (-173.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:23:32.538 -07 000000486 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36354, posNoise = 4, negNoise = 3
17-03-17 19:23:32.538 -07 000000486 INF: Z Motor: After move to -0.173870, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:32.538 -07 000000486 INF: Z Motor: Settle wait time = 1436 ms, measure time = 104 ms (allowed 150 ms), total time = 1540 ms
17-03-17 19:23:32.538 -07 000000486 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:23:32.588 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1706 ms
17-03-17 19:23:32.588 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:23:32.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:32.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:32.588 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:32.588 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:32.598 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:23:32.598 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:32.598 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:32.598 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:23:32.598 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:23:32.598 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:23:32.608 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:23:32.608 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:23:32.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:23:32.648 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:23:32.848 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:23:32.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:23:32.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:23:32.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:23:32.888 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:23:32.888 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 19:23:32.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 19:23:32.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:23:32.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:32.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:23:32.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:23:32.988 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:32.988 -07 000000608 INF: Autofocus start
17-03-17 19:23:32.988 -07 000000608 INF: MeasureProfile start
17-03-17 19:23:32.988 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:32.998 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:23:32.998 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:23:32.998 -07 000000608 INF: MeasureProfile done
17-03-17 19:23:32.998 -07 000000608 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:23:32.998 -07 000000608 INF: Autofocus finished
17-03-17 19:23:33.198 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:23:33.198 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:23:33.198 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173869160212713. ----------
17-03-17 19:23:33.198 -07 000000610 INF: Cycle	25	Tile	16	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:23:33.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36479, sync = True, waitForSettling = True)
17-03-17 19:23:33.208 -07 000000610 INF: Z Motor: Moving to -0.166990 mm, started at -0.173869 mm, distance = 6.88 um
17-03-17 19:23:33.208 -07 000000610 INF: FPGA: Xmit ZDACW 36479\n [Z Motor]
17-03-17 19:23:33.208 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 19:23:33.218 -07 000000610 INF: FPGA: 'ZDACW 36479' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:33.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:33.218 -07 000000608 INF: FPGA: Recv ZDACR 36479
17-03-17 19:23:33.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:33.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:23:33.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:33.378 -07 000000618 INF: FPGA: Recv ZSGSRD 35286
17-03-17 19:23:33.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:33.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:33.388 -07 000000608 INF: FPGA: Recv ZSGSRD 35292
17-03-17 19:23:33.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:33.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:33.398 -07 000000561 INF: FPGA: Recv ZSGSRD 35282
17-03-17 19:23:33.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:33.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:33.408 -07 000000486 INF: FPGA: Recv ZSGSRD 35286
17-03-17 19:23:33.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:33.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:33.418 -07 000000478 INF: FPGA: Recv ZSGSRD 35288
17-03-17 19:23:33.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:33.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:33.438 -07 000000561 INF: FPGA: Recv ZSGSRD 35284
17-03-17 19:23:33.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 19:23:33.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:33.438 -07 000000501 INF: FPGA: Recv ZSGSRD 35287
17-03-17 19:23:33.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:23:33.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:33.448 -07 000000608 INF: FPGA: Recv ZSGSRD 35284
17-03-17 19:23:33.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:33.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:33.458 -07 000000480 INF: FPGA: Recv ZSGSRD 35284
17-03-17 19:23:33.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:33.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:33.468 -07 000000608 INF: FPGA: Recv ZSGSRD 35291
17-03-17 19:23:33.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:33.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:33.478 -07 000000501 INF: FPGA: Recv ZPIEZORD 31137
17-03-17 19:23:33.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:33.488 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.566 V. Piezo Error = -9.1 V.
17-03-17 19:23:33.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35286 (-166.1 uncal um), Error = 0.8 uncal um, Median = 35286 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35282 (-166.1 uncal um), Max = 35292 (-166.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:23:33.488 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35286, posNoise = 6, negNoise = 4
17-03-17 19:23:33.488 -07 000000610 INF: Z Motor: After move to -0.166990, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:33.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:23:33.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:33.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:33.488 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:33.488 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:33.488 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:23:33.488 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:33.488 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:23:33.488 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:23:33.488 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:23:33.488 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:23:33.488 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:23:33.488 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:23:33.488 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:23:33.488 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:23:33.498 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:23:33.498 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:23:33.498 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:23:33.498 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:23:33.508 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:23:33.508 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:23:33.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 36656 150\n [Camera]
17-03-17 19:23:33.648 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.016692,
17-03-17 19:23:33.708 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:23:34.108 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:23:34.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:23:34.108 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:34.108 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:23:34.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:23:34.118 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:34.118 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:34.118 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:23:34.118 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:34.118 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:23:34.308 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36656 788
17-03-17 19:23:34.448 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:23:34.508 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:23:34.508 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:23:34.508 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:34.518 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:23:34.518 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:23:34.518 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:34.518 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:34.518 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:23:34.518 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:34.528 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:23:34.648 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:23:34.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:23:34.648 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:34.648 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:34.648 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:23:34.648 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:23:34.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:23:34.648 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:34.648 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:34.648 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1130172576, 0x0, 418435064) start.
17-03-17 19:23:34.838 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:23:34.838 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:23:34.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 36656 150' command took 2 ms to send, 1324 ms to get response, and 1328 ms overall
17-03-17 19:23:34.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:23:34.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.167008101645312. ------
17-03-17 19:23:34.848 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:34.848 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17356 mm
17-03-17 19:23:34.848 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:23:34.848 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:23:34.848 -07 000000618 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 19:23:34.848 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37914, sync = True, waitForSettling = False)
17-03-17 19:23:34.848 -07 000000480 INF: Z Motor: Moving to -0.173559 mm, started at -0.167008 mm, distance = -6.55 um
17-03-17 19:23:34.848 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:34.858 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:34.858 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:34.858 -07 000000431 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:23:34.868 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:23:34.868 -07 000000618 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:34.868 -07 000000618 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:23:34.868 -07 000000618 INF: Y Motor: Moving 1349 steps-27
17-03-17 19:23:34.868 -07 000000480 INF: FPGA: Xmit ZDACW 37914\n [Z Motor]
17-03-17 19:23:34.868 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 19:23:34.878 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:23:34.878 -07 000000480 INF: FPGA: 'ZDACW 37914' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:23:34.888 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:23:34.898 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:34.898 -07 000000431 INF: FPGA: Recv ZDACR 37914
17-03-17 19:23:34.908 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:23:34.908 -07 000000480 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 19:23:35.038 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:23:35.038 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:23:35.038 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:35.038 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1130172576, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:23:35.038 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:23:35.038 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:35.048 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:35.048 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:23:35.048 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:23:35.048 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:23:35.078 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:23:35.078 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:23:35.258 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 19:23:35.258 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:23:35.298 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:35.298 -07 000000626 INF: FPGA: Recv YRDPOS 149864
17-03-17 19:23:35.308 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:23:35.308 -07 000000618 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:35.308 -07 000000618 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 19:23:35.308 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.123 mm/sec
17-03-17 19:23:36.258 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:36.258 -07 000000561 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:23:36.268 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:36.268 -07 000000618 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:36.288 -07 000000618 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:23:36.288 -07 000000618 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:23:36.288 -07 000000618 INF: Y Motor: Moved to 73.1763 after 1437 ms (table move)
17-03-17 19:23:36.288 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173559 mm (DAC = 37914)
17-03-17 19:23:36.288 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:36.288 -07 000000551 INF: FPGA: Recv ZSGSRD 36306
17-03-17 19:23:36.298 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:23:36.298 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:36.298 -07 000000433 INF: FPGA: Recv ZSGSRD 36308
17-03-17 19:23:36.308 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:23:36.308 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:36.308 -07 000000475 INF: FPGA: Recv ZSGSRD 36303
17-03-17 19:23:36.318 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:36.318 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:36.318 -07 000000480 INF: FPGA: Recv ZSGSRD 36305
17-03-17 19:23:36.328 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:36.328 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:36.328 -07 000000012 INF: FPGA: Recv ZSGSRD 36314
17-03-17 19:23:36.338 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:36.338 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:36.338 -07 000000561 INF: FPGA: Recv ZSGSRD 36316
17-03-17 19:23:36.348 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:36.348 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:36.348 -07 000000608 INF: FPGA: Recv ZSGSRD 36310
17-03-17 19:23:36.358 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:36.358 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:36.358 -07 000000012 INF: FPGA: Recv ZSGSRD 36309
17-03-17 19:23:36.368 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:36.368 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:36.368 -07 000000608 INF: FPGA: Recv ZSGSRD 36301
17-03-17 19:23:36.378 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:36.378 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:36.378 -07 000000012 INF: FPGA: Recv ZSGSRD 36300
17-03-17 19:23:36.388 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:36.388 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:36.388 -07 000000478 INF: FPGA: Recv ZPIEZORD 32537
17-03-17 19:23:36.398 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:36.398 -07 000000501 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.785 V. Piezo Error = -8.3 V.
17-03-17 19:23:36.398 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36307 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36307 (-172.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36300 (-172.6 uncal um), Max = 36316 (-172.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:23:36.398 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36307, posNoise = 9, negNoise = 7
17-03-17 19:23:36.398 -07 000000501 INF: Z Motor: After move to -0.173559, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:36.398 -07 000000501 INF: Z Motor: Settle wait time = 1440 ms, measure time = 106 ms (allowed 150 ms), total time = 1546 ms
17-03-17 19:23:36.398 -07 000000501 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:23:36.448 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 19:23:36.448 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:23:36.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:36.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:36.448 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:36.448 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:36.448 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:23:36.448 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:36.448 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:36.448 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:23:36.458 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:23:36.458 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:23:36.458 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:23:36.458 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:23:36.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:23:36.508 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:23:36.678 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:23:36.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:23:36.708 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:23:36.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:23:36.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:23:36.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2661347256, 0x0, 559484976) start.
17-03-17 19:23:36.748 -07 000000561 INF: FPGA: Recv @CAMSNAP 281
17-03-17 19:23:36.748 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 19:23:36.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 19:23:36.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2661347256, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 19:23:36.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:36.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:23:36.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:23:36.848 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:36.848 -07 000000561 INF: Autofocus start
17-03-17 19:23:36.848 -07 000000561 INF: MeasureProfile start
17-03-17 19:23:36.848 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:36.858 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:23:36.858 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:23:36.858 -07 000000561 INF: MeasureProfile done
17-03-17 19:23:36.858 -07 000000561 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:23:36.858 -07 000000561 INF: Autofocus finished
17-03-17 19:23:37.058 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:23:37.058 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:23:37.058 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.17356722224205. ----------
17-03-17 19:23:37.058 -07 000000610 INF: Cycle	25	Tile	17	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:23:37.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36447, sync = True, waitForSettling = True)
17-03-17 19:23:37.068 -07 000000610 INF: Z Motor: Moving to -0.166844 mm, started at -0.173567 mm, distance = 6.72 um
17-03-17 19:23:37.068 -07 000000610 INF: FPGA: Xmit ZDACW 36447\n [Z Motor]
17-03-17 19:23:37.068 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:23:37.078 -07 000000610 INF: FPGA: 'ZDACW 36447' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:23:37.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:37.078 -07 000000608 INF: FPGA: Recv ZDACR 36447
17-03-17 19:23:37.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:37.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:23:37.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:37.238 -07 000000501 INF: FPGA: Recv ZSGSRD 35262
17-03-17 19:23:37.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:37.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:37.248 -07 000000608 INF: FPGA: Recv ZSGSRD 35261
17-03-17 19:23:37.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:23:37.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:37.258 -07 000000431 INF: FPGA: Recv ZSGSRD 35269
17-03-17 19:23:37.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:37.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:37.268 -07 000000561 INF: FPGA: Recv ZSGSRD 35255
17-03-17 19:23:37.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:37.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:37.278 -07 000000431 INF: FPGA: Recv ZSGSRD 35265
17-03-17 19:23:37.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:37.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:37.288 -07 000000561 INF: FPGA: Recv ZSGSRD 35262
17-03-17 19:23:37.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:37.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:37.298 -07 000000501 INF: FPGA: Recv ZSGSRD 35258
17-03-17 19:23:37.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:37.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:37.308 -07 000000551 INF: FPGA: Recv ZSGSRD 35272
17-03-17 19:23:37.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:37.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:37.318 -07 000000431 INF: FPGA: Recv ZSGSRD 35261
17-03-17 19:23:37.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:37.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:37.328 -07 000000608 INF: FPGA: Recv ZSGSRD 35269
17-03-17 19:23:37.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:37.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:37.338 -07 000000012 INF: FPGA: Recv ZPIEZORD 31079
17-03-17 19:23:37.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:37.348 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.561 V. Piezo Error = -9.2 V.
17-03-17 19:23:37.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35263 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35262 (-166.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35255 (-165.9 uncal um), Max = 35272 (-166.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:23:37.348 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35263, posNoise = 9, negNoise = 8
17-03-17 19:23:37.348 -07 000000610 INF: Z Motor: After move to -0.166844, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:37.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:23:37.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:37.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:37.348 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:37.348 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:37.348 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:23:37.348 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:37.348 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:23:37.348 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:23:37.348 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:37.348 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:23:37.348 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:23:37.348 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:23:37.358 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:23:37.358 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:23:37.358 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:23:37.358 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:23:37.368 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:23:37.368 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:23:37.368 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:23:37.368 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:23:37.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 36623 150\n [Camera]
17-03-17 19:23:37.568 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:23:37.968 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:23:37.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:23:37.968 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:37.968 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:37.968 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:23:37.968 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:23:37.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:23:37.968 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:37.968 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:37.968 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:23:38.158 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36623 786
17-03-17 19:23:38.308 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:23:38.358 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:23:38.358 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:23:38.358 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:38.358 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:38.358 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:23:38.358 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:23:38.358 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:38.368 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:23:38.368 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:38.368 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:23:38.508 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:23:38.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:23:38.508 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:38.508 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:38.508 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:23:38.508 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:23:38.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:23:38.508 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:38.508 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:38.508 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:23:38.698 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-17 19:23:38.698 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:23:38.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 36623 150' command took 2 ms to send, 1323 ms to get response, and 1328 ms overall
17-03-17 19:23:38.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:23:38.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166860344766052. ------
17-03-17 19:23:38.698 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:38.698 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17333 mm
17-03-17 19:23:38.698 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:23:38.698 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:23:38.698 -07 000000012 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 19:23:38.708 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:38.708 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:38.708 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:23:38.708 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37864, sync = True, waitForSettling = False)
17-03-17 19:23:38.708 -07 000000501 INF: Z Motor: Moving to -0.173330 mm, started at -0.166860 mm, distance = -6.47 um
17-03-17 19:23:38.818 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:23:38.818 -07 000000478 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:23:38.818 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 112 ms overall
17-03-17 19:23:38.818 -07 000000012 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:38.818 -07 000000012 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:23:38.818 -07 000000012 INF: Y Motor: Moving 1354 steps-34
17-03-17 19:23:38.828 -07 000000501 INF: FPGA: Xmit ZDACW 37864\n [Z Motor]
17-03-17 19:23:38.828 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:23:38.838 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:23:38.838 -07 000000501 INF: FPGA: 'ZDACW 37864' command took 0 ms to send, 0 ms to get response, and 128 ms overall
17-03-17 19:23:38.848 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:38.848 -07 000000480 INF: FPGA: Recv ZDACR 37864
17-03-17 19:23:38.858 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:23:38.858 -07 000000501 INF: Z Motor: MoveAbsStepped took 149 ms (did NOT wait for settling yet))
17-03-17 19:23:38.908 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:23:38.908 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:23:38.908 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:38.908 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:23:38.908 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:23:38.908 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:38.908 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:38.918 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:23:38.918 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:23:38.918 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 19:23:39.008 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.015368,
17-03-17 19:23:39.018 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:23:39.018 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 313 ms overall
17-03-17 19:23:39.208 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:23:39.208 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 19:23:39.238 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:39.238 -07 000000501 INF: FPGA: Recv YRDPOS 151568
17-03-17 19:23:39.248 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:23:39.248 -07 000000012 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:39.248 -07 000000012 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:23:39.248 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.846 mm, average velocity = 2.143 mm/sec
17-03-17 19:23:40.198 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:40.198 -07 000000618 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:23:40.208 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:40.208 -07 000000012 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:40.218 -07 000000012 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:23:40.218 -07 000000012 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:23:40.218 -07 000000012 INF: Y Motor: Moved to 74.0083 after 1516 ms (table move)
17-03-17 19:23:40.218 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173330 mm (DAC = 37864)
17-03-17 19:23:40.218 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:40.228 -07 000000561 INF: FPGA: Recv ZSGSRD 36270
17-03-17 19:23:40.238 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:40.238 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:40.238 -07 000000623 INF: FPGA: Recv ZSGSRD 36262
17-03-17 19:23:40.248 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:40.248 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:40.248 -07 000000541 INF: FPGA: Recv ZSGSRD 36272
17-03-17 19:23:40.258 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:40.258 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:40.258 -07 000000561 INF: FPGA: Recv ZSGSRD 36276
17-03-17 19:23:40.268 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:40.278 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:40.278 -07 000000486 INF: FPGA: Recv ZSGSRD 36275
17-03-17 19:23:40.288 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:23:40.298 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:40.298 -07 000000476 INF: FPGA: Recv ZSGSRD 36272
17-03-17 19:23:40.308 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:23:40.308 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:40.308 -07 000000618 INF: FPGA: Recv ZSGSRD 36267
17-03-17 19:23:40.318 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:40.328 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:40.328 -07 000000478 INF: FPGA: Recv ZSGSRD 36278
17-03-17 19:23:40.338 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:23:40.338 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:40.338 -07 000000431 INF: FPGA: Recv ZSGSRD 36276
17-03-17 19:23:40.348 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:40.368 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:40.368 -07 000000478 INF: FPGA: Recv ZSGSRD 36274
17-03-17 19:23:40.378 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:23:40.378 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:40.378 -07 000000475 INF: FPGA: Recv ZPIEZORD 32499
17-03-17 19:23:40.388 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:40.388 -07 000000608 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.778 V. Piezo Error = -8.4 V.
17-03-17 19:23:40.388 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36272 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36273 (-172.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36262 (-172.4 uncal um), Max = 36278 (-172.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:23:40.388 -07 000000608 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36272, posNoise = 6, negNoise = 10
17-03-17 19:23:40.388 -07 000000608 INF: Z Motor: After move to -0.173330, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:40.388 -07 000000608 INF: Z Motor: Settle wait time = 1518 ms, measure time = 161 ms (allowed 150 ms), total time = 1679 ms
17-03-17 19:23:40.388 -07 000000608 INF: Z Motor: Warning: Actual position measuring time = 161 ms, longer than max expected time of 150 ms
17-03-17 19:23:40.388 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1683 ms
17-03-17 19:23:40.388 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:23:40.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:40.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:40.388 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:40.388 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:40.398 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:23:40.398 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:40.398 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:23:40.398 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:23:40.398 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:23:40.398 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:23:40.408 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:23:40.408 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:23:40.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:23:40.448 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:23:40.648 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:23:40.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:23:40.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:23:40.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:23:40.688 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:23:40.688 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 19:23:40.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 19:23:40.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:23:40.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:40.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:23:40.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:23:40.788 -07 000000608 INF: Autofocus start
17-03-17 19:23:40.788 -07 000000608 INF: MeasureProfile start
17-03-17 19:23:40.788 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:40.788 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:40.798 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:23:40.798 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:23:40.798 -07 000000608 INF: MeasureProfile done
17-03-17 19:23:40.798 -07 000000608 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:23:40.798 -07 000000608 INF: Autofocus finished
17-03-17 19:23:40.998 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:23:40.998 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:23:40.998 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.173342374817088. ----------
17-03-17 19:23:40.998 -07 000000610 INF: Cycle	25	Tile	18	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:23:41.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36361, sync = True, waitForSettling = True)
17-03-17 19:23:41.008 -07 000000610 INF: Z Motor: Moving to -0.166450 mm, started at -0.173342 mm, distance = 6.89 um
17-03-17 19:23:41.008 -07 000000610 INF: FPGA: Xmit ZDACW 36361\n [Z Motor]
17-03-17 19:23:41.008 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:23:41.018 -07 000000610 INF: FPGA: 'ZDACW 36361' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:41.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:41.018 -07 000000541 INF: FPGA: Recv ZDACR 36361
17-03-17 19:23:41.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:41.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:23:41.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:41.178 -07 000000623 INF: FPGA: Recv ZSGSRD 35200
17-03-17 19:23:41.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:41.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:41.188 -07 000000431 INF: FPGA: Recv ZSGSRD 35203
17-03-17 19:23:41.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:41.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:41.198 -07 000000012 INF: FPGA: Recv ZSGSRD 35194
17-03-17 19:23:41.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:41.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:41.208 -07 000000541 INF: FPGA: Recv ZSGSRD 35202
17-03-17 19:23:41.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:41.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:41.218 -07 000000623 INF: FPGA: Recv ZSGSRD 35205
17-03-17 19:23:41.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:41.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:41.228 -07 000000486 INF: FPGA: Recv ZSGSRD 35208
17-03-17 19:23:41.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:41.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:41.238 -07 000000618 INF: FPGA: Recv ZSGSRD 35197
17-03-17 19:23:41.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:41.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:41.258 -07 000000608 INF: FPGA: Recv ZSGSRD 35204
17-03-17 19:23:41.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:23:41.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:41.268 -07 000000476 INF: FPGA: Recv ZSGSRD 35203
17-03-17 19:23:41.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:41.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:41.278 -07 000000561 INF: FPGA: Recv ZSGSRD 35203
17-03-17 19:23:41.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:41.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:41.288 -07 000000541 INF: FPGA: Recv ZPIEZORD 31075
17-03-17 19:23:41.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:41.298 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.548 V. Piezo Error = -9.1 V.
17-03-17 19:23:41.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35202 (-165.6 uncal um), Error = 0.8 uncal um, Median = 35203 (-165.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35194 (-165.6 uncal um), Max = 35208 (-165.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:23:41.298 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35202, posNoise = 6, negNoise = 8
17-03-17 19:23:41.298 -07 000000610 INF: Z Motor: After move to -0.166450, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:41.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 19:23:41.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:41.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:41.298 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:41.298 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:41.298 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:23:41.298 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:41.298 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:23:41.298 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:23:41.298 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:23:41.298 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:23:41.298 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:23:41.298 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:23:41.308 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:23:41.308 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:23:41.308 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:23:41.308 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:23:41.308 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:23:41.308 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:23:41.308 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:23:41.308 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:23:41.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 36538 150\n [Camera]
17-03-17 19:23:41.518 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:23:41.678 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:23:41.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:23:41.918 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:23:41.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:23:41.918 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:41.918 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:23:41.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:23:41.918 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:41.918 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:41.928 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:23:41.928 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:41.928 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:23:42.108 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36538 786
17-03-17 19:23:42.258 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:23:42.318 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:23:42.318 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:23:42.318 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:42.318 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 19:23:42.318 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:23:42.318 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:42.318 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:42.318 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:23:42.328 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:42.328 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:23:42.458 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:23:42.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:23:42.458 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:42.458 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:23:42.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:23:42.458 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:42.458 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:42.458 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1059328048, 0x0, 391868352) start.
17-03-17 19:23:42.468 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:42.468 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1094750312, 0x0, 418435064) start.
17-03-17 19:23:42.648 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-17 19:23:42.648 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:23:42.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 36538 150' command took 2 ms to send, 1321 ms to get response, and 1329 ms overall
17-03-17 19:23:42.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:23:42.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.166468467825404. ------
17-03-17 19:23:42.768 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:42.768 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17286 mm
17-03-17 19:23:42.768 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:23:42.768 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:42.768 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 37760, sync = True, waitForSettling = False)
17-03-17 19:23:42.768 -07 000000476 INF: Z Motor: Moving to -0.172854 mm, started at -0.166468 mm, distance = -6.39 um
17-03-17 19:23:42.768 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:23:42.768 -07 000000012 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 19:23:42.778 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:23:42.778 -07 000000476 INF: FPGA: Xmit ZDACW 37760\n [Z Motor]
17-03-17 19:23:42.778 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:23:42.788 -07 000000476 INF: FPGA: 'ZDACW 37760' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:23:42.788 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:42.788 -07 000000431 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:23:42.798 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:23:42.798 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:23:42.798 -07 000000012 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:42.798 -07 000000012 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:23:42.798 -07 000000012 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:23:42.808 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:42.808 -07 000000480 INF: FPGA: Recv ZDACR 37760
17-03-17 19:23:42.818 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:23:42.818 -07 000000476 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 19:23:42.818 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:23:42.858 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1059328048, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:23:42.858 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:23:42.858 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:42.858 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1094750312, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 19:23:42.858 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:23:42.858 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:42.868 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:23:42.868 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 19:23:42.868 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:42.878 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 19:23:42.998 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:23:42.998 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:23:43.188 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 19:23:43.188 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:23:43.208 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:43.218 -07 000000541 INF: FPGA: Recv YRDPOS 153256
17-03-17 19:23:43.218 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:23:43.218 -07 000000012 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:43.218 -07 000000012 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 19:23:43.218 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-17 19:23:44.168 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:44.168 -07 000000476 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:23:44.178 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:44.178 -07 000000012 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:44.188 -07 000000012 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:23:44.188 -07 000000012 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:23:44.188 -07 000000012 INF: Y Motor: Moved to 74.8325 after 1419 ms (table move)
17-03-17 19:23:44.188 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172854 mm (DAC = 37760)
17-03-17 19:23:44.188 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:44.198 -07 000000012 INF: FPGA: Recv ZSGSRD 36194
17-03-17 19:23:44.198 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 19:23:44.198 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:44.198 -07 000000618 INF: FPGA: Recv ZSGSRD 36198
17-03-17 19:23:44.208 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:23:44.208 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:44.208 -07 000000431 INF: FPGA: Recv ZSGSRD 36191
17-03-17 19:23:44.218 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:44.218 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:44.218 -07 000000486 INF: FPGA: Recv ZSGSRD 36193
17-03-17 19:23:44.228 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:44.228 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:44.228 -07 000000431 INF: FPGA: Recv ZSGSRD 36195
17-03-17 19:23:44.238 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:44.238 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:44.238 -07 000000480 INF: FPGA: Recv ZSGSRD 36199
17-03-17 19:23:44.248 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:44.248 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:44.248 -07 000000486 INF: FPGA: Recv ZSGSRD 36199
17-03-17 19:23:44.258 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:44.258 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:44.258 -07 000000618 INF: FPGA: Recv ZSGSRD 36198
17-03-17 19:23:44.268 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:44.268 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:44.268 -07 000000476 INF: FPGA: Recv ZSGSRD 36203
17-03-17 19:23:44.278 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:44.278 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:44.278 -07 000000623 INF: FPGA: Recv ZSGSRD 36195
17-03-17 19:23:44.288 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:44.288 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:44.288 -07 000000012 INF: FPGA: Recv ZPIEZORD 32420
17-03-17 19:23:44.298 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:44.298 -07 000000561 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.762 V. Piezo Error = -8.4 V.
