17-03-17 19:25:06.058 -07 000000610 INF: =================== Cycle #26 ===================
17-03-17 19:25:06.068 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 19:25:06.068 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 19:25:06.068 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:25:06.068 -07 000000618 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:25:06.078 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:25:06.078 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:25:06.078 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 19:25:06.078 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 19:25:06.078 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 19:25:06.188 -07 000000618 INF: FPGA: Recv YMVTO 154378 872
17-03-17 19:25:06.188 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 19:25:06.188 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 19:25:06.188 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 19:25:06.188 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 19:25:06.688 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:25:06.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:25:09.188 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:25:09.188 -07 000000618 INF: FPGA: Recv YRDPOS 154381
17-03-17 19:25:09.198 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:25:09.198 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:25:09.208 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:25:09.208 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 19:25:09.208 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3145 ms
17-03-17 19:25:09.218 -07 000000610 INF: =================== Cycle #26, Flow Cell Temp 60° ===================
17-03-17 19:25:09.218 -07 000000610 INF: =================== Cycle #26, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 19:25:09.218 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 19:25:09.218 -07 000000618 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:25:09.228 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:25:09.228 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:25:09.228 -07 000000541 INF: FPGA: Recv TEC2EN 
17-03-17 19:25:09.238 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:09.238 -07 000000610 INF: =================== Cycle #26, Flow Cell Temp 60° ===================
17-03-17 19:25:09.238 -07 000000610 INF: =================== Cycle #26 ===================
17-03-17 19:25:09.238 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:25:09.238 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:25:09.268 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:25:09.268 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 19:25:09.268 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:25:09.568 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:25:09.588 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:25:09.588 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:25:09.638 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:25:09.658 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:25:09.658 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:25:09.758 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3) ===================
17-03-17 19:25:09.758 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:25:09.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:25:09.788 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:25:09.788 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:25:09.788 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:25:09.918 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:25:09.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:25:10.208 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.994908,
17-03-17 19:25:11.688 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:25:11.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:25:13.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:13.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:25:13.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:13.568 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:25:13.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:14.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:14.018 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:25:14.018 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3) ===================
17-03-17 19:25:14.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:25:14.178 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:25:14.178 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:25:14.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:25:14.338 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:25:14.338 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:25:14.338 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:25:14.468 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:25:14.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:14.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:14.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:14.958 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:25:14.958 -07 000000610 INF: =================== Cycle #26 ===================
17-03-17 19:25:15.568 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.009895,
17-03-17 19:25:16.178 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:25:16.178 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 19:25:16.178 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:25:16.198 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:25:16.198 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 19:25:16.198 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 19:25:16.328 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:25:16.348 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 19:25:16.348 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 19:25:16.398 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:25:16.418 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:25:16.418 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:25:16.518 -07 000000610 INF: =================== Cycle #26, Pumping Reagent CMS (4) ===================
17-03-17 19:25:16.518 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:25:16.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:25:16.548 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:25:16.548 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:25:16.548 -07 000000610 INF: =================== Cycle #26, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 19:25:16.678 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:25:16.688 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:25:16.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:25:16.718 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:25:18.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:18.188 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:25:18.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:18.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:18.638 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:25:18.638 -07 000000610 INF: =================== Cycle #26, Pumping Reagent CMS (4) ===================
17-03-17 19:25:18.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:25:18.798 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:25:18.798 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:25:18.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:25:18.958 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:25:18.958 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:25:18.958 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:25:19.088 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:25:19.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:19.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:19.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:19.578 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:25:19.578 -07 000000610 INF: =================== Cycle #26 ===================
17-03-17 19:25:20.798 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:25:20.798 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:25:20.798 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:25:20.818 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:25:20.818 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 19:25:20.818 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 19:25:20.928 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.011254,
17-03-17 19:25:20.968 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:25:20.988 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 19:25:20.988 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 19:25:21.038 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:25:21.058 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:25:21.058 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:25:21.158 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3) ===================
17-03-17 19:25:21.158 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:25:21.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:25:21.188 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:25:21.188 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:25:21.188 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:25:21.318 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:25:21.358 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:25:21.688 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:25:21.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:25:22.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:22.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:22.258 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:25:22.258 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3) ===================
17-03-17 19:25:22.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:25:22.418 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:25:22.418 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:25:22.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:25:22.578 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:25:22.578 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:25:22.578 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:25:22.708 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:25:22.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:23.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:23.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:23.198 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:25:23.198 -07 000000610 INF: =================== Cycle #26 ===================
17-03-17 19:25:23.198 -07 000000561 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:25:23.198 -07 000000626 INF: WaitCommand(10000) start
17-03-17 19:25:23.198 -07 000000561 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:25:24.418 -07 000000561 INF: AsyncDelayTimer waited 1215ms
17-03-17 19:25:24.418 -07 000000561 INF: LanePump: Xmit /1?\r
17-03-17 19:25:24.448 -07 000000561 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:25:24.448 -07 000000561 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:25:24.578 -07 000000561 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:25:24.618 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:25:26.148 -07 000000561 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:26.178 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:25:26.288 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.99219,
17-03-17 19:25:26.598 -07 000000561 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:26.628 -07 000000561 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:26.628 -07 000000561 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:25:26.628 -07 000000561 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:25:26.628 -07 000000561 INF: ===================  ===================
17-03-17 19:25:26.688 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:25:26.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:25:31.648 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.985358,
17-03-17 19:25:32.248 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:25:32.248 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:25:33.208 -07 000000626 INF: WaitCommand(10000) end
17-03-17 19:25:33.208 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3) ===================
17-03-17 19:25:33.208 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 19:25:33.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:25:33.238 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:25:33.238 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:25:33.238 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:25:33.368 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 19:25:33.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:25:36.688 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:25:36.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=309, R2=328, Total=637. Warn if over 250 bubbles per interval.
17-03-17 19:25:37.008 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.981281,
17-03-17 19:25:39.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:39.568 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:25:39.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:40.018 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:25:40.438 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:40.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:25:40.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:40.918 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:25:41.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:41.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:41.368 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 19:25:41.368 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3) ===================
17-03-17 19:25:41.498 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:25:41.528 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:25:41.528 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:25:41.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:25:41.688 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:25:41.688 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:25:41.688 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:25:41.688 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-17 19:25:41.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=311, R2=328, Total=639. Warn if over 250 bubbles per interval.
17-03-17 19:25:41.818 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:25:41.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:42.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:42.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:42.308 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:25:42.308 -07 000000610 INF: =================== Cycle #26 ===================
17-03-17 19:25:42.368 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.026244,
17-03-17 19:25:43.528 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 19:25:43.528 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 19:25:43.528 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:25:43.548 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:25:43.548 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 19:25:43.548 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 19:25:43.758 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:25:43.778 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 19:25:43.778 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 19:25:43.828 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:25:43.848 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:25:43.848 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:25:43.948 -07 000000610 INF: =================== Cycle #26, Pumping Reagent IMT (1) ===================
17-03-17 19:25:43.948 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:25:43.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:25:43.978 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:25:43.978 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:25:43.978 -07 000000610 INF: =================== Cycle #26, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 19:25:44.108 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:25:44.148 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:25:45.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:45.618 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:25:46.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:46.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:46.068 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:25:46.068 -07 000000610 INF: =================== Cycle #26, Pumping Reagent IMT (1) ===================
17-03-17 19:25:46.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:25:46.228 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:25:46.228 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:25:46.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:25:46.388 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:25:46.388 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:25:46.388 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:25:46.518 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:25:46.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:46.688 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 19:25:46.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=311, R2=329, Total=640. Warn if over 250 bubbles per interval.
17-03-17 19:25:46.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:47.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:47.008 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:25:47.008 -07 000000610 INF: =================== Cycle #26 ===================
17-03-17 19:25:47.728 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.018051,
17-03-17 19:25:48.228 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 19:25:48.228 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:25:48.228 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:25:48.248 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:25:48.248 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 19:25:48.248 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:25:48.478 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:25:48.498 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 19:25:48.498 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 19:25:48.548 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:25:48.568 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:25:48.568 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:25:48.668 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3) ===================
17-03-17 19:25:48.668 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:25:48.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:25:48.698 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:25:48.698 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:25:48.698 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:25:48.828 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:25:48.868 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:25:49.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:49.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:49.768 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:25:49.768 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3) ===================
17-03-17 19:25:49.898 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:25:49.928 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:25:49.928 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:25:50.058 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:25:50.088 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:25:50.088 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:25:50.088 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:25:50.218 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:25:50.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:50.678 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:25:50.708 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:25:50.708 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:25:50.708 -07 000000610 INF: =================== Cycle #26 ===================
17-03-17 19:25:50.708 -07 000000610 INF: =================== Cycle #26, Flow Cell Temp 65° ===================
17-03-17 19:25:50.708 -07 000000610 INF: =================== Cycle #26, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 19:25:50.708 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 19:25:50.708 -07 000000431 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:25:50.718 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:25:50.718 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:25:50.718 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-17 19:25:50.728 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:25:50.728 -07 000000610 INF: =================== Cycle #26, Flow Cell Temp 65° ===================
17-03-17 19:25:50.728 -07 000000610 INF: =================== Cycle #26 ===================
17-03-17 19:25:50.728 -07 000000610 INF: WaitCommand(30000) start
17-03-17 19:25:51.688 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:25:51.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=311, R2=329, Total=640. Warn if over 250 bubbles per interval.
17-03-17 19:25:53.088 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.001704,
17-03-17 19:25:56.688 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:25:56.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=311, R2=329, Total=640. Warn if over 250 bubbles per interval.
17-03-17 19:25:58.448 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.007176,
17-03-17 19:26:01.688 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:26:01.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=311, R2=329, Total=640. Warn if over 250 bubbles per interval.
17-03-17 19:26:03.808 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.986717,
17-03-17 19:26:06.688 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:26:06.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=311, R2=329, Total=640. Warn if over 250 bubbles per interval.
17-03-17 19:26:09.168 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.970374,
17-03-17 19:26:11.688 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:26:11.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=311, R2=329, Total=640. Warn if over 250 bubbles per interval.
17-03-17 19:26:14.528 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.956714,
17-03-17 19:26:16.688 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:26:16.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=311, R2=329, Total=640. Warn if over 250 bubbles per interval.
17-03-17 19:26:19.888 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.978563,
17-03-17 19:26:20.738 -07 000000610 INF: WaitCommand(30000) end
17-03-17 19:26:20.738 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3) ===================
17-03-17 19:26:20.738 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 19:26:20.838 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:26:20.868 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:26:20.868 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:26:20.868 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:26:20.998 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 19:26:21.038 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:26:21.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:26:21.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:26:21.608 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-17 19:26:21.608 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3) ===================
17-03-17 19:26:21.688 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 19:26:21.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=312, R2=329, Total=641. Warn if over 250 bubbles per interval.
17-03-17 19:26:21.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:26:21.768 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:26:21.768 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:26:21.898 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:26:21.928 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:26:21.928 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:26:21.928 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:26:22.058 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:26:22.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:26:22.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:26:22.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:26:22.548 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:26:22.548 -07 000000610 INF: =================== Cycle #26 ===================
17-03-17 19:26:22.548 -07 000000561 INF: WaitCommand(30000) start
17-03-17 19:26:22.548 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:26:22.548 -07 000000626 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:26:23.768 -07 000000626 INF: AsyncDelayTimer waited 1214ms
17-03-17 19:26:23.768 -07 000000626 INF: LanePump: Xmit /1?\r
17-03-17 19:26:23.798 -07 000000626 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:26:23.798 -07 000000626 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:26:23.928 -07 000000626 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:26:23.968 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:26:25.248 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.004458,
17-03-17 19:26:26.308 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-17 19:26:26.338 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:26:26.688 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:26:26.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=312, R2=329, Total=641. Warn if over 250 bubbles per interval.
17-03-17 19:26:26.758 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-17 19:26:26.788 -07 000000626 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:26:26.788 -07 000000626 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 19:26:26.788 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:26:26.788 -07 000000626 INF: ===================  ===================
17-03-17 19:26:30.608 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.023489,
17-03-17 19:26:31.688 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 19:26:31.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=312, R2=330, Total=642. Warn if over 250 bubbles per interval.
17-03-17 19:26:35.968 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.028963,
17-03-17 19:26:36.688 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:26:36.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=312, R2=330, Total=642. Warn if over 250 bubbles per interval.
17-03-17 19:26:41.328 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.037119,
17-03-17 19:26:41.688 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:26:41.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=312, R2=330, Total=642. Warn if over 250 bubbles per interval.
17-03-17 19:26:46.688 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.038479,
17-03-17 19:26:46.688 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:26:46.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=312, R2=330, Total=642. Warn if over 250 bubbles per interval.
17-03-17 19:26:51.688 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:26:51.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=312, R2=330, Total=642. Warn if over 250 bubbles per interval.