17-03-17 19:23:44.298 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36196 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36196 (-172.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36191 (-171.9 uncal um), Max = 36203 (-172.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:23:44.298 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36196, posNoise = 7, negNoise = 5
17-03-17 19:23:44.298 -07 000000561 INF: Z Motor: After move to -0.172854, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:44.298 -07 000000561 INF: Z Motor: Settle wait time = 1423 ms, measure time = 101 ms (allowed 150 ms), total time = 1524 ms
17-03-17 19:23:44.298 -07 000000561 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 19:23:44.348 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 19:23:44.348 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:23:44.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:44.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:44.348 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:44.348 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:44.348 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:23:44.348 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:44.348 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:44.348 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:23:44.358 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:23:44.358 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:23:44.358 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:23:44.358 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:23:44.368 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.012614,
17-03-17 19:23:44.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:23:44.428 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:23:44.628 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:23:44.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:23:44.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:23:44.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:23:44.668 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:23:44.668 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:23:44.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 302 ms overall
17-03-17 19:23:44.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:23:44.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:44.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:23:44.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:23:44.768 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:44.768 -07 000000623 INF: Autofocus start
17-03-17 19:23:44.768 -07 000000623 INF: MeasureProfile start
17-03-17 19:23:44.768 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:44.778 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:23:44.778 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:23:44.778 -07 000000623 INF: MeasureProfile done
17-03-17 19:23:44.778 -07 000000623 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:23:44.778 -07 000000623 INF: Autofocus finished
17-03-17 19:23:44.978 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:23:44.978 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:23:44.988 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.172854134694315. ----------
17-03-17 19:23:44.988 -07 000000610 INF: Cycle	25	Tile	19	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:23:44.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36257, sync = True, waitForSettling = True)
17-03-17 19:23:44.988 -07 000000610 INF: Z Motor: Moving to -0.165974 mm, started at -0.172854 mm, distance = 6.88 um
17-03-17 19:23:44.988 -07 000000610 INF: FPGA: Xmit ZDACW 36257\n [Z Motor]
17-03-17 19:23:44.988 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:23:44.998 -07 000000610 INF: FPGA: 'ZDACW 36257' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:23:44.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:44.998 -07 000000486 INF: FPGA: Recv ZDACR 36257
17-03-17 19:23:45.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:45.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:23:45.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:45.158 -07 000000431 INF: FPGA: Recv ZSGSRD 35125
17-03-17 19:23:45.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:45.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:45.168 -07 000000012 INF: FPGA: Recv ZSGSRD 35125
17-03-17 19:23:45.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:45.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:45.178 -07 000000431 INF: FPGA: Recv ZSGSRD 35128
17-03-17 19:23:45.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:45.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:45.188 -07 000000561 INF: FPGA: Recv ZSGSRD 35131
17-03-17 19:23:45.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:45.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:45.198 -07 000000476 INF: FPGA: Recv ZSGSRD 35129
17-03-17 19:23:45.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:45.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:45.208 -07 000000486 INF: FPGA: Recv ZSGSRD 35122
17-03-17 19:23:45.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:45.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:45.218 -07 000000561 INF: FPGA: Recv ZSGSRD 35129
17-03-17 19:23:45.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:45.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:45.228 -07 000000431 INF: FPGA: Recv ZSGSRD 35128
17-03-17 19:23:45.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:45.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:45.238 -07 000000480 INF: FPGA: Recv ZSGSRD 35124
17-03-17 19:23:45.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:45.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:45.248 -07 000000561 INF: FPGA: Recv ZSGSRD 35124
17-03-17 19:23:45.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:45.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:45.258 -07 000000486 INF: FPGA: Recv ZPIEZORD 30977
17-03-17 19:23:45.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:45.268 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.532 V. Piezo Error = -9.1 V.
17-03-17 19:23:45.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35126 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35126 (-165.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35122 (-165.1 uncal um), Max = 35131 (-165.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:23:45.268 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35126, posNoise = 5, negNoise = 4
17-03-17 19:23:45.268 -07 000000610 INF: Z Motor: After move to -0.165974, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:45.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:23:45.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:45.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:45.268 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:45.268 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:23:45.268 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:45.268 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:45.268 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:23:45.268 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:23:45.268 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:45.268 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:23:45.268 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:23:45.268 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:23:45.278 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:23:45.278 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:23:45.278 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:23:45.278 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:23:45.288 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:23:45.288 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:23:45.288 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:23:45.288 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:23:45.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 36434 150\n [Camera]
17-03-17 19:23:45.488 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:23:45.888 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:23:45.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:23:45.898 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:45.898 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:23:45.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:23:45.898 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:45.898 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:45.898 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:23:45.898 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:45.898 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:23:46.088 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36434 786
17-03-17 19:23:46.238 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:23:46.288 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:23:46.288 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:23:46.288 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:46.288 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:46.288 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:23:46.288 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:23:46.288 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:46.298 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:46.298 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:23:46.298 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:23:46.428 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:23:46.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:23:46.428 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:46.428 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:23:46.428 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:46.428 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:23:46.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:23:46.428 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:46.428 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:46.438 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1147047640, 0x0, 418435064) start.
17-03-17 19:23:46.618 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-17 19:23:46.618 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:23:46.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 36434 150' command took 2 ms to send, 1317 ms to get response, and 1329 ms overall
17-03-17 19:23:46.678 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:23:46.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:23:46.838 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 19:23:46.838 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:23:46.838 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:46.838 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1147047640, 0x0, 418435064) end. Duration was 406 ms.
17-03-17 19:23:46.838 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 19:23:46.838 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:46.848 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:46.848 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 19:23:46.848 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:23:46.848 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:46.848 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 19:23:46.888 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 19:23:46.888 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:23:46.928 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 19:23:46.928 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 19:23:46.928 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:23:46.938 -07 000000618 INF: FPGA: Recv EMCUR 
17-03-17 19:23:46.938 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:23:46.938 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 19:23:47.438 -07 000000561 INF: FPGA: Recv EMIN
17-03-17 19:23:47.438 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 19:23:47.438 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 19:23:47.438 -07 000000476 INF: FPGA: Recv EMCUR 
17-03-17 19:23:47.448 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:23:47.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:23:47.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.16598022770263. ------
17-03-17 19:23:47.448 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:47.448 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14050 mm
17-03-17 19:23:47.448 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:23:47.448 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30693, sync = True, waitForSettling = False)
17-03-17 19:23:47.448 -07 000000623 INF: Z Motor: Moving to -0.140504 mm, started at -0.165980 mm, distance = 25.48 um
17-03-17 19:23:47.458 -07 000000623 INF: FPGA: Xmit ZDACW 30693\n [Z Motor]
17-03-17 19:23:47.458 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:47.458 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:23:47.458 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:23:47.458 -07 000000480 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 19:23:47.458 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:23:47.468 -07 000000623 INF: FPGA: 'ZDACW 30693' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:47.468 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:47.468 -07 000000541 INF: FPGA: Recv ZDACR 30693
17-03-17 19:23:47.478 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:23:47.478 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:47.478 -07 000000623 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 19:23:47.488 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:47.488 -07 000000476 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:23:47.498 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 19:23:47.498 -07 000000480 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:47.498 -07 000000480 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 19:23:47.498 -07 000000480 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:23:47.498 -07 000000480 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:23:47.678 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:23:47.678 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:23:49.128 -07 000000623 INF: FPGA: Recv YMVTO 122702 23904
17-03-17 19:23:49.128 -07 000000480 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1621 ms to get response, and 1628 ms overall
17-03-17 19:23:49.128 -07 000000480 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 19:23:49.128 -07 000000480 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 19:23:49.128 -07 000000480 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1628 ms, distance = 14.920 mm, average velocity = 9.165 mm/sec
17-03-17 19:23:49.738 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.024884,
17-03-17 19:23:51.678 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:23:51.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:23:51.978 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:51.978 -07 000000618 INF: FPGA: Recv YRDPOS 122697
17-03-17 19:23:51.988 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:51.988 -07 000000480 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:52.008 -07 000000480 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:23:52.008 -07 000000480 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 19:23:52.008 -07 000000480 INF: Y Motor: Moved to 59.9106 after 4558 ms
17-03-17 19:23:52.018 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140504 mm (DAC = 30693)
17-03-17 19:23:52.018 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:52.018 -07 000000476 INF: FPGA: Recv ZSGSRD 31163
17-03-17 19:23:52.028 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:23:52.028 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:52.028 -07 000000561 INF: FPGA: Recv ZSGSRD 31155
17-03-17 19:23:52.038 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:52.038 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:52.038 -07 000000618 INF: FPGA: Recv ZSGSRD 31163
17-03-17 19:23:52.048 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:52.048 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:52.048 -07 000000486 INF: FPGA: Recv ZSGSRD 31165
17-03-17 19:23:52.058 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:52.058 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:52.058 -07 000000480 INF: FPGA: Recv ZSGSRD 31151
17-03-17 19:23:52.068 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:52.068 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:52.068 -07 000000541 INF: FPGA: Recv ZSGSRD 31162
17-03-17 19:23:52.078 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:52.078 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:52.078 -07 000000623 INF: FPGA: Recv ZSGSRD 31156
17-03-17 19:23:52.088 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:52.088 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:52.088 -07 000000561 INF: FPGA: Recv ZSGSRD 31163
17-03-17 19:23:52.098 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:52.098 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:52.098 -07 000000431 INF: FPGA: Recv ZSGSRD 31165
17-03-17 19:23:52.108 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:52.108 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:52.108 -07 000000541 INF: FPGA: Recv ZSGSRD 31155
17-03-17 19:23:52.118 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:52.118 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:52.118 -07 000000623 INF: FPGA: Recv ZPIEZORD 26814
17-03-17 19:23:52.128 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:52.128 -07 000000012 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.683 V. Piezo Error = -9.6 V.
17-03-17 19:23:52.128 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.5 um, Read 10 ADC samples: Avg = 31160 (-139.7 uncal um), Error = 0.8 uncal um, Median = 31162 (-139.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31151 (-139.6 uncal um), Max = 31165 (-139.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:23:52.128 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31160, posNoise = 5, negNoise = 9
17-03-17 19:23:52.128 -07 000000012 INF: Z Motor: After move to -0.140504, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:52.128 -07 000000012 INF: Z Motor: Settle wait time = 4562 ms, measure time = 110 ms (allowed 150 ms), total time = 4672 ms
17-03-17 19:23:52.128 -07 000000012 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 19:23:52.168 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4713 ms
17-03-17 19:23:52.168 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:23:52.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:52.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:52.168 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:52.168 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:23:52.168 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:52.168 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:52.168 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:52.168 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:23:52.188 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 19:23:52.188 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:23:52.188 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:23:52.188 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:23:52.198 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:23:52.198 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-17 19:23:52.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:23:52.248 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:23:52.448 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:23:52.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:23:52.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:23:52.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 19:23:52.488 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:23:52.488 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:23:52.488 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 19:23:52.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:23:52.568 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:52.568 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:23:52.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:23:52.588 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:52.588 -07 000000476 INF: Image SNR check: start
17-03-17 19:23:52.588 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:52.598 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:23:52.598 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:23:52.598 -07 000000476 INF: Image SNR check: pass  [peak (Max-Min)=65.30]
17-03-17 19:23:52.598 -07 000000476 INF: Autofocus start
17-03-17 19:23:52.598 -07 000000476 INF: MeasureProfile start
17-03-17 19:23:52.618 -07 000000476 INF: MeasureProfile done
17-03-17 19:23:52.618 -07 000000476 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:23:52.618 -07 000000476 INF: Autofocus finished
17-03-17 19:23:52.798 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:23:52.798 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 19:23:52.808 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.140501802348406. ----------
17-03-17 19:23:52.808 -07 000000610 INF: Cycle	25	Tile	1	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:23:52.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29201, sync = True, waitForSettling = True)
17-03-17 19:23:52.808 -07 000000610 INF: Z Motor: Moving to -0.133674 mm, started at -0.140502 mm, distance = 6.83 um
17-03-17 19:23:52.808 -07 000000610 INF: FPGA: Xmit ZDACW 29201\n [Z Motor]
17-03-17 19:23:52.818 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:23:52.818 -07 000000610 INF: FPGA: 'ZDACW 29201' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:23:52.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:52.818 -07 000000480 INF: FPGA: Recv ZDACR 29201
17-03-17 19:23:52.828 -07 000000610 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:23:52.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:23:52.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:52.978 -07 000000561 INF: FPGA: Recv ZSGSRD 30094
17-03-17 19:23:52.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:52.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:52.988 -07 000000561 INF: FPGA: Recv ZSGSRD 30098
17-03-17 19:23:52.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:52.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:52.998 -07 000000626 INF: FPGA: Recv ZSGSRD 30098
17-03-17 19:23:53.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:53.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:53.008 -07 000000476 INF: FPGA: Recv ZSGSRD 30091
17-03-17 19:23:53.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:53.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:53.018 -07 000000626 INF: FPGA: Recv ZSGSRD 30101
17-03-17 19:23:53.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:53.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:53.028 -07 000000476 INF: FPGA: Recv ZSGSRD 30100
17-03-17 19:23:53.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:53.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:53.038 -07 000000480 INF: FPGA: Recv ZSGSRD 30102
17-03-17 19:23:53.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:53.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:53.048 -07 000000476 INF: FPGA: Recv ZSGSRD 30096
17-03-17 19:23:53.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:53.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:53.058 -07 000000480 INF: FPGA: Recv ZSGSRD 30091
17-03-17 19:23:53.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:53.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:53.068 -07 000000476 INF: FPGA: Recv ZSGSRD 30102
17-03-17 19:23:53.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:53.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:53.078 -07 000000480 INF: FPGA: Recv ZPIEZORD 25656
17-03-17 19:23:53.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:53.088 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.456 V. Piezo Error = -9.7 V.
17-03-17 19:23:53.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30097 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30098 (-132.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30091 (-132.8 uncal um), Max = 30102 (-132.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:23:53.088 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30097, posNoise = 5, negNoise = 6
17-03-17 19:23:53.088 -07 000000610 INF: Z Motor: After move to -0.133674, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:53.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 19:23:53.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:53.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:53.088 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:53.088 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:53.088 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:23:53.088 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:53.088 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:23:53.088 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:23:53.088 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:23:53.088 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:23:53.088 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:23:53.088 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:23:53.098 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:23:53.098 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:23:53.108 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:23:53.108 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:23:53.108 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 19:23:53.108 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:23:53.118 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:23:53.118 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:23:53.128 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:23:53.128 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 36 ms.
17-03-17 19:23:53.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 29377 150\n [Camera]
17-03-17 19:23:53.328 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:23:53.728 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:23:53.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:23:53.728 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:53.728 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:53.728 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:23:53.728 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:23:53.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:23:53.728 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:53.728 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:53.728 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:23:53.918 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29377 786
17-03-17 19:23:54.068 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:23:54.118 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 19:23:54.118 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:23:54.118 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:54.118 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:23:54.118 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:23:54.118 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:54.128 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:54.128 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:54.128 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:23:54.128 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:23:54.258 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:23:54.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:23:54.268 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:54.268 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:54.268 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:23:54.268 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:23:54.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:23:54.268 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:54.268 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:54.268 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:23:54.458 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:23:54.458 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:23:54.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 29377 150' command took 2 ms to send, 1323 ms to get response, and 1330 ms overall
17-03-17 19:23:54.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:23:54.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.133672864841715. ------
17-03-17 19:23:54.458 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:54.458 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14013 mm
17-03-17 19:23:54.458 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:23:54.468 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:54.468 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:23:54.468 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:23:54.468 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:23:54.468 -07 000000561 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 19:23:54.468 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30612, sync = True, waitForSettling = False)
17-03-17 19:23:54.468 -07 000000012 INF: Z Motor: Moving to -0.140133 mm, started at -0.133673 mm, distance = -6.46 um
17-03-17 19:23:54.478 -07 000000012 INF: FPGA: Xmit ZDACW 30612\n [Z Motor]
17-03-17 19:23:54.478 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:23:54.488 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:54.488 -07 000000012 INF: FPGA: 'ZDACW 30612' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:23:54.488 -07 000000431 INF: FPGA: Recv YRDPOS 122697
17-03-17 19:23:54.498 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:23:54.498 -07 000000561 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:54.498 -07 000000561 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:23:54.498 -07 000000561 INF: Y Motor: Moving 1331 steps1
17-03-17 19:23:54.618 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:54.618 -07 000000431 INF: FPGA: Recv ZDACR 30612
17-03-17 19:23:54.628 -07 000000012 INF: FPGA: 'ZDACR' command took 120 ms to send, 0 ms to get response, and 139 ms overall
17-03-17 19:23:54.628 -07 000000012 INF: Z Motor: MoveAbsStepped took 157 ms (did NOT wait for settling yet))
17-03-17 19:23:54.628 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:23:54.668 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:23:54.668 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:23:54.668 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 19:23:54.668 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:23:54.668 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:54.668 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 19:23:54.668 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:23:54.668 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:54.678 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:54.678 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:23:54.678 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 19:23:54.688 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:23:54.998 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 19:23:54.998 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 19:23:55.028 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:55.038 -07 000000431 INF: FPGA: Recv YRDPOS 124381
17-03-17 19:23:55.038 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:23:55.038 -07 000000561 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:55.038 -07 000000561 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 19:23:55.038 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 508 ms, distance = 0.832 mm, average velocity = 1.638 mm/sec
17-03-17 19:23:55.098 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.043918,
17-03-17 19:23:55.988 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:55.988 -07 000000623 INF: FPGA: Recv YRDPOS 124381
17-03-17 19:23:55.998 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:55.998 -07 000000561 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:56.018 -07 000000561 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:23:56.018 -07 000000561 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:23:56.018 -07 000000561 INF: Y Motor: Moved to 60.7329 after 1549 ms (table move)
17-03-17 19:23:56.018 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140133 mm (DAC = 30612)
17-03-17 19:23:56.018 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:56.018 -07 000000561 INF: FPGA: Recv ZSGSRD 31103
17-03-17 19:23:56.028 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:23:56.028 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:56.028 -07 000000541 INF: FPGA: Recv ZSGSRD 31106
17-03-17 19:23:56.038 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:56.038 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:56.038 -07 000000541 INF: FPGA: Recv ZSGSRD 31107
17-03-17 19:23:56.048 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:56.048 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:56.048 -07 000000541 INF: FPGA: Recv ZSGSRD 31109
17-03-17 19:23:56.058 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:56.058 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:56.058 -07 000000541 INF: FPGA: Recv ZSGSRD 31109
17-03-17 19:23:56.068 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:56.068 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:56.068 -07 000000561 INF: FPGA: Recv ZSGSRD 31104
17-03-17 19:23:56.078 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:56.078 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:56.078 -07 000000561 INF: FPGA: Recv ZSGSRD 31105
17-03-17 19:23:56.088 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:56.098 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:56.098 -07 000000480 INF: FPGA: Recv ZSGSRD 31106
17-03-17 19:23:56.108 -07 000000476 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:23:56.108 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:56.108 -07 000000480 INF: FPGA: Recv ZSGSRD 31093
17-03-17 19:23:56.118 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:56.118 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:56.118 -07 000000480 INF: FPGA: Recv ZSGSRD 31105
17-03-17 19:23:56.128 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:56.128 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:56.128 -07 000000480 INF: FPGA: Recv ZPIEZORD 27008
17-03-17 19:23:56.138 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:56.138 -07 000000476 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.671 V. Piezo Error = -9.0 V.
17-03-17 19:23:56.138 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.1 um, Read 10 ADC samples: Avg = 31105 (-139.3 uncal um), Error = 0.8 uncal um, Median = 31106 (-139.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31093 (-139.3 uncal um), Max = 31109 (-139.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 19:23:56.138 -07 000000476 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31105, posNoise = 4, negNoise = 12
17-03-17 19:23:56.138 -07 000000476 INF: Z Motor: After move to -0.140133, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:56.138 -07 000000476 INF: Z Motor: Settle wait time = 1552 ms, measure time = 115 ms (allowed 150 ms), total time = 1667 ms
17-03-17 19:23:56.138 -07 000000476 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-17 19:23:56.178 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1711 ms
17-03-17 19:23:56.178 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:23:56.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:56.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:56.178 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:56.178 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:56.178 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:23:56.178 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:56.178 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:56.178 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:23:56.188 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:23:56.188 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:23:56.198 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:23:56.198 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:23:56.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:23:56.248 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:23:56.448 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:23:56.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:23:56.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:23:56.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:23:56.488 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:23:56.488 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 19:23:56.488 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 19:23:56.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:23:56.568 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:56.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:23:56.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:23:56.588 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:56.588 -07 000000541 INF: Autofocus start
17-03-17 19:23:56.588 -07 000000541 INF: MeasureProfile start
17-03-17 19:23:56.588 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:56.598 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:23:56.598 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:23:56.598 -07 000000541 INF: MeasureProfile done
17-03-17 19:23:56.598 -07 000000541 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:23:56.598 -07 000000541 INF: Autofocus finished
17-03-17 19:23:56.678 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:23:56.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:23:56.798 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:23:56.798 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:23:56.798 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.14014847068061. ----------
17-03-17 19:23:56.798 -07 000000610 INF: Cycle	25	Tile	2	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:23:56.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29119, sync = True, waitForSettling = True)
17-03-17 19:23:56.808 -07 000000610 INF: Z Motor: Moving to -0.133298 mm, started at -0.140148 mm, distance = 6.85 um
17-03-17 19:23:56.808 -07 000000610 INF: FPGA: Xmit ZDACW 29119\n [Z Motor]
17-03-17 19:23:56.808 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:23:56.818 -07 000000610 INF: FPGA: 'ZDACW 29119' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:56.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:56.818 -07 000000486 INF: FPGA: Recv ZDACR 29119
17-03-17 19:23:56.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:56.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:23:56.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:56.978 -07 000000623 INF: FPGA: Recv ZSGSRD 30046
17-03-17 19:23:56.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:23:56.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:56.988 -07 000000623 INF: FPGA: Recv ZSGSRD 30039
17-03-17 19:23:56.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:56.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:56.998 -07 000000475 INF: FPGA: Recv ZSGSRD 30041
17-03-17 19:23:57.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:57.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:57.008 -07 000000541 INF: FPGA: Recv ZSGSRD 30035
17-03-17 19:23:57.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:57.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:57.018 -07 000000541 INF: FPGA: Recv ZSGSRD 30039
17-03-17 19:23:57.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:57.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:57.028 -07 000000475 INF: FPGA: Recv ZSGSRD 30042
17-03-17 19:23:57.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:57.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:57.038 -07 000000475 INF: FPGA: Recv ZSGSRD 30035
17-03-17 19:23:57.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:57.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:57.048 -07 000000475 INF: FPGA: Recv ZSGSRD 30039
17-03-17 19:23:57.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:57.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:57.058 -07 000000475 INF: FPGA: Recv ZSGSRD 30045
17-03-17 19:23:57.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:57.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:23:57.068 -07 000000475 INF: FPGA: Recv ZSGSRD 30045
17-03-17 19:23:57.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:57.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:23:57.078 -07 000000480 INF: FPGA: Recv ZPIEZORD 25645
17-03-17 19:23:57.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:57.088 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.443 V. Piezo Error = -9.6 V.
17-03-17 19:23:57.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30041 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30040 (-132.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30035 (-132.5 uncal um), Max = 30046 (-132.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:23:57.088 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30041, posNoise = 5, negNoise = 6
17-03-17 19:23:57.088 -07 000000610 INF: Z Motor: After move to -0.133298, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:23:57.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:23:57.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:23:57.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:23:57.088 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:23:57.088 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:23:57.088 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:23:57.088 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:23:57.088 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:23:57.088 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:23:57.088 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:23:57.088 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:23:57.088 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:23:57.088 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:23:57.098 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:23:57.098 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:23:57.098 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:23:57.098 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:23:57.108 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:23:57.108 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:23:57.108 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:23:57.108 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:23:57.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 29296 150\n [Camera]
17-03-17 19:23:57.318 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:23:57.718 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:23:57.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:23:57.718 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:57.718 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:23:57.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:23:57.718 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:57.718 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:57.718 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:23:57.728 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:57.728 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:23:57.908 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29296 789
17-03-17 19:23:58.058 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:23:58.118 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:23:58.118 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:23:58.118 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:58.118 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:58.118 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:23:58.118 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:23:58.118 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:23:58.118 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:58.128 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:58.128 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:23:58.248 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:23:58.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:23:58.248 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:23:58.258 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:23:58.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:23:58.258 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:23:58.258 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:23:58.258 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:23:58.268 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:23:58.268 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:23:58.438 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:23:58.438 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:23:58.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 29296 150' command took 2 ms to send, 1319 ms to get response, and 1329 ms overall
17-03-17 19:23:58.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:23:58.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.133313108961776. ------
17-03-17 19:23:58.448 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:23:58.448 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13998 mm
17-03-17 19:23:58.448 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:23:58.448 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:23:58.448 -07 000000626 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 19:23:58.448 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:23:58.448 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 30579, sync = True, waitForSettling = False)
17-03-17 19:23:58.448 -07 000000433 INF: Z Motor: Moving to -0.139982 mm, started at -0.133313 mm, distance = -6.67 um
17-03-17 19:23:58.458 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:23:58.458 -07 000000433 INF: FPGA: Xmit ZDACW 30579\n [Z Motor]
17-03-17 19:23:58.458 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:23:58.468 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:58.588 -07 000000433 INF: FPGA: 'ZDACW 30579' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:23:58.588 -07 000000623 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:23:58.598 -07 000000626 INF: FPGA: 'YRDPOS' command took 120 ms to send, 0 ms to get response, and 142 ms overall
17-03-17 19:23:58.598 -07 000000626 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:58.598 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:23:58.598 -07 000000626 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:23:58.598 -07 000000626 INF: Y Motor: Moving 1343 steps-20
17-03-17 19:23:58.608 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:23:58.608 -07 000000431 INF: FPGA: Recv ZDACR 30579
17-03-17 19:23:58.618 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:23:58.618 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:23:58.618 -07 000000433 INF: Z Motor: MoveAbsStepped took 162 ms (did NOT wait for settling yet))
17-03-17 19:23:58.658 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:23:58.658 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:23:58.658 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:58.658 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 19:23:58.658 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:23:58.658 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:23:58.658 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:23:58.658 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 19:23:58.658 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:23:58.668 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:23:58.798 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:23:58.798 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 342 ms overall
17-03-17 19:23:58.988 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 19:23:58.988 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 19:23:59.028 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:59.028 -07 000000012 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:23:59.038 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:23:59.038 -07 000000626 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:23:59.038 -07 000000626 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:23:59.038 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.137 mm/sec
17-03-17 19:23:59.988 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:23:59.988 -07 000000561 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:23:59.998 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:23:59.998 -07 000000626 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:00.018 -07 000000626 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:24:00.018 -07 000000626 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:24:00.018 -07 000000626 INF: Y Motor: Moved to 61.5640 after 1565 ms (table move)
17-03-17 19:24:00.018 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139982 mm (DAC = 30579)
17-03-17 19:24:00.018 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:00.018 -07 000000626 INF: FPGA: Recv ZSGSRD 31079
17-03-17 19:24:00.028 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:24:00.028 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:00.028 -07 000000480 INF: FPGA: Recv ZSGSRD 31077
17-03-17 19:24:00.038 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:00.038 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:00.038 -07 000000626 INF: FPGA: Recv ZSGSRD 31074
17-03-17 19:24:00.048 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:00.048 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:00.048 -07 000000480 INF: FPGA: Recv ZSGSRD 31088
17-03-17 19:24:00.058 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:00.058 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:00.058 -07 000000626 INF: FPGA: Recv ZSGSRD 31089
17-03-17 19:24:00.068 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:00.068 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:00.068 -07 000000480 INF: FPGA: Recv ZSGSRD 31082
17-03-17 19:24:00.078 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:00.078 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:00.078 -07 000000626 INF: FPGA: Recv ZSGSRD 31074
17-03-17 19:24:00.088 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:00.088 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:00.088 -07 000000480 INF: FPGA: Recv ZSGSRD 31071
17-03-17 19:24:00.098 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:00.098 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:00.098 -07 000000480 INF: FPGA: Recv ZSGSRD 31080
17-03-17 19:24:00.108 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:00.108 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:00.108 -07 000000480 INF: FPGA: Recv ZSGSRD 31082
17-03-17 19:24:00.118 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:00.118 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:00.118 -07 000000476 INF: FPGA: Recv ZPIEZORD 27059
17-03-17 19:24:00.128 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:00.128 -07 000000475 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.666 V. Piezo Error = -8.9 V.
17-03-17 19:24:00.128 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31080 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31080 (-139.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 31071 (-139.1 uncal um), Max = 31089 (-139.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:24:00.128 -07 000000475 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31080, posNoise = 9, negNoise = 9
17-03-17 19:24:00.128 -07 000000475 INF: Z Motor: After move to -0.139982, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:00.128 -07 000000475 INF: Z Motor: Settle wait time = 1567 ms, measure time = 105 ms (allowed 150 ms), total time = 1672 ms
17-03-17 19:24:00.128 -07 000000475 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:24:00.178 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1725 ms
17-03-17 19:24:00.178 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:24:00.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:00.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:00.178 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:00.178 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:00.178 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:24:00.178 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:00.188 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:24:00.188 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:24:00.188 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:24:00.188 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:24:00.188 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:24:00.198 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:24:00.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:24:00.238 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:24:00.438 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:24:00.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:24:00.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:24:00.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:24:00.458 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.999021,
17-03-17 19:24:00.478 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:24:00.478 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:24:00.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:24:00.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:24:00.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:00.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:24:00.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:24:00.578 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:00.578 -07 000000433 INF: Autofocus start
17-03-17 19:24:00.578 -07 000000433 INF: MeasureProfile start
17-03-17 19:24:00.578 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:00.588 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:24:00.588 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:24:00.588 -07 000000433 INF: MeasureProfile done
17-03-17 19:24:00.588 -07 000000433 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:24:00.588 -07 000000433 INF: Autofocus finished
17-03-17 19:24:00.788 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:24:00.788 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:24:00.788 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139987865377066. ----------
17-03-17 19:24:00.788 -07 000000610 INF: Cycle	25	Tile	3	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:24:00.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29087, sync = True, waitForSettling = True)
17-03-17 19:24:00.798 -07 000000610 INF: Z Motor: Moving to -0.133152 mm, started at -0.139988 mm, distance = 6.84 um
17-03-17 19:24:00.798 -07 000000610 INF: FPGA: Xmit ZDACW 29087\n [Z Motor]
17-03-17 19:24:00.798 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:24:00.808 -07 000000610 INF: FPGA: 'ZDACW 29087' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:00.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:00.808 -07 000000475 INF: FPGA: Recv ZDACR 29087
17-03-17 19:24:00.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:00.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:24:00.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:00.968 -07 000000475 INF: FPGA: Recv ZSGSRD 30016
17-03-17 19:24:00.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:00.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:00.978 -07 000000475 INF: FPGA: Recv ZSGSRD 30018
17-03-17 19:24:00.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:00.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:00.988 -07 000000475 INF: FPGA: Recv ZSGSRD 30021
17-03-17 19:24:00.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:00.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:00.998 -07 000000475 INF: FPGA: Recv ZSGSRD 30013
17-03-17 19:24:01.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:01.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:01.008 -07 000000475 INF: FPGA: Recv ZSGSRD 30019
17-03-17 19:24:01.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:01.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:01.018 -07 000000475 INF: FPGA: Recv ZSGSRD 30025
17-03-17 19:24:01.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:01.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:01.028 -07 000000433 INF: FPGA: Recv ZSGSRD 30017
17-03-17 19:24:01.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:01.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:01.038 -07 000000431 INF: FPGA: Recv ZSGSRD 30017
17-03-17 19:24:01.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:01.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:01.048 -07 000000431 INF: FPGA: Recv ZSGSRD 30014
17-03-17 19:24:01.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:01.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:01.058 -07 000000431 INF: FPGA: Recv ZSGSRD 30014
17-03-17 19:24:01.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:01.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:01.068 -07 000000012 INF: FPGA: Recv ZPIEZORD 25668
17-03-17 19:24:01.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:01.078 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.438 V. Piezo Error = -9.6 V.
17-03-17 19:24:01.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30017 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30017 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30013 (-132.3 uncal um), Max = 30025 (-132.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:24:01.078 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30017, posNoise = 8, negNoise = 4
17-03-17 19:24:01.078 -07 000000610 INF: Z Motor: After move to -0.133152, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:01.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:24:01.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:01.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:01.078 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:01.078 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:24:01.078 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:01.078 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:01.078 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:24:01.078 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:24:01.078 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:01.078 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:24:01.078 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:24:01.078 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:24:01.088 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:24:01.088 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:24:01.088 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:24:01.088 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:24:01.088 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:24:01.088 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:24:01.098 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:24:01.098 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:24:01.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 29263 150\n [Camera]
17-03-17 19:24:01.298 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:24:01.678 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:24:01.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:24:01.698 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:24:01.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:24:01.698 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:01.698 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:24:01.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:24:01.698 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:01.698 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:01.698 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:24:01.708 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:01.708 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:24:01.888 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29263 786
17-03-17 19:24:02.038 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:24:02.098 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:24:02.098 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:24:02.098 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:02.098 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:24:02.098 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:24:02.098 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:02.098 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:02.098 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:24:02.108 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:02.108 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:24:02.228 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:24:02.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:24:02.238 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:02.238 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:02.238 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:24:02.238 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:24:02.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:24:02.238 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:02.238 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:02.238 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:24:02.428 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-17 19:24:02.428 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:24:02.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 29263 150' command took 2 ms to send, 1321 ms to get response, and 1329 ms overall
17-03-17 19:24:02.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:24:02.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.133158927870374. ------
17-03-17 19:24:02.428 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:02.428 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13954 mm
17-03-17 19:24:02.428 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:24:02.438 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:02.438 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30483, sync = True, waitForSettling = False)
17-03-17 19:24:02.438 -07 000000626 INF: Z Motor: Moving to -0.139542 mm, started at -0.133159 mm, distance = -6.38 um
17-03-17 19:24:02.438 -07 000000626 INF: FPGA: Xmit ZDACW 30483\n [Z Motor]
17-03-17 19:24:02.438 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:24:02.438 -07 000000475 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 19:24:02.438 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:24:02.438 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:24:02.448 -07 000000626 INF: FPGA: 'ZDACW 30483' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:24:02.448 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:24:02.458 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:02.458 -07 000000480 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:24:02.468 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:24:02.468 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:02.468 -07 000000475 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:02.468 -07 000000475 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:24:02.468 -07 000000475 INF: Y Motor: Moving 1342 steps-18
17-03-17 19:24:02.468 -07 000000433 INF: FPGA: Recv ZDACR 30483
17-03-17 19:24:02.478 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:24:02.478 -07 000000626 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:24:02.478 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:24:02.628 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 19:24:02.628 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:24:02.628 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:02.628 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:24:02.628 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:24:02.628 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:02.638 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:24:02.638 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:24:02.638 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:24:02.638 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 19:24:02.648 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:24:02.648 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 19:24:02.848 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 19:24:02.848 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:24:02.888 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:02.888 -07 000000012 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:24:02.898 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:24:02.898 -07 000000475 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:02.898 -07 000000475 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:24:02.898 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-17 19:24:03.848 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:03.848 -07 000000480 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:24:03.858 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:03.858 -07 000000475 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:03.868 -07 000000475 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:24:03.868 -07 000000475 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:24:03.878 -07 000000475 INF: Y Motor: Moved to 62.3955 after 1436 ms (table move)
17-03-17 19:24:03.878 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139542 mm (DAC = 30483)
17-03-17 19:24:03.878 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:03.878 -07 000000541 INF: FPGA: Recv ZSGSRD 31022
17-03-17 19:24:03.888 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:24:03.888 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:03.888 -07 000000541 INF: FPGA: Recv ZSGSRD 31015
17-03-17 19:24:03.898 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:03.898 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:03.898 -07 000000475 INF: FPGA: Recv ZSGSRD 31016
17-03-17 19:24:03.908 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:03.908 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:03.908 -07 000000541 INF: FPGA: Recv ZSGSRD 31016
17-03-17 19:24:03.918 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:03.918 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:03.918 -07 000000012 INF: FPGA: Recv ZSGSRD 31021
17-03-17 19:24:03.928 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:03.928 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:03.928 -07 000000012 INF: FPGA: Recv ZSGSRD 31010
17-03-17 19:24:03.938 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:03.938 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:03.938 -07 000000475 INF: FPGA: Recv ZSGSRD 31014
17-03-17 19:24:03.948 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:03.948 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:03.948 -07 000000475 INF: FPGA: Recv ZSGSRD 31006
17-03-17 19:24:03.958 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:03.958 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:03.958 -07 000000012 INF: FPGA: Recv ZSGSRD 31007
17-03-17 19:24:03.968 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:03.968 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:03.968 -07 000000475 INF: FPGA: Recv ZSGSRD 31018
17-03-17 19:24:03.978 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:03.978 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:03.978 -07 000000486 INF: FPGA: Recv ZPIEZORD 26974
17-03-17 19:24:03.988 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:24:03.988 -07 000000561 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.651 V. Piezo Error = -8.9 V.
17-03-17 19:24:03.988 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31014 (-138.8 uncal um), Error = 0.8 uncal um, Median = 31016 (-138.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31006 (-138.7 uncal um), Max = 31022 (-138.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:24:03.988 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31014, posNoise = 8, negNoise = 8
17-03-17 19:24:03.988 -07 000000561 INF: Z Motor: After move to -0.139542, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:03.988 -07 000000561 INF: Z Motor: Settle wait time = 1440 ms, measure time = 110 ms (allowed 150 ms), total time = 1550 ms
17-03-17 19:24:03.988 -07 000000561 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 19:24:04.028 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 19:24:04.028 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:24:04.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:04.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:04.038 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:04.038 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:24:04.038 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:04.038 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:04.038 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:24:04.038 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:24:04.038 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:24:04.038 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:24:04.048 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:24:04.048 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:24:04.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:24:04.098 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:24:04.298 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:24:04.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:24:04.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:24:04.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2661347256, 0x0, 559484976) start.
17-03-17 19:24:04.338 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:24:04.338 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 19:24:04.338 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 19:24:04.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2661347256, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:24:04.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:04.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:24:04.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:24:04.438 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:04.438 -07 000000431 INF: Autofocus start
17-03-17 19:24:04.438 -07 000000431 INF: MeasureProfile start
17-03-17 19:24:04.438 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:04.448 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:24:04.448 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:24:04.448 -07 000000431 INF: MeasureProfile done
17-03-17 19:24:04.448 -07 000000431 INF: X=32  Z correction [um]=0.1299841
17-03-17 19:24:04.458 -07 000000431 INF: Autofocus finished
17-03-17 19:24:04.648 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:24:04.648 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 19:24:04.648 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139563867375709. ----------
17-03-17 19:24:04.648 -07 000000610 INF: Cycle	25	Tile	4	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:24:04.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29024, sync = True, waitForSettling = True)
17-03-17 19:24:04.658 -07 000000610 INF: Z Motor: Moving to -0.132863 mm, started at -0.139564 mm, distance = 6.70 um
17-03-17 19:24:04.658 -07 000000610 INF: FPGA: Xmit ZDACW 29024\n [Z Motor]
17-03-17 19:24:04.658 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:24:04.668 -07 000000610 INF: FPGA: 'ZDACW 29024' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:24:04.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:04.668 -07 000000012 INF: FPGA: Recv ZDACR 29024
17-03-17 19:24:04.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:04.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:24:04.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:04.828 -07 000000541 INF: FPGA: Recv ZSGSRD 29977
17-03-17 19:24:04.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:04.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:04.838 -07 000000541 INF: FPGA: Recv ZSGSRD 29969
17-03-17 19:24:04.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:04.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:04.848 -07 000000541 INF: FPGA: Recv ZSGSRD 29972
17-03-17 19:24:04.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:04.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:04.858 -07 000000541 INF: FPGA: Recv ZSGSRD 29969
17-03-17 19:24:04.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:04.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:04.868 -07 000000541 INF: FPGA: Recv ZSGSRD 29972
17-03-17 19:24:04.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:04.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:04.878 -07 000000541 INF: FPGA: Recv ZSGSRD 29974
17-03-17 19:24:04.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:04.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:04.888 -07 000000541 INF: FPGA: Recv ZSGSRD 29970
17-03-17 19:24:04.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:04.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:04.898 -07 000000541 INF: FPGA: Recv ZSGSRD 29972
17-03-17 19:24:04.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:04.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:04.908 -07 000000012 INF: FPGA: Recv ZSGSRD 29971
17-03-17 19:24:04.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:04.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:04.918 -07 000000541 INF: FPGA: Recv ZSGSRD 29975
17-03-17 19:24:04.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:04.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:04.928 -07 000000476 INF: FPGA: Recv ZPIEZORD 25636
17-03-17 19:24:04.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:04.938 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.429 V. Piezo Error = -9.5 V.
17-03-17 19:24:04.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29972 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29972 (-132.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29969 (-132.1 uncal um), Max = 29977 (-132.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:24:04.938 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29972, posNoise = 5, negNoise = 3
17-03-17 19:24:04.938 -07 000000610 INF: Z Motor: After move to -0.132863, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:04.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:24:04.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:04.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:04.938 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:04.938 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:04.938 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:24:04.938 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:24:04.938 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:04.938 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:24:04.938 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:24:04.938 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:24:04.938 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:04.938 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:24:04.948 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:24:04.948 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:24:04.948 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:24:04.948 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:24:04.958 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:24:04.958 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:24:04.958 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:24:04.958 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:24:04.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 29200 150\n [Camera]
17-03-17 19:24:05.158 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 19:24:05.558 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:24:05.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:24:05.558 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:05.558 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:05.558 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1058279472, 0x0, 391868352) start.
17-03-17 19:24:05.558 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:24:05.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:24:05.568 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:05.568 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:05.568 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1093701736, 0x0, 418435064) start.
17-03-17 19:24:05.748 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29200 786
17-03-17 19:24:05.818 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.001704,
17-03-17 19:24:05.898 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:24:05.958 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1058279472, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:24:05.958 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:24:05.958 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:05.958 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1093701736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:24:05.958 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:24:05.958 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:05.958 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:05.958 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:24:05.968 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:05.968 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:24:06.088 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:24:06.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:24:06.098 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:06.098 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:06.098 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1129124000, 0x0, 391868352) start.
17-03-17 19:24:06.098 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:24:06.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:24:06.098 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:06.098 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:06.098 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:24:06.288 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-17 19:24:06.288 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:24:06.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 29200 150' command took 2 ms to send, 1321 ms to get response, and 1329 ms overall
17-03-17 19:24:06.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:24:06.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132869838323994. ------
17-03-17 19:24:06.288 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:06.288 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13961 mm
17-03-17 19:24:06.288 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:24:06.288 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:24:06.288 -07 000000476 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 19:24:06.288 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:06.298 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:24:06.298 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 30498, sync = True, waitForSettling = False)
17-03-17 19:24:06.298 -07 000000433 INF: Z Motor: Moving to -0.139611 mm, started at -0.132870 mm, distance = -6.74 um
17-03-17 19:24:06.298 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:06.298 -07 000000626 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:24:06.308 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:06.308 -07 000000476 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:06.308 -07 000000433 INF: FPGA: Xmit ZDACW 30498\n [Z Motor]
17-03-17 19:24:06.418 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:24:06.418 -07 000000433 INF: FPGA: 'ZDACW 30498' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-17 19:24:06.418 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:24:06.418 -07 000000476 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:24:06.418 -07 000000476 INF: Y Motor: Moving 1339 steps-15
17-03-17 19:24:06.428 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:06.428 -07 000000012 INF: FPGA: Recv ZDACR 30498
17-03-17 19:24:06.438 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:24:06.438 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:24:06.438 -07 000000433 INF: Z Motor: MoveAbsStepped took 140 ms (did NOT wait for settling yet))
17-03-17 19:24:06.498 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1129124000, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:24:06.498 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:24:06.498 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:06.498 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:24:06.498 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:24:06.498 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:06.498 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:06.508 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:24:06.508 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:24:06.508 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:24:06.618 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:24:06.618 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 326 ms overall
17-03-17 19:24:06.678 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:24:06.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:24:06.818 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 19:24:06.818 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 397 ms overall
17-03-17 19:24:06.848 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:06.858 -07 000000424 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:24:06.858 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:24:06.858 -07 000000476 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:06.858 -07 000000476 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:24:06.858 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-17 19:24:07.808 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:07.808 -07 000000486 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:24:07.818 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:07.818 -07 000000476 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:07.838 -07 000000476 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:24:07.838 -07 000000476 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:24:07.838 -07 000000476 INF: Y Motor: Moved to 63.2241 after 1542 ms (table move)
17-03-17 19:24:07.838 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139611 mm (DAC = 30498)
17-03-17 19:24:07.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:07.838 -07 000000482 INF: FPGA: Recv ZSGSRD 31017
17-03-17 19:24:07.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:24:07.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:07.848 -07 000000433 INF: FPGA: Recv ZSGSRD 31014
17-03-17 19:24:07.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:07.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:07.858 -07 000000626 INF: FPGA: Recv ZSGSRD 31017
17-03-17 19:24:07.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:07.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:07.868 -07 000000502 INF: FPGA: Recv ZSGSRD 31023
17-03-17 19:24:07.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:07.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:07.878 -07 000000482 INF: FPGA: Recv ZSGSRD 31031
17-03-17 19:24:07.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:07.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:07.888 -07 000000569 INF: FPGA: Recv ZSGSRD 31030
17-03-17 19:24:07.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:07.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:07.898 -07 000000626 INF: FPGA: Recv ZSGSRD 31023
17-03-17 19:24:07.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:07.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:07.908 -07 000000012 INF: FPGA: Recv ZSGSRD 31016
17-03-17 19:24:07.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:07.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:07.918 -07 000000424 INF: FPGA: Recv ZSGSRD 31015
17-03-17 19:24:07.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:07.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:07.928 -07 000000569 INF: FPGA: Recv ZSGSRD 31022
17-03-17 19:24:07.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:07.938 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:07.938 -07 000000626 INF: FPGA: Recv ZPIEZORD 27022
17-03-17 19:24:07.948 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:07.948 -07 000000431 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.654 V. Piezo Error = -8.8 V.
17-03-17 19:24:07.948 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31021 (-138.8 uncal um), Error = 0.8 uncal um, Median = 31020 (-138.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 31014 (-138.8 uncal um), Max = 31031 (-138.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:24:07.948 -07 000000431 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31021, posNoise = 10, negNoise = 7
17-03-17 19:24:07.948 -07 000000431 INF: Z Motor: After move to -0.139611, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:07.948 -07 000000431 INF: Z Motor: Settle wait time = 1545 ms, measure time = 105 ms (allowed 150 ms), total time = 1650 ms
17-03-17 19:24:07.948 -07 000000431 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:24:07.998 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1703 ms
17-03-17 19:24:07.998 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:24:07.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:07.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:07.998 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:07.998 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:07.998 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:24:07.998 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:08.008 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:08.008 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:24:08.008 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:24:08.008 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:24:08.008 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:24:08.008 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:24:08.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:24:08.058 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:24:08.258 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:24:08.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:24:08.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:24:08.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:24:08.298 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:24:08.298 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 19:24:08.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:24:08.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:24:08.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:08.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:24:08.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:24:08.398 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:08.398 -07 000000623 INF: Autofocus start
17-03-17 19:24:08.398 -07 000000623 INF: MeasureProfile start
17-03-17 19:24:08.398 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:08.408 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:24:08.408 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:24:08.408 -07 000000623 INF: MeasureProfile done
17-03-17 19:24:08.408 -07 000000623 INF: X=-70  Z correction [um]=-0.3441503
17-03-17 19:24:08.408 -07 000000623 INF: Autofocus finished
17-03-17 19:24:08.608 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:24:08.608 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:24:08.608 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.139608836860702. ----------
17-03-17 19:24:08.618 -07 000000610 INF: Cycle	25	Tile	5	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:24:08.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28935, sync = True, waitForSettling = True)
17-03-17 19:24:08.618 -07 000000610 INF: Z Motor: Moving to -0.132456 mm, started at -0.139609 mm, distance = 7.15 um
17-03-17 19:24:08.618 -07 000000610 INF: FPGA: Xmit ZDACW 28935\n [Z Motor]
17-03-17 19:24:08.618 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:24:08.628 -07 000000610 INF: FPGA: 'ZDACW 28935' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:24:08.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:08.628 -07 000000569 INF: FPGA: Recv ZDACR 28935
17-03-17 19:24:08.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:08.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:24:08.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:08.788 -07 000000482 INF: FPGA: Recv ZSGSRD 29913
17-03-17 19:24:08.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:08.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:08.798 -07 000000623 INF: FPGA: Recv ZSGSRD 29910
17-03-17 19:24:08.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:08.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:08.808 -07 000000541 INF: FPGA: Recv ZSGSRD 29903
17-03-17 19:24:08.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:08.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:08.818 -07 000000476 INF: FPGA: Recv ZSGSRD 29905
17-03-17 19:24:08.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:08.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:08.828 -07 000000569 INF: FPGA: Recv ZSGSRD 29909
17-03-17 19:24:08.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:08.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:08.838 -07 000000486 INF: FPGA: Recv ZSGSRD 29914
17-03-17 19:24:08.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:08.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:08.848 -07 000000623 INF: FPGA: Recv ZSGSRD 29901
17-03-17 19:24:08.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:08.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:08.858 -07 000000382 INF: FPGA: Recv ZSGSRD 29909
17-03-17 19:24:08.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:08.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:08.868 -07 000000475 INF: FPGA: Recv ZSGSRD 29917
17-03-17 19:24:08.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:08.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:08.878 -07 000000569 INF: FPGA: Recv ZSGSRD 29907
17-03-17 19:24:08.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:08.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:08.888 -07 000000480 INF: FPGA: Recv ZPIEZORD 25579
17-03-17 19:24:08.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:08.898 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.415 V. Piezo Error = -9.5 V.