17-03-17 19:26:52.048 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.997626,
17-03-17 19:26:52.558 -07 000000561 INF: WaitCommand(30000) end
17-03-17 19:26:52.558 -07 000000610 INF: =================== Cycle #26, Flow Cell Temp 22° ===================
17-03-17 19:26:52.558 -07 000000610 INF: =================== Cycle #26, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 19:26:52.558 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 19:26:52.568 -07 000000012 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:26:52.568 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:26:52.568 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:26:52.568 -07 000000541 INF: FPGA: Recv TEC2EN 
17-03-17 19:26:52.578 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:26:52.578 -07 000000610 INF: =================== Cycle #26, Flow Cell Temp 22° ===================
17-03-17 19:26:52.578 -07 000000610 INF: =================== Cycle #26 ===================
17-03-17 19:26:52.578 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3) ===================
17-03-17 19:26:52.578 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:26:52.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:26:52.608 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:26:52.608 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:26:52.608 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:26:52.738 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:26:52.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:26:55.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:26:55.938 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:26:56.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:26:56.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:26:56.688 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 1
17-03-17 19:26:56.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=1, R2=5, Total=6. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:26:56.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:26:56.838 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:26:56.838 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:26:56.838 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3) ===================
17-03-17 19:26:56.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:26:56.998 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:26:56.998 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:26:57.128 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:26:57.158 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:26:57.158 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:26:57.158 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:26:57.288 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:26:57.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:26:57.408 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.000345,
17-03-17 19:26:57.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:26:57.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:26:57.778 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:26:57.778 -07 000000610 INF: =================== Cycle #26 ===================
17-03-17 19:26:58.998 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:26:58.998 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 19:26:58.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:26:59.018 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:26:59.018 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 19:26:59.018 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 19:26:59.168 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:26:59.188 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:26:59.188 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:26:59.238 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:26:59.258 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:26:59.258 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:26:59.358 -07 000000610 INF: =================== Cycle #26, Pumping Reagent USM (2) ===================
17-03-17 19:26:59.358 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:26:59.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:26:59.388 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:26:59.388 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:26:59.388 -07 000000610 INF: =================== Cycle #26, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 19:26:59.518 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:26:59.558 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:27:00.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:27:01.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:27:01.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:27:01.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:27:01.478 -07 000000610 INF: LanePump: Waited 1921 ms for pump motion to complete
17-03-17 19:27:01.478 -07 000000610 INF: =================== Cycle #26, Pumping Reagent USM (2) ===================
17-03-17 19:27:01.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:27:01.638 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:27:01.638 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:27:01.688 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:27:01.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:27:01.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:27:01.798 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:27:01.798 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:27:01.798 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:27:01.928 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:27:01.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:27:02.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:27:02.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:27:02.418 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:27:02.418 -07 000000610 INF: =================== Cycle #26 ===================
17-03-17 19:27:02.768 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.988112,
17-03-17 19:27:03.638 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:27:03.638 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:27:03.638 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:27:03.658 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:27:03.658 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 19:27:03.658 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:27:03.808 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:27:03.828 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:27:03.828 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:27:03.878 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:27:03.898 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:27:03.898 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:27:03.998 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3) ===================
17-03-17 19:27:03.998 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:27:03.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:27:04.028 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:27:04.028 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:27:04.028 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:27:04.158 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:27:04.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:27:05.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:27:05.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:27:05.098 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:27:05.098 -07 000000610 INF: =================== Cycle #26, Pumping Reagent PR2 (3) ===================
17-03-17 19:27:05.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:27:05.258 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:27:05.258 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:27:05.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:27:05.418 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:27:05.418 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:27:05.418 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:27:05.548 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:27:05.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:27:06.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:27:06.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:27:06.038 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:27:06.038 -07 000000610 INF: =================== Cycle #26 ===================
17-03-17 19:27:06.038 -07 000000012 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:27:06.038 -07 000000561 INF: WaitCommand(10000) start
17-03-17 19:27:06.038 -07 000000012 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:27:06.688 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:27:06.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:27:07.258 -07 000000012 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:27:07.258 -07 000000012 INF: LanePump: Xmit /1?\r
17-03-17 19:27:07.288 -07 000000012 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:27:07.288 -07 000000012 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:27:07.418 -07 000000012 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:27:07.458 -07 000000012 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:27:08.128 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.003063,
17-03-17 19:27:08.988 -07 000000012 INF: LanePump: Xmit /1Q\r
17-03-17 19:27:09.018 -07 000000012 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:27:09.438 -07 000000012 INF: LanePump: Xmit /1Q\r
17-03-17 19:27:09.468 -07 000000012 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:27:09.468 -07 000000012 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:27:09.468 -07 000000012 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:27:09.468 -07 000000012 INF: ===================  ===================
17-03-17 19:27:11.688 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:27:11.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:27:13.488 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.030322,
17-03-17 19:27:16.048 -07 000000561 INF: WaitCommand(10000) end
17-03-17 19:27:16.048 -07 000000610 INF: =================== Cycle #26, Imaging ===================
17-03-17 19:27:16.048 -07 000000610 INF: Imaging Cycle 26: ScanTilesCommand Cycle 26 time start.
17-03-17 19:27:16.048 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 19:27:16.048 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:27:16.078 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:27:16.078 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 19:27:16.078 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 19:27:16.378 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:27:16.398 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:27:16.398 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:27:16.448 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:27:16.468 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:27:16.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:16.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:16.468 -07 000000623 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 19:27:16.468 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:16.468 -07 000000623 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 19:27:16.478 -07 000000012 INF: FPGA: Recv EXLED1ON 
17-03-17 19:27:16.478 -07 000000623 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 19:27:16.478 -07 000000623 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 19:27:16.478 -07 000000569 INF: FPGA: Recv EXLED1ADCR 23200
17-03-17 19:27:16.488 -07 000000623 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:27:16.488 -07 000000623 INF: RedLED: Using Red data: Photodiode ADC 23200 --> 7.4 mW (old method), or 205.6 mW (new method). Difference = 198.2 mW
17-03-17 19:27:16.488 -07 000000623 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 19:27:16.488 -07 000000569 INF: FPGA: Recv EXLED1OFF 
17-03-17 19:27:16.498 -07 000000623 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:16.498 -07 000000623 INF: RedLED: LED was on for 17 ms
17-03-17 19:27:16.498 -07 000000623 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 19:27:16.498 -07 000000623 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 19:27:16.498 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:16.498 -07 000000623 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 19:27:16.498 -07 000000431 INF: FPGA: Recv EXLED2ON 
17-03-17 19:27:16.508 -07 000000623 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:27:16.508 -07 000000623 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:27:16.508 -07 000000569 INF: FPGA: Recv EXLED1ADCR 2096
17-03-17 19:27:16.518 -07 000000623 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:16.518 -07 000000623 INF: GreenLED: Using Green data: Photodiode ADC 2096 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.2 mW
17-03-17 19:27:16.518 -07 000000623 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 19:27:16.518 -07 000000012 INF: FPGA: Recv EXLED2OFF 
17-03-17 19:27:16.528 -07 000000623 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:16.528 -07 000000623 INF: GreenLED: LED was on for 19 ms
17-03-17 19:27:16.528 -07 000000623 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 19:27:16.528 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:27:16.528 -07 000000569 INF: FPGA: Recv EMCUR 
17-03-17 19:27:16.538 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:27:16.538 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 19:27:16.688 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:27:16.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:27:17.038 -07 000000012 INF: FPGA: Recv EMOUT
17-03-17 19:27:17.038 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 19:27:17.038 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 19:27:17.038 -07 000000569 INF: FPGA: Recv EMCUR 
17-03-17 19:27:17.048 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:27:17.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:27:17.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38134765625, Z-Position -0.127717620186302. ------
17-03-17 19:27:17.048 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:17.048 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17956 mm
17-03-17 19:27:17.048 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:27:17.048 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:17.058 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:27:17.058 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39224, sync = True, waitForSettling = False)
17-03-17 19:27:17.058 -07 000000431 INF: Z Motor: Moving to -0.179556 mm, started at -0.127718 mm, distance = -51.84 um
17-03-17 19:27:17.058 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:27:17.058 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:27:17.058 -07 000000462 INF: Y Motor: Moving to 59.9126 mm, started at 75.3813 mm, delta = -15.4687 mm
17-03-17 19:27:17.068 -07 000000431 INF: FPGA: Xmit ZDACW 39224\n [Z Motor]
17-03-17 19:27:17.068 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:27:17.078 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:17.078 -07 000000431 INF: FPGA: 'ZDACW 39224' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:27:17.078 -07 000000561 INF: FPGA: Recv YRDPOS 154381
17-03-17 19:27:17.088 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:17.088 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:27:17.088 -07 000000462 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:17.088 -07 000000462 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 19:27:17.088 -07 000000462 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:27:17.088 -07 000000561 INF: FPGA: Recv ZDACR 39224
17-03-17 19:27:17.098 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:27:17.098 -07 000000431 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 19:27:17.098 -07 000000462 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:27:17.258 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:27:17.258 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:27:18.778 -07 000000012 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 19:27:18.778 -07 000000462 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1695 ms overall
17-03-17 19:27:18.778 -07 000000462 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:27:18.778 -07 000000462 INF: Y Motor: To move from 75.381 to 59.913 (-15.469 mm) should take 24750 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 19:27:18.778 -07 000000462 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1695 ms, distance = 15.469 mm, average velocity = 9.126 mm/sec
17-03-17 19:27:18.848 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.011254,
17-03-17 19:27:21.628 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:21.628 -07 000000561 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:27:21.638 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:21.638 -07 000000462 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:21.658 -07 000000462 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:27:21.658 -07 000000462 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 19:27:21.658 -07 000000462 INF: Y Motor: Moved to 59.9116 after 4601 ms
17-03-17 19:27:21.658 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179556 mm (DAC = 39224)
17-03-17 19:27:21.658 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:21.658 -07 000000561 INF: FPGA: Recv ZSGSRD 37242
17-03-17 19:27:21.668 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:27:21.668 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:21.668 -07 000000012 INF: FPGA: Recv ZSGSRD 37241
17-03-17 19:27:21.678 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:27:21.678 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:21.678 -07 000000431 INF: FPGA: Recv ZSGSRD 37232
17-03-17 19:27:21.688 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:27:21.688 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:21.688 -07 000000561 INF: FPGA: Recv ZSGSRD 37245
17-03-17 19:27:21.688 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:27:21.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:27:21.698 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:21.698 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:21.698 -07 000000431 INF: FPGA: Recv ZSGSRD 37243
17-03-17 19:27:21.708 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:21.708 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:21.708 -07 000000569 INF: FPGA: Recv ZSGSRD 37240
17-03-17 19:27:21.718 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:21.718 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:21.718 -07 000000623 INF: FPGA: Recv ZSGSRD 37244
17-03-17 19:27:21.728 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:21.728 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:21.728 -07 000000012 INF: FPGA: Recv ZSGSRD 37237
17-03-17 19:27:21.738 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:21.738 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:21.738 -07 000000462 INF: FPGA: Recv ZSGSRD 37241
17-03-17 19:27:21.748 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:21.748 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:21.748 -07 000000541 INF: FPGA: Recv ZSGSRD 37241
17-03-17 19:27:21.758 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:21.758 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:21.758 -07 000000608 INF: FPGA: Recv ZPIEZORD 33685
17-03-17 19:27:21.768 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:21.768 -07 000000502 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 59.9 V, since DAC is at 5.985 V. Piezo Error = -7.9 V.
17-03-17 19:27:21.768 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.6 um, Read 10 ADC samples: Avg = 37241 (-178.7 uncal um), Error = 0.9 uncal um, Median = 37241 (-178.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37232 (-178.6 uncal um), Max = 37245 (-178.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:27:21.768 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37241, posNoise = 4, negNoise = 9
17-03-17 19:27:21.768 -07 000000502 INF: Z Motor: After move to -0.179556, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:21.768 -07 000000502 INF: Z Motor: Settle wait time = 4604 ms, measure time = 106 ms (allowed 150 ms), total time = 4710 ms
17-03-17 19:27:21.768 -07 000000502 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:27:21.818 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-17 19:27:21.818 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:27:21.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:21.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:21.818 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:21.818 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:21.818 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:27:21.818 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:21.818 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:27:21.818 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:27:21.848 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 19:27:21.848 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:27:21.848 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:27:21.848 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:27:21.868 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:27:21.868 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 19:27:21.868 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:27:21.908 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:27:22.108 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:27:22.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:27:22.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:27:22.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:27:22.148 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:27:22.148 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 19:27:22.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 19:27:22.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 19:27:22.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:22.238 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:27:22.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 19:27:22.248 -07 000000012 INF: Image SNR check: start
17-03-17 19:27:22.248 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:22.248 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:22.258 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:27:22.258 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:27:22.258 -07 000000012 INF: Image SNR check: pass  [peak (Max-Min)=70.90]
17-03-17 19:27:22.258 -07 000000012 INF: Autofocus start
17-03-17 19:27:22.258 -07 000000012 INF: MeasureProfile start
17-03-17 19:27:22.268 -07 000000012 INF: MeasureProfile done
17-03-17 19:27:22.268 -07 000000012 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:27:22.268 -07 000000012 INF: Autofocus finished
17-03-17 19:27:22.458 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:27:22.458 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:27:22.458 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.179567436382455. ----------
17-03-17 19:27:22.458 -07 000000610 INF: Cycle	26	Tile	1	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:27:22.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37721, sync = True, waitForSettling = True)
17-03-17 19:27:22.468 -07 000000610 INF: Z Motor: Moving to -0.172676 mm, started at -0.179567 mm, distance = 6.89 um
17-03-17 19:27:22.468 -07 000000610 INF: FPGA: Xmit ZDACW 37721\n [Z Motor]
17-03-17 19:27:22.468 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:27:22.478 -07 000000610 INF: FPGA: 'ZDACW 37721' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:27:22.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:22.478 -07 000000623 INF: FPGA: Recv ZDACR 37721
17-03-17 19:27:22.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:22.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:27:22.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:22.638 -07 000000012 INF: FPGA: Recv ZSGSRD 36170
17-03-17 19:27:22.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:27:22.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:22.648 -07 000000462 INF: FPGA: Recv ZSGSRD 36176
17-03-17 19:27:22.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:22.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:22.658 -07 000000541 INF: FPGA: Recv ZSGSRD 36172
17-03-17 19:27:22.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:22.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:22.668 -07 000000462 INF: FPGA: Recv ZSGSRD 36167
17-03-17 19:27:22.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:22.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:22.678 -07 000000541 INF: FPGA: Recv ZSGSRD 36166
17-03-17 19:27:22.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:22.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:22.688 -07 000000431 INF: FPGA: Recv ZSGSRD 36175
17-03-17 19:27:22.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:22.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:22.698 -07 000000431 INF: FPGA: Recv ZSGSRD 36173
17-03-17 19:27:22.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:22.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:22.708 -07 000000502 INF: FPGA: Recv ZSGSRD 36167
17-03-17 19:27:22.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:22.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:22.718 -07 000000431 INF: FPGA: Recv ZSGSRD 36173
17-03-17 19:27:22.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:22.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:22.728 -07 000000541 INF: FPGA: Recv ZSGSRD 36170
17-03-17 19:27:22.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:22.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:22.738 -07 000000462 INF: FPGA: Recv ZPIEZORD 32250
17-03-17 19:27:22.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:22.748 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.756 V. Piezo Error = -8.7 V.
17-03-17 19:27:22.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36171 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36171 (-171.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36166 (-171.8 uncal um), Max = 36176 (-171.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:27:22.748 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36171, posNoise = 5, negNoise = 5
17-03-17 19:27:22.748 -07 000000610 INF: Z Motor: After move to -0.172676, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:22.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:27:22.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:22.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:22.748 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:22.748 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:22.748 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:27:22.748 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:22.748 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:27:22.748 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:27:22.748 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:27:22.748 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:27:22.748 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:27:22.748 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:27:22.758 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:27:22.758 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:27:22.768 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:27:22.768 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:27:22.778 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 19:27:22.778 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:27:22.778 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:27:22.778 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:27:22.788 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:27:22.788 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 42 ms.
17-03-17 19:27:22.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37898 150\n [Camera]
17-03-17 19:27:22.998 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:27:23.398 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:27:23.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:27:23.398 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:27:23.398 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:27:23.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:27:23.398 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:27:23.408 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:27:23.408 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:27:23.408 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:27:23.408 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:27:23.588 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37898 787
17-03-17 19:27:23.748 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:27:23.798 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:27:23.798 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:27:23.798 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:23.798 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 19:27:23.798 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:27:23.798 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:23.798 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:27:23.798 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:27:23.808 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:27:23.818 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:27:23.928 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:27:23.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:27:23.938 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:27:23.938 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:27:23.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:27:23.938 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:27:23.938 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:27:23.938 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 19:27:23.938 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:27:23.938 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:27:24.128 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:27:24.128 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:27:24.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37898 150' command took 2 ms to send, 1321 ms to get response, and 1329 ms overall
17-03-17 19:27:24.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:27:24.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.172693529390771. ------
17-03-17 19:27:24.128 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:24.128 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17906 mm
17-03-17 19:27:24.128 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:27:24.138 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:24.138 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:27:24.138 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:27:24.138 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:27:24.138 -07 000000561 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 19:27:24.138 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 39116, sync = True, waitForSettling = False)
17-03-17 19:27:24.138 -07 000000551 INF: Z Motor: Moving to -0.179062 mm, started at -0.172694 mm, distance = -6.37 um
17-03-17 19:27:24.148 -07 000000551 INF: FPGA: Xmit ZDACW 39116\n [Z Motor]
17-03-17 19:27:24.148 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:27:24.158 -07 000000551 INF: FPGA: 'ZDACW 39116' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:27:24.158 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:24.158 -07 000000431 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:27:24.168 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:27:24.168 -07 000000561 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:24.168 -07 000000561 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:27:24.168 -07 000000561 INF: Y Motor: Moving 1330 steps2
17-03-17 19:27:24.168 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:24.168 -07 000000627 INF: FPGA: Recv ZDACR 39116
17-03-17 19:27:24.178 -07 000000551 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:27:24.178 -07 000000551 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:27:24.178 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:27:24.208 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.999021,
17-03-17 19:27:24.338 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:27:24.338 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:27:24.338 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:24.338 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:27:24.338 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:27:24.338 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:27:24.338 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:27:24.338 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:24.348 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:27:24.348 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 19:27:24.348 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:27:24.358 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 19:27:24.548 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 19:27:24.558 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 19:27:24.578 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:24.588 -07 000000623 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:27:24.588 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:27:24.588 -07 000000561 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:24.588 -07 000000561 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:27:24.588 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.831 mm, average velocity = 2.136 mm/sec
17-03-17 19:27:25.538 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:25.538 -07 000000541 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:27:25.548 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:27:25.548 -07 000000561 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:25.568 -07 000000561 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:27:25.568 -07 000000561 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:27:25.568 -07 000000561 INF: Y Motor: Moved to 60.7339 after 1429 ms (table move)
17-03-17 19:27:25.568 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179062 mm (DAC = 39116)
17-03-17 19:27:25.568 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:25.568 -07 000000478 INF: FPGA: Recv ZSGSRD 37161
17-03-17 19:27:25.578 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:27:25.578 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:25.578 -07 000000569 INF: FPGA: Recv ZSGSRD 37154
17-03-17 19:27:25.588 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:25.588 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:25.588 -07 000000475 INF: FPGA: Recv ZSGSRD 37169
17-03-17 19:27:25.598 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:25.598 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:25.598 -07 000000627 INF: FPGA: Recv ZSGSRD 37168
17-03-17 19:27:25.608 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:25.608 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:25.608 -07 000000475 INF: FPGA: Recv ZSGSRD 37169
17-03-17 19:27:25.618 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:25.618 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:25.618 -07 000000462 INF: FPGA: Recv ZSGSRD 37161
17-03-17 19:27:25.628 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:25.628 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:25.628 -07 000000475 INF: FPGA: Recv ZSGSRD 37162
17-03-17 19:27:25.638 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:25.638 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:25.638 -07 000000569 INF: FPGA: Recv ZSGSRD 37162
17-03-17 19:27:25.648 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:25.648 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:25.648 -07 000000541 INF: FPGA: Recv ZSGSRD 37155
17-03-17 19:27:25.658 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:25.658 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:25.658 -07 000000462 INF: FPGA: Recv ZSGSRD 37167
17-03-17 19:27:25.668 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:25.678 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:25.678 -07 000000478 INF: FPGA: Recv ZPIEZORD 33587
17-03-17 19:27:25.688 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:27:25.688 -07 000000502 INF: Z Motor: Piezo is near 51.8 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.969 V. Piezo Error = -7.9 V.
17-03-17 19:27:25.688 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.1 um, Read 10 ADC samples: Avg = 37163 (-178.2 uncal um), Error = 0.9 uncal um, Median = 37162 (-178.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 37154 (-178.1 uncal um), Max = 37169 (-178.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:27:25.688 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37163, posNoise = 6, negNoise = 9
17-03-17 19:27:25.688 -07 000000502 INF: Z Motor: After move to -0.179062, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:25.688 -07 000000502 INF: Z Motor: Settle wait time = 1432 ms, measure time = 115 ms (allowed 150 ms), total time = 1547 ms
17-03-17 19:27:25.688 -07 000000502 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-17 19:27:25.728 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 19:27:25.728 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:27:25.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:25.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:25.728 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:25.728 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:25.728 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:27:25.728 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:25.728 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:27:25.728 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:27:25.738 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:27:25.738 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:27:25.748 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:27:25.748 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:27:25.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:27:25.798 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:27:25.998 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:27:25.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:27:25.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:27:25.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) start.
17-03-17 19:27:26.038 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:27:26.038 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:27:26.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:27:26.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:27:26.128 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:26.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:27:26.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:27:26.138 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:26.138 -07 000000626 INF: Autofocus start
17-03-17 19:27:26.138 -07 000000626 INF: MeasureProfile start
17-03-17 19:27:26.138 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:26.148 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:27:26.148 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:27:26.148 -07 000000626 INF: MeasureProfile done
17-03-17 19:27:26.148 -07 000000626 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:27:26.148 -07 000000626 INF: Autofocus finished
17-03-17 19:27:26.348 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:27:26.348 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:27:26.348 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.179066347835397. ----------
17-03-17 19:27:26.348 -07 000000610 INF: Cycle	26	Tile	2	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:27:26.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37631, sync = True, waitForSettling = True)
17-03-17 19:27:26.358 -07 000000610 INF: Z Motor: Moving to -0.172264 mm, started at -0.179066 mm, distance = 6.80 um
17-03-17 19:27:26.358 -07 000000610 INF: FPGA: Xmit ZDACW 37631\n [Z Motor]
17-03-17 19:27:26.358 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:27:26.368 -07 000000610 INF: FPGA: 'ZDACW 37631' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:27:26.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:26.368 -07 000000541 INF: FPGA: Recv ZDACR 37631
17-03-17 19:27:26.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:26.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:27:26.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:26.528 -07 000000462 INF: FPGA: Recv ZSGSRD 36107
17-03-17 19:27:26.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:27:26.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:26.538 -07 000000627 INF: FPGA: Recv ZSGSRD 36111
17-03-17 19:27:26.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:26.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:26.548 -07 000000627 INF: FPGA: Recv ZSGSRD 36104
17-03-17 19:27:26.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:26.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:26.558 -07 000000541 INF: FPGA: Recv ZSGSRD 36102
17-03-17 19:27:26.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:26.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:26.568 -07 000000569 INF: FPGA: Recv ZSGSRD 36108
17-03-17 19:27:26.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:26.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:26.578 -07 000000462 INF: FPGA: Recv ZSGSRD 36103
17-03-17 19:27:26.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:26.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:26.588 -07 000000502 INF: FPGA: Recv ZSGSRD 36104
17-03-17 19:27:26.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:26.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:26.598 -07 000000478 INF: FPGA: Recv ZSGSRD 36107
17-03-17 19:27:26.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:26.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:26.608 -07 000000626 INF: FPGA: Recv ZSGSRD 36104
17-03-17 19:27:26.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:26.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:26.618 -07 000000475 INF: FPGA: Recv ZSGSRD 36105
17-03-17 19:27:26.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:26.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:26.628 -07 000000462 INF: FPGA: Recv ZPIEZORD 32157
17-03-17 19:27:26.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:26.638 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.742 V. Piezo Error = -8.7 V.
17-03-17 19:27:26.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36106 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36104 (-171.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36102 (-171.4 uncal um), Max = 36111 (-171.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:27:26.638 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36106, posNoise = 5, negNoise = 4
17-03-17 19:27:26.638 -07 000000610 INF: Z Motor: After move to -0.172264, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:26.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:27:26.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:26.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:26.638 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:26.638 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:26.638 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:27:26.638 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:26.638 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:27:26.638 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:27:26.638 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:27:26.638 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:27:26.638 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:27:26.638 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:27:26.648 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:27:26.648 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:27:26.648 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:27:26.648 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:27:26.658 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:27:26.658 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:27:26.658 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:27:26.658 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:27:26.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37808 150\n [Camera]
17-03-17 19:27:26.688 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:27:26.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:27:26.868 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:27:27.268 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:27:27.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:27:27.268 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:27:27.268 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:27:27.268 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:27:27.268 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:27:27.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:27:27.268 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:27:27.268 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:27:27.268 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:27:27.458 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37808 787
17-03-17 19:27:27.608 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:27:27.668 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:27:27.668 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:27:27.668 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:27.668 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:27:27.668 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:27:27.668 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 19:27:27.668 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:27:27.668 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:27.678 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:27:27.678 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:27:27.798 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:27:27.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:27:27.798 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:27:27.798 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:27:27.798 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:27:27.808 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:27:27.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:27:27.808 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:27:27.808 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:27:27.808 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:27:27.988 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:27:27.998 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:27:27.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37808 150' command took 2 ms to send, 1320 ms to get response, and 1329 ms overall
17-03-17 19:27:27.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:27:27.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.172275955601556. ------
17-03-17 19:27:27.998 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:27.998 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17882 mm
17-03-17 19:27:27.998 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:27:27.998 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:28.008 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:27:28.008 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:27:28.008 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 39064, sync = True, waitForSettling = False)
17-03-17 19:27:28.008 -07 000000502 INF: Z Motor: Moving to -0.178824 mm, started at -0.172276 mm, distance = -6.55 um
17-03-17 19:27:28.008 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:27:28.008 -07 000000626 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 19:27:28.018 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:28.018 -07 000000561 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:27:28.028 -07 000000502 INF: FPGA: Xmit ZDACW 39064\n [Z Motor]
17-03-17 19:27:28.028 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:27:28.028 -07 000000626 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:28.028 -07 000000626 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:27:28.028 -07 000000626 INF: Y Motor: Moving 1342 steps-19
17-03-17 19:27:28.028 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:27:28.038 -07 000000502 INF: FPGA: 'ZDACW 39064' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:27:28.038 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:27:28.048 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:28.048 -07 000000551 INF: FPGA: Recv ZDACR 39064
17-03-17 19:27:28.058 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:27:28.058 -07 000000502 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 19:27:28.208 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:27:28.208 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 19:27:28.208 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:27:28.208 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:28.208 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:27:28.208 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 19:27:28.208 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:27:28.208 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:28.208 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:27:28.218 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:27:28.218 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 19:27:28.218 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:27:28.408 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:27:28.408 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:27:28.448 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:28.448 -07 000000623 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:27:28.458 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:27:28.458 -07 000000626 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:28.458 -07 000000626 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:27:28.458 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-17 19:27:29.408 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:29.408 -07 000000569 INF: FPGA: Recv YRDPOS 126085
17-03-17 19:27:29.418 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:27:29.418 -07 000000626 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:29.438 -07 000000626 INF: Y Motor: After move to 61.572609, error = -0.007668, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:27:29.438 -07 000000626 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:27:29.438 -07 000000626 INF: Y Motor: Moved to 61.5649 after 1431 ms (table move)
17-03-17 19:27:29.438 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178824 mm (DAC = 39064)
17-03-17 19:27:29.438 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:29.438 -07 000000623 INF: FPGA: Recv ZSGSRD 37129
17-03-17 19:27:29.448 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:27:29.448 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:29.448 -07 000000478 INF: FPGA: Recv ZSGSRD 37123
17-03-17 19:27:29.458 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:29.458 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:29.458 -07 000000623 INF: FPGA: Recv ZSGSRD 37120
17-03-17 19:27:29.468 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:29.468 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:29.468 -07 000000478 INF: FPGA: Recv ZSGSRD 37119
17-03-17 19:27:29.478 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:29.478 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:29.478 -07 000000626 INF: FPGA: Recv ZSGSRD 37124
17-03-17 19:27:29.488 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:29.488 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:29.488 -07 000000478 INF: FPGA: Recv ZSGSRD 37133
17-03-17 19:27:29.498 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:29.498 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:29.498 -07 000000431 INF: FPGA: Recv ZSGSRD 37133
17-03-17 19:27:29.508 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:29.508 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:29.508 -07 000000626 INF: FPGA: Recv ZSGSRD 37125
17-03-17 19:27:29.518 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:29.518 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:29.518 -07 000000623 INF: FPGA: Recv ZSGSRD 37125
17-03-17 19:27:29.528 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:29.528 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:29.528 -07 000000626 INF: FPGA: Recv ZSGSRD 37122
17-03-17 19:27:29.538 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:29.538 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:29.538 -07 000000608 INF: FPGA: Recv ZPIEZORD 33536
17-03-17 19:27:29.548 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:29.548 -07 000000627 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.961 V. Piezo Error = -8.0 V.