17-03-17 19:24:08.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29909 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29909 (-131.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29901 (-131.6 uncal um), Max = 29917 (-131.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:24:08.898 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29909, posNoise = 8, negNoise = 8
17-03-17 19:24:08.898 -07 000000610 INF: Z Motor: After move to -0.132456, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:08.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:24:08.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:08.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:08.898 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:08.898 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:08.898 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:24:08.898 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:08.898 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:24:08.898 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:24:08.898 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:08.898 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:24:08.898 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:24:08.898 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:24:08.908 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:24:08.908 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:24:08.908 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:24:08.908 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:24:08.918 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:24:08.918 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:24:08.918 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:24:08.918 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:24:08.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 29112 150\n [Camera]
17-03-17 19:24:09.118 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:24:09.518 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:24:09.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:24:09.518 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:09.518 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:24:09.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:24:09.528 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:09.528 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:09.528 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:24:09.528 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:09.528 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:24:09.718 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29112 789
17-03-17 19:24:09.858 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:24:09.918 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:24:09.918 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:24:09.918 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:09.918 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 19:24:09.918 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:24:09.918 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:09.928 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:09.928 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:24:09.928 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:09.928 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:24:10.058 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:24:10.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:24:10.058 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:10.058 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:24:10.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:24:10.058 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:10.058 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:10.058 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:24:10.068 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:10.068 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 19:24:10.248 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:24:10.248 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:24:10.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 29112 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-17 19:24:10.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:24:10.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132465112959063. ------
17-03-17 19:24:10.368 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:10.368 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13897 mm
17-03-17 19:24:10.368 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:24:10.368 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:10.368 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:24:10.368 -07 000000476 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 19:24:10.368 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30358, sync = True, waitForSettling = False)
17-03-17 19:24:10.368 -07 000000382 INF: Z Motor: Moving to -0.138970 mm, started at -0.132465 mm, distance = -6.50 um
17-03-17 19:24:10.378 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:24:10.378 -07 000000382 INF: FPGA: Xmit ZDACW 30358\n [Z Motor]
17-03-17 19:24:10.378 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:24:10.388 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:10.388 -07 000000382 INF: FPGA: 'ZDACW 30358' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:24:10.388 -07 000000480 INF: FPGA: Recv YRDPOS 129484
17-03-17 19:24:10.398 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:24:10.398 -07 000000476 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:10.398 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:24:10.398 -07 000000476 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:24:10.398 -07 000000476 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:24:10.408 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:10.408 -07 000000561 INF: FPGA: Recv ZDACR 30358
17-03-17 19:24:10.418 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:24:10.418 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:24:10.418 -07 000000382 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 19:24:10.448 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:24:10.448 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:24:10.448 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:10.458 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 19:24:10.458 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:24:10.458 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:10.458 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:10.458 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:10.458 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:24:10.458 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:24:10.598 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:24:10.598 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:24:10.788 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 19:24:10.788 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 19:24:10.828 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:10.828 -07 000000382 INF: FPGA: Recv YRDPOS 131188
17-03-17 19:24:10.838 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:24:10.838 -07 000000476 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:10.838 -07 000000476 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 19:24:10.838 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.123 mm/sec
17-03-17 19:24:11.178 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.989471,
17-03-17 19:24:11.678 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:24:11.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:24:11.788 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:11.788 -07 000000482 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:24:11.798 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:11.798 -07 000000476 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:11.808 -07 000000476 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:24:11.808 -07 000000476 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:24:11.808 -07 000000476 INF: Y Motor: Moved to 64.0571 after 1440 ms (table move)
17-03-17 19:24:11.818 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138970 mm (DAC = 30358)
17-03-17 19:24:11.818 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:11.818 -07 000000424 INF: FPGA: Recv ZSGSRD 30927
17-03-17 19:24:11.828 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:24:11.828 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:11.828 -07 000000462 INF: FPGA: Recv ZSGSRD 30925
17-03-17 19:24:11.838 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:11.838 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:11.838 -07 000000424 INF: FPGA: Recv ZSGSRD 30922
17-03-17 19:24:11.848 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:11.848 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:11.848 -07 000000476 INF: FPGA: Recv ZSGSRD 30936
17-03-17 19:24:11.858 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:11.858 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:11.858 -07 000000486 INF: FPGA: Recv ZSGSRD 30913
17-03-17 19:24:11.868 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:11.868 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:11.868 -07 000000424 INF: FPGA: Recv ZSGSRD 30919
17-03-17 19:24:11.878 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:11.878 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:11.878 -07 000000623 INF: FPGA: Recv ZSGSRD 30923
17-03-17 19:24:11.888 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:11.888 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:11.888 -07 000000462 INF: FPGA: Recv ZSGSRD 30915
17-03-17 19:24:11.898 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:11.898 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:11.898 -07 000000623 INF: FPGA: Recv ZSGSRD 30924
17-03-17 19:24:11.908 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:11.908 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:11.908 -07 000000561 INF: FPGA: Recv ZSGSRD 30918
17-03-17 19:24:11.918 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:24:11.918 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:11.918 -07 000000569 INF: FPGA: Recv ZPIEZORD 26905
17-03-17 19:24:11.928 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:11.928 -07 000000433 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.632 V. Piezo Error = -8.8 V.
17-03-17 19:24:11.928 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30922 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30922 (-138.2 uncal um), StdDev = 7 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 30913 (-138.1 uncal um), Max = 30936 (-138.3 uncal um), Pos Noise = 14 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:24:11.928 -07 000000433 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30922, posNoise = 14, negNoise = 9
17-03-17 19:24:11.928 -07 000000433 INF: Z Motor: After move to -0.138970, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:11.928 -07 000000433 INF: Z Motor: Settle wait time = 1443 ms, measure time = 108 ms (allowed 150 ms), total time = 1551 ms
17-03-17 19:24:11.928 -07 000000433 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:24:11.978 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 19:24:11.978 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:24:11.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:11.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:11.978 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:11.978 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:24:11.978 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:11.978 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:11.978 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:11.978 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:24:11.978 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:24:11.978 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:24:11.998 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:24:11.998 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:24:11.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:24:12.048 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:24:12.248 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:24:12.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:24:12.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:24:12.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:24:12.288 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:24:12.288 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 19:24:12.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 19:24:12.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:24:12.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:12.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:24:12.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:24:12.388 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:12.388 -07 000000462 INF: Autofocus start
17-03-17 19:24:12.388 -07 000000462 INF: MeasureProfile start
17-03-17 19:24:12.388 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:12.398 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:24:12.398 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:24:12.408 -07 000000462 INF: MeasureProfile done
17-03-17 19:24:12.408 -07 000000462 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:24:12.408 -07 000000462 INF: Autofocus finished
17-03-17 19:24:12.598 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:24:12.598 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:24:12.598 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138972839858667. ----------
17-03-17 19:24:12.598 -07 000000610 INF: Cycle	25	Tile	6	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:24:12.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28853, sync = True, waitForSettling = True)
17-03-17 19:24:12.608 -07 000000610 INF: Z Motor: Moving to -0.132081 mm, started at -0.138973 mm, distance = 6.89 um
17-03-17 19:24:12.608 -07 000000610 INF: FPGA: Xmit ZDACW 28853\n [Z Motor]
17-03-17 19:24:12.608 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:24:12.618 -07 000000610 INF: FPGA: 'ZDACW 28853' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:12.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:12.618 -07 000000561 INF: FPGA: Recv ZDACR 28853
17-03-17 19:24:12.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:12.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:24:12.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:12.778 -07 000000482 INF: FPGA: Recv ZSGSRD 29854
17-03-17 19:24:12.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:12.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:12.788 -07 000000480 INF: FPGA: Recv ZSGSRD 29850
17-03-17 19:24:12.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:12.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:12.798 -07 000000623 INF: FPGA: Recv ZSGSRD 29848
17-03-17 19:24:12.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:12.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:12.808 -07 000000561 INF: FPGA: Recv ZSGSRD 29847
17-03-17 19:24:12.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:12.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:12.818 -07 000000476 INF: FPGA: Recv ZSGSRD 29850
17-03-17 19:24:12.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:12.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:12.828 -07 000000480 INF: FPGA: Recv ZSGSRD 29855
17-03-17 19:24:12.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:12.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:12.838 -07 000000462 INF: FPGA: Recv ZSGSRD 29842
17-03-17 19:24:12.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:12.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:12.848 -07 000000561 INF: FPGA: Recv ZSGSRD 29851
17-03-17 19:24:12.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:12.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:12.858 -07 000000476 INF: FPGA: Recv ZSGSRD 29855
17-03-17 19:24:12.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:12.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:12.868 -07 000000486 INF: FPGA: Recv ZSGSRD 29854
17-03-17 19:24:12.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:12.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:12.878 -07 000000433 INF: FPGA: Recv ZPIEZORD 25509
17-03-17 19:24:12.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:12.888 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -9.5 V.
17-03-17 19:24:12.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29851 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29850 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29842 (-131.3 uncal um), Max = 29855 (-131.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:24:12.888 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29851, posNoise = 4, negNoise = 9
17-03-17 19:24:12.888 -07 000000610 INF: Z Motor: After move to -0.132081, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:12.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:24:12.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:12.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:12.888 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:12.888 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:12.888 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:24:12.888 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:12.888 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:24:12.888 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:24:12.888 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:12.888 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:24:12.888 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:24:12.888 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:24:12.898 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:24:12.898 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:24:12.898 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:24:12.898 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:24:12.908 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:24:12.908 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:24:12.908 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:24:12.908 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:24:12.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 29030 150\n [Camera]
17-03-17 19:24:13.118 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 19:24:13.518 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:24:13.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:24:13.518 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:13.518 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:24:13.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:24:13.518 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:13.518 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:13.518 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:24:13.528 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:13.528 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:24:13.708 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29030 786
17-03-17 19:24:13.858 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:24:13.918 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:24:13.918 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:24:13.918 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:13.918 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:13.918 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:24:13.918 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:24:13.918 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:24:13.918 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:13.928 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:24:13.928 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:24:14.048 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:24:14.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:24:14.048 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:14.048 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:24:14.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:24:14.058 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:14.058 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:14.058 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 19:24:14.058 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:14.058 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:24:14.238 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-17 19:24:14.238 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:24:14.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 29030 150' command took 2 ms to send, 1318 ms to get response, and 1329 ms overall
17-03-17 19:24:14.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:24:14.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.132092508654841. ------
17-03-17 19:24:14.248 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13861 mm
17-03-17 19:24:14.248 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:24:14.248 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:14.248 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:24:14.248 -07 000000569 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 19:24:14.248 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30279, sync = True, waitForSettling = False)
17-03-17 19:24:14.248 -07 000000424 INF: Z Motor: Moving to -0.138608 mm, started at -0.132093 mm, distance = -6.52 um
17-03-17 19:24:14.248 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:14.258 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:24:14.258 -07 000000424 INF: FPGA: Xmit ZDACW 30279\n [Z Motor]
17-03-17 19:24:14.258 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:24:14.268 -07 000000424 INF: FPGA: 'ZDACW 30279' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:24:14.268 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:14.268 -07 000000012 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:24:14.278 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:24:14.278 -07 000000569 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:24:14.278 -07 000000569 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:14.278 -07 000000569 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:24:14.278 -07 000000569 INF: Y Motor: Moving 1337 steps-12
17-03-17 19:24:14.288 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:14.288 -07 000000012 INF: FPGA: Recv ZDACR 30279
17-03-17 19:24:14.298 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:24:14.298 -07 000000424 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 19:24:14.298 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:24:14.458 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 19:24:14.458 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:24:14.458 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:14.458 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 19:24:14.458 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:24:14.458 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:14.468 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:24:14.468 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:24:14.468 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 19:24:14.468 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 19:24:14.478 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:24:14.478 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:24:14.668 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:24:14.668 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 19:24:14.708 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:14.708 -07 000000012 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:24:14.718 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:24:14.718 -07 000000569 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:14.718 -07 000000569 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:24:14.718 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec
17-03-17 19:24:15.668 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:15.668 -07 000000431 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:24:15.678 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:15.678 -07 000000569 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:15.698 -07 000000569 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:24:15.698 -07 000000569 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:24:15.698 -07 000000569 INF: Y Motor: Moved to 64.8789 after 1444 ms (table move)
17-03-17 19:24:15.698 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138608 mm (DAC = 30279)
17-03-17 19:24:15.698 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:15.698 -07 000000382 INF: FPGA: Recv ZSGSRD 30866
17-03-17 19:24:15.708 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:24:15.708 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:15.708 -07 000000486 INF: FPGA: Recv ZSGSRD 30868
17-03-17 19:24:15.718 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:15.718 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:15.718 -07 000000382 INF: FPGA: Recv ZSGSRD 30867
17-03-17 19:24:15.728 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:15.728 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:15.728 -07 000000476 INF: FPGA: Recv ZSGSRD 30866
17-03-17 19:24:15.738 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:15.738 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:15.738 -07 000000486 INF: FPGA: Recv ZSGSRD 30874
17-03-17 19:24:15.748 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:15.748 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:15.748 -07 000000541 INF: FPGA: Recv ZSGSRD 30867
17-03-17 19:24:15.758 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:15.758 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:15.758 -07 000000486 INF: FPGA: Recv ZSGSRD 30868
17-03-17 19:24:15.768 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:15.768 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:15.768 -07 000000482 INF: FPGA: Recv ZSGSRD 30861
17-03-17 19:24:15.778 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:15.778 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:15.778 -07 000000486 INF: FPGA: Recv ZSGSRD 30860
17-03-17 19:24:15.788 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:15.788 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:15.788 -07 000000561 INF: FPGA: Recv ZSGSRD 30864
17-03-17 19:24:15.798 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:15.798 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:15.798 -07 000000482 INF: FPGA: Recv ZPIEZORD 26864
17-03-17 19:24:15.808 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:15.808 -07 000000462 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.620 V. Piezo Error = -8.8 V.
17-03-17 19:24:15.808 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30866 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30866 (-137.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30860 (-137.8 uncal um), Max = 30874 (-137.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:24:15.808 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30866, posNoise = 8, negNoise = 6
17-03-17 19:24:15.808 -07 000000462 INF: Z Motor: After move to -0.138608, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:15.808 -07 000000462 INF: Z Motor: Settle wait time = 1447 ms, measure time = 105 ms (allowed 150 ms), total time = 1552 ms
17-03-17 19:24:15.808 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:24:15.858 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 19:24:15.858 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:24:15.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:15.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:15.858 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:15.858 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:15.858 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:24:15.858 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:15.868 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:15.868 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:24:15.868 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:24:15.868 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:24:15.878 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:24:15.878 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:24:15.878 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:24:15.918 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:24:16.118 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:24:16.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:24:16.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:24:16.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 19:24:16.158 -07 000000486 INF: FPGA: Recv @CAMSNAP 281
17-03-17 19:24:16.158 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 19:24:16.158 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 19:24:16.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 19:24:16.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:16.238 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:24:16.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:24:16.258 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:16.258 -07 000000480 INF: Autofocus start
17-03-17 19:24:16.258 -07 000000480 INF: MeasureProfile start
17-03-17 19:24:16.258 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:16.268 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:24:16.268 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:24:16.268 -07 000000480 INF: MeasureProfile done
17-03-17 19:24:16.268 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:24:16.268 -07 000000480 INF: Autofocus finished
17-03-17 19:24:16.468 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:24:16.468 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:24:16.468 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.138613083978729. ----------
17-03-17 19:24:16.468 -07 000000610 INF: Cycle	25	Tile	7	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:24:16.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28803, sync = True, waitForSettling = True)
17-03-17 19:24:16.478 -07 000000610 INF: Z Motor: Moving to -0.131852 mm, started at -0.138613 mm, distance = 6.76 um
17-03-17 19:24:16.478 -07 000000610 INF: FPGA: Xmit ZDACW 28803\n [Z Motor]
17-03-17 19:24:16.478 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:24:16.488 -07 000000610 INF: FPGA: 'ZDACW 28803' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:24:16.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:16.488 -07 000000424 INF: FPGA: Recv ZDACR 28803
17-03-17 19:24:16.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:16.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:24:16.538 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.971733,
17-03-17 19:24:16.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:16.648 -07 000000623 INF: FPGA: Recv ZSGSRD 29816
17-03-17 19:24:16.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:16.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:16.658 -07 000000382 INF: FPGA: Recv ZSGSRD 29815
17-03-17 19:24:16.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:16.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:16.668 -07 000000431 INF: FPGA: Recv ZSGSRD 29824
17-03-17 19:24:16.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:16.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:16.678 -07 000000482 INF: FPGA: Recv ZSGSRD 29812
17-03-17 19:24:16.678 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:24:16.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:16.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:16.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:24:16.688 -07 000000623 INF: FPGA: Recv ZSGSRD 29820
17-03-17 19:24:16.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:16.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:16.698 -07 000000482 INF: FPGA: Recv ZSGSRD 29819
17-03-17 19:24:16.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:16.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:16.708 -07 000000623 INF: FPGA: Recv ZSGSRD 29811
17-03-17 19:24:16.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:16.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:16.718 -07 000000462 INF: FPGA: Recv ZSGSRD 29818
17-03-17 19:24:16.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:16.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:16.728 -07 000000431 INF: FPGA: Recv ZSGSRD 29807
17-03-17 19:24:16.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:16.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:16.738 -07 000000433 INF: FPGA: Recv ZSGSRD 29816
17-03-17 19:24:16.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:16.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:16.748 -07 000000462 INF: FPGA: Recv ZPIEZORD 25492
17-03-17 19:24:16.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:16.758 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.395 V. Piezo Error = -9.5 V.
17-03-17 19:24:16.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29816 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29816 (-131.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29807 (-131.0 uncal um), Max = 29824 (-131.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:24:16.758 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29816, posNoise = 8, negNoise = 9
17-03-17 19:24:16.758 -07 000000610 INF: Z Motor: After move to -0.131852, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:16.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:24:16.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:16.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:16.758 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:16.758 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:24:16.758 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:16.758 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:24:16.758 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:16.758 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:24:16.758 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:16.758 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:24:16.758 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:24:16.758 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:24:16.768 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:24:16.768 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:24:16.768 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:24:16.768 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:24:16.778 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:24:16.778 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:24:16.778 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:24:16.778 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:24:16.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 28980 150\n [Camera]
17-03-17 19:24:16.978 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:24:17.378 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:24:17.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:24:17.378 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:17.378 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:17.378 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:24:17.378 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:24:17.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:24:17.378 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:17.378 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:17.378 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:24:17.568 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28980 786
17-03-17 19:24:17.718 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:24:17.778 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 19:24:17.778 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:24:17.788 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:17.788 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:24:17.788 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:24:17.788 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:17.788 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:24:17.788 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:24:17.788 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:24:17.798 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:24:17.918 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:24:17.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:24:17.918 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:17.918 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:17.918 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:24:17.918 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:24:17.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:24:17.918 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:17.918 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:17.918 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:24:18.108 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-17 19:24:18.108 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:24:18.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 28980 150' command took 2 ms to send, 1322 ms to get response, and 1328 ms overall
17-03-17 19:24:18.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:24:18.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.13186766122988. ------
17-03-17 19:24:18.228 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:18.228 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13847 mm
17-03-17 19:24:18.228 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:24:18.228 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:18.238 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:24:18.238 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:24:18.238 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:24:18.238 -07 000000382 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 19:24:18.238 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30248, sync = True, waitForSettling = False)
17-03-17 19:24:18.238 -07 000000482 INF: Z Motor: Moving to -0.138466 mm, started at -0.131868 mm, distance = -6.60 um
17-03-17 19:24:18.248 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:18.248 -07 000000462 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:24:18.258 -07 000000482 INF: FPGA: Xmit ZDACW 30248\n [Z Motor]
17-03-17 19:24:18.258 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:24:18.258 -07 000000382 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:18.258 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:24:18.258 -07 000000382 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:24:18.258 -07 000000382 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:24:18.268 -07 000000482 INF: FPGA: 'ZDACW 30248' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:24:18.268 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:18.268 -07 000000561 INF: FPGA: Recv ZDACR 30248
17-03-17 19:24:18.278 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:18.278 -07 000000482 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 19:24:18.278 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:24:18.318 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 19:24:18.318 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:24:18.318 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:18.328 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:24:18.328 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:24:18.328 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:18.328 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:18.328 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 19:24:18.328 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 19:24:18.338 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:24:18.438 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:24:18.438 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:24:18.648 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 19:24:18.648 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:24:18.688 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:18.688 -07 000000012 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:24:18.698 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:24:18.698 -07 000000382 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:18.698 -07 000000382 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:24:18.698 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.147 mm/sec
17-03-17 19:24:19.648 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:19.648 -07 000000476 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:24:19.658 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:19.658 -07 000000382 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:19.678 -07 000000382 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:24:19.678 -07 000000382 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:24:19.678 -07 000000382 INF: Y Motor: Moved to 65.7144 after 1443 ms (table move)
17-03-17 19:24:19.678 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138466 mm (DAC = 30248)
17-03-17 19:24:19.678 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:19.688 -07 000000486 INF: FPGA: Recv ZSGSRD 30845
17-03-17 19:24:19.688 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:24:19.688 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:19.688 -07 000000462 INF: FPGA: Recv ZSGSRD 30839
17-03-17 19:24:19.698 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:24:19.698 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:19.698 -07 000000012 INF: FPGA: Recv ZSGSRD 30851
17-03-17 19:24:19.708 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:19.708 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:19.708 -07 000000424 INF: FPGA: Recv ZSGSRD 30849
17-03-17 19:24:19.718 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:19.718 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:19.718 -07 000000012 INF: FPGA: Recv ZSGSRD 30846
17-03-17 19:24:19.728 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:19.728 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:19.728 -07 000000462 INF: FPGA: Recv ZSGSRD 30844
17-03-17 19:24:19.738 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:19.738 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:19.738 -07 000000462 INF: FPGA: Recv ZSGSRD 30838
17-03-17 19:24:19.748 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:19.748 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:19.748 -07 000000433 INF: FPGA: Recv ZSGSRD 30836
17-03-17 19:24:19.758 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:19.758 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:19.758 -07 000000012 INF: FPGA: Recv ZSGSRD 30839
17-03-17 19:24:19.768 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:19.768 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:19.768 -07 000000382 INF: FPGA: Recv ZSGSRD 30847
17-03-17 19:24:19.778 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:19.778 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:19.778 -07 000000433 INF: FPGA: Recv ZPIEZORD 26851
17-03-17 19:24:19.788 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:19.788 -07 000000480 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.616 V. Piezo Error = -8.8 V.
17-03-17 19:24:19.788 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30843 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30844 (-137.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30836 (-137.6 uncal um), Max = 30851 (-137.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:24:19.788 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30843, posNoise = 8, negNoise = 7
17-03-17 19:24:19.788 -07 000000480 INF: Z Motor: After move to -0.138466, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:19.788 -07 000000480 INF: Z Motor: Settle wait time = 1445 ms, measure time = 103 ms (allowed 150 ms), total time = 1548 ms
17-03-17 19:24:19.788 -07 000000480 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:24:19.838 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 19:24:19.838 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:24:19.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:19.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:19.838 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:19.838 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:24:19.838 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:19.838 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:19.838 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:19.838 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:24:19.848 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:24:19.848 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:24:19.858 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 19:24:19.858 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 19:24:19.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:24:19.908 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:24:20.098 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:24:20.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:24:20.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:24:20.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:24:20.138 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:24:20.148 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 19:24:20.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 287 ms overall
17-03-17 19:24:20.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:24:20.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:20.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:24:20.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:24:20.248 -07 000000382 INF: Autofocus start
17-03-17 19:24:20.248 -07 000000382 INF: MeasureProfile start
17-03-17 19:24:20.248 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:20.248 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:20.258 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:24:20.258 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:24:20.258 -07 000000382 INF: MeasureProfile done
17-03-17 19:24:20.258 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:24:20.258 -07 000000382 INF: Autofocus finished
17-03-17 19:24:20.458 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:24:20.458 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:24:20.458 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138465327099468. ----------
17-03-17 19:24:20.458 -07 000000610 INF: Cycle	25	Tile	8	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:24:20.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28756, sync = True, waitForSettling = True)
17-03-17 19:24:20.468 -07 000000610 INF: Z Motor: Moving to -0.131637 mm, started at -0.138465 mm, distance = 6.83 um
17-03-17 19:24:20.468 -07 000000610 INF: FPGA: Xmit ZDACW 28756\n [Z Motor]
17-03-17 19:24:20.468 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:24:20.478 -07 000000610 INF: FPGA: 'ZDACW 28756' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:24:20.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:20.478 -07 000000433 INF: FPGA: Recv ZDACR 28756
17-03-17 19:24:20.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:20.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:24:20.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:20.638 -07 000000424 INF: FPGA: Recv ZSGSRD 29787
17-03-17 19:24:20.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:20.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:20.648 -07 000000541 INF: FPGA: Recv ZSGSRD 29781
17-03-17 19:24:20.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:20.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:20.658 -07 000000424 INF: FPGA: Recv ZSGSRD 29773
17-03-17 19:24:20.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:20.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:20.668 -07 000000561 INF: FPGA: Recv ZSGSRD 29793
17-03-17 19:24:20.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:20.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:20.678 -07 000000012 INF: FPGA: Recv ZSGSRD 29781
17-03-17 19:24:20.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:20.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:20.688 -07 000000561 INF: FPGA: Recv ZSGSRD 29775
17-03-17 19:24:20.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:20.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:20.698 -07 000000486 INF: FPGA: Recv ZSGSRD 29775
17-03-17 19:24:20.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:20.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:20.708 -07 000000561 INF: FPGA: Recv ZSGSRD 29773
17-03-17 19:24:20.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:20.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:20.718 -07 000000012 INF: FPGA: Recv ZSGSRD 29788
17-03-17 19:24:20.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:20.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:20.728 -07 000000431 INF: FPGA: Recv ZSGSRD 29779
17-03-17 19:24:20.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:20.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:20.738 -07 000000480 INF: FPGA: Recv ZPIEZORD 25424
17-03-17 19:24:20.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:20.748 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -9.6 V.