17-03-17 19:27:29.548 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37125 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37124 (-177.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37119 (-177.9 uncal um), Max = 37133 (-178.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:27:29.548 -07 000000627 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37125, posNoise = 8, negNoise = 6
17-03-17 19:27:29.548 -07 000000627 INF: Z Motor: After move to -0.178824, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:29.548 -07 000000627 INF: Z Motor: Settle wait time = 1434 ms, measure time = 105 ms (allowed 150 ms), total time = 1539 ms
17-03-17 19:27:29.548 -07 000000627 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:27:29.568 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.003063,
17-03-17 19:27:29.598 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 19:27:29.598 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:27:29.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:29.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:29.598 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:29.598 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:29.598 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:27:29.598 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:29.608 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:27:29.608 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:27:29.608 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:27:29.608 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:27:29.618 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:27:29.618 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:27:29.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:27:29.668 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:27:29.868 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:27:29.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:27:29.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:27:29.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 19:27:29.908 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:27:29.908 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:27:29.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 272 ms to get response, and 285 ms overall
17-03-17 19:27:29.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 19:27:29.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:29.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:27:29.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 19:27:30.008 -07 000000561 INF: Autofocus start
17-03-17 19:27:30.008 -07 000000561 INF: MeasureProfile start
17-03-17 19:27:30.008 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:30.008 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:30.018 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:27:30.018 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:27:30.018 -07 000000561 INF: MeasureProfile done
17-03-17 19:27:30.018 -07 000000561 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:27:30.018 -07 000000561 INF: Autofocus finished
17-03-17 19:27:30.218 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:27:30.218 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 19:27:30.218 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56494140625, Z-position -0.17882222777401. ----------
17-03-17 19:27:30.228 -07 000000610 INF: Cycle	26	Tile	3	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:27:30.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37597, sync = True, waitForSettling = True)
17-03-17 19:27:30.228 -07 000000610 INF: Z Motor: Moving to -0.172108 mm, started at -0.178822 mm, distance = 6.71 um
17-03-17 19:27:30.228 -07 000000610 INF: FPGA: Xmit ZDACW 37597\n [Z Motor]
17-03-17 19:27:30.228 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:27:30.238 -07 000000610 INF: FPGA: 'ZDACW 37597' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:27:30.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:30.238 -07 000000541 INF: FPGA: Recv ZDACR 37597
17-03-17 19:27:30.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:30.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:27:30.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:30.398 -07 000000626 INF: FPGA: Recv ZSGSRD 36081
17-03-17 19:27:30.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:27:30.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:30.408 -07 000000431 INF: FPGA: Recv ZSGSRD 36081
17-03-17 19:27:30.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:30.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:30.418 -07 000000478 INF: FPGA: Recv ZSGSRD 36074
17-03-17 19:27:30.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:30.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:30.428 -07 000000569 INF: FPGA: Recv ZSGSRD 36078
17-03-17 19:27:30.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:30.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:30.438 -07 000000475 INF: FPGA: Recv ZSGSRD 36083
17-03-17 19:27:30.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:30.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:30.448 -07 000000551 INF: FPGA: Recv ZSGSRD 36087
17-03-17 19:27:30.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:30.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:30.458 -07 000000561 INF: FPGA: Recv ZSGSRD 36083
17-03-17 19:27:30.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:30.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:30.468 -07 000000431 INF: FPGA: Recv ZSGSRD 36084
17-03-17 19:27:30.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:30.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:30.478 -07 000000627 INF: FPGA: Recv ZSGSRD 36083
17-03-17 19:27:30.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:30.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:30.488 -07 000000431 INF: FPGA: Recv ZSGSRD 36082
17-03-17 19:27:30.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:30.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:30.498 -07 000000462 INF: FPGA: Recv ZPIEZORD 32125
17-03-17 19:27:30.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:30.508 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.737 V. Piezo Error = -8.7 V.
17-03-17 19:27:30.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36082 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36082 (-171.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36074 (-171.2 uncal um), Max = 36087 (-171.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:27:30.508 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36082, posNoise = 5, negNoise = 8
17-03-17 19:27:30.508 -07 000000610 INF: Z Motor: After move to -0.172108, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:30.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:27:30.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:30.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:30.508 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:30.508 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:27:30.508 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:30.508 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:27:30.508 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:27:30.508 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:30.508 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:27:30.508 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:27:30.508 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:27:30.508 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:27:30.508 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:27:30.508 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:27:30.508 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:27:30.518 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:27:30.518 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:27:30.518 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:27:30.528 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:27:30.528 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:27:30.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37774 150\n [Camera]
17-03-17 19:27:30.738 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 19:27:31.128 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:27:31.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:27:31.128 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:27:31.128 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:27:31.128 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2191720664, 0x0, 391868352) start.
17-03-17 19:27:31.138 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:27:31.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:27:31.138 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:27:31.138 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:27:31.138 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2227142928, 0x0, 418435064) start.
17-03-17 19:27:31.328 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37774 787
17-03-17 19:27:31.468 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:27:31.508 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2191720664, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:27:31.508 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2227142928, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:27:31.508 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:27:31.508 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:31.508 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:27:31.508 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:31.518 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:27:31.518 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:27:31.518 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:27:31.518 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:27:31.668 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:27:31.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:27:31.668 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:27:31.668 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:27:31.668 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:27:31.668 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:27:31.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:27:31.668 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:27:31.668 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:27:31.668 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:27:31.688 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:27:31.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:27:31.858 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:27:31.858 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:27:31.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37774 150' command took 2 ms to send, 1325 ms to get response, and 1330 ms overall
17-03-17 19:27:31.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:27:31.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56494140625, Z-Position -0.172121774510154. ------
17-03-17 19:27:31.868 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:31.868 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17834 mm
17-03-17 19:27:31.868 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:27:31.868 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:27:31.868 -07 000000623 INF: Y Motor: Moving to 62.4026 mm, started at 61.5649 mm, delta = 0.8377 mm
17-03-17 19:27:31.868 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:31.868 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38958, sync = True, waitForSettling = False)
17-03-17 19:27:31.868 -07 000000627 INF: Z Motor: Moving to -0.178338 mm, started at -0.172122 mm, distance = -6.22 um
17-03-17 19:27:31.878 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:27:31.878 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:31.878 -07 000000462 INF: FPGA: Recv YRDPOS 126085
17-03-17 19:27:31.888 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:27:31.888 -07 000000623 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:31.888 -07 000000623 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:27:31.888 -07 000000623 INF: Y Motor: Moving 1340 steps-17
17-03-17 19:27:31.888 -07 000000627 INF: FPGA: Xmit ZDACW 38958\n [Z Motor]
17-03-17 19:27:31.888 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:27:31.898 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:27:31.898 -07 000000627 INF: FPGA: 'ZDACW 38958' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:27:31.908 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:27:31.918 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:31.918 -07 000000431 INF: FPGA: Recv ZDACR 38958
17-03-17 19:27:31.928 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:27:31.928 -07 000000627 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 19:27:32.058 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:27:32.058 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:27:32.058 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:32.058 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:27:32.058 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:27:32.058 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:32.058 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:27:32.058 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:27:32.068 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:27:32.068 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:27:32.098 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:27:32.098 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:27:32.278 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 19:27:32.278 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:27:32.318 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:32.318 -07 000000462 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:27:32.328 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:27:32.328 -07 000000623 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:32.328 -07 000000623 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:27:32.328 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.105 mm/sec
17-03-17 19:27:33.278 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:33.278 -07 000000627 INF: FPGA: Recv YRDPOS 127788
17-03-17 19:27:33.288 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:27:33.288 -07 000000623 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:33.308 -07 000000623 INF: Y Motor: After move to 62.402607, error = -0.006123, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:27:33.308 -07 000000623 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:27:33.308 -07 000000623 INF: Y Motor: Moved to 62.3965 after 1435 ms (table move)
17-03-17 19:27:33.308 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178338 mm (DAC = 38958)
17-03-17 19:27:33.308 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:33.308 -07 000000551 INF: FPGA: Recv ZSGSRD 37047
17-03-17 19:27:33.318 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:27:33.318 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:33.318 -07 000000608 INF: FPGA: Recv ZSGSRD 37048
17-03-17 19:27:33.328 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:33.328 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:33.328 -07 000000561 INF: FPGA: Recv ZSGSRD 37048
17-03-17 19:27:33.338 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:33.338 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:33.338 -07 000000608 INF: FPGA: Recv ZSGSRD 37047
17-03-17 19:27:33.348 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:33.348 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:33.348 -07 000000541 INF: FPGA: Recv ZSGSRD 37054
17-03-17 19:27:33.358 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:33.358 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:33.358 -07 000000627 INF: FPGA: Recv ZSGSRD 37061
17-03-17 19:27:33.368 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:33.368 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:33.368 -07 000000569 INF: FPGA: Recv ZSGSRD 37057
17-03-17 19:27:33.378 -07 000000012 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:33.378 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:33.378 -07 000000502 INF: FPGA: Recv ZSGSRD 37043
17-03-17 19:27:33.388 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:33.388 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:33.388 -07 000000431 INF: FPGA: Recv ZSGSRD 37045
17-03-17 19:27:33.398 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:33.398 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:33.398 -07 000000608 INF: FPGA: Recv ZSGSRD 37047
17-03-17 19:27:33.408 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:33.408 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:33.408 -07 000000502 INF: FPGA: Recv ZPIEZORD 33442
17-03-17 19:27:33.418 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:33.418 -07 000000012 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.945 V. Piezo Error = -8.0 V.
17-03-17 19:27:33.418 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.3 um, Read 10 ADC samples: Avg = 37050 (-177.4 uncal um), Error = 0.9 uncal um, Median = 37048 (-177.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 37043 (-177.4 uncal um), Max = 37061 (-177.5 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:27:33.418 -07 000000012 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37050, posNoise = 11, negNoise = 7
17-03-17 19:27:33.418 -07 000000012 INF: Z Motor: After move to -0.178338, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:33.418 -07 000000012 INF: Z Motor: Settle wait time = 1437 ms, measure time = 107 ms (allowed 150 ms), total time = 1544 ms
17-03-17 19:27:33.418 -07 000000012 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:27:33.468 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 19:27:33.468 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:27:33.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:33.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:33.468 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:33.468 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:33.468 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:27:33.468 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:33.468 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:27:33.468 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:27:33.478 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:27:33.478 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:27:33.488 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:27:33.488 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:27:33.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:27:33.528 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:27:33.728 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:27:33.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:27:33.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:27:33.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2352550048, 0x0, 559484976) start.
17-03-17 19:27:33.768 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:27:33.768 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 19:27:33.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 19:27:33.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2352550048, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:27:33.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:33.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:27:33.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:27:33.868 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:33.868 -07 000000561 INF: Autofocus start
17-03-17 19:27:33.868 -07 000000561 INF: MeasureProfile start
17-03-17 19:27:33.868 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:33.878 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:27:33.878 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:27:33.888 -07 000000561 INF: MeasureProfile done
17-03-17 19:27:33.888 -07 000000561 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:27:33.888 -07 000000561 INF: Autofocus finished
17-03-17 19:27:34.078 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:27:34.078 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 206 ms overall
17-03-17 19:27:34.088 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.396484375, Z-position -0.178340411863378. ----------
17-03-17 19:27:34.088 -07 000000610 INF: Cycle	26	Tile	4	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:27:34.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37473, sync = True, waitForSettling = True)
17-03-17 19:27:34.088 -07 000000610 INF: Z Motor: Moving to -0.171540 mm, started at -0.178340 mm, distance = 6.80 um
17-03-17 19:27:34.088 -07 000000610 INF: FPGA: Xmit ZDACW 37473\n [Z Motor]
17-03-17 19:27:34.098 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:27:34.098 -07 000000610 INF: FPGA: 'ZDACW 37473' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:27:34.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:34.098 -07 000000502 INF: FPGA: Recv ZDACR 37473
17-03-17 19:27:34.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:34.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:27:34.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:34.258 -07 000000478 INF: FPGA: Recv ZSGSRD 35983
17-03-17 19:27:34.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:27:34.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:34.268 -07 000000012 INF: FPGA: Recv ZSGSRD 35995
17-03-17 19:27:34.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:34.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:34.278 -07 000000551 INF: FPGA: Recv ZSGSRD 35992
17-03-17 19:27:34.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:34.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:34.288 -07 000000462 INF: FPGA: Recv ZSGSRD 36000
17-03-17 19:27:34.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:34.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:34.298 -07 000000623 INF: FPGA: Recv ZSGSRD 35989
17-03-17 19:27:34.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:34.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:34.308 -07 000000569 INF: FPGA: Recv ZSGSRD 35993
17-03-17 19:27:34.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:34.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:34.318 -07 000000551 INF: FPGA: Recv ZSGSRD 35997
17-03-17 19:27:34.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:34.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:34.328 -07 000000012 INF: FPGA: Recv ZSGSRD 35988
17-03-17 19:27:34.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:34.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:34.338 -07 000000627 INF: FPGA: Recv ZSGSRD 35990
17-03-17 19:27:34.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:34.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:34.348 -07 000000475 INF: FPGA: Recv ZSGSRD 35995
17-03-17 19:27:34.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:34.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:34.358 -07 000000502 INF: FPGA: Recv ZPIEZORD 32079
17-03-17 19:27:34.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:34.368 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.718 V. Piezo Error = -8.7 V.
17-03-17 19:27:34.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35992 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35992 (-170.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35983 (-170.6 uncal um), Max = 36000 (-170.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:27:34.368 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35992, posNoise = 8, negNoise = 9
17-03-17 19:27:34.368 -07 000000610 INF: Z Motor: After move to -0.171540, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:34.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:27:34.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:34.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:34.368 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:27:34.368 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:27:34.368 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:34.368 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:34.368 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:27:34.368 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:34.368 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:27:34.368 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:27:34.368 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:27:34.368 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:27:34.368 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 19:27:34.368 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:27:34.378 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:27:34.378 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:27:34.378 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:27:34.378 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:27:34.388 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:27:34.388 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:27:34.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37650 150\n [Camera]
17-03-17 19:27:34.588 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:27:34.928 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.981281,
17-03-17 19:27:34.988 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:27:34.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:27:34.988 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:27:34.988 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:27:34.988 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2371631432, 0x0, 391868352) start.
17-03-17 19:27:34.988 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:27:34.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:27:34.988 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:27:34.988 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:27:34.988 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:27:35.188 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37650 789
17-03-17 19:27:35.328 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:27:35.368 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:27:35.368 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:27:35.368 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:35.368 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2371631432, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:27:35.368 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:27:35.368 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:35.368 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:27:35.378 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:27:35.378 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:27:35.378 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:27:35.528 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:27:35.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:27:35.528 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:27:35.528 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:27:35.528 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 19:27:35.528 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:27:35.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:27:35.528 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:27:35.528 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:27:35.528 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 19:27:35.718 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:27:35.718 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:27:35.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37650 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-17 19:27:35.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:27:35.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.396484375, Z-Position -0.171543595417395. ------
17-03-17 19:27:35.718 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17787 mm
17-03-17 19:27:35.718 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:27:35.718 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:35.728 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:27:35.728 -07 000000475 INF: Y Motor: Moving to 63.2326 mm, started at 62.3965 mm, delta = 0.8361 mm
17-03-17 19:27:35.728 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:35.728 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38856, sync = True, waitForSettling = False)
17-03-17 19:27:35.728 -07 000000626 INF: Z Motor: Moving to -0.177871 mm, started at -0.171544 mm, distance = -6.33 um
17-03-17 19:27:35.728 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:35.728 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:27:35.728 -07 000000541 INF: FPGA: Recv YRDPOS 127788
17-03-17 19:27:35.738 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:35.738 -07 000000475 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:35.738 -07 000000475 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:27:35.738 -07 000000475 INF: Y Motor: Moving 1338 steps-14
17-03-17 19:27:35.738 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:27:35.748 -07 000000626 INF: FPGA: Xmit ZDACW 38856\n [Z Motor]
17-03-17 19:27:35.748 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:27:35.758 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:27:35.758 -07 000000626 INF: FPGA: 'ZDACW 38856' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:27:35.768 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:35.768 -07 000000569 INF: FPGA: Recv ZDACR 38856
17-03-17 19:27:35.778 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:27:35.778 -07 000000626 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 19:27:35.908 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:27:35.908 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:27:35.908 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:35.908 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:27:35.908 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:27:35.908 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:35.918 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:27:35.918 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:27:35.918 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:27:35.928 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:27:35.938 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:27:35.938 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 208 ms overall
17-03-17 19:27:36.128 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 19:27:36.128 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:27:36.168 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:36.168 -07 000000626 INF: FPGA: Recv YRDPOS 129484
17-03-17 19:27:36.178 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:27:36.178 -07 000000475 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:36.178 -07 000000475 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:27:36.178 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.106 mm/sec
17-03-17 19:27:36.688 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:27:36.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:27:37.128 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:37.128 -07 000000626 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:27:37.138 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:27:37.138 -07 000000475 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:37.158 -07 000000475 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:27:37.158 -07 000000475 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:27:37.158 -07 000000475 INF: Y Motor: Moved to 63.2251 after 1430 ms (table move)
17-03-17 19:27:37.158 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177871 mm (DAC = 38856)
17-03-17 19:27:37.158 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:37.158 -07 000000462 INF: FPGA: Recv ZSGSRD 36981
17-03-17 19:27:37.168 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:27:37.168 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:37.168 -07 000000561 INF: FPGA: Recv ZSGSRD 36970
17-03-17 19:27:37.178 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:37.178 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:37.178 -07 000000462 INF: FPGA: Recv ZSGSRD 36972
17-03-17 19:27:37.188 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:37.188 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:37.188 -07 000000569 INF: FPGA: Recv ZSGSRD 36975
17-03-17 19:27:37.198 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:37.198 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:37.198 -07 000000627 INF: FPGA: Recv ZSGSRD 36982
17-03-17 19:27:37.208 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:37.208 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:37.208 -07 000000561 INF: FPGA: Recv ZSGSRD 36984
17-03-17 19:27:37.218 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:37.218 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:37.218 -07 000000626 INF: FPGA: Recv ZSGSRD 36978
17-03-17 19:27:37.228 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:37.228 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:37.228 -07 000000462 INF: FPGA: Recv ZSGSRD 36984
17-03-17 19:27:37.238 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:37.238 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:37.238 -07 000000475 INF: FPGA: Recv ZSGSRD 36979
17-03-17 19:27:37.248 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:37.248 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:37.248 -07 000000561 INF: FPGA: Recv ZSGSRD 36974
17-03-17 19:27:37.258 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:37.258 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:37.258 -07 000000475 INF: FPGA: Recv ZPIEZORD 33344
17-03-17 19:27:37.268 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:37.268 -07 000000608 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -8.1 V.
17-03-17 19:27:37.268 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36978 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36978 (-177.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36970 (-176.9 uncal um), Max = 36984 (-177.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:27:37.268 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36978, posNoise = 6, negNoise = 8
17-03-17 19:27:37.268 -07 000000608 INF: Z Motor: After move to -0.177871, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:37.268 -07 000000608 INF: Z Motor: Settle wait time = 1435 ms, measure time = 104 ms (allowed 150 ms), total time = 1539 ms
17-03-17 19:27:37.268 -07 000000608 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:27:37.318 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 19:27:37.318 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:27:37.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:37.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:37.318 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:37.318 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:37.318 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:27:37.318 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:37.318 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:27:37.318 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:27:37.328 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:27:37.328 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:27:37.328 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:27:37.328 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:27:37.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:27:37.378 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 19:27:37.578 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 19:27:37.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 19:27:37.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:27:37.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 19:27:37.618 -07 000000627 INF: FPGA: Recv @CAMSNAP 283
17-03-17 19:27:37.618 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 19:27:37.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 287 ms overall
17-03-17 19:27:37.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:27:37.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:37.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:27:37.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:27:37.718 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:37.718 -07 000000627 INF: Autofocus start
17-03-17 19:27:37.718 -07 000000627 INF: MeasureProfile start
17-03-17 19:27:37.718 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:37.728 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:27:37.728 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:27:37.728 -07 000000627 INF: MeasureProfile done
17-03-17 19:27:37.728 -07 000000627 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 19:27:37.738 -07 000000627 INF: Autofocus finished
17-03-17 19:27:37.928 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:27:37.928 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:27:37.928 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.177877868589172. ----------
17-03-17 19:27:37.938 -07 000000610 INF: Cycle	26	Tile	5	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:27:37.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37335, sync = True, waitForSettling = True)
17-03-17 19:27:37.938 -07 000000610 INF: Z Motor: Moving to -0.170909 mm, started at -0.177878 mm, distance = 6.97 um
17-03-17 19:27:37.938 -07 000000610 INF: FPGA: Xmit ZDACW 37335\n [Z Motor]
17-03-17 19:27:37.938 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:27:37.948 -07 000000610 INF: FPGA: 'ZDACW 37335' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:27:37.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:37.948 -07 000000626 INF: FPGA: Recv ZDACR 37335
17-03-17 19:27:37.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:37.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:27:38.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:38.108 -07 000000475 INF: FPGA: Recv ZSGSRD 35893
17-03-17 19:27:38.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:27:38.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:38.118 -07 000000462 INF: FPGA: Recv ZSGSRD 35896
17-03-17 19:27:38.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:38.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:38.128 -07 000000626 INF: FPGA: Recv ZSGSRD 35897
17-03-17 19:27:38.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:38.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:38.138 -07 000000475 INF: FPGA: Recv ZSGSRD 35897
17-03-17 19:27:38.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:38.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:38.148 -07 000000627 INF: FPGA: Recv ZSGSRD 35893
17-03-17 19:27:38.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:38.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:38.158 -07 000000569 INF: FPGA: Recv ZSGSRD 35896
17-03-17 19:27:38.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:38.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:38.168 -07 000000608 INF: FPGA: Recv ZSGSRD 35889
17-03-17 19:27:38.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:38.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:38.178 -07 000000569 INF: FPGA: Recv ZSGSRD 35897
17-03-17 19:27:38.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:38.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:38.188 -07 000000626 INF: FPGA: Recv ZSGSRD 35892
17-03-17 19:27:38.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:38.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:38.198 -07 000000569 INF: FPGA: Recv ZSGSRD 35891
17-03-17 19:27:38.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:38.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:38.208 -07 000000561 INF: FPGA: Recv ZPIEZORD 31901
17-03-17 19:27:38.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:38.218 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.697 V. Piezo Error = -8.8 V.
17-03-17 19:27:38.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35894 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35894 (-170.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35889 (-170.0 uncal um), Max = 35897 (-170.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:27:38.218 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35894, posNoise = 3, negNoise = 5
17-03-17 19:27:38.218 -07 000000610 INF: Z Motor: After move to -0.170909, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:38.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:27:38.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:38.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:38.218 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:27:38.218 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:38.218 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:38.218 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:27:38.218 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:27:38.218 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:27:38.218 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:27:38.218 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:38.218 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:27:38.218 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:27:38.218 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:27:38.218 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:27:38.228 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:27:38.228 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:27:38.238 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:27:38.238 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:27:38.238 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 19:27:38.238 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:27:38.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37512 150\n [Camera]
17-03-17 19:27:38.438 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:27:38.838 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:27:38.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:27:38.838 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:27:38.838 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:27:38.838 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 19:27:38.838 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:27:38.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:27:38.838 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:27:38.838 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:27:38.838 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 19:27:39.028 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37512 787
17-03-17 19:27:39.178 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:27:39.218 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:27:39.218 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:27:39.218 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:39.218 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:27:39.218 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:27:39.218 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:39.228 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:27:39.228 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:27:39.228 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:27:39.228 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:27:39.378 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:27:39.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:27:39.378 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:27:39.378 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:27:39.378 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 19:27:39.378 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:27:39.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:27:39.378 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:27:39.378 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:27:39.378 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 19:27:39.568 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:27:39.568 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:27:39.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37512 150' command took 2 ms to send, 1322 ms to get response, and 1329 ms overall
17-03-17 19:27:39.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:27:39.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.170914022627503. ------
17-03-17 19:27:39.568 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:39.568 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17734 mm
17-03-17 19:27:39.568 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:27:39.578 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:39.578 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:27:39.578 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:27:39.578 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38740, sync = True, waitForSettling = False)
17-03-17 19:27:39.578 -07 000000561 INF: Z Motor: Moving to -0.177340 mm, started at -0.170914 mm, distance = -6.43 um
17-03-17 19:27:39.578 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:27:39.578 -07 000000462 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 19:27:39.588 -07 000000561 INF: FPGA: Xmit ZDACW 38740\n [Z Motor]
17-03-17 19:27:39.588 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:27:39.598 -07 000000561 INF: FPGA: 'ZDACW 38740' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:27:39.598 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:39.598 -07 000000475 INF: FPGA: Recv ZDACR 38740
17-03-17 19:27:39.608 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:39.608 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:39.608 -07 000000561 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 19:27:39.608 -07 000000626 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:27:39.618 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-17 19:27:39.618 -07 000000462 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:39.618 -07 000000462 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:27:39.618 -07 000000462 INF: Y Motor: Moving 1340 steps-16
17-03-17 19:27:39.618 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:27:39.758 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:27:39.758 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:27:39.758 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:39.758 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:27:39.758 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:27:39.758 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:39.758 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:27:39.768 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:27:39.768 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:27:39.768 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:27:39.778 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:27:39.778 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 205 ms overall
17-03-17 19:27:39.988 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 19:27:39.988 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 19:27:40.048 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:40.048 -07 000000012 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:27:40.058 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:27:40.058 -07 000000462 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:40.058 -07 000000462 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 19:27:40.058 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.216 mm/sec
17-03-17 19:27:40.288 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.988112,
17-03-17 19:27:41.008 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:41.008 -07 000000626 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:27:41.018 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:27:41.018 -07 000000462 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:41.028 -07 000000462 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:27:41.028 -07 000000462 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:27:41.028 -07 000000462 INF: Y Motor: Moved to 64.0576 after 1451 ms (table move)
17-03-17 19:27:41.038 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177340 mm (DAC = 38740)
17-03-17 19:27:41.038 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:41.038 -07 000000626 INF: FPGA: Recv ZSGSRD 36902
17-03-17 19:27:41.048 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:27:41.048 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:41.048 -07 000000475 INF: FPGA: Recv ZSGSRD 36895
17-03-17 19:27:41.058 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:41.058 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:41.058 -07 000000569 INF: FPGA: Recv ZSGSRD 36902
17-03-17 19:27:41.068 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:41.068 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:41.068 -07 000000569 INF: FPGA: Recv ZSGSRD 36886
17-03-17 19:27:41.078 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:41.078 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:41.078 -07 000000569 INF: FPGA: Recv ZSGSRD 36892
17-03-17 19:27:41.088 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:41.088 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:41.088 -07 000000626 INF: FPGA: Recv ZSGSRD 36901
17-03-17 19:27:41.098 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:41.098 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:41.098 -07 000000431 INF: FPGA: Recv ZSGSRD 36886
17-03-17 19:27:41.108 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:41.108 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:41.108 -07 000000431 INF: FPGA: Recv ZSGSRD 36898
17-03-17 19:27:41.118 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:41.118 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:41.118 -07 000000475 INF: FPGA: Recv ZSGSRD 36901
17-03-17 19:27:41.128 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:41.128 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:41.128 -07 000000593 INF: FPGA: Recv ZSGSRD 36901
17-03-17 19:27:41.138 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:41.138 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:41.138 -07 000000475 INF: FPGA: Recv ZPIEZORD 33259
17-03-17 19:27:41.148 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:41.148 -07 000000608 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.911 V. Piezo Error = -8.1 V.
17-03-17 19:27:41.148 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36896 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36900 (-176.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36886 (-176.4 uncal um), Max = 36902 (-176.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:27:41.148 -07 000000608 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36896, posNoise = 6, negNoise = 10
17-03-17 19:27:41.148 -07 000000608 INF: Z Motor: After move to -0.177340, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:41.148 -07 000000608 INF: Z Motor: Settle wait time = 1458 ms, measure time = 107 ms (allowed 150 ms), total time = 1565 ms
17-03-17 19:27:41.148 -07 000000608 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:27:41.198 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-17 19:27:41.198 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:27:41.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:41.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:41.198 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:41.198 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:41.198 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:27:41.198 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:41.198 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:27:41.198 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:27:41.208 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:27:41.208 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:27:41.208 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:27:41.208 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:27:41.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:27:41.258 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:27:41.458 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:27:41.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:27:41.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:27:41.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2807500560, 0x0, 559484976) start.