17-03-17 19:24:20.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29780 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29780 (-130.9 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 29773 (-130.8 uncal um), Max = 29793 (-130.9 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:24:20.748 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29780, posNoise = 13, negNoise = 7
17-03-17 19:24:20.748 -07 000000610 INF: Z Motor: After move to -0.131637, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:20.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:24:20.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:20.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:20.748 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:20.748 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:20.748 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:24:20.748 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:20.748 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:24:20.748 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:24:20.748 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:20.748 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:24:20.748 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:24:20.748 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:24:20.758 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:24:20.758 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:24:20.758 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:24:20.758 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:24:20.768 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:24:20.768 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:24:20.768 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:24:20.768 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:24:20.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 28932 150\n [Camera]
17-03-17 19:24:20.968 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:24:21.368 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:24:21.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:24:21.368 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:21.368 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:24:21.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:24:21.368 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:21.378 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:21.378 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:24:21.378 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:21.378 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:24:21.568 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28932 789
17-03-17 19:24:21.678 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:24:21.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:24:21.708 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:24:21.768 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:24:21.768 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:24:21.768 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:21.768 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:24:21.768 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:24:21.768 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:21.778 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:21.778 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:24:21.778 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:24:21.788 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:24:21.898 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.975845,
17-03-17 19:24:21.908 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:24:21.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:24:21.908 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:21.908 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:24:21.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:24:21.908 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:21.918 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:21.918 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:24:21.918 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:21.918 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:24:22.098 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:24:22.098 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:24:22.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 28932 150' command took 2 ms to send, 1323 ms to get response, and 1328 ms overall
17-03-17 19:24:22.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:24:22.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131636389592776. ------
17-03-17 19:24:22.098 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:22.108 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13793 mm
17-03-17 19:24:22.108 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:24:22.218 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:22.218 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-17 19:24:22.218 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:24:22.218 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:24:22.218 -07 000000462 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 19:24:22.218 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30132, sync = True, waitForSettling = False)
17-03-17 19:24:22.218 -07 000000480 INF: Z Motor: Moving to -0.137935 mm, started at -0.131636 mm, distance = -6.30 um
17-03-17 19:24:22.228 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:22.228 -07 000000424 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:24:22.238 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:24:22.238 -07 000000462 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:22.238 -07 000000462 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:24:22.238 -07 000000462 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:24:22.238 -07 000000480 INF: FPGA: Xmit ZDACW 30132\n [Z Motor]
17-03-17 19:24:22.238 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:24:22.248 -07 000000480 INF: FPGA: 'ZDACW 30132' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:24:22.248 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:22.248 -07 000000431 INF: FPGA: Recv ZDACR 30132
17-03-17 19:24:22.258 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:24:22.258 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:22.258 -07 000000480 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 19:24:22.308 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 19:24:22.308 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:24:22.308 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:22.308 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:24:22.308 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:24:22.308 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:22.318 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:24:22.318 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:24:22.318 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 19:24:22.318 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:24:22.418 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:24:22.418 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-17 19:24:22.628 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:24:22.628 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:24:22.668 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:22.668 -07 000000486 INF: FPGA: Recv YRDPOS 136272
17-03-17 19:24:22.678 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:24:22.678 -07 000000462 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:22.678 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:24:22.678 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.838 mm, average velocity = 2.101 mm/sec
17-03-17 19:24:23.628 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:23.628 -07 000000433 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:24:23.638 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:23.638 -07 000000462 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:23.658 -07 000000462 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:24:23.658 -07 000000462 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:24:23.658 -07 000000462 INF: Y Motor: Moved to 66.5396 after 1436 ms (table move)
17-03-17 19:24:23.658 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137935 mm (DAC = 30132)
17-03-17 19:24:23.658 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:23.658 -07 000000480 INF: FPGA: Recv ZSGSRD 30760
17-03-17 19:24:23.668 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:24:23.668 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:23.668 -07 000000623 INF: FPGA: Recv ZSGSRD 30758
17-03-17 19:24:23.678 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:23.678 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:23.678 -07 000000433 INF: FPGA: Recv ZSGSRD 30762
17-03-17 19:24:23.688 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:23.688 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:23.688 -07 000000424 INF: FPGA: Recv ZSGSRD 30764
17-03-17 19:24:23.698 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:23.698 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:23.698 -07 000000623 INF: FPGA: Recv ZSGSRD 30774
17-03-17 19:24:23.708 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:23.708 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:23.708 -07 000000433 INF: FPGA: Recv ZSGSRD 30763
17-03-17 19:24:23.718 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:23.718 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:23.718 -07 000000476 INF: FPGA: Recv ZSGSRD 30768
17-03-17 19:24:23.728 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:23.728 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:23.728 -07 000000431 INF: FPGA: Recv ZSGSRD 30756
17-03-17 19:24:23.738 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:23.738 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:23.738 -07 000000462 INF: FPGA: Recv ZSGSRD 30757
17-03-17 19:24:23.748 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:23.748 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:23.748 -07 000000623 INF: FPGA: Recv ZSGSRD 30762
17-03-17 19:24:23.758 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:23.758 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:23.758 -07 000000462 INF: FPGA: Recv ZPIEZORD 26738
17-03-17 19:24:23.768 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:23.768 -07 000000541 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.598 V. Piezo Error = -8.9 V.
17-03-17 19:24:23.768 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30762 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30762 (-137.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30756 (-137.1 uncal um), Max = 30774 (-137.2 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:24:23.768 -07 000000541 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30762, posNoise = 12, negNoise = 6
17-03-17 19:24:23.768 -07 000000541 INF: Z Motor: After move to -0.137935, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:23.768 -07 000000541 INF: Z Motor: Settle wait time = 1439 ms, measure time = 105 ms (allowed 150 ms), total time = 1544 ms
17-03-17 19:24:23.768 -07 000000541 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:24:23.818 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1710 ms
17-03-17 19:24:23.818 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:24:23.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:23.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:23.818 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:23.818 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:23.818 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:24:23.818 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:23.818 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:24:23.818 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:24:23.828 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:24:23.828 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:24:23.828 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:24:23.828 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:24:23.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:24:23.878 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:24:24.078 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:24:24.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:24:24.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:24:24.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:24:24.118 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:24:24.118 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 19:24:24.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 276 ms to get response, and 286 ms overall
17-03-17 19:24:24.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:24:24.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:24.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:24:24.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:24:24.218 -07 000000482 INF: Autofocus start
17-03-17 19:24:24.218 -07 000000482 INF: MeasureProfile start
17-03-17 19:24:24.218 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:24.218 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:24.228 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:24:24.228 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:24:24.228 -07 000000482 INF: MeasureProfile done
17-03-17 19:24:24.228 -07 000000482 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:24:24.228 -07 000000482 INF: Autofocus finished
17-03-17 19:24:24.428 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:24:24.428 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:24:24.428 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.137944965915986. ----------
17-03-17 19:24:24.428 -07 000000610 INF: Cycle	25	Tile	9	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:24:24.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28656, sync = True, waitForSettling = True)
17-03-17 19:24:24.438 -07 000000610 INF: Z Motor: Moving to -0.131179 mm, started at -0.137945 mm, distance = 6.77 um
17-03-17 19:24:24.438 -07 000000610 INF: FPGA: Xmit ZDACW 28656\n [Z Motor]
17-03-17 19:24:24.438 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:24:24.448 -07 000000610 INF: FPGA: 'ZDACW 28656' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:24.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:24.448 -07 000000433 INF: FPGA: Recv ZDACR 28656
17-03-17 19:24:24.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:24.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:24:24.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:24.608 -07 000000618 INF: FPGA: Recv ZSGSRD 29712
17-03-17 19:24:24.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:24.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:24.618 -07 000000433 INF: FPGA: Recv ZSGSRD 29708
17-03-17 19:24:24.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:24.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:24.628 -07 000000424 INF: FPGA: Recv ZSGSRD 29708
17-03-17 19:24:24.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:24.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:24.638 -07 000000382 INF: FPGA: Recv ZSGSRD 29706
17-03-17 19:24:24.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:24.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:24.648 -07 000000541 INF: FPGA: Recv ZSGSRD 29713
17-03-17 19:24:24.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:24.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:24.658 -07 000000476 INF: FPGA: Recv ZSGSRD 29717
17-03-17 19:24:24.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:24.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:24.668 -07 000000462 INF: FPGA: Recv ZSGSRD 29714
17-03-17 19:24:24.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:24.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:24.678 -07 000000476 INF: FPGA: Recv ZSGSRD 29711
17-03-17 19:24:24.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:24.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:24.688 -07 000000433 INF: FPGA: Recv ZSGSRD 29710
17-03-17 19:24:24.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:24.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:24.698 -07 000000476 INF: FPGA: Recv ZSGSRD 29711
17-03-17 19:24:24.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:24.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:24.708 -07 000000482 INF: FPGA: Recv ZPIEZORD 25392
17-03-17 19:24:24.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:24.718 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.373 V. Piezo Error = -9.5 V.
17-03-17 19:24:24.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29711 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29711 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29706 (-130.4 uncal um), Max = 29717 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:24:24.718 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29711, posNoise = 6, negNoise = 5
17-03-17 19:24:24.718 -07 000000610 INF: Z Motor: After move to -0.131179, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:24.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:24:24.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:24.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:24.718 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:24.718 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:24.718 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:24:24.718 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:24.718 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:24:24.718 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:24:24.718 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:24:24.718 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:24:24.718 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:24:24.718 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:24:24.728 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:24:24.728 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:24:24.728 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:24:24.728 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:24:24.728 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:24:24.728 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:24:24.738 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:24:24.738 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:24:24.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 28833 150\n [Camera]
17-03-17 19:24:24.938 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:24:25.338 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:24:25.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:24:25.338 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:25.338 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:24:25.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:24:25.338 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:25.338 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:25.338 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:24:25.348 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:25.348 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:24:25.528 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28833 786
17-03-17 19:24:25.678 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:24:25.738 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:24:25.738 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:24:25.738 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:25.738 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:24:25.738 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:24:25.738 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:25.738 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:25.738 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:24:25.748 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:25.748 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:24:25.868 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:24:25.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:24:25.878 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:25.878 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:25.878 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:24:25.878 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:24:25.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:24:25.878 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:25.878 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:25.878 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:24:26.068 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-17 19:24:26.068 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:24:26.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 28833 150' command took 2 ms to send, 1322 ms to get response, and 1329 ms overall
17-03-17 19:24:26.068 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:24:26.068 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.131193118954995. ------
17-03-17 19:24:26.068 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:26.068 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13790 mm
17-03-17 19:24:26.068 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:24:26.078 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:24:26.078 -07 000000462 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 19:24:26.078 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:26.078 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:26.078 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:24:26.078 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30124, sync = True, waitForSettling = False)
17-03-17 19:24:26.078 -07 000000618 INF: Z Motor: Moving to -0.137899 mm, started at -0.131193 mm, distance = -6.71 um
17-03-17 19:24:26.078 -07 000000382 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:24:26.088 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:24:26.088 -07 000000462 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:26.088 -07 000000462 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:24:26.088 -07 000000462 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:24:26.088 -07 000000618 INF: FPGA: Xmit ZDACW 30124\n [Z Motor]
17-03-17 19:24:26.088 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:24:26.098 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:24:26.098 -07 000000618 INF: FPGA: 'ZDACW 30124' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:24:26.108 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:24:26.118 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:26.118 -07 000000424 INF: FPGA: Recv ZDACR 30124
17-03-17 19:24:26.128 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:24:26.128 -07 000000618 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 19:24:26.268 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:24:26.268 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:24:26.268 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:26.268 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:24:26.268 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:24:26.268 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:26.268 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:24:26.278 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:24:26.278 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:24:26.278 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:24:26.298 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:24:26.298 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 19:24:26.478 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 19:24:26.478 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 19:24:26.518 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:26.518 -07 000000623 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:24:26.528 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:24:26.528 -07 000000462 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:26.528 -07 000000462 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 19:24:26.528 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 19:24:26.688 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:24:26.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:24:27.258 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.005817,
17-03-17 19:24:27.478 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:27.478 -07 000000431 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:24:27.488 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:27.488 -07 000000462 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:27.508 -07 000000462 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:24:27.508 -07 000000462 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:24:27.508 -07 000000462 INF: Y Motor: Moved to 67.3721 after 1429 ms (table move)
17-03-17 19:24:27.508 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137899 mm (DAC = 30124)
17-03-17 19:24:27.508 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:27.508 -07 000000482 INF: FPGA: Recv ZSGSRD 30754
17-03-17 19:24:27.518 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:24:27.518 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:27.518 -07 000000476 INF: FPGA: Recv ZSGSRD 30751
17-03-17 19:24:27.528 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:27.528 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:27.528 -07 000000424 INF: FPGA: Recv ZSGSRD 30759
17-03-17 19:24:27.538 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:27.538 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:27.538 -07 000000482 INF: FPGA: Recv ZSGSRD 30759
17-03-17 19:24:27.548 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:27.548 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:27.548 -07 000000618 INF: FPGA: Recv ZSGSRD 30757
17-03-17 19:24:27.558 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:27.558 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:27.558 -07 000000424 INF: FPGA: Recv ZSGSRD 30757
17-03-17 19:24:27.568 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:27.568 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:27.568 -07 000000618 INF: FPGA: Recv ZSGSRD 30755
17-03-17 19:24:27.578 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:27.578 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:27.578 -07 000000424 INF: FPGA: Recv ZSGSRD 30756
17-03-17 19:24:27.588 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:27.588 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:27.588 -07 000000476 INF: FPGA: Recv ZSGSRD 30748
17-03-17 19:24:27.598 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:27.598 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:27.598 -07 000000618 INF: FPGA: Recv ZSGSRD 30749
17-03-17 19:24:27.608 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:27.608 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:27.608 -07 000000482 INF: FPGA: Recv ZPIEZORD 26749
17-03-17 19:24:27.618 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:27.618 -07 000000541 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.597 V. Piezo Error = -8.8 V.
17-03-17 19:24:27.618 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30754 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30756 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30748 (-137.1 uncal um), Max = 30759 (-137.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:24:27.618 -07 000000541 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30754, posNoise = 5, negNoise = 6
17-03-17 19:24:27.618 -07 000000541 INF: Z Motor: After move to -0.137899, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:27.618 -07 000000541 INF: Z Motor: Settle wait time = 1431 ms, measure time = 106 ms (allowed 150 ms), total time = 1537 ms
17-03-17 19:24:27.618 -07 000000541 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:24:27.668 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 19:24:27.668 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:24:27.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:27.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:27.668 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:27.668 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:24:27.668 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:27.668 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:27.668 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:24:27.668 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:27.678 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:24:27.678 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:24:27.678 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:24:27.678 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:24:27.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:24:27.728 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:24:27.928 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:24:27.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:24:27.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:24:27.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2661347256, 0x0, 559484976) start.
17-03-17 19:24:27.968 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:24:27.968 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 19:24:27.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:24:28.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2661347256, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:24:28.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:28.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:24:28.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:24:28.068 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:28.068 -07 000000012 INF: Autofocus start
17-03-17 19:24:28.068 -07 000000012 INF: MeasureProfile start
17-03-17 19:24:28.068 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:28.078 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:24:28.078 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:24:28.078 -07 000000012 INF: MeasureProfile done
17-03-17 19:24:28.088 -07 000000012 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:24:28.088 -07 000000012 INF: Autofocus finished
17-03-17 19:24:28.278 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:24:28.278 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:24:28.278 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137893572218851. ----------
17-03-17 19:24:28.278 -07 000000610 INF: Cycle	25	Tile	10	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:24:28.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28649, sync = True, waitForSettling = True)
17-03-17 19:24:28.288 -07 000000610 INF: Z Motor: Moving to -0.131147 mm, started at -0.137894 mm, distance = 6.75 um
17-03-17 19:24:28.288 -07 000000610 INF: FPGA: Xmit ZDACW 28649\n [Z Motor]
17-03-17 19:24:28.288 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:24:28.298 -07 000000610 INF: FPGA: 'ZDACW 28649' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:24:28.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:28.298 -07 000000012 INF: FPGA: Recv ZDACR 28649
17-03-17 19:24:28.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:28.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:24:28.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:28.458 -07 000000424 INF: FPGA: Recv ZSGSRD 29700
17-03-17 19:24:28.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:28.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:28.468 -07 000000476 INF: FPGA: Recv ZSGSRD 29706
17-03-17 19:24:28.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:28.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:28.478 -07 000000480 INF: FPGA: Recv ZSGSRD 29703
17-03-17 19:24:28.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:28.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:28.488 -07 000000482 INF: FPGA: Recv ZSGSRD 29702
17-03-17 19:24:28.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:28.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:28.498 -07 000000541 INF: FPGA: Recv ZSGSRD 29702
17-03-17 19:24:28.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:28.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:28.508 -07 000000480 INF: FPGA: Recv ZSGSRD 29710
17-03-17 19:24:28.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:28.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:28.518 -07 000000541 INF: FPGA: Recv ZSGSRD 29700
17-03-17 19:24:28.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:28.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:28.528 -07 000000431 INF: FPGA: Recv ZSGSRD 29702
17-03-17 19:24:28.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:28.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:28.538 -07 000000462 INF: FPGA: Recv ZSGSRD 29708
17-03-17 19:24:28.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:28.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:28.548 -07 000000623 INF: FPGA: Recv ZSGSRD 29704
17-03-17 19:24:28.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:28.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:28.568 -07 000000482 INF: FPGA: Recv ZPIEZORD 25373
17-03-17 19:24:28.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:24:28.578 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -9.5 V.
17-03-17 19:24:28.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29704 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29702 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29700 (-130.3 uncal um), Max = 29710 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:24:28.578 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29704, posNoise = 6, negNoise = 4
17-03-17 19:24:28.578 -07 000000610 INF: Z Motor: After move to -0.131147, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:28.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 19:24:28.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:28.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:28.578 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:28.578 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:28.578 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:24:28.578 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:28.578 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:24:28.578 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:24:28.578 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:24:28.578 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:28.578 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:24:28.578 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:24:28.588 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:24:28.588 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:24:28.588 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:24:28.588 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:24:28.598 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 19:24:28.598 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:24:28.598 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 19:24:28.598 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:24:28.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 28825 150\n [Camera]
17-03-17 19:24:28.798 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:24:29.208 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:24:29.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:24:29.208 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:29.208 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:29.208 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:24:29.208 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:24:29.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:24:29.208 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:29.208 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:29.208 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:24:29.398 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28825 786
17-03-17 19:24:29.548 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:24:29.608 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:24:29.608 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:24:29.608 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:29.608 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:24:29.608 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:24:29.608 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:29.608 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:24:29.608 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:24:29.608 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:24:29.618 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:24:29.738 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:24:29.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:24:29.738 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:29.738 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:29.738 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:24:29.738 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:24:29.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:24:29.748 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:29.748 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:29.748 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:24:29.928 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:24:29.928 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:24:29.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 28825 150' command took 2 ms to send, 1319 ms to get response, and 1331 ms overall
17-03-17 19:24:29.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:24:29.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.131148149470002. ------
17-03-17 19:24:29.938 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13715 mm
17-03-17 19:24:29.938 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:24:29.938 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:30.048 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:30.048 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 113 ms overall
17-03-17 19:24:30.048 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 29961, sync = True, waitForSettling = False)
17-03-17 19:24:30.048 -07 000000433 INF: Z Motor: Moving to -0.137153 mm, started at -0.131148 mm, distance = -6.00 um
17-03-17 19:24:30.048 -07 000000433 INF: FPGA: Xmit ZDACW 29961\n [Z Motor]
17-03-17 19:24:30.048 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:24:30.058 -07 000000541 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 19:24:30.058 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:24:30.058 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:24:30.058 -07 000000433 INF: FPGA: 'ZDACW 29961' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:24:30.068 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:30.068 -07 000000618 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:24:30.078 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:30.078 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:24:30.078 -07 000000541 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:30.078 -07 000000424 INF: FPGA: Recv ZDACR 29961
17-03-17 19:24:30.078 -07 000000541 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:24:30.078 -07 000000541 INF: Y Motor: Moving 1344 steps-22
17-03-17 19:24:30.088 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:24:30.088 -07 000000433 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 19:24:30.088 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:24:30.138 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:24:30.138 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:24:30.138 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:30.138 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 19:24:30.138 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:24:30.138 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:30.148 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:30.148 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:24:30.148 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:24:30.148 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:24:30.258 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:24:30.258 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 204 ms overall
17-03-17 19:24:30.468 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 19:24:30.468 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 387 ms overall
17-03-17 19:24:30.498 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:30.498 -07 000000480 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:24:30.508 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:24:30.508 -07 000000541 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:30.508 -07 000000541 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:24:30.508 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.841 mm, average velocity = 2.172 mm/sec
17-03-17 19:24:31.458 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:31.458 -07 000000480 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:24:31.468 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:31.468 -07 000000541 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:31.478 -07 000000541 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:24:31.478 -07 000000541 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:24:31.478 -07 000000541 INF: Y Motor: Moved to 68.2051 after 1429 ms (table move)
17-03-17 19:24:31.488 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137153 mm (DAC = 29961)
17-03-17 19:24:31.488 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:31.488 -07 000000476 INF: FPGA: Recv ZSGSRD 30649
17-03-17 19:24:31.498 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:24:31.498 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:31.498 -07 000000433 INF: FPGA: Recv ZSGSRD 30639
17-03-17 19:24:31.508 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:31.508 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:31.508 -07 000000424 INF: FPGA: Recv ZSGSRD 30643
17-03-17 19:24:31.518 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:31.518 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:31.518 -07 000000433 INF: FPGA: Recv ZSGSRD 30631
17-03-17 19:24:31.528 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:31.528 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:31.528 -07 000000424 INF: FPGA: Recv ZSGSRD 30642
17-03-17 19:24:31.538 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:31.538 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:31.538 -07 000000623 INF: FPGA: Recv ZSGSRD 30640
17-03-17 19:24:31.548 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:31.548 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:31.548 -07 000000424 INF: FPGA: Recv ZSGSRD 30635
17-03-17 19:24:31.558 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:31.558 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:31.558 -07 000000433 INF: FPGA: Recv ZSGSRD 30636
17-03-17 19:24:31.568 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:31.568 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:31.568 -07 000000541 INF: FPGA: Recv ZSGSRD 30638
17-03-17 19:24:31.578 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:31.578 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:31.578 -07 000000623 INF: FPGA: Recv ZSGSRD 30643
17-03-17 19:24:31.588 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:31.588 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:31.588 -07 000000424 INF: FPGA: Recv ZPIEZORD 26597
17-03-17 19:24:31.598 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:31.598 -07 000000462 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.572 V. Piezo Error = -8.9 V.
17-03-17 19:24:31.598 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30640 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30640 (-136.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30631 (-136.3 uncal um), Max = 30649 (-136.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:24:31.598 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30640, posNoise = 9, negNoise = 9
17-03-17 19:24:31.598 -07 000000462 INF: Z Motor: After move to -0.137153, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:31.598 -07 000000462 INF: Z Motor: Settle wait time = 1434 ms, measure time = 107 ms (allowed 150 ms), total time = 1541 ms
17-03-17 19:24:31.598 -07 000000462 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:24:31.648 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1705 ms
17-03-17 19:24:31.648 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:24:31.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:31.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:31.648 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:31.648 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:31.648 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:24:31.648 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:31.648 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:31.648 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:24:31.658 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:24:31.658 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:24:31.668 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:24:31.668 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:24:31.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:24:31.688 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:24:31.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:24:31.718 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:24:31.918 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:24:31.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:24:31.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:24:31.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:24:31.958 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:24:31.958 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:24:31.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 19:24:32.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:24:32.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:32.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:24:32.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:24:32.058 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:32.058 -07 000000480 INF: Autofocus start
17-03-17 19:24:32.058 -07 000000480 INF: MeasureProfile start
17-03-17 19:24:32.058 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:32.068 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:24:32.068 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:24:32.068 -07 000000480 INF: MeasureProfile done
17-03-17 19:24:32.068 -07 000000480 INF: X=96  Z correction [um]=0.437849
17-03-17 19:24:32.068 -07 000000480 INF: Autofocus finished
17-03-17 19:24:32.268 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:24:32.268 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 19:24:32.288 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.137161212034691. ----------
17-03-17 19:24:32.298 -07 000000610 INF: Cycle	25	Tile	11	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:24:32.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28569, sync = True, waitForSettling = True)
17-03-17 19:24:32.298 -07 000000610 INF: Z Motor: Moving to -0.130780 mm, started at -0.137161 mm, distance = 6.38 um
17-03-17 19:24:32.308 -07 000000610 INF: FPGA: Xmit ZDACW 28569\n [Z Motor]
17-03-17 19:24:32.308 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:24:32.318 -07 000000610 INF: FPGA: 'ZDACW 28569' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:24:32.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:32.318 -07 000000476 INF: FPGA: Recv ZDACR 28569
17-03-17 19:24:32.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:32.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:24:32.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:32.478 -07 000000626 INF: FPGA: Recv ZSGSRD 29646
17-03-17 19:24:32.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:32.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:32.488 -07 000000462 INF: FPGA: Recv ZSGSRD 29647
17-03-17 19:24:32.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:32.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:32.498 -07 000000476 INF: FPGA: Recv ZSGSRD 29649
17-03-17 19:24:32.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:32.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:32.508 -07 000000626 INF: FPGA: Recv ZSGSRD 29650
17-03-17 19:24:32.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:32.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:32.518 -07 000000462 INF: FPGA: Recv ZSGSRD 29646
17-03-17 19:24:32.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:32.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:32.528 -07 000000480 INF: FPGA: Recv ZSGSRD 29649
17-03-17 19:24:32.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:32.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:32.538 -07 000000626 INF: FPGA: Recv ZSGSRD 29648
17-03-17 19:24:32.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:32.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:32.548 -07 000000462 INF: FPGA: Recv ZSGSRD 29649
17-03-17 19:24:32.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:32.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:32.558 -07 000000618 INF: FPGA: Recv ZSGSRD 29646
17-03-17 19:24:32.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:32.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:32.568 -07 000000462 INF: FPGA: Recv ZSGSRD 29642
17-03-17 19:24:32.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:32.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:32.578 -07 000000424 INF: FPGA: Recv ZPIEZORD 25296
17-03-17 19:24:32.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:32.588 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.359 V. Piezo Error = -9.6 V.
17-03-17 19:24:32.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29647 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29648 (-130.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29642 (-130.0 uncal um), Max = 29650 (-130.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:24:32.588 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29647, posNoise = 3, negNoise = 5
17-03-17 19:24:32.588 -07 000000610 INF: Z Motor: After move to -0.130780, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:32.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 19:24:32.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:32.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:32.588 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:32.588 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:24:32.588 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:32.588 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:32.588 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:24:32.588 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:24:32.588 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:24:32.588 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:24:32.588 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:24:32.588 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:24:32.598 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:24:32.598 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:24:32.598 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:24:32.598 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:24:32.598 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:24:32.598 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:24:32.608 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:24:32.608 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:24:32.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 28746 150\n [Camera]
17-03-17 19:24:32.618 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.026244,
17-03-17 19:24:32.818 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:24:33.218 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:24:33.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:24:33.218 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:33.218 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:33.218 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:24:33.218 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:24:33.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:24:33.218 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:33.228 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:33.228 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:24:33.408 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28746 786
17-03-17 19:24:33.558 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:24:33.598 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:24:33.598 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:24:33.598 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:33.608 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:33.608 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:24:33.608 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:24:33.608 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:24:33.608 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:33.608 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:33.618 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:24:33.748 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:24:33.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:24:33.748 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:33.758 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:24:33.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:24:33.758 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:33.758 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:33.758 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:24:33.758 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:33.758 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:24:33.938 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:24:33.938 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:24:33.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 28746 150' command took 2 ms to send, 1319 ms to get response, and 1336 ms overall
17-03-17 19:24:33.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:24:33.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.130781969377922. ------
17-03-17 19:24:34.068 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13746 mm
17-03-17 19:24:34.068 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:24:34.068 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:24:34.068 -07 000000480 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 19:24:34.068 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30028, sync = True, waitForSettling = False)
17-03-17 19:24:34.068 -07 000000462 INF: Z Motor: Moving to -0.137459 mm, started at -0.130782 mm, distance = -6.68 um
17-03-17 19:24:34.078 -07 000000462 INF: FPGA: Xmit ZDACW 30028\n [Z Motor]
17-03-17 19:24:34.078 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:24:34.088 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:34.088 -07 000000462 INF: FPGA: 'ZDACW 30028' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:24:34.088 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:34.098 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:24:34.098 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:34.098 -07 000000476 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:24:34.108 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 19:24:34.108 -07 000000480 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:34.108 -07 000000480 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:24:34.108 -07 000000480 INF: Y Motor: Moving 1340 steps-15
17-03-17 19:24:34.118 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:34.118 -07 000000476 INF: FPGA: Recv ZDACR 30028
17-03-17 19:24:34.128 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:24:34.128 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 19:24:34.128 -07 000000462 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 19:24:34.138 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:24:34.148 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:24:34.148 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:24:34.148 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:34.148 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:24:34.148 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:24:34.148 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:34.148 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:24:34.148 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:24:34.148 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:24:34.158 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:24:34.328 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:24:34.328 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 19:24:34.508 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 19:24:34.508 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-17 19:24:34.548 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:34.548 -07 000000012 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:24:34.558 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:24:34.558 -07 000000480 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:34.558 -07 000000480 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 19:24:34.558 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 408 ms, distance = 0.838 mm, average velocity = 2.053 mm/sec
17-03-17 19:24:35.508 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:35.508 -07 000000561 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:24:35.518 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:35.518 -07 000000480 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:35.538 -07 000000480 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:24:35.538 -07 000000480 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:24:35.538 -07 000000480 INF: Y Motor: Moved to 69.0273 after 1463 ms (table move)
17-03-17 19:24:35.538 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137459 mm (DAC = 30028)
17-03-17 19:24:35.538 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:35.538 -07 000000433 INF: FPGA: Recv ZSGSRD 30691
17-03-17 19:24:35.548 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:24:35.548 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:35.548 -07 000000480 INF: FPGA: Recv ZSGSRD 30684
17-03-17 19:24:35.558 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:35.558 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:35.558 -07 000000482 INF: FPGA: Recv ZSGSRD 30686
17-03-17 19:24:35.568 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:35.568 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:35.568 -07 000000618 INF: FPGA: Recv ZSGSRD 30692
17-03-17 19:24:35.578 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:35.578 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:35.578 -07 000000482 INF: FPGA: Recv ZSGSRD 30690
17-03-17 19:24:35.588 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:35.588 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:35.588 -07 000000480 INF: FPGA: Recv ZSGSRD 30691
17-03-17 19:24:35.598 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:35.598 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:35.598 -07 000000482 INF: FPGA: Recv ZSGSRD 30685
17-03-17 19:24:35.608 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:35.608 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:35.608 -07 000000433 INF: FPGA: Recv ZSGSRD 30685
17-03-17 19:24:35.618 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:35.618 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:35.618 -07 000000424 INF: FPGA: Recv ZSGSRD 30689
17-03-17 19:24:35.628 -07 000000541 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:35.628 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:35.628 -07 000000431 INF: FPGA: Recv ZSGSRD 30688
17-03-17 19:24:35.638 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:35.638 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:35.638 -07 000000462 INF: FPGA: Recv ZPIEZORD 26663
17-03-17 19:24:35.648 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:35.648 -07 000000541 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.582 V. Piezo Error = -8.9 V.
17-03-17 19:24:35.648 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30688 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30688 (-136.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30684 (-136.6 uncal um), Max = 30692 (-136.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:24:35.648 -07 000000541 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30688, posNoise = 4, negNoise = 4
17-03-17 19:24:35.648 -07 000000541 INF: Z Motor: After move to -0.137459, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:35.648 -07 000000541 INF: Z Motor: Settle wait time = 1466 ms, measure time = 105 ms (allowed 150 ms), total time = 1571 ms
17-03-17 19:24:35.648 -07 000000541 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:24:35.698 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-17 19:24:35.698 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:24:35.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:35.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:35.698 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:24:35.698 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:35.698 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:35.698 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:35.698 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:35.698 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:24:35.708 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:24:35.708 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:24:35.708 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:24:35.708 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:24:35.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:24:35.758 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:24:35.958 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:24:35.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:24:35.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:24:35.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:24:35.998 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:24:35.998 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 19:24:35.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 286 ms overall
17-03-17 19:24:36.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:24:36.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:36.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:24:36.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:24:36.098 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:36.098 -07 000000618 INF: Autofocus start
17-03-17 19:24:36.098 -07 000000618 INF: MeasureProfile start
17-03-17 19:24:36.098 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:36.108 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:24:36.108 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:24:36.108 -07 000000618 INF: MeasureProfile done
17-03-17 19:24:36.108 -07 000000618 INF: X=-21  Z correction [um]=-0.1056272
17-03-17 19:24:36.108 -07 000000618 INF: Autofocus finished
17-03-17 19:24:36.308 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:24:36.308 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:24:36.308 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.137469574217495. ----------
17-03-17 19:24:36.308 -07 000000610 INF: Cycle	25	Tile	12	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:24:36.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28518, sync = True, waitForSettling = True)
17-03-17 19:24:36.318 -07 000000610 INF: Z Motor: Moving to -0.130547 mm, started at -0.137470 mm, distance = 6.92 um
17-03-17 19:24:36.318 -07 000000610 INF: FPGA: Xmit ZDACW 28518\n [Z Motor]
17-03-17 19:24:36.318 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:24:36.328 -07 000000610 INF: FPGA: 'ZDACW 28518' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:36.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:36.328 -07 000000431 INF: FPGA: Recv ZDACR 28518
17-03-17 19:24:36.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:36.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:24:36.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:36.488 -07 000000618 INF: FPGA: Recv ZSGSRD 29606
17-03-17 19:24:36.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:36.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:36.498 -07 000000431 INF: FPGA: Recv ZSGSRD 29611
17-03-17 19:24:36.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:36.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:36.508 -07 000000482 INF: FPGA: Recv ZSGSRD 29620
17-03-17 19:24:36.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:36.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:36.518 -07 000000618 INF: FPGA: Recv ZSGSRD 29609
17-03-17 19:24:36.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:36.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:36.528 -07 000000476 INF: FPGA: Recv ZSGSRD 29611
17-03-17 19:24:36.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:36.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:36.538 -07 000000480 INF: FPGA: Recv ZSGSRD 29610
17-03-17 19:24:36.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:36.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:36.548 -07 000000012 INF: FPGA: Recv ZSGSRD 29615
17-03-17 19:24:36.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:36.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:36.558 -07 000000480 INF: FPGA: Recv ZSGSRD 29614
17-03-17 19:24:36.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:36.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:36.568 -07 000000012 INF: FPGA: Recv ZSGSRD 29608
17-03-17 19:24:36.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:36.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:36.578 -07 000000561 INF: FPGA: Recv ZSGSRD 29619
17-03-17 19:24:36.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:36.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:36.588 -07 000000476 INF: FPGA: Recv ZPIEZORD 25238
17-03-17 19:24:36.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:36.598 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.6 V.
17-03-17 19:24:36.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29612 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29611 (-129.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29606 (-129.7 uncal um), Max = 29620 (-129.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:24:36.598 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29612, posNoise = 8, negNoise = 6
17-03-17 19:24:36.598 -07 000000610 INF: Z Motor: After move to -0.130547, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:36.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:24:36.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:36.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:36.598 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:36.598 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:24:36.598 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:36.598 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:24:36.598 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:24:36.598 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:36.598 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:36.598 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:24:36.598 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:24:36.598 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:24:36.598 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:24:36.598 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:24:36.608 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:24:36.608 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:24:36.618 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 19:24:36.618 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:24:36.618 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 19:24:36.618 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:24:36.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 28695 150\n [Camera]
17-03-17 19:24:36.688 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:24:36.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:24:36.818 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 19:24:37.218 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:24:37.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:24:37.228 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:37.228 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:24:37.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:24:37.228 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:37.228 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:37.228 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:24:37.228 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:37.228 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:24:37.418 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28695 786
17-03-17 19:24:37.568 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:24:37.618 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:24:37.618 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:24:37.618 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:37.618 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 19:24:37.628 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:24:37.628 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:37.628 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:24:37.628 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:24:37.628 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:24:37.638 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:24:37.758 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:24:37.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:24:37.758 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:37.758 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:37.758 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:24:37.758 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:24:37.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:24:37.758 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:37.758 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:37.758 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 19:24:37.948 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-17 19:24:37.948 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:24:37.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 28695 150' command took 2 ms to send, 1326 ms to get response, and 1329 ms overall
17-03-17 19:24:37.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:24:37.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.13055712195296. ------
17-03-17 19:24:37.958 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:37.958 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13695 mm
17-03-17 19:24:37.958 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:24:37.958 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:37.958 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:24:37.958 -07 000000482 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 19:24:37.958 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29917, sync = True, waitForSettling = False)
17-03-17 19:24:37.958 -07 000000480 INF: Z Motor: Moving to -0.136951 mm, started at -0.130557 mm, distance = -6.39 um
17-03-17 19:24:37.968 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:37.968 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:37.968 -07 000000561 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:24:37.978 -07 000000482 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:24:37.978 -07 000000482 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:37.978 -07 000000482 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:24:37.978 -07 000000482 INF: Y Motor: Moving 1352 steps-31
17-03-17 19:24:37.978 -07 000000480 INF: FPGA: Xmit ZDACW 29917\n [Z Motor]
17-03-17 19:24:37.978 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:24:37.988 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:24:37.988 -07 000000480 INF: FPGA: 'ZDACW 29917' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:24:38.008 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:24:38.008 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.007176,
17-03-17 19:24:38.018 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:38.018 -07 000000012 INF: FPGA: Recv ZDACR 29917
17-03-17 19:24:38.028 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 19:24:38.028 -07 000000480 INF: Z Motor: MoveAbsStepped took 65 ms (did NOT wait for settling yet))
17-03-17 19:24:38.158 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 19:24:38.158 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:24:38.158 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:38.158 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:24:38.158 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:24:38.158 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:38.158 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:38.158 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:38.158 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:24:38.168 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:24:38.188 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:24:38.188 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 19:24:38.378 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 19:24:38.378 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-17 19:24:38.418 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:38.418 -07 000000476 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:24:38.428 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:24:38.428 -07 000000482 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:38.428 -07 000000482 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:24:38.428 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.845 mm, average velocity = 2.077 mm/sec
17-03-17 19:24:39.378 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:39.378 -07 000000476 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:24:39.388 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:39.388 -07 000000482 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:39.408 -07 000000482 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:24:39.408 -07 000000482 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:24:39.408 -07 000000482 INF: Y Motor: Moved to 69.8638 after 1448 ms (table move)
17-03-17 19:24:39.408 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136951 mm (DAC = 29917)
17-03-17 19:24:39.408 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:39.408 -07 000000431 INF: FPGA: Recv ZSGSRD 30609
17-03-17 19:24:39.418 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:24:39.418 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:39.418 -07 000000482 INF: FPGA: Recv ZSGSRD 30616
17-03-17 19:24:39.428 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:39.428 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:39.428 -07 000000431 INF: FPGA: Recv ZSGSRD 30608
17-03-17 19:24:39.438 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:39.438 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:39.438 -07 000000433 INF: FPGA: Recv ZSGSRD 30610
17-03-17 19:24:39.448 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:39.448 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:39.448 -07 000000431 INF: FPGA: Recv ZSGSRD 30615
17-03-17 19:24:39.458 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:39.458 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:39.458 -07 000000012 INF: FPGA: Recv ZSGSRD 30610
17-03-17 19:24:39.468 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:39.488 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:39.488 -07 000000561 INF: FPGA: Recv ZSGSRD 30605
17-03-17 19:24:39.498 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:24:39.498 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:39.498 -07 000000476 INF: FPGA: Recv ZSGSRD 30617
17-03-17 19:24:39.508 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:39.528 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:39.528 -07 000000618 INF: FPGA: Recv ZSGSRD 30615
17-03-17 19:24:39.538 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:24:39.538 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:39.538 -07 000000431 INF: FPGA: Recv ZSGSRD 30609
17-03-17 19:24:39.548 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:39.558 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:39.558 -07 000000476 INF: FPGA: Recv ZPIEZORD 26583
17-03-17 19:24:39.568 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:24:39.568 -07 000000462 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.565 V. Piezo Error = -8.9 V.
17-03-17 19:24:39.568 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30611 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30610 (-136.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30605 (-136.1 uncal um), Max = 30617 (-136.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:24:39.568 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30611, posNoise = 6, negNoise = 6
17-03-17 19:24:39.568 -07 000000462 INF: Z Motor: After move to -0.136951, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:39.568 -07 000000462 INF: Z Motor: Settle wait time = 1452 ms, measure time = 154 ms (allowed 150 ms), total time = 1606 ms
17-03-17 19:24:39.568 -07 000000462 INF: Z Motor: Warning: Actual position measuring time = 154 ms, longer than max expected time of 150 ms
17-03-17 19:24:39.568 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 19:24:39.568 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:24:39.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:39.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:39.568 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:39.568 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:39.568 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:24:39.568 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:39.568 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:24:39.568 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:24:39.578 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:24:39.578 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:24:39.588 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:24:39.588 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:24:39.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:24:39.638 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:24:39.838 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:24:39.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:24:39.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:24:39.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 19:24:39.878 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:24:39.878 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 19:24:39.878 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 286 ms overall
17-03-17 19:24:39.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:24:39.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:39.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:24:39.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:24:39.978 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:39.978 -07 000000482 INF: Autofocus start
17-03-17 19:24:39.978 -07 000000482 INF: MeasureProfile start
17-03-17 19:24:39.978 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:39.988 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:24:39.988 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:24:39.988 -07 000000482 INF: MeasureProfile done
17-03-17 19:24:39.988 -07 000000482 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:24:39.988 -07 000000482 INF: Autofocus finished
17-03-17 19:24:40.188 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:24:40.188 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:24:40.188 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.13697490988258. ----------
17-03-17 19:24:40.188 -07 000000610 INF: Cycle	25	Tile	13	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:24:40.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28442, sync = True, waitForSettling = True)
17-03-17 19:24:40.198 -07 000000610 INF: Z Motor: Moving to -0.130199 mm, started at -0.136975 mm, distance = 6.78 um
17-03-17 19:24:40.198 -07 000000610 INF: FPGA: Xmit ZDACW 28442\n [Z Motor]
17-03-17 19:24:40.198 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 19:24:40.208 -07 000000610 INF: FPGA: 'ZDACW 28442' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:24:40.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:40.208 -07 000000626 INF: FPGA: Recv ZDACR 28442
17-03-17 19:24:40.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:40.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:24:40.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:40.368 -07 000000431 INF: FPGA: Recv ZSGSRD 29564
17-03-17 19:24:40.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:40.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:40.378 -07 000000433 INF: FPGA: Recv ZSGSRD 29562
17-03-17 19:24:40.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:40.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:40.388 -07 000000482 INF: FPGA: Recv ZSGSRD 29558
17-03-17 19:24:40.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:40.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:40.398 -07 000000431 INF: FPGA: Recv ZSGSRD 29560
17-03-17 19:24:40.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:40.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:40.408 -07 000000482 INF: FPGA: Recv ZSGSRD 29562
17-03-17 19:24:40.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:40.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:40.418 -07 000000433 INF: FPGA: Recv ZSGSRD 29559
17-03-17 19:24:40.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:40.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:40.428 -07 000000623 INF: FPGA: Recv ZSGSRD 29561
17-03-17 19:24:40.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:40.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:40.438 -07 000000012 INF: FPGA: Recv ZSGSRD 29553
17-03-17 19:24:40.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:40.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:40.448 -07 000000482 INF: FPGA: Recv ZSGSRD 29557
17-03-17 19:24:40.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:40.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:40.458 -07 000000012 INF: FPGA: Recv ZSGSRD 29556
17-03-17 19:24:40.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:40.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:40.468 -07 000000623 INF: FPGA: Recv ZPIEZORD 25198
17-03-17 19:24:40.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:40.478 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.340 V. Piezo Error = -9.6 V.
17-03-17 19:24:40.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29559 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29560 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29553 (-129.4 uncal um), Max = 29564 (-129.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:24:40.478 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29559, posNoise = 5, negNoise = 6
17-03-17 19:24:40.478 -07 000000610 INF: Z Motor: After move to -0.130199, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:40.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:24:40.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:40.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:40.478 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:40.478 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:40.478 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:24:40.478 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:40.478 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:24:40.478 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:24:40.478 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:24:40.478 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:24:40.478 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:24:40.478 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:24:40.488 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:24:40.488 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:24:40.488 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:24:40.488 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:24:40.498 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:24:40.498 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:24:40.498 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:24:40.498 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:24:40.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 28618 150\n [Camera]
17-03-17 19:24:40.698 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:24:41.098 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:24:41.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:24:41.098 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:41.098 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:41.098 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:24:41.098 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:24:41.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:24:41.098 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:41.098 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:41.098 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:24:41.288 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28618 786
17-03-17 19:24:41.438 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:24:41.478 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:24:41.478 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:24:41.478 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:41.478 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:24:41.478 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:24:41.478 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:41.488 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:24:41.488 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:24:41.488 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:24:41.498 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:24:41.638 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:24:41.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:24:41.638 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:41.638 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:41.638 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:24:41.638 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:24:41.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:24:41.638 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:41.638 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:41.638 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:24:41.688 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:24:41.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:24:41.828 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:24:41.828 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:24:41.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 28618 150' command took 2 ms to send, 1322 ms to get response, and 1328 ms overall
17-03-17 19:24:41.828 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:24:41.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.130216638709447. ------
17-03-17 19:24:41.958 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:41.958 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13655 mm
17-03-17 19:24:41.958 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:24:41.968 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:41.968 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:24:41.968 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:24:41.968 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:24:41.968 -07 000000476 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 19:24:41.968 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29828, sync = True, waitForSettling = False)
17-03-17 19:24:41.968 -07 000000480 INF: Z Motor: Moving to -0.136544 mm, started at -0.130217 mm, distance = -6.33 um
17-03-17 19:24:41.978 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:41.978 -07 000000626 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:24:41.988 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:24:41.988 -07 000000476 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:41.988 -07 000000476 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:24:41.988 -07 000000476 INF: Y Motor: Moving 1342 steps-18
17-03-17 19:24:41.988 -07 000000480 INF: FPGA: Xmit ZDACW 29828\n [Z Motor]
17-03-17 19:24:41.988 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:24:41.998 -07 000000480 INF: FPGA: 'ZDACW 29828' command took 1 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:24:41.998 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:41.998 -07 000000618 INF: FPGA: Recv ZDACR 29828
17-03-17 19:24:42.008 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:42.008 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:24:42.008 -07 000000480 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:24:42.028 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 19:24:42.028 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:24:42.028 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:42.028 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 19:24:42.028 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:24:42.028 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:42.028 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:42.038 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:24:42.038 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:24:42.038 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:24:42.168 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:24:42.168 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 19:24:42.378 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 19:24:42.378 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:24:42.418 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:42.418 -07 000000433 INF: FPGA: Recv YRDPOS 144770
17-03-17 19:24:42.428 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:24:42.428 -07 000000476 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:42.428 -07 000000476 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:24:42.428 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 19:24:43.378 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:43.378 -07 000000480 INF: FPGA: Recv YRDPOS 144770
17-03-17 19:24:43.388 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:43.388 -07 000000476 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:43.398 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.988112,
17-03-17 19:24:43.408 -07 000000476 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:24:43.408 -07 000000476 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:24:43.408 -07 000000476 INF: Y Motor: Moved to 70.6885 after 1443 ms (table move)
17-03-17 19:24:43.408 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136544 mm (DAC = 29828)
17-03-17 19:24:43.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:43.438 -07 000000012 INF: FPGA: Recv ZSGSRD 30542
17-03-17 19:24:43.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:24:43.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:43.448 -07 000000476 INF: FPGA: Recv ZSGSRD 30549
17-03-17 19:24:43.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:43.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:43.458 -07 000000012 INF: FPGA: Recv ZSGSRD 30547
17-03-17 19:24:43.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:43.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:43.468 -07 000000476 INF: FPGA: Recv ZSGSRD 30546
17-03-17 19:24:43.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:43.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:43.478 -07 000000618 INF: FPGA: Recv ZSGSRD 30543
17-03-17 19:24:43.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:43.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:43.488 -07 000000424 INF: FPGA: Recv ZSGSRD 30540
17-03-17 19:24:43.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:43.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:43.498 -07 000000541 INF: FPGA: Recv ZSGSRD 30548
17-03-17 19:24:43.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:43.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:43.508 -07 000000618 INF: FPGA: Recv ZSGSRD 30544
17-03-17 19:24:43.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:43.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:43.518 -07 000000424 INF: FPGA: Recv ZSGSRD 30547
17-03-17 19:24:43.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:43.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:43.528 -07 000000462 INF: FPGA: Recv ZSGSRD 30554
17-03-17 19:24:43.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:43.538 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:43.538 -07 000000541 INF: FPGA: Recv ZPIEZORD 26540
17-03-17 19:24:43.548 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:43.548 -07 000000431 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.551 V. Piezo Error = -8.8 V.