17-03-17 19:27:41.498 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:27:41.498 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 19:27:41.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:27:41.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2807500560, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:27:41.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:41.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:27:41.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:27:41.598 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:41.598 -07 000000626 INF: Autofocus start
17-03-17 19:27:41.598 -07 000000626 INF: MeasureProfile start
17-03-17 19:27:41.598 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:41.608 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:27:41.608 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:27:41.618 -07 000000626 INF: MeasureProfile done
17-03-17 19:27:41.618 -07 000000626 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:27:41.618 -07 000000626 INF: Autofocus finished
17-03-17 19:27:41.688 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:27:41.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:27:41.808 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:27:41.808 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:27:41.808 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.177351083193547. ----------
17-03-17 19:27:41.818 -07 000000610 INF: Cycle	26	Tile	6	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:27:41.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37255, sync = True, waitForSettling = True)
17-03-17 19:27:41.818 -07 000000610 INF: Z Motor: Moving to -0.170542 mm, started at -0.177351 mm, distance = 6.81 um
17-03-17 19:27:41.818 -07 000000610 INF: FPGA: Xmit ZDACW 37255\n [Z Motor]
17-03-17 19:27:41.818 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:27:41.828 -07 000000610 INF: FPGA: 'ZDACW 37255' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:27:41.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:41.828 -07 000000431 INF: FPGA: Recv ZDACR 37255
17-03-17 19:27:41.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:41.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:27:41.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:41.988 -07 000000462 INF: FPGA: Recv ZSGSRD 35839
17-03-17 19:27:41.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:27:41.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:41.998 -07 000000626 INF: FPGA: Recv ZSGSRD 35843
17-03-17 19:27:42.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:42.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:42.008 -07 000000462 INF: FPGA: Recv ZSGSRD 35838
17-03-17 19:27:42.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:42.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:42.018 -07 000000475 INF: FPGA: Recv ZSGSRD 35839
17-03-17 19:27:42.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:42.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:42.028 -07 000000462 INF: FPGA: Recv ZSGSRD 35831
17-03-17 19:27:42.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:42.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:42.038 -07 000000569 INF: FPGA: Recv ZSGSRD 35841
17-03-17 19:27:42.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:42.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:42.048 -07 000000626 INF: FPGA: Recv ZSGSRD 35838
17-03-17 19:27:42.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:42.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:42.058 -07 000000431 INF: FPGA: Recv ZSGSRD 35835
17-03-17 19:27:42.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:42.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:42.068 -07 000000462 INF: FPGA: Recv ZSGSRD 35841
17-03-17 19:27:42.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:42.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:42.078 -07 000000462 INF: FPGA: Recv ZSGSRD 35835
17-03-17 19:27:42.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:42.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:42.088 -07 000000569 INF: FPGA: Recv ZPIEZORD 31861
17-03-17 19:27:42.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:42.098 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.685 V. Piezo Error = -8.8 V.
17-03-17 19:27:42.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35838 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35838 (-169.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35831 (-169.6 uncal um), Max = 35843 (-169.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:27:42.098 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35838, posNoise = 5, negNoise = 7
17-03-17 19:27:42.098 -07 000000610 INF: Z Motor: After move to -0.170542, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:42.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:27:42.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:42.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:42.108 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:42.108 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:42.108 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:27:42.108 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:42.108 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:27:42.108 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:27:42.108 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:27:42.108 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:27:42.108 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:27:42.108 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:27:42.108 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:27:42.108 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:27:42.108 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:27:42.108 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:27:42.118 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:27:42.118 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:27:42.118 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:27:42.118 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:27:42.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37432 150\n [Camera]
17-03-17 19:27:42.318 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:27:42.728 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:27:42.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:27:42.728 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:27:42.728 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:27:42.728 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2862809304, 0x0, 391868352) start.
17-03-17 19:27:42.728 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:27:42.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:27:42.728 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:27:42.728 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:27:42.728 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2898231568, 0x0, 418435064) start.
17-03-17 19:27:42.918 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37432 787
17-03-17 19:27:43.068 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:27:43.108 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2862809304, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:27:43.108 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:27:43.108 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:43.108 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:27:43.108 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:27:43.108 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2898231568, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:27:43.108 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:27:43.108 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:43.118 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:27:43.118 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:27:43.258 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:27:43.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:27:43.258 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:27:43.438 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:27:43.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:27:43.438 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:27:43.438 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:27:43.438 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-17 19:27:43.448 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:27:43.448 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:27:43.448 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:27:43.448 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:27:43.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37432 150' command took 2 ms to send, 1326 ms to get response, and 1329 ms overall
17-03-17 19:27:43.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:27:43.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.170554266747564. ------
17-03-17 19:27:43.458 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:43.458 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17712 mm
17-03-17 19:27:43.458 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:27:43.458 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:43.468 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:27:43.468 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:27:43.468 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38691, sync = True, waitForSettling = False)
17-03-17 19:27:43.468 -07 000000431 INF: Z Motor: Moving to -0.177116 mm, started at -0.170554 mm, distance = -6.56 um
17-03-17 19:27:43.468 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:27:43.468 -07 000000429 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 19:27:43.478 -07 000000431 INF: FPGA: Xmit ZDACW 38691\n [Z Motor]
17-03-17 19:27:43.478 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:27:43.488 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:43.488 -07 000000431 INF: FPGA: 'ZDACW 38691' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:27:43.488 -07 000000475 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:27:43.498 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:27:43.498 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:43.498 -07 000000429 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:43.498 -07 000000429 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:27:43.498 -07 000000429 INF: Y Motor: Moving 1336 steps-11
17-03-17 19:27:43.498 -07 000000462 INF: FPGA: Recv ZDACR 38691
17-03-17 19:27:43.508 -07 000000431 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:27:43.508 -07 000000431 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 19:27:43.508 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:27:43.668 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:27:43.668 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:27:43.818 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:27:43.818 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:27:43.818 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:43.828 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:27:43.828 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:27:43.828 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:27:43.828 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:43.828 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:27:43.828 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 570 ms.
17-03-17 19:27:43.828 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:27:43.878 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 19:27:43.888 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 386 ms overall
17-03-17 19:27:43.918 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:43.928 -07 000000478 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:27:43.928 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:27:43.928 -07 000000429 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:43.928 -07 000000429 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:27:43.928 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.835 mm, average velocity = 2.158 mm/sec
17-03-17 19:27:44.878 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:44.878 -07 000000462 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:27:44.888 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:44.888 -07 000000429 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:44.908 -07 000000429 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:27:44.908 -07 000000429 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:27:44.908 -07 000000429 INF: Y Motor: Moved to 64.8794 after 1441 ms (table move)
17-03-17 19:27:44.908 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177116 mm (DAC = 38691)
17-03-17 19:27:44.908 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:44.908 -07 000000431 INF: FPGA: Recv ZSGSRD 36863
17-03-17 19:27:44.918 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:27:44.918 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:44.918 -07 000000462 INF: FPGA: Recv ZSGSRD 36853
17-03-17 19:27:44.928 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:44.928 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:44.928 -07 000000551 INF: FPGA: Recv ZSGSRD 36852
17-03-17 19:27:44.938 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:27:44.938 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:44.938 -07 000000627 INF: FPGA: Recv ZSGSRD 36857
17-03-17 19:27:44.948 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:44.948 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:44.948 -07 000000569 INF: FPGA: Recv ZSGSRD 36865
17-03-17 19:27:44.958 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:44.958 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:44.958 -07 000000429 INF: FPGA: Recv ZSGSRD 36870
17-03-17 19:27:44.968 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:44.968 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:44.968 -07 000000541 INF: FPGA: Recv ZSGSRD 36863
17-03-17 19:27:44.978 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:44.978 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:44.978 -07 000000501 INF: FPGA: Recv ZSGSRD 36855
17-03-17 19:27:44.988 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:44.988 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:44.988 -07 000000608 INF: FPGA: Recv ZSGSRD 36856
17-03-17 19:27:44.998 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:44.998 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:44.998 -07 000000429 INF: FPGA: Recv ZSGSRD 36862
17-03-17 19:27:45.008 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:45.008 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:45.008 -07 000000541 INF: FPGA: Recv ZPIEZORD 33208
17-03-17 19:27:45.018 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:45.018 -07 000000502 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.904 V. Piezo Error = -8.1 V.
17-03-17 19:27:45.018 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36860 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36860 (-176.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36852 (-176.2 uncal um), Max = 36870 (-176.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:27:45.018 -07 000000502 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36860, posNoise = 10, negNoise = 8
17-03-17 19:27:45.018 -07 000000502 INF: Z Motor: After move to -0.177116, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:45.018 -07 000000502 INF: Z Motor: Settle wait time = 1445 ms, measure time = 104 ms (allowed 150 ms), total time = 1549 ms
17-03-17 19:27:45.018 -07 000000502 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:27:45.068 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 19:27:45.068 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:27:45.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:45.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:45.068 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:45.068 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:45.068 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:27:45.068 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:45.078 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:27:45.078 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:27:45.078 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:27:45.078 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:27:45.088 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:27:45.088 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:27:45.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:27:45.128 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:27:45.328 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:27:45.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:27:45.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:27:45.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 19:27:45.368 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:27:45.368 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:27:45.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 19:27:45.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 19:27:45.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:45.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:27:45.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 19:27:45.568 -07 000000438 INF: Autofocus start
17-03-17 19:27:45.568 -07 000000438 INF: MeasureProfile start
17-03-17 19:27:45.568 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:45.568 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:45.578 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:27:45.578 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:27:45.578 -07 000000438 INF: MeasureProfile done
17-03-17 19:27:45.578 -07 000000438 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:27:45.578 -07 000000438 INF: Autofocus finished
17-03-17 19:27:45.648 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.009895,
17-03-17 19:27:45.778 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:27:45.778 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:27:45.778 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.177119811556444. ----------
17-03-17 19:27:45.778 -07 000000610 INF: Cycle	26	Tile	7	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:27:45.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37188, sync = True, waitForSettling = True)
17-03-17 19:27:45.788 -07 000000610 INF: Z Motor: Moving to -0.170236 mm, started at -0.177120 mm, distance = 6.88 um
17-03-17 19:27:45.788 -07 000000610 INF: FPGA: Xmit ZDACW 37188\n [Z Motor]
17-03-17 19:27:45.788 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:27:45.798 -07 000000610 INF: FPGA: 'ZDACW 37188' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:27:45.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:45.798 -07 000000478 INF: FPGA: Recv ZDACR 37188
17-03-17 19:27:45.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:45.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:27:45.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:45.958 -07 000000569 INF: FPGA: Recv ZSGSRD 35796
17-03-17 19:27:45.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:27:45.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:45.968 -07 000000626 INF: FPGA: Recv ZSGSRD 35788
17-03-17 19:27:45.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:45.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:45.978 -07 000000429 INF: FPGA: Recv ZSGSRD 35785
17-03-17 19:27:45.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:45.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:45.988 -07 000000569 INF: FPGA: Recv ZSGSRD 35794
17-03-17 19:27:45.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:45.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:45.998 -07 000000429 INF: FPGA: Recv ZSGSRD 35782
17-03-17 19:27:46.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:46.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:46.008 -07 000000478 INF: FPGA: Recv ZSGSRD 35794
17-03-17 19:27:46.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:46.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:46.018 -07 000000569 INF: FPGA: Recv ZSGSRD 35786
17-03-17 19:27:46.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:46.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:46.028 -07 000000502 INF: FPGA: Recv ZSGSRD 35791
17-03-17 19:27:46.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:46.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:46.038 -07 000000429 INF: FPGA: Recv ZSGSRD 35794
17-03-17 19:27:46.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:46.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:46.048 -07 000000478 INF: FPGA: Recv ZSGSRD 35789
17-03-17 19:27:46.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:46.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:46.058 -07 000000569 INF: FPGA: Recv ZPIEZORD 31744
17-03-17 19:27:46.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:46.068 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.675 V. Piezo Error = -8.9 V.
17-03-17 19:27:46.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35790 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35790 (-169.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35782 (-169.3 uncal um), Max = 35796 (-169.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:27:46.068 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35790, posNoise = 6, negNoise = 8
17-03-17 19:27:46.068 -07 000000610 INF: Z Motor: After move to -0.170236, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:46.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:27:46.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:46.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:46.068 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:46.068 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:46.068 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:27:46.068 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:46.068 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:27:46.068 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:27:46.068 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:27:46.078 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:27:46.078 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:27:46.078 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:27:46.078 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:27:46.078 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:27:46.078 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:27:46.078 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:27:46.088 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:27:46.088 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:27:46.088 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 19:27:46.088 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:27:46.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37365 150\n [Camera]
17-03-17 19:27:46.288 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:27:46.688 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:27:46.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:27:46.698 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:27:46.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:27:46.698 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:27:46.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:27:46.698 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:27:46.698 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:27:46.708 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:27:46.708 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-17 19:27:46.708 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:27:46.708 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 19:27:46.888 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37365 787
17-03-17 19:27:47.038 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:27:47.078 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 19:27:47.078 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 19:27:47.078 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:47.078 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 19:27:47.078 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 19:27:47.078 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:47.078 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:27:47.078 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:27:47.088 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:27:47.088 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:27:47.228 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:27:47.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:27:47.228 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:27:47.348 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:27:47.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:27:47.358 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:27:47.358 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:27:47.358 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:27:47.358 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:27:47.358 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) start.