17-03-17 19:24:43.548 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30546 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30546 (-135.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30540 (-135.7 uncal um), Max = 30554 (-135.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:24:43.548 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30546, posNoise = 8, negNoise = 6
17-03-17 19:24:43.548 -07 000000431 INF: Z Motor: After move to -0.136544, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:43.548 -07 000000431 INF: Z Motor: Settle wait time = 1446 ms, measure time = 131 ms (allowed 150 ms), total time = 1577 ms
17-03-17 19:24:43.548 -07 000000431 INF: Z Motor: Waiting extra 19 ms after reading position to reach expected total of 150 ms
17-03-17 19:24:43.568 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 19:24:43.568 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:24:43.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:43.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:43.568 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:43.568 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:43.568 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:24:43.568 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:43.568 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:43.568 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:24:43.578 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:24:43.578 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:24:43.578 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:24:43.578 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:24:43.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:24:43.628 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:24:43.828 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:24:43.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:24:43.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:24:43.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:24:43.868 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:24:43.868 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 19:24:43.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 19:24:43.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:24:43.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:43.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:24:43.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:24:43.968 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:43.968 -07 000000012 INF: Autofocus start
17-03-17 19:24:43.968 -07 000000012 INF: MeasureProfile start
17-03-17 19:24:43.968 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:43.978 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:24:43.978 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:24:43.988 -07 000000012 INF: MeasureProfile done
17-03-17 19:24:43.988 -07 000000012 INF: X=43  Z correction [um]=0.1828984
17-03-17 19:24:43.988 -07 000000012 INF: Autofocus finished
17-03-17 19:24:44.178 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:24:44.178 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:24:44.178 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.136557336093365. ----------
17-03-17 19:24:44.178 -07 000000610 INF: Cycle	25	Tile	14	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:24:44.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28381, sync = True, waitForSettling = True)
17-03-17 19:24:44.188 -07 000000610 INF: Z Motor: Moving to -0.129920 mm, started at -0.136557 mm, distance = 6.64 um
17-03-17 19:24:44.188 -07 000000610 INF: FPGA: Xmit ZDACW 28381\n [Z Motor]
17-03-17 19:24:44.188 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:24:44.198 -07 000000610 INF: FPGA: 'ZDACW 28381' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:24:44.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:44.198 -07 000000626 INF: FPGA: Recv ZDACR 28381
17-03-17 19:24:44.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:44.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:24:44.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:44.358 -07 000000623 INF: FPGA: Recv ZSGSRD 29510
17-03-17 19:24:44.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:44.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:44.368 -07 000000462 INF: FPGA: Recv ZSGSRD 29509
17-03-17 19:24:44.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:44.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:44.378 -07 000000626 INF: FPGA: Recv ZSGSRD 29512
17-03-17 19:24:44.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:44.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:44.388 -07 000000462 INF: FPGA: Recv ZSGSRD 29515
17-03-17 19:24:44.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:44.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:44.398 -07 000000433 INF: FPGA: Recv ZSGSRD 29511
17-03-17 19:24:44.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:44.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:44.408 -07 000000462 INF: FPGA: Recv ZSGSRD 29515
17-03-17 19:24:44.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:44.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:44.418 -07 000000433 INF: FPGA: Recv ZSGSRD 29513
17-03-17 19:24:44.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:44.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:44.428 -07 000000626 INF: FPGA: Recv ZSGSRD 29508
17-03-17 19:24:44.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:44.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:44.438 -07 000000433 INF: FPGA: Recv ZSGSRD 29511
17-03-17 19:24:44.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:44.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:44.448 -07 000000623 INF: FPGA: Recv ZSGSRD 29516
17-03-17 19:24:44.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:44.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:44.458 -07 000000433 INF: FPGA: Recv ZPIEZORD 25202
17-03-17 19:24:44.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:44.468 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -9.5 V.
17-03-17 19:24:44.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29512 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29512 (-129.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29508 (-129.1 uncal um), Max = 29516 (-129.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:24:44.468 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29512, posNoise = 4, negNoise = 4
17-03-17 19:24:44.468 -07 000000610 INF: Z Motor: After move to -0.129920, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:44.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:24:44.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:44.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:44.468 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:44.468 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:44.468 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:24:44.468 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:24:44.468 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:24:44.468 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:44.468 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:24:44.468 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:24:44.468 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:44.468 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:24:44.468 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:24:44.468 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:24:44.468 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:24:44.468 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:24:44.488 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 19:24:44.488 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:24:44.488 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 19:24:44.488 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:24:44.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 28558 150\n [Camera]
17-03-17 19:24:44.688 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:24:45.088 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:24:45.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:24:45.088 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:45.088 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:24:45.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:24:45.098 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:45.098 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:45.098 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:24:45.098 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:45.098 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:24:45.278 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28558 786
17-03-17 19:24:45.428 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:24:45.468 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:24:45.468 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:24:45.468 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:45.478 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:45.478 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:24:45.478 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:24:45.478 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:45.478 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:24:45.478 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:45.478 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:24:45.628 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:24:45.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:24:45.628 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:24:45.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:24:45.628 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:45.628 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:45.638 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:45.638 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:24:45.638 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:45.638 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:24:45.818 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-17 19:24:45.818 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:24:45.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 28558 150' command took 2 ms to send, 1323 ms to get response, and 1328 ms overall
17-03-17 19:24:45.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:24:45.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.129914700738784. ------
17-03-17 19:24:45.828 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:45.828 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13657 mm
17-03-17 19:24:45.828 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:24:45.828 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:45.828 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29833, sync = True, waitForSettling = False)
17-03-17 19:24:45.828 -07 000000626 INF: Z Motor: Moving to -0.136567 mm, started at -0.129915 mm, distance = -6.65 um
17-03-17 19:24:45.828 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:24:45.828 -07 000000433 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 19:24:45.838 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:45.838 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:45.838 -07 000000424 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:24:45.848 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:24:45.848 -07 000000433 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:45.958 -07 000000626 INF: FPGA: Xmit ZDACW 29833\n [Z Motor]
17-03-17 19:24:45.958 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:24:45.958 -07 000000433 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:24:45.958 -07 000000433 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:24:45.968 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:24:45.968 -07 000000626 INF: FPGA: 'ZDACW 29833' command took 113 ms to send, 0 ms to get response, and 136 ms overall
17-03-17 19:24:45.978 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:24:45.988 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:45.988 -07 000000561 INF: FPGA: Recv ZDACR 29833
17-03-17 19:24:45.998 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:24:45.998 -07 000000626 INF: Z Motor: MoveAbsStepped took 166 ms (did NOT wait for settling yet))
17-03-17 19:24:46.038 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:24:46.038 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:24:46.038 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:46.038 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:24:46.038 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:24:46.038 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:46.038 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:24:46.038 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 19:24:46.048 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:24:46.058 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 424 ms.
17-03-17 19:24:46.168 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:24:46.168 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 334 ms overall
17-03-17 19:24:46.348 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 19:24:46.348 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-17 19:24:46.388 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:46.388 -07 000000618 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:24:46.398 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:24:46.398 -07 000000433 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:46.398 -07 000000433 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:24:46.398 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.164 mm/sec
17-03-17 19:24:46.688 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:24:46.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:24:47.348 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:47.348 -07 000000618 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:24:47.358 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:47.358 -07 000000433 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:47.378 -07 000000433 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:24:47.378 -07 000000433 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:24:47.378 -07 000000433 INF: Y Motor: Moved to 71.5195 after 1547 ms (table move)
17-03-17 19:24:47.378 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136567 mm (DAC = 29833)
17-03-17 19:24:47.378 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:47.378 -07 000000433 INF: FPGA: Recv ZSGSRD 30544
17-03-17 19:24:47.388 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:24:47.388 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:47.388 -07 000000433 INF: FPGA: Recv ZSGSRD 30538
17-03-17 19:24:47.398 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:47.398 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:47.398 -07 000000424 INF: FPGA: Recv ZSGSRD 30542
17-03-17 19:24:47.408 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:47.408 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:47.408 -07 000000626 INF: FPGA: Recv ZSGSRD 30553
17-03-17 19:24:47.418 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:47.418 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:47.418 -07 000000424 INF: FPGA: Recv ZSGSRD 30550
17-03-17 19:24:47.428 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:47.428 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:47.428 -07 000000626 INF: FPGA: Recv ZSGSRD 30553
17-03-17 19:24:47.438 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:47.438 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:47.438 -07 000000626 INF: FPGA: Recv ZSGSRD 30546
17-03-17 19:24:47.448 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:47.448 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:47.448 -07 000000626 INF: FPGA: Recv ZSGSRD 30548
17-03-17 19:24:47.458 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:47.458 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:47.458 -07 000000626 INF: FPGA: Recv ZSGSRD 30546
17-03-17 19:24:47.468 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:47.468 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:47.468 -07 000000626 INF: FPGA: Recv ZSGSRD 30552
17-03-17 19:24:47.478 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:47.478 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:47.478 -07 000000626 INF: FPGA: Recv ZPIEZORD 26556
17-03-17 19:24:47.488 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:47.488 -07 000000541 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.552 V. Piezo Error = -8.8 V.
17-03-17 19:24:47.488 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30547 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30547 (-135.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30538 (-135.7 uncal um), Max = 30553 (-135.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:24:47.488 -07 000000541 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30547, posNoise = 6, negNoise = 9
17-03-17 19:24:47.488 -07 000000541 INF: Z Motor: After move to -0.136567, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:47.488 -07 000000541 INF: Z Motor: Settle wait time = 1551 ms, measure time = 106 ms (allowed 150 ms), total time = 1657 ms
17-03-17 19:24:47.488 -07 000000541 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:24:47.538 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1709 ms
17-03-17 19:24:47.538 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:24:47.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:47.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:47.538 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:47.538 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:47.538 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:24:47.538 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:47.538 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:47.538 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:24:47.548 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:24:47.548 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:24:47.558 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:24:47.558 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:24:47.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:24:47.608 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:24:47.808 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:24:47.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:24:47.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:24:47.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:24:47.848 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:24:47.848 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 19:24:47.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 19:24:47.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 19:24:47.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:47.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:24:47.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 19:24:47.948 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:47.948 -07 000000626 INF: Autofocus start
17-03-17 19:24:47.948 -07 000000626 INF: MeasureProfile start
17-03-17 19:24:47.948 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:47.958 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:24:47.958 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:24:47.958 -07 000000626 INF: MeasureProfile done
17-03-17 19:24:47.958 -07 000000626 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:24:47.958 -07 000000626 INF: Autofocus finished
17-03-17 19:24:48.158 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:24:48.158 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:24:48.158 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.136563760305507. ----------
17-03-17 19:24:48.158 -07 000000610 INF: Cycle	25	Tile	15	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:24:48.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28340, sync = True, waitForSettling = True)
17-03-17 19:24:48.168 -07 000000610 INF: Z Motor: Moving to -0.129732 mm, started at -0.136564 mm, distance = 6.83 um
17-03-17 19:24:48.168 -07 000000610 INF: FPGA: Xmit ZDACW 28340\n [Z Motor]
17-03-17 19:24:48.168 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:24:48.178 -07 000000610 INF: FPGA: 'ZDACW 28340' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:24:48.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:48.178 -07 000000462 INF: FPGA: Recv ZDACR 28340
17-03-17 19:24:48.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:48.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:24:48.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:48.338 -07 000000462 INF: FPGA: Recv ZSGSRD 29483
17-03-17 19:24:48.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:48.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:48.348 -07 000000462 INF: FPGA: Recv ZSGSRD 29486
17-03-17 19:24:48.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:48.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:48.358 -07 000000462 INF: FPGA: Recv ZSGSRD 29485
17-03-17 19:24:48.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:48.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:48.368 -07 000000462 INF: FPGA: Recv ZSGSRD 29479
17-03-17 19:24:48.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:48.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:48.378 -07 000000462 INF: FPGA: Recv ZSGSRD 29483
17-03-17 19:24:48.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:48.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:48.388 -07 000000462 INF: FPGA: Recv ZSGSRD 29483
17-03-17 19:24:48.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:48.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:48.398 -07 000000462 INF: FPGA: Recv ZSGSRD 29483
17-03-17 19:24:48.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:48.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:48.408 -07 000000424 INF: FPGA: Recv ZSGSRD 29487
17-03-17 19:24:48.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:48.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:48.418 -07 000000424 INF: FPGA: Recv ZSGSRD 29484
17-03-17 19:24:48.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:48.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:48.428 -07 000000424 INF: FPGA: Recv ZSGSRD 29485
17-03-17 19:24:48.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:48.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:48.448 -07 000000626 INF: FPGA: Recv ZPIEZORD 25194
17-03-17 19:24:48.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:24:48.458 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.324 V. Piezo Error = -9.4 V.
17-03-17 19:24:48.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29484 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29484 (-129.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29479 (-128.9 uncal um), Max = 29487 (-129.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:24:48.458 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29484, posNoise = 3, negNoise = 5
17-03-17 19:24:48.458 -07 000000610 INF: Z Motor: After move to -0.129732, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:48.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 19:24:48.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:48.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:48.458 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:48.458 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:24:48.458 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:48.458 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:48.458 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:24:48.458 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:24:48.458 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:48.458 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:24:48.458 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:24:48.458 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:24:48.458 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:24:48.458 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:24:48.458 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:24:48.458 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:24:48.468 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:24:48.468 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:24:48.468 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:24:48.468 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:24:48.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 28517 150\n [Camera]
17-03-17 19:24:48.678 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:24:48.758 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.98264,
17-03-17 19:24:49.078 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:24:49.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:24:49.078 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:49.078 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:24:49.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:24:49.078 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:49.078 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:49.078 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:24:49.088 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:49.088 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:24:49.268 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28517 788
17-03-17 19:24:49.418 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:24:49.458 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:24:49.458 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:24:49.458 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:49.458 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:24:49.458 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:24:49.458 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:49.468 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:24:49.468 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:24:49.468 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:24:49.468 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:24:49.608 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:24:49.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:24:49.618 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:49.618 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:49.618 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:24:49.618 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:24:49.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:24:49.618 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:49.618 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:49.618 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:24:49.808 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:24:49.808 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:24:49.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 28517 150' command took 2 ms to send, 1321 ms to get response, and 1329 ms overall
17-03-17 19:24:49.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:24:49.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.129734822798815. ------
17-03-17 19:24:49.808 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:49.808 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13575 mm
17-03-17 19:24:49.808 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:24:49.818 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:24:49.818 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29654, sync = True, waitForSettling = False)
17-03-17 19:24:49.818 -07 000000424 INF: Z Motor: Moving to -0.135747 mm, started at -0.129735 mm, distance = -6.01 um
17-03-17 19:24:49.818 -07 000000626 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 19:24:49.818 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:49.818 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 19:24:49.818 -07 000000424 INF: FPGA: Xmit ZDACW 29654\n [Z Motor]
17-03-17 19:24:49.818 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:24:49.828 -07 000000424 INF: FPGA: 'ZDACW 29654' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:49.828 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:24:49.838 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:49.838 -07 000000431 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:24:49.848 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:49.848 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:24:49.848 -07 000000626 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:49.848 -07 000000626 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:24:49.848 -07 000000626 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:24:49.848 -07 000000462 INF: FPGA: Recv ZDACR 29654
17-03-17 19:24:49.858 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:24:49.858 -07 000000424 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 19:24:49.858 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:24:49.998 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:24:49.998 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:24:49.998 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:50.008 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:50.008 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 19:24:50.008 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:24:50.008 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:50.008 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:24:50.008 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:24:50.008 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:24:50.028 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:24:50.028 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 19:24:50.228 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 19:24:50.228 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:24:50.278 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:50.278 -07 000000424 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:24:50.288 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:24:50.288 -07 000000626 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:50.288 -07 000000626 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:24:50.288 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.178 mm/sec
17-03-17 19:24:51.238 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:51.238 -07 000000476 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:24:51.248 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:51.248 -07 000000626 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:51.268 -07 000000626 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:24:51.268 -07 000000626 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:24:51.268 -07 000000626 INF: Y Motor: Moved to 72.3496 after 1452 ms (table move)
17-03-17 19:24:51.268 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135747 mm (DAC = 29654)
17-03-17 19:24:51.268 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:51.278 -07 000000431 INF: FPGA: Recv ZSGSRD 30427
17-03-17 19:24:51.278 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:24:51.278 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:51.278 -07 000000012 INF: FPGA: Recv ZSGSRD 30423
17-03-17 19:24:51.288 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:51.288 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:51.288 -07 000000476 INF: FPGA: Recv ZSGSRD 30421
17-03-17 19:24:51.298 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:51.298 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:51.298 -07 000000012 INF: FPGA: Recv ZSGSRD 30430
17-03-17 19:24:51.308 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:51.308 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:51.308 -07 000000476 INF: FPGA: Recv ZSGSRD 30418
17-03-17 19:24:51.318 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:51.318 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:51.318 -07 000000623 INF: FPGA: Recv ZSGSRD 30418
17-03-17 19:24:51.328 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:51.328 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:51.328 -07 000000626 INF: FPGA: Recv ZSGSRD 30422
17-03-17 19:24:51.338 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:51.338 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:51.338 -07 000000561 INF: FPGA: Recv ZSGSRD 30418
17-03-17 19:24:51.348 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:51.348 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:51.348 -07 000000626 INF: FPGA: Recv ZSGSRD 30423
17-03-17 19:24:51.358 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:51.358 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:51.358 -07 000000012 INF: FPGA: Recv ZSGSRD 30418
17-03-17 19:24:51.368 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:51.368 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:51.368 -07 000000626 INF: FPGA: Recv ZPIEZORD 26430
17-03-17 19:24:51.378 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:51.378 -07 000000618 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.525 V. Piezo Error = -8.8 V.
17-03-17 19:24:51.378 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30422 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30422 (-135.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30418 (-134.9 uncal um), Max = 30430 (-135.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:24:51.378 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30422, posNoise = 8, negNoise = 4
17-03-17 19:24:51.378 -07 000000618 INF: Z Motor: After move to -0.135747, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:51.378 -07 000000618 INF: Z Motor: Settle wait time = 1456 ms, measure time = 104 ms (allowed 150 ms), total time = 1560 ms
17-03-17 19:24:51.378 -07 000000618 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:24:51.428 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-17 19:24:51.428 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:24:51.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:51.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:51.428 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:51.428 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:51.428 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:24:51.428 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:51.428 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:24:51.428 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:24:51.438 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:24:51.438 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:24:51.438 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:24:51.438 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:24:51.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:24:51.488 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:24:51.688 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:24:51.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:24:51.688 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:24:51.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:24:51.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:24:51.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2661347256, 0x0, 559484976) start.
17-03-17 19:24:51.728 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:24:51.728 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 19:24:51.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:24:51.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2661347256, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:24:51.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:51.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:24:51.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 19:24:51.828 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:51.828 -07 000000561 INF: Autofocus start
17-03-17 19:24:51.828 -07 000000561 INF: MeasureProfile start
17-03-17 19:24:51.828 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:51.838 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:24:51.838 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:24:51.838 -07 000000561 INF: MeasureProfile done
17-03-17 19:24:51.838 -07 000000561 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 19:24:51.838 -07 000000561 INF: Autofocus finished
17-03-17 19:24:52.038 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:24:52.038 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:24:52.038 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135760733787787. ----------
17-03-17 19:24:52.038 -07 000000610 INF: Cycle	25	Tile	16	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:24:52.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28132, sync = True, waitForSettling = True)
17-03-17 19:24:52.048 -07 000000610 INF: Z Motor: Moving to -0.128780 mm, started at -0.135761 mm, distance = 6.98 um
17-03-17 19:24:52.048 -07 000000610 INF: FPGA: Xmit ZDACW 28132\n [Z Motor]
17-03-17 19:24:52.048 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:24:52.058 -07 000000610 INF: FPGA: 'ZDACW 28132' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:24:52.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:52.058 -07 000000623 INF: FPGA: Recv ZDACR 28132
17-03-17 19:24:52.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:52.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:24:52.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:52.218 -07 000000476 INF: FPGA: Recv ZSGSRD 29340
17-03-17 19:24:52.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:52.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:52.228 -07 000000476 INF: FPGA: Recv ZSGSRD 29338
17-03-17 19:24:52.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:52.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:52.238 -07 000000476 INF: FPGA: Recv ZSGSRD 29336
17-03-17 19:24:52.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:52.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:52.248 -07 000000476 INF: FPGA: Recv ZSGSRD 29334
17-03-17 19:24:52.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:52.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:52.258 -07 000000476 INF: FPGA: Recv ZSGSRD 29338
17-03-17 19:24:52.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:52.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:52.268 -07 000000424 INF: FPGA: Recv ZSGSRD 29341
17-03-17 19:24:52.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:52.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:52.278 -07 000000476 INF: FPGA: Recv ZSGSRD 29330
17-03-17 19:24:52.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:52.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:52.288 -07 000000476 INF: FPGA: Recv ZSGSRD 29336
17-03-17 19:24:52.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:52.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:52.298 -07 000000623 INF: FPGA: Recv ZSGSRD 29333
17-03-17 19:24:52.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:52.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:52.308 -07 000000623 INF: FPGA: Recv ZSGSRD 29343
17-03-17 19:24:52.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:52.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:52.318 -07 000000623 INF: FPGA: Recv ZPIEZORD 24992
17-03-17 19:24:52.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:52.328 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.293 V. Piezo Error = -9.5 V.
17-03-17 19:24:52.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29337 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29337 (-128.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29330 (-128.0 uncal um), Max = 29343 (-128.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:24:52.328 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29337, posNoise = 6, negNoise = 7
17-03-17 19:24:52.328 -07 000000610 INF: Z Motor: After move to -0.128780, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:52.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:24:52.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:52.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:52.328 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:52.328 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:52.328 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:24:52.328 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:24:52.328 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:24:52.328 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:52.328 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:24:52.328 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:24:52.328 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:52.328 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:24:52.338 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:24:52.338 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:24:52.338 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:24:52.338 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:24:52.348 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:24:52.348 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:24:52.348 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:24:52.348 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:24:52.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 28309 150\n [Camera]
17-03-17 19:24:52.558 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:24:52.958 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:24:52.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:24:52.958 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:52.958 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:52.958 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:24:52.958 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:24:52.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:24:52.958 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:52.958 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:52.958 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:24:53.148 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28309 786
17-03-17 19:24:53.298 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:24:53.348 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:24:53.348 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:24:53.348 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:53.348 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:53.348 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:24:53.348 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:24:53.348 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:53.358 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:53.358 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:24:53.358 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:24:53.488 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:24:53.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:24:53.488 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:53.488 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:53.488 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:24:53.498 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:24:53.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:24:53.498 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:53.498 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:53.498 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:24:53.678 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-17 19:24:53.678 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:24:53.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 28309 150' command took 2 ms to send, 1319 ms to get response, and 1328 ms overall
17-03-17 19:24:53.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:24:53.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128790463613976. ------
17-03-17 19:24:53.688 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:53.688 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13535 mm
17-03-17 19:24:53.688 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:24:53.688 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:24:53.688 -07 000000626 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 19:24:53.688 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:53.808 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-17 19:24:53.808 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29567, sync = True, waitForSettling = False)
17-03-17 19:24:53.808 -07 000000424 INF: Z Motor: Moving to -0.135349 mm, started at -0.128790 mm, distance = -6.56 um
17-03-17 19:24:53.818 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:24:53.828 -07 000000424 INF: FPGA: Xmit ZDACW 29567\n [Z Motor]
17-03-17 19:24:53.828 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 19:24:53.838 -07 000000424 INF: FPGA: 'ZDACW 29567' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:24:53.838 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:53.838 -07 000000561 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:24:53.848 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 152 ms overall
17-03-17 19:24:53.848 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:53.848 -07 000000626 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:53.848 -07 000000012 INF: FPGA: Recv ZDACR 29567
17-03-17 19:24:53.848 -07 000000626 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:24:53.848 -07 000000626 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:24:53.858 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:24:53.858 -07 000000424 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 19:24:53.858 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:24:53.888 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:24:53.888 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:24:53.888 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:53.888 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 19:24:53.888 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:24:53.888 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:53.898 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:24:53.898 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:24:53.898 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:24:53.908 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:24:54.018 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:24:54.018 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 19:24:54.128 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.988112,
17-03-17 19:24:54.228 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:24:54.228 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 19:24:54.268 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:54.268 -07 000000424 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:24:54.278 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:24:54.278 -07 000000626 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:54.278 -07 000000626 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 19:24:54.278 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.843 mm, average velocity = 2.207 mm/sec
17-03-17 19:24:55.228 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:55.228 -07 000000618 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:24:55.238 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:55.238 -07 000000626 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:55.258 -07 000000626 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:24:55.268 -07 000000626 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:24:55.268 -07 000000626 INF: Y Motor: Moved to 73.1763 after 1580 ms (table move)
17-03-17 19:24:55.278 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135349 mm (DAC = 29567)
17-03-17 19:24:55.288 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:55.288 -07 000000626 INF: FPGA: Recv ZSGSRD 30366
17-03-17 19:24:55.298 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:24:55.298 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:55.298 -07 000000480 INF: FPGA: Recv ZSGSRD 30363
17-03-17 19:24:55.308 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:55.308 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:55.308 -07 000000431 INF: FPGA: Recv ZSGSRD 30361
17-03-17 19:24:55.318 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:55.318 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:55.318 -07 000000480 INF: FPGA: Recv ZSGSRD 30362
17-03-17 19:24:55.328 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:55.328 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:55.328 -07 000000431 INF: FPGA: Recv ZSGSRD 30360
17-03-17 19:24:55.338 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:55.338 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:55.338 -07 000000462 INF: FPGA: Recv ZSGSRD 30356
17-03-17 19:24:55.348 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:55.348 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:55.348 -07 000000626 INF: FPGA: Recv ZSGSRD 30356
17-03-17 19:24:55.358 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:55.358 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:55.358 -07 000000480 INF: FPGA: Recv ZSGSRD 30359
17-03-17 19:24:55.368 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:55.368 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:55.368 -07 000000431 INF: FPGA: Recv ZSGSRD 30365
17-03-17 19:24:55.378 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:55.378 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:55.378 -07 000000626 INF: FPGA: Recv ZSGSRD 30363
17-03-17 19:24:55.388 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:55.388 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:55.388 -07 000000462 INF: FPGA: Recv ZPIEZORD 26329
17-03-17 19:24:55.398 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:55.398 -07 000000623 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.512 V. Piezo Error = -8.9 V.