17-03-17 19:27:47.428 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:27:47.428 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:27:47.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37365 150' command took 2 ms to send, 1321 ms to get response, and 1332 ms overall
17-03-17 19:27:47.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:27:47.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.17024590456476. ------
17-03-17 19:27:47.428 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17680 mm
17-03-17 19:27:47.428 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:27:47.428 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:47.438 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:27:47.438 -07 000000623 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 19:27:47.438 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38622, sync = True, waitForSettling = False)
17-03-17 19:27:47.438 -07 000000593 INF: Z Motor: Moving to -0.176800 mm, started at -0.170246 mm, distance = -6.55 um
17-03-17 19:27:47.438 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:47.438 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 19:27:47.438 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:47.438 -07 000000626 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:27:47.448 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:47.448 -07 000000623 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:47.448 -07 000000593 INF: FPGA: Xmit ZDACW 38622\n [Z Motor]
17-03-17 19:27:47.448 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:27:47.448 -07 000000623 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:27:47.448 -07 000000623 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:27:47.458 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:27:47.458 -07 000000593 INF: FPGA: 'ZDACW 38622' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:27:47.468 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:27:47.478 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:47.478 -07 000000626 INF: FPGA: Recv ZDACR 38622
17-03-17 19:27:47.488 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:27:47.488 -07 000000593 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 19:27:47.658 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:27:47.658 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 19:27:47.738 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:27:47.738 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:27:47.738 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:27:47.738 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:47.738 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:27:47.738 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:47.748 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:27:47.748 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 19:27:47.748 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:27:47.748 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:27:47.838 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 19:27:47.838 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 19:27:47.878 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:47.888 -07 000000569 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:27:47.888 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 19:27:47.888 -07 000000623 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:47.888 -07 000000623 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:27:47.888 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.843 mm, average velocity = 2.151 mm/sec
17-03-17 19:27:48.838 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:48.838 -07 000000512 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:27:48.848 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:48.848 -07 000000623 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:48.868 -07 000000623 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:27:48.868 -07 000000623 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:27:48.868 -07 000000623 INF: Y Motor: Moved to 65.7148 after 1432 ms (table move)
17-03-17 19:27:48.868 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176800 mm (DAC = 38622)
17-03-17 19:27:48.868 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:48.878 -07 000000623 INF: FPGA: Recv ZSGSRD 36814
17-03-17 19:27:48.878 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:27:48.878 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:48.878 -07 000000626 INF: FPGA: Recv ZSGSRD 36813
17-03-17 19:27:48.888 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:48.888 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:48.888 -07 000000626 INF: FPGA: Recv ZSGSRD 36807
17-03-17 19:27:48.898 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:48.898 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:48.898 -07 000000626 INF: FPGA: Recv ZSGSRD 36811
17-03-17 19:27:48.908 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:48.908 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:48.908 -07 000000512 INF: FPGA: Recv ZSGSRD 36816
17-03-17 19:27:48.918 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:48.918 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:48.918 -07 000000502 INF: FPGA: Recv ZSGSRD 36817
17-03-17 19:27:48.928 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:48.928 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:48.928 -07 000000502 INF: FPGA: Recv ZSGSRD 36808
17-03-17 19:27:48.938 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:48.938 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:48.938 -07 000000502 INF: FPGA: Recv ZSGSRD 36811
17-03-17 19:27:48.948 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:48.948 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:48.948 -07 000000569 INF: FPGA: Recv ZSGSRD 36807
17-03-17 19:27:48.958 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:48.958 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:48.958 -07 000000569 INF: FPGA: Recv ZSGSRD 36812
17-03-17 19:27:48.968 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:48.968 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:48.968 -07 000000501 INF: FPGA: Recv ZPIEZORD 33140
17-03-17 19:27:48.978 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:48.978 -07 000000012 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.893 V. Piezo Error = -8.1 V.
17-03-17 19:27:48.978 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36812 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36812 (-175.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36807 (-175.9 uncal um), Max = 36817 (-176.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:27:48.978 -07 000000012 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36812, posNoise = 5, negNoise = 5
17-03-17 19:27:48.978 -07 000000012 INF: Z Motor: After move to -0.176800, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:48.978 -07 000000012 INF: Z Motor: Settle wait time = 1436 ms, measure time = 104 ms (allowed 150 ms), total time = 1540 ms
17-03-17 19:27:48.978 -07 000000012 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:27:49.028 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 19:27:49.028 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:27:49.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:49.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:49.028 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:49.028 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:27:49.028 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:49.028 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:49.028 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:27:49.028 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:27:49.038 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:27:49.038 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:27:49.038 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:27:49.038 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:27:49.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:27:49.088 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:27:49.288 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:27:49.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:27:49.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:27:49.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 19:27:49.328 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:27:49.328 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 19:27:49.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 19:27:49.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:27:49.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:49.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:27:49.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:27:49.428 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:49.428 -07 000000502 INF: Autofocus start
17-03-17 19:27:49.428 -07 000000502 INF: MeasureProfile start
17-03-17 19:27:49.428 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:49.438 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:27:49.438 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:27:49.438 -07 000000502 INF: MeasureProfile done
17-03-17 19:27:49.438 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:27:49.438 -07 000000502 INF: Autofocus finished
17-03-17 19:27:49.638 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:27:49.638 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:27:49.638 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.176811449373639. ----------
17-03-17 19:27:49.648 -07 000000610 INF: Cycle	26	Tile	8	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:27:49.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37137, sync = True, waitForSettling = True)
17-03-17 19:27:49.648 -07 000000610 INF: Z Motor: Moving to -0.170002 mm, started at -0.176811 mm, distance = 6.81 um
17-03-17 19:27:49.648 -07 000000610 INF: FPGA: Xmit ZDACW 37137\n [Z Motor]
17-03-17 19:27:49.648 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:27:49.658 -07 000000610 INF: FPGA: 'ZDACW 37137' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:27:49.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:49.658 -07 000000502 INF: FPGA: Recv ZDACR 37137
17-03-17 19:27:49.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:49.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:27:49.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:49.818 -07 000000541 INF: FPGA: Recv ZSGSRD 35743
17-03-17 19:27:49.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:27:49.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:49.828 -07 000000502 INF: FPGA: Recv ZSGSRD 35755
17-03-17 19:27:49.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:49.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:49.838 -07 000000502 INF: FPGA: Recv ZSGSRD 35754
17-03-17 19:27:49.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:49.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:49.848 -07 000000502 INF: FPGA: Recv ZSGSRD 35754
17-03-17 19:27:49.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:49.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:49.858 -07 000000626 INF: FPGA: Recv ZSGSRD 35753
17-03-17 19:27:49.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:49.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:49.868 -07 000000626 INF: FPGA: Recv ZSGSRD 35751
17-03-17 19:27:49.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:49.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:49.878 -07 000000478 INF: FPGA: Recv ZSGSRD 35758
17-03-17 19:27:49.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:49.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:49.888 -07 000000626 INF: FPGA: Recv ZSGSRD 35756
17-03-17 19:27:49.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:49.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:49.898 -07 000000478 INF: FPGA: Recv ZSGSRD 35750
17-03-17 19:27:49.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:49.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:49.908 -07 000000478 INF: FPGA: Recv ZSGSRD 35758
17-03-17 19:27:49.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:49.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:49.918 -07 000000478 INF: FPGA: Recv ZPIEZORD 31732
17-03-17 19:27:49.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:49.928 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.667 V. Piezo Error = -8.9 V.
17-03-17 19:27:49.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35753 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35754 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35743 (-169.1 uncal um), Max = 35758 (-169.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:27:49.928 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35753, posNoise = 5, negNoise = 10
17-03-17 19:27:49.928 -07 000000610 INF: Z Motor: After move to -0.170002, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:49.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:27:49.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:49.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:49.928 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:49.928 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:49.928 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:27:49.928 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:27:49.928 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:27:49.928 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:49.938 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:27:49.938 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:27:49.938 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:27:49.938 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:27:49.938 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:27:49.938 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:27:49.938 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:27:49.938 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:27:49.948 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:27:49.948 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:27:49.948 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:27:49.948 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:27:49.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37314 150\n [Camera]
17-03-17 19:27:50.148 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:27:50.548 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:27:50.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:27:50.558 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:27:50.558 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:27:50.558 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:27:50.928 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 19:27:50.928 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 19:27:50.928 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:50.928 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:27:50.928 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:27:50.948 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:27:50.948 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37314 787
17-03-17 19:27:50.948 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:27:50.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:27:50.948 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:27:50.948 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:27:50.948 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:27:51.328 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:27:51.328 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:27:51.328 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:51.328 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:27:51.338 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:27:51.528 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:27:51.528 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:27:51.528 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:27:51.528 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:27:51.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37314 150' command took 2 ms to send, 1571 ms to get response, and 1574 ms overall
17-03-17 19:27:51.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:27:51.528 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.019446,
17-03-17 19:27:51.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:27:51.528 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:27:51.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:27:51.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.170008208715514. ------
17-03-17 19:27:51.648 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:27:51.648 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:27:52.028 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:27:52.028 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:27:52.028 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:52.028 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:27:52.028 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 19:27:52.038 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:27:52.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:27:52.038 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:27:52.038 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17629 mm
17-03-17 19:27:52.038 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:27:52.048 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:52.048 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:27:52.048 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2567016040, 0x0, 418435064) start.
17-03-17 19:27:52.048 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:27:52.048 -07 000000462 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 19:27:52.048 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38510, sync = True, waitForSettling = False)
17-03-17 19:27:52.048 -07 000000627 INF: Z Motor: Moving to -0.176287 mm, started at -0.170008 mm, distance = -6.28 um
17-03-17 19:27:52.048 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:52.058 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:27:52.058 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:52.058 -07 000000551 INF: FPGA: Recv YRDPOS 134585
17-03-17 19:27:52.068 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:27:52.068 -07 000000462 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:52.068 -07 000000462 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:27:52.068 -07 000000462 INF: Y Motor: Moving 1340 steps-16
17-03-17 19:27:52.078 -07 000000627 INF: FPGA: Xmit ZDACW 38510\n [Z Motor]
17-03-17 19:27:52.078 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:27:52.088 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:27:52.088 -07 000000627 INF: FPGA: 'ZDACW 38510' command took 0 ms to send, 0 ms to get response, and 38 ms overall
17-03-17 19:27:52.098 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:27:52.118 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:52.118 -07 000000626 INF: FPGA: Recv ZDACR 38510
17-03-17 19:27:52.128 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 19:27:52.128 -07 000000627 INF: Z Motor: MoveAbsStepped took 78 ms (did NOT wait for settling yet))
17-03-17 19:27:52.288 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:27:52.288 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 19:27:52.418 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2567016040, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:27:52.418 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:27:52.418 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:52.418 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:27:52.428 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:27:52.468 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 19:27:52.468 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 399 ms overall
17-03-17 19:27:52.528 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:52.528 -07 000000626 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:27:52.538 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:27:52.538 -07 000000462 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:52.538 -07 000000462 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:27:52.538 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.094 mm/sec
17-03-17 19:27:53.488 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:53.488 -07 000000551 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:27:53.498 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:53.498 -07 000000462 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:53.518 -07 000000462 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:27:53.518 -07 000000462 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:27:53.518 -07 000000462 INF: Y Motor: Moved to 66.5400 after 1473 ms (table move)
17-03-17 19:27:53.518 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176287 mm (DAC = 38510)
17-03-17 19:27:53.518 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:53.528 -07 000000626 INF: FPGA: Recv ZSGSRD 36732
17-03-17 19:27:53.528 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 19:27:53.528 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:53.528 -07 000000462 INF: FPGA: Recv ZSGSRD 36723
17-03-17 19:27:53.538 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:27:53.538 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:53.538 -07 000000551 INF: FPGA: Recv ZSGSRD 36731
17-03-17 19:27:53.548 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:53.548 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:53.548 -07 000000431 INF: FPGA: Recv ZSGSRD 36735
17-03-17 19:27:53.558 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:53.558 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:54.528 -07 000000627 INF: FPGA: Recv ZSGSRD 36731
17-03-17 19:27:54.528 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 960 ms to get response, and 970 ms overall
17-03-17 19:27:54.528 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:54.528 -07 000000626 INF: FPGA: Recv ZSGSRD 36740
17-03-17 19:27:54.538 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:54.538 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:54.538 -07 000000431 INF: FPGA: Recv ZSGSRD 36732
17-03-17 19:27:54.548 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:54.548 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:54.548 -07 000000626 INF: FPGA: Recv ZSGSRD 36730
17-03-17 19:27:54.558 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:54.558 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:54.558 -07 000000431 INF: FPGA: Recv ZSGSRD 36734
17-03-17 19:27:54.568 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:54.568 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:54.568 -07 000000475 INF: FPGA: Recv ZSGSRD 36737
17-03-17 19:27:54.578 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:54.578 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:54.578 -07 000000627 INF: FPGA: Recv ZPIEZORD 33005
17-03-17 19:27:54.588 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:54.588 -07 000000438 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.876 V. Piezo Error = -8.3 V.
17-03-17 19:27:54.588 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36732 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36732 (-175.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36723 (-175.3 uncal um), Max = 36740 (-175.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:27:54.588 -07 000000438 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36732, posNoise = 8, negNoise = 9
17-03-17 19:27:54.588 -07 000000438 INF: Z Motor: After move to -0.176287, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:54.588 -07 000000438 INF: Z Motor: Settle wait time = 1475 ms, measure time = 1064 ms (allowed 150 ms), total time = 2539 ms
17-03-17 19:27:54.588 -07 000000438 INF: Z Motor: Warning: Actual position measuring time = 1064 ms, longer than max expected time of 150 ms
17-03-17 19:27:54.588 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2544 ms
17-03-17 19:27:54.588 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:27:54.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:54.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:54.588 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:54.588 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:54.588 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:27:54.588 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:54.588 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:27:54.588 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:27:54.598 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:27:54.598 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:27:54.608 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 19:27:54.608 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:27:54.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:27:54.658 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:27:54.848 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:27:54.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:27:54.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:27:54.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) start.
17-03-17 19:27:54.888 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:27:54.888 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 19:27:54.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 19:27:54.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:27:54.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:54.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:27:54.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:27:54.988 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:54.988 -07 000000608 INF: Autofocus start
17-03-17 19:27:54.988 -07 000000608 INF: MeasureProfile start
17-03-17 19:27:54.988 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:54.998 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:27:54.998 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:27:54.998 -07 000000608 INF: MeasureProfile done
17-03-17 19:27:54.998 -07 000000608 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:27:54.998 -07 000000608 INF: Autofocus finished
17-03-17 19:27:55.198 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:27:55.198 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 19:27:55.198 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.176297512402298. ----------
17-03-17 19:27:55.198 -07 000000610 INF: Cycle	26	Tile	9	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:27:55.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37025, sync = True, waitForSettling = True)
17-03-17 19:27:55.208 -07 000000610 INF: Z Motor: Moving to -0.169490 mm, started at -0.176298 mm, distance = 6.81 um
17-03-17 19:27:55.208 -07 000000610 INF: FPGA: Xmit ZDACW 37025\n [Z Motor]
17-03-17 19:27:55.208 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:27:55.218 -07 000000610 INF: FPGA: 'ZDACW 37025' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:27:55.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:55.218 -07 000000627 INF: FPGA: Recv ZDACR 37025
17-03-17 19:27:55.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:55.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:27:55.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:55.378 -07 000000438 INF: FPGA: Recv ZSGSRD 35674
17-03-17 19:27:55.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:27:55.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:55.388 -07 000000462 INF: FPGA: Recv ZSGSRD 35678
17-03-17 19:27:55.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:55.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:55.398 -07 000000438 INF: FPGA: Recv ZSGSRD 35666
17-03-17 19:27:55.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:55.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:55.408 -07 000000462 INF: FPGA: Recv ZSGSRD 35676
17-03-17 19:27:55.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:55.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:55.418 -07 000000626 INF: FPGA: Recv ZSGSRD 35672
17-03-17 19:27:55.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:55.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:55.428 -07 000000462 INF: FPGA: Recv ZSGSRD 35680
17-03-17 19:27:55.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:55.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:55.438 -07 000000438 INF: FPGA: Recv ZSGSRD 35676
17-03-17 19:27:55.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:55.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:55.448 -07 000000626 INF: FPGA: Recv ZSGSRD 35670
17-03-17 19:27:55.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:55.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:55.458 -07 000000438 INF: FPGA: Recv ZSGSRD 35677
17-03-17 19:27:55.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:55.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:55.468 -07 000000431 INF: FPGA: Recv ZSGSRD 35669
17-03-17 19:27:55.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:55.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:55.478 -07 000000462 INF: FPGA: Recv ZPIEZORD 31602
17-03-17 19:27:55.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:55.488 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -9.0 V.