17-03-17 19:24:55.398 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30361 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30362 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30356 (-134.5 uncal um), Max = 30366 (-134.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:24:55.398 -07 000000623 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30361, posNoise = 5, negNoise = 5
17-03-17 19:24:55.398 -07 000000623 INF: Z Motor: After move to -0.135349, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:55.398 -07 000000623 INF: Z Motor: Settle wait time = 1469 ms, measure time = 120 ms (allowed 150 ms), total time = 1589 ms
17-03-17 19:24:55.398 -07 000000623 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-17 19:24:55.428 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1735 ms
17-03-17 19:24:55.428 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:24:55.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:55.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:55.428 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:55.428 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:24:55.428 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:55.428 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:55.428 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:24:55.428 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:24:55.438 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:24:55.438 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:24:55.448 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:24:55.448 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:24:55.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:24:55.498 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:24:55.698 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:24:55.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:24:55.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:24:55.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:24:55.738 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:24:55.738 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 19:24:55.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 19:24:55.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 19:24:55.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:55.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:24:55.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 19:24:55.838 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:55.838 -07 000000480 INF: Autofocus start
17-03-17 19:24:55.838 -07 000000480 INF: MeasureProfile start
17-03-17 19:24:55.838 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:55.848 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:24:55.848 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:24:55.858 -07 000000480 INF: MeasureProfile done
17-03-17 19:24:55.858 -07 000000480 INF: X=10  Z correction [um]=0.02415557
17-03-17 19:24:55.858 -07 000000480 INF: Autofocus finished
17-03-17 19:24:56.048 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:24:56.048 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:24:56.048 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135368856847139. ----------
17-03-17 19:24:56.058 -07 000000610 INF: Cycle	25	Tile	17	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:24:56.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28085, sync = True, waitForSettling = True)
17-03-17 19:24:56.058 -07 000000610 INF: Z Motor: Moving to -0.128565 mm, started at -0.135369 mm, distance = 6.80 um
17-03-17 19:24:56.058 -07 000000610 INF: FPGA: Xmit ZDACW 28085\n [Z Motor]
17-03-17 19:24:56.058 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:24:56.068 -07 000000610 INF: FPGA: 'ZDACW 28085' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:24:56.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:56.068 -07 000000431 INF: FPGA: Recv ZDACR 28085
17-03-17 19:24:56.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:56.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:24:56.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:56.228 -07 000000482 INF: FPGA: Recv ZSGSRD 29305
17-03-17 19:24:56.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:56.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:56.238 -07 000000561 INF: FPGA: Recv ZSGSRD 29306
17-03-17 19:24:56.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:56.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:56.248 -07 000000623 INF: FPGA: Recv ZSGSRD 29304
17-03-17 19:24:56.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:56.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:56.258 -07 000000626 INF: FPGA: Recv ZSGSRD 29301
17-03-17 19:24:56.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:56.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:56.268 -07 000000623 INF: FPGA: Recv ZSGSRD 29302
17-03-17 19:24:56.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:56.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:56.278 -07 000000618 INF: FPGA: Recv ZSGSRD 29301
17-03-17 19:24:56.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:56.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:56.288 -07 000000431 INF: FPGA: Recv ZSGSRD 29300
17-03-17 19:24:56.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:56.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:56.298 -07 000000618 INF: FPGA: Recv ZSGSRD 29303
17-03-17 19:24:56.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:56.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:56.308 -07 000000431 INF: FPGA: Recv ZSGSRD 29301
17-03-17 19:24:56.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:56.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:56.318 -07 000000561 INF: FPGA: Recv ZSGSRD 29304
17-03-17 19:24:56.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:56.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:56.328 -07 000000482 INF: FPGA: Recv ZPIEZORD 24969
17-03-17 19:24:56.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:56.338 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.285 V. Piezo Error = -9.5 V.
17-03-17 19:24:56.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29303 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29302 (-127.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29300 (-127.8 uncal um), Max = 29306 (-127.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:24:56.338 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29303, posNoise = 3, negNoise = 3
17-03-17 19:24:56.338 -07 000000610 INF: Z Motor: After move to -0.128565, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:56.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:24:56.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:56.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:56.338 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:56.338 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:56.338 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:24:56.338 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:56.338 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:24:56.338 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:24:56.338 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:24:56.338 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:24:56.338 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:24:56.338 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:24:56.338 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:24:56.338 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:24:56.348 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:24:56.348 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:24:56.358 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:24:56.358 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:24:56.358 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:24:56.358 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:24:56.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 28261 150\n [Camera]
17-03-17 19:24:56.558 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:24:56.688 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:24:56.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:24:56.958 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:24:56.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:24:56.958 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:56.958 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:24:56.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:24:56.958 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:56.968 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:56.968 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:24:56.968 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:56.968 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:24:57.148 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28261 786
17-03-17 19:24:57.298 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:24:57.338 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:24:57.338 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:24:57.338 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:24:57.338 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:57.338 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:24:57.338 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:57.348 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:24:57.348 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:24:57.348 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:24:57.348 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:24:57.498 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:24:57.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:24:57.498 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:24:57.498 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:24:57.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:24:57.498 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:24:57.498 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:24:57.498 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:24:57.508 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:24:57.618 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:24:57.688 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:24:57.688 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:24:57.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 28261 150' command took 2 ms to send, 1322 ms to get response, and 1329 ms overall
17-03-17 19:24:57.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:24:57.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128572040401156. ------
17-03-17 19:24:57.688 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:57.688 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13500 mm
17-03-17 19:24:57.688 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:24:57.688 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:24:57.688 -07 000000431 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 19:24:57.698 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:57.698 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:57.698 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:24:57.698 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29491, sync = True, waitForSettling = False)
17-03-17 19:24:57.698 -07 000000012 INF: Z Motor: Moving to -0.135001 mm, started at -0.128572 mm, distance = -6.43 um
17-03-17 19:24:57.698 -07 000000462 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:24:57.708 -07 000000012 INF: FPGA: Xmit ZDACW 29491\n [Z Motor]
17-03-17 19:24:57.708 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:57.708 -07 000000431 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:57.708 -07 000000431 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:24:57.708 -07 000000431 INF: Y Motor: Moving 1354 steps-33
17-03-17 19:24:57.708 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 19:24:57.718 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:24:57.718 -07 000000012 INF: FPGA: 'ZDACW 29491' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:24:57.728 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:24:57.738 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:57.738 -07 000000618 INF: FPGA: Recv ZDACR 29491
17-03-17 19:24:57.748 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:24:57.748 -07 000000012 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 19:24:57.898 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:24:57.898 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:24:57.898 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:57.898 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:24:57.898 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:24:57.918 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:24:57.918 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 19:24:58.018 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:24:58.018 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 19:24:58.018 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:58.018 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:24:58.028 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 525 ms.
17-03-17 19:24:58.098 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:24:58.098 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:24:58.128 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:58.128 -07 000000012 INF: FPGA: Recv YRDPOS 151568
17-03-17 19:24:58.138 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:24:58.138 -07 000000431 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:58.138 -07 000000431 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:24:58.138 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 19:24:59.088 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:24:59.088 -07 000000433 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:24:59.098 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:59.098 -07 000000431 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:24:59.108 -07 000000431 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:24:59.108 -07 000000431 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:24:59.108 -07 000000431 INF: Y Motor: Moved to 74.0083 after 1416 ms (table move)
17-03-17 19:24:59.108 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135001 mm (DAC = 29491)
17-03-17 19:24:59.108 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:59.118 -07 000000462 INF: FPGA: Recv ZSGSRD 30303
17-03-17 19:24:59.128 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:24:59.128 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:59.128 -07 000000623 INF: FPGA: Recv ZSGSRD 30303
17-03-17 19:24:59.138 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:59.138 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:59.138 -07 000000424 INF: FPGA: Recv ZSGSRD 30306
17-03-17 19:24:59.148 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:59.148 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:59.148 -07 000000623 INF: FPGA: Recv ZSGSRD 30309
17-03-17 19:24:59.158 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:59.158 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:59.158 -07 000000424 INF: FPGA: Recv ZSGSRD 30309
17-03-17 19:24:59.168 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:59.178 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:59.178 -07 000000424 INF: FPGA: Recv ZSGSRD 30312
17-03-17 19:24:59.188 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:24:59.188 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:59.188 -07 000000424 INF: FPGA: Recv ZSGSRD 30297
17-03-17 19:24:59.198 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:59.198 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:59.198 -07 000000012 INF: FPGA: Recv ZSGSRD 30299
17-03-17 19:24:59.208 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:59.208 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:59.208 -07 000000012 INF: FPGA: Recv ZSGSRD 30309
17-03-17 19:24:59.218 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:59.218 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:24:59.218 -07 000000012 INF: FPGA: Recv ZSGSRD 30305
17-03-17 19:24:59.228 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:59.228 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:24:59.228 -07 000000541 INF: FPGA: Recv ZPIEZORD 26304
17-03-17 19:24:59.238 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:59.238 -07 000000480 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.500 V. Piezo Error = -8.8 V.
17-03-17 19:24:59.238 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30305 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30306 (-134.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30297 (-134.2 uncal um), Max = 30312 (-134.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:24:59.238 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30305, posNoise = 7, negNoise = 8
17-03-17 19:24:59.238 -07 000000480 INF: Z Motor: After move to -0.135001, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:24:59.238 -07 000000480 INF: Z Motor: Settle wait time = 1418 ms, measure time = 120 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:24:59.238 -07 000000480 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-17 19:24:59.268 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1572 ms
17-03-17 19:24:59.268 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:24:59.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:24:59.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:24:59.268 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:24:59.268 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:24:59.268 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:24:59.268 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:24:59.268 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:24:59.268 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:24:59.278 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:24:59.278 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:24:59.278 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:24:59.278 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:24:59.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:24:59.328 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:24:59.488 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 4.008536,
17-03-17 19:24:59.528 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:24:59.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:24:59.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:24:59.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:24:59.568 -07 000000480 INF: FPGA: Recv @CAMSNAP 283
17-03-17 19:24:59.578 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 19:24:59.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 287 ms overall
17-03-17 19:24:59.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:24:59.648 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:24:59.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:24:59.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:24:59.678 -07 000000541 INF: Autofocus start
17-03-17 19:24:59.678 -07 000000541 INF: MeasureProfile start
17-03-17 19:24:59.678 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:24:59.688 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:24:59.688 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:24:59.688 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:24:59.698 -07 000000541 INF: MeasureProfile done
17-03-17 19:24:59.698 -07 000000541 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:24:59.698 -07 000000541 INF: Autofocus finished
17-03-17 19:24:59.888 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:24:59.888 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:24:59.888 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.135009100967201. ----------
17-03-17 19:24:59.898 -07 000000610 INF: Cycle	25	Tile	18	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:24:59.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27986, sync = True, waitForSettling = True)
17-03-17 19:24:59.898 -07 000000610 INF: Z Motor: Moving to -0.128112 mm, started at -0.135009 mm, distance = 6.90 um
17-03-17 19:24:59.898 -07 000000610 INF: FPGA: Xmit ZDACW 27986\n [Z Motor]
17-03-17 19:24:59.898 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:24:59.908 -07 000000610 INF: FPGA: 'ZDACW 27986' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:24:59.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:24:59.908 -07 000000541 INF: FPGA: Recv ZDACR 27986
17-03-17 19:24:59.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:24:59.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:25:00.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:00.068 -07 000000480 INF: FPGA: Recv ZSGSRD 29232
17-03-17 19:25:00.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:00.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:00.078 -07 000000462 INF: FPGA: Recv ZSGSRD 29235
17-03-17 19:25:00.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:00.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:00.088 -07 000000541 INF: FPGA: Recv ZSGSRD 29234
17-03-17 19:25:00.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:00.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:00.098 -07 000000480 INF: FPGA: Recv ZSGSRD 29236
17-03-17 19:25:00.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:00.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:00.108 -07 000000618 INF: FPGA: Recv ZSGSRD 29236
17-03-17 19:25:00.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:00.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:00.118 -07 000000480 INF: FPGA: Recv ZSGSRD 29230
17-03-17 19:25:00.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:00.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:00.128 -07 000000541 INF: FPGA: Recv ZSGSRD 29237
17-03-17 19:25:00.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:00.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:00.138 -07 000000618 INF: FPGA: Recv ZSGSRD 29238
17-03-17 19:25:00.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:00.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:00.148 -07 000000462 INF: FPGA: Recv ZSGSRD 29233
17-03-17 19:25:00.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:00.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:00.158 -07 000000480 INF: FPGA: Recv ZSGSRD 29229
17-03-17 19:25:00.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:00.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:25:00.168 -07 000000541 INF: FPGA: Recv ZPIEZORD 24850
17-03-17 19:25:00.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:00.178 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.270 V. Piezo Error = -9.6 V.
17-03-17 19:25:00.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29234 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29234 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29229 (-127.3 uncal um), Max = 29238 (-127.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:25:00.178 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29234, posNoise = 4, negNoise = 5
17-03-17 19:25:00.178 -07 000000610 INF: Z Motor: After move to -0.128112, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:25:00.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:25:00.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:25:00.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:25:00.178 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:25:00.178 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:25:00.178 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:25:00.178 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:25:00.178 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:25:00.178 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:25:00.178 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:25:00.178 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:25:00.178 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:25:00.178 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:25:00.188 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:25:00.188 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:25:00.188 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:25:00.188 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:25:00.198 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:25:00.198 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:25:00.198 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:25:00.198 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:25:00.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 28163 150\n [Camera]
17-03-17 19:25:00.398 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:25:00.798 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:25:00.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:25:00.798 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:25:00.798 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:25:00.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:25:00.798 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:25:00.808 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:25:00.808 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:25:00.808 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:25:00.808 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:25:00.988 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28163 786
17-03-17 19:25:01.138 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:25:01.198 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:25:01.198 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:25:01.198 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:25:01.208 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:25:01.208 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:25:01.208 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:25:01.208 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:25:01.208 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:25:01.208 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:25:01.218 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:25:01.338 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:25:01.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:25:01.338 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:25:01.338 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:25:01.338 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:25:01.338 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:25:01.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:25:01.338 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:25:01.338 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:25:01.338 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 19:25:01.528 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1324
17-03-17 19:25:01.528 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:25:01.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 28163 150' command took 2 ms to send, 1325 ms to get response, and 1331 ms overall
17-03-17 19:25:01.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:25:01.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.128128769763375. ------
17-03-17 19:25:01.538 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13447 mm
17-03-17 19:25:01.538 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:25:01.538 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:25:01.538 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:25:01.538 -07 000000541 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 19:25:01.548 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:25:01.728 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 19:25:01.728 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:25:01.728 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:25:01.728 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:25:01.728 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:25:01.728 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:25:01.738 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:25:01.738 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:25:01.738 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:25:01.738 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:25:01.748 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 29375, sync = True, waitForSettling = False)
17-03-17 19:25:01.748 -07 000000482 INF: Z Motor: Moving to -0.134470 mm, started at -0.128129 mm, distance = -6.34 um
17-03-17 19:25:01.748 -07 000000482 INF: FPGA: Xmit ZDACW 29375\n [Z Motor]
17-03-17 19:25:01.748 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:25:01.748 -07 000000561 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:25:01.748 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:25:01.748 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 207 ms to get response, and 212 ms overall
17-03-17 19:25:01.748 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 197 ms to get response, and 210 ms overall
17-03-17 19:25:01.748 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:25:01.748 -07 000000541 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:25:01.748 -07 000000541 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:25:01.748 -07 000000541 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:25:01.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 24. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:25:01.758 -07 000000482 INF: FPGA: 'ZDACW 29375' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:25:01.758 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:25:01.758 -07 000000561 INF: FPGA: Recv ZDACR 29375
17-03-17 19:25:01.768 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:25:01.768 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:01.768 -07 000000482 INF: Z Motor: MoveAbsStepped took 16 ms (did NOT wait for settling yet))
17-03-17 19:25:01.778 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:25:01.968 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:25:01.968 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 213 ms overall
17-03-17 19:25:02.148 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 19:25:02.148 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 19:25:02.168 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:25:02.178 -07 000000561 INF: FPGA: Recv YRDPOS 153256
17-03-17 19:25:02.188 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:25:02.188 -07 000000541 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:25:02.188 -07 000000541 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 19:25:02.188 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.844 mm, average velocity = 2.116 mm/sec
17-03-17 19:25:03.138 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:25:03.138 -07 000000431 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:25:03.148 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:25:03.148 -07 000000541 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:25:03.158 -07 000000541 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:25:03.158 -07 000000541 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:25:03.158 -07 000000541 INF: Y Motor: Moved to 74.8325 after 1617 ms (table move)
17-03-17 19:25:03.158 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134470 mm (DAC = 29375)
17-03-17 19:25:03.158 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:03.168 -07 000000618 INF: FPGA: Recv ZSGSRD 30224
17-03-17 19:25:03.178 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:25:03.178 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:03.178 -07 000000541 INF: FPGA: Recv ZSGSRD 30216
17-03-17 19:25:03.188 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:03.188 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:03.188 -07 000000618 INF: FPGA: Recv ZSGSRD 30216
17-03-17 19:25:03.198 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:03.198 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:03.198 -07 000000431 INF: FPGA: Recv ZSGSRD 30213
17-03-17 19:25:03.208 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:03.208 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:03.208 -07 000000433 INF: FPGA: Recv ZSGSRD 30225
17-03-17 19:25:03.218 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:03.218 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:03.218 -07 000000482 INF: FPGA: Recv ZSGSRD 30228
17-03-17 19:25:03.228 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:03.228 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:03.228 -07 000000541 INF: FPGA: Recv ZSGSRD 30223
17-03-17 19:25:03.238 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:03.238 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:03.238 -07 000000626 INF: FPGA: Recv ZSGSRD 30225
17-03-17 19:25:03.248 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:03.248 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:03.248 -07 000000618 INF: FPGA: Recv ZSGSRD 30225
17-03-17 19:25:03.258 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:03.258 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:03.258 -07 000000541 INF: FPGA: Recv ZSGSRD 30227
17-03-17 19:25:03.268 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:03.268 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:25:03.268 -07 000000482 INF: FPGA: Recv ZPIEZORD 26194
17-03-17 19:25:03.278 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:03.278 -07 000000480 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.482 V. Piezo Error = -8.9 V.
17-03-17 19:25:03.278 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30222 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30224 (-133.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30213 (-133.6 uncal um), Max = 30228 (-133.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:25:03.278 -07 000000480 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30222, posNoise = 6, negNoise = 9
17-03-17 19:25:03.278 -07 000000480 INF: Z Motor: After move to -0.134470, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:25:03.278 -07 000000480 INF: Z Motor: Settle wait time = 1415 ms, measure time = 111 ms (allowed 150 ms), total time = 1526 ms
17-03-17 19:25:03.278 -07 000000480 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 19:25:03.318 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1775 ms
17-03-17 19:25:03.318 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:25:03.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:25:03.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:25:03.318 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:25:03.318 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:25:03.318 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:25:03.318 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:25:03.318 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:25:03.318 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:25:03.328 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:25:03.328 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:25:03.338 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:25:03.338 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:25:03.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:25:03.388 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:25:03.588 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:25:03.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:25:03.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:25:03.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 19:25:03.628 -07 000000480 INF: FPGA: Recv @CAMSNAP 283
17-03-17 19:25:03.628 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 19:25:03.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 287 ms overall
17-03-17 19:25:03.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 19:25:03.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:25:03.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:25:03.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 19:25:03.728 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:25:03.728 -07 000000626 INF: Autofocus start
17-03-17 19:25:03.728 -07 000000626 INF: MeasureProfile start
17-03-17 19:25:03.728 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:25:03.738 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:25:03.738 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:25:03.748 -07 000000626 INF: MeasureProfile done
17-03-17 19:25:03.748 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:25:03.748 -07 000000626 INF: Autofocus finished
17-03-17 19:25:03.938 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:25:03.938 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:25:03.938 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134475891359435. ----------
17-03-17 19:25:03.948 -07 000000610 INF: Cycle	25	Tile	19	Exposure Settings		A	401	G	193	T	193	C	401
17-03-17 19:25:03.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27899, sync = True, waitForSettling = True)
17-03-17 19:25:03.948 -07 000000610 INF: Z Motor: Moving to -0.127713 mm, started at -0.134476 mm, distance = 6.76 um
17-03-17 19:25:03.948 -07 000000610 INF: FPGA: Xmit ZDACW 27899\n [Z Motor]
17-03-17 19:25:03.948 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:25:03.958 -07 000000610 INF: FPGA: 'ZDACW 27899' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:25:03.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:25:03.958 -07 000000541 INF: FPGA: Recv ZDACR 27899
17-03-17 19:25:03.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:03.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:25:04.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:04.118 -07 000000431 INF: FPGA: Recv ZSGSRD 29169
17-03-17 19:25:04.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:25:04.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:04.128 -07 000000012 INF: FPGA: Recv ZSGSRD 29168
17-03-17 19:25:04.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:04.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:04.138 -07 000000618 INF: FPGA: Recv ZSGSRD 29172
17-03-17 19:25:04.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:04.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:04.148 -07 000000561 INF: FPGA: Recv ZSGSRD 29171
17-03-17 19:25:04.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:04.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:04.158 -07 000000431 INF: FPGA: Recv ZSGSRD 29167
17-03-17 19:25:04.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:04.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:04.168 -07 000000626 INF: FPGA: Recv ZSGSRD 29173
17-03-17 19:25:04.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:04.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:04.178 -07 000000431 INF: FPGA: Recv ZSGSRD 29172
17-03-17 19:25:04.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:04.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:04.188 -07 000000626 INF: FPGA: Recv ZSGSRD 29171
17-03-17 19:25:04.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:04.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:04.198 -07 000000482 INF: FPGA: Recv ZSGSRD 29167
17-03-17 19:25:04.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:04.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:25:04.208 -07 000000561 INF: FPGA: Recv ZSGSRD 29171
17-03-17 19:25:04.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:04.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:25:04.218 -07 000000012 INF: FPGA: Recv ZPIEZORD 24843
17-03-17 19:25:04.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:04.228 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.257 V. Piezo Error = -9.5 V.
17-03-17 19:25:04.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29170 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29171 (-127.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29167 (-126.9 uncal um), Max = 29173 (-127.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:25:04.228 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29170, posNoise = 3, negNoise = 3
17-03-17 19:25:04.228 -07 000000610 INF: Z Motor: After move to -0.127713, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:25:04.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:25:04.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:25:04.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:25:04.228 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:25:04.228 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:25:04.228 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:25:04.228 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:25:04.228 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:25:04.228 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:25:04.228 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:25:04.228 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:25:04.228 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:25:04.228 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:25:04.238 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:25:04.238 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:25:04.238 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:25:04.238 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:25:04.248 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:25:04.248 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:25:04.248 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:25:04.248 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:25:04.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 401 401 193 193 28076 150\n [Camera]
17-03-17 19:25:04.448 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:25:04.848 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.975845,
17-03-17 19:25:04.848 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-17 19:25:04.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-17 19:25:04.848 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:25:04.848 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:25:04.848 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:25:04.858 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-17 19:25:04.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-17 19:25:04.858 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:25:04.858 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:25:04.858 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:25:05.038 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28076 786
17-03-17 19:25:05.188 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-17 19:25:05.228 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:25:05.228 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:25:05.228 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:25:05.228 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:25:05.228 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:25:05.228 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:25:05.238 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:25:05.238 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:25:05.238 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:25:05.238 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:25:05.388 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1129
17-03-17 19:25:05.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1129
17-03-17 19:25:05.388 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:25:05.388 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:25:05.388 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:25:05.388 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1129
17-03-17 19:25:05.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1129
17-03-17 19:25:05.388 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:25:05.388 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:25:05.388 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:25:05.578 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:25:05.578 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:25:05.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 401 401 193 193 28076 150' command took 2 ms to send, 1323 ms to get response, and 1328 ms overall
17-03-17 19:25:05.788 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:25:05.788 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:25:05.788 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:25:05.788 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:25:05.788 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:25:05.788 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:25:05.798 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:25:05.798 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:25:05.798 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:25:05.798 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:25:05.798 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:25:05.928 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 137 ms.
17-03-17 19:25:05.928 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:25:05.978 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 19:25:05.988 -07 000000610 INF: Enabling Skipping AutoFocus in the next 4 cycles.
17-03-17 19:25:05.988 -07 000000610 INF: Imaging Cycle 25: ScanTilesCommand Cycle 25 time end. Duration was 159404 ms.
17-03-17 19:25:05.988 -07 000000610 INF: =================== Cycle #25 ===================
17-03-17 19:25:05.988 -07 000000610 INF: ===================  ===================
17-03-17 19:25:05.988 -07 000000541 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:25:05.998 -07 000000561 INF: FPGA: Recv EXLED1ADCR 25
17-03-17 19:25:05.998 -07 000000541 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:25:05.998 -07 000000541 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-17 19:25:05.998 -07 000000541 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 25, FrontChillerTemperature: 3.975845, FrontChillerHeatSinkTemperature: 0.464988, AmbientTemperature: 18.92359, FlowCellCompartmentTemperature: 21.98965, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.72911, GreenLEDSensorTemperature: 26.05563, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-17 19:25:06.008 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.