17-03-17 19:27:55.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35674 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35675 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35666 (-168.6 uncal um), Max = 35680 (-168.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:27:55.488 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35674, posNoise = 6, negNoise = 8
17-03-17 19:27:55.488 -07 000000610 INF: Z Motor: After move to -0.169490, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:55.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:27:55.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:55.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:55.488 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:55.488 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:55.488 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:27:55.488 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:55.488 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:27:55.488 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:27:55.488 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:27:55.488 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:27:55.488 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:27:55.488 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:27:55.498 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:27:55.498 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:27:55.498 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:27:55.498 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:27:55.508 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:27:55.508 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:27:55.508 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:27:55.508 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:27:55.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37202 150\n [Camera]
17-03-17 19:27:55.708 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:27:56.118 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:27:56.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:27:56.118 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:27:56.118 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:27:56.118 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:27:56.118 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:27:56.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:27:56.118 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:27:56.118 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:27:56.118 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:27:56.308 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37202 787
17-03-17 19:27:56.458 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:27:56.488 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:27:56.488 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:27:56.488 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:56.498 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:27:56.498 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:27:56.498 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:56.498 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:27:56.498 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:27:56.498 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:27:56.498 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:27:56.648 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:27:56.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:27:56.648 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:27:56.758 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:27:56.758 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:27:56.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:27:56.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:27:56.768 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:27:56.768 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:27:56.768 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:27:56.768 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:27:56.768 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:27:56.838 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:27:56.838 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:27:56.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37202 150' command took 2 ms to send, 1319 ms to get response, and 1329 ms overall
17-03-17 19:27:56.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:27:56.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.169500695956315. ------
17-03-17 19:27:56.848 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:56.848 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17629 mm
17-03-17 19:27:56.848 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:27:56.848 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:56.848 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38511, sync = True, waitForSettling = False)
17-03-17 19:27:56.848 -07 000000627 INF: Z Motor: Moving to -0.176292 mm, started at -0.169501 mm, distance = -6.79 um
17-03-17 19:27:56.858 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:27:56.858 -07 000000561 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 19:27:56.858 -07 000000627 INF: FPGA: Xmit ZDACW 38511\n [Z Motor]
17-03-17 19:27:56.858 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:27:56.858 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:27:56.868 -07 000000627 INF: FPGA: 'ZDACW 38511' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:56.868 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:56.868 -07 000000623 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:27:56.878 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:27:56.878 -07 000000561 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:27:56.878 -07 000000561 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:56.878 -07 000000561 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:27:56.878 -07 000000561 INF: Y Motor: Moving 1348 steps-26
17-03-17 19:27:56.888 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:56.888 -07 000000593 INF: FPGA: Recv ZDACR 38511
17-03-17 19:27:56.898 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:27:56.898 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:27:56.898 -07 000000627 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 19:27:57.078 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:27:57.078 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-17 19:27:57.148 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:27:57.148 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:27:57.148 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:57.148 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:27:57.148 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:27:57.148 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:57.148 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:27:57.158 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:27:57.158 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 19:27:57.158 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:27:57.268 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:27:57.268 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:27:57.328 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:57.328 -07 000000431 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:27:57.338 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:27:57.338 -07 000000561 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:57.338 -07 000000561 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 19:27:57.338 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 19:27:57.438 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.02213,
17-03-17 19:27:58.288 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:27:58.288 -07 000000623 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:27:58.298 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:27:58.298 -07 000000561 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:27:58.318 -07 000000561 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:27:58.318 -07 000000561 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:27:58.318 -07 000000561 INF: Y Motor: Moved to 67.3726 after 1464 ms (table move)
17-03-17 19:27:58.318 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176292 mm (DAC = 38511)
17-03-17 19:27:58.318 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:58.328 -07 000000429 INF: FPGA: Recv ZSGSRD 36727
17-03-17 19:27:58.328 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 19:27:58.328 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:58.328 -07 000000569 INF: FPGA: Recv ZSGSRD 36737
17-03-17 19:27:58.338 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:27:58.338 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:58.338 -07 000000512 INF: FPGA: Recv ZSGSRD 36738
17-03-17 19:27:58.348 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:58.348 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:58.348 -07 000000512 INF: FPGA: Recv ZSGSRD 36730
17-03-17 19:27:58.358 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:58.358 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:58.358 -07 000000512 INF: FPGA: Recv ZSGSRD 36727
17-03-17 19:27:58.368 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:58.368 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:58.368 -07 000000623 INF: FPGA: Recv ZSGSRD 36732
17-03-17 19:27:58.378 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:58.378 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:58.378 -07 000000623 INF: FPGA: Recv ZSGSRD 36732
17-03-17 19:27:58.388 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:58.388 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:58.388 -07 000000627 INF: FPGA: Recv ZSGSRD 36734
17-03-17 19:27:58.398 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:58.398 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:58.398 -07 000000438 INF: FPGA: Recv ZSGSRD 36728
17-03-17 19:27:58.408 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:58.408 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:58.408 -07 000000561 INF: FPGA: Recv ZSGSRD 36730
17-03-17 19:27:58.418 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:58.418 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:58.418 -07 000000593 INF: FPGA: Recv ZPIEZORD 33054
17-03-17 19:27:58.428 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:58.428 -07 000000608 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.876 V. Piezo Error = -8.2 V.
17-03-17 19:27:58.428 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36732 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36731 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36727 (-175.4 uncal um), Max = 36738 (-175.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:27:58.428 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36732, posNoise = 6, negNoise = 5
17-03-17 19:27:58.428 -07 000000608 INF: Z Motor: After move to -0.176292, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:58.428 -07 000000608 INF: Z Motor: Settle wait time = 1467 ms, measure time = 103 ms (allowed 150 ms), total time = 1570 ms
17-03-17 19:27:58.428 -07 000000608 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:27:58.478 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-17 19:27:58.478 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:27:58.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:58.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:58.488 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:58.488 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:27:58.488 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:58.488 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:58.488 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:27:58.488 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:27:58.488 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:27:58.488 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:27:58.498 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:27:58.498 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:27:58.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:27:58.548 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:27:58.738 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:27:58.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:27:58.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:27:58.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) start.
17-03-17 19:27:58.778 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:27:58.788 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 19:27:58.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:27:58.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:27:58.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:27:58.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:27:58.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:27:58.888 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:27:58.888 -07 000000561 INF: Autofocus start
17-03-17 19:27:58.888 -07 000000561 INF: MeasureProfile start
17-03-17 19:27:58.888 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:27:58.898 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:27:58.898 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:27:58.898 -07 000000561 INF: MeasureProfile done
17-03-17 19:27:58.898 -07 000000561 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:27:58.898 -07 000000561 INF: Autofocus finished
17-03-17 19:27:59.098 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:27:59.098 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:27:59.098 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.176297512402298. ----------
17-03-17 19:27:59.098 -07 000000610 INF: Cycle	26	Tile	10	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:27:59.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37008, sync = True, waitForSettling = True)
17-03-17 19:27:59.108 -07 000000610 INF: Z Motor: Moving to -0.169412 mm, started at -0.176298 mm, distance = 6.89 um
17-03-17 19:27:59.108 -07 000000610 INF: FPGA: Xmit ZDACW 37008\n [Z Motor]
17-03-17 19:27:59.108 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:27:59.118 -07 000000610 INF: FPGA: 'ZDACW 37008' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:27:59.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:27:59.118 -07 000000561 INF: FPGA: Recv ZDACR 37008
17-03-17 19:27:59.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:59.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:27:59.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:59.278 -07 000000608 INF: FPGA: Recv ZSGSRD 35658
17-03-17 19:27:59.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:27:59.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:59.288 -07 000000438 INF: FPGA: Recv ZSGSRD 35660
17-03-17 19:27:59.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:59.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:59.298 -07 000000593 INF: FPGA: Recv ZSGSRD 35656
17-03-17 19:27:59.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:59.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:59.308 -07 000000438 INF: FPGA: Recv ZSGSRD 35653
17-03-17 19:27:59.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:59.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:59.318 -07 000000593 INF: FPGA: Recv ZSGSRD 35656
17-03-17 19:27:59.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:59.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:59.328 -07 000000438 INF: FPGA: Recv ZSGSRD 35663
17-03-17 19:27:59.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:59.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:59.338 -07 000000593 INF: FPGA: Recv ZSGSRD 35668
17-03-17 19:27:59.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:59.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:59.348 -07 000000561 INF: FPGA: Recv ZSGSRD 35664
17-03-17 19:27:59.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:59.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:59.358 -07 000000593 INF: FPGA: Recv ZSGSRD 35659
17-03-17 19:27:59.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:59.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:27:59.368 -07 000000561 INF: FPGA: Recv ZSGSRD 35666
17-03-17 19:27:59.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:59.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:27:59.378 -07 000000438 INF: FPGA: Recv ZPIEZORD 31595
17-03-17 19:27:59.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:27:59.388 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.647 V. Piezo Error = -9.0 V.
17-03-17 19:27:59.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35660 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35660 (-168.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35653 (-168.5 uncal um), Max = 35668 (-168.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:27:59.388 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35660, posNoise = 8, negNoise = 7
17-03-17 19:27:59.388 -07 000000610 INF: Z Motor: After move to -0.169412, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:27:59.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:27:59.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:27:59.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:27:59.388 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:27:59.388 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:27:59.388 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:27:59.388 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:27:59.388 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:27:59.388 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:27:59.388 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:27:59.388 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:27:59.388 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:27:59.388 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:27:59.398 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:27:59.398 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:27:59.398 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:27:59.398 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:27:59.408 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:27:59.408 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:27:59.408 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:27:59.408 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:27:59.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37185 150\n [Camera]
17-03-17 19:27:59.608 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:28:00.008 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:28:00.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:28:00.008 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:00.008 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:00.008 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:28:00.008 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:28:00.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:28:00.018 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:00.018 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:00.018 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:28:00.198 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37185 787
17-03-17 19:28:00.348 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:28:00.408 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:28:00.408 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:28:00.408 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:00.408 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 19:28:00.408 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:28:00.408 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:00.418 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:28:00.418 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:28:00.418 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:28:00.428 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:28:00.548 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:28:00.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:28:00.548 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:00.658 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:28:00.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:28:00.658 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:00.668 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:00.668 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:28:00.668 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:00.668 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:28:00.738 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:28:00.738 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:28:00.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37185 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-17 19:28:00.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:28:00.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.169410756986331. ------
17-03-17 19:28:00.738 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17522 mm
17-03-17 19:28:00.738 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:28:00.738 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:00.748 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:28:00.748 -07 000000012 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 19:28:00.748 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:00.748 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:00.748 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:28:00.748 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 38276, sync = True, waitForSettling = False)
17-03-17 19:28:00.748 -07 000000541 INF: Z Motor: Moving to -0.175216 mm, started at -0.169411 mm, distance = -5.81 um
17-03-17 19:28:00.748 -07 000000551 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:28:00.758 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:28:00.758 -07 000000012 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:00.758 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:28:00.758 -07 000000012 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:28:00.758 -07 000000012 INF: Y Motor: Moving 1343 steps-21
17-03-17 19:28:00.768 -07 000000541 INF: FPGA: Xmit ZDACW 38276\n [Z Motor]
17-03-17 19:28:00.768 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:28:00.778 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:28:00.778 -07 000000541 INF: FPGA: 'ZDACW 38276' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:28:00.788 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:00.788 -07 000000438 INF: FPGA: Recv ZDACR 38276
17-03-17 19:28:00.798 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:28:00.798 -07 000000541 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 19:28:00.958 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:28:00.958 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 19:28:01.048 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:28:01.048 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:28:01.048 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:01.058 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:28:01.058 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:28:01.058 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:01.058 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:28:01.058 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:28:01.058 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 19:28:01.068 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:28:01.148 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 19:28:01.148 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 19:28:01.188 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:01.188 -07 000000541 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:28:01.198 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:28:01.198 -07 000000012 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:01.198 -07 000000012 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:28:01.198 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.143 mm/sec
17-03-17 19:28:01.688 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:28:01.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:28:02.148 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:02.148 -07 000000512 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:28:02.158 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:02.158 -07 000000012 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:02.178 -07 000000012 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:28:02.178 -07 000000012 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:28:02.178 -07 000000012 INF: Y Motor: Moved to 68.2056 after 1430 ms (table move)
17-03-17 19:28:02.178 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175216 mm (DAC = 38276)
17-03-17 19:28:02.178 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:02.188 -07 000000551 INF: FPGA: Recv ZSGSRD 36570
17-03-17 19:28:02.188 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:28:02.188 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:02.188 -07 000000551 INF: FPGA: Recv ZSGSRD 36553
17-03-17 19:28:02.198 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:28:02.198 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:02.198 -07 000000561 INF: FPGA: Recv ZSGSRD 36572
17-03-17 19:28:02.208 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:02.208 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:02.208 -07 000000012 INF: FPGA: Recv ZSGSRD 36571
17-03-17 19:28:02.218 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:02.218 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:02.218 -07 000000438 INF: FPGA: Recv ZSGSRD 36567
17-03-17 19:28:02.228 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:02.228 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:02.228 -07 000000512 INF: FPGA: Recv ZSGSRD 36566
17-03-17 19:28:02.238 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:02.238 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:02.238 -07 000000561 INF: FPGA: Recv ZSGSRD 36564
17-03-17 19:28:02.248 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:02.248 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:02.248 -07 000000012 INF: FPGA: Recv ZSGSRD 36569
17-03-17 19:28:02.258 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:02.258 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:02.258 -07 000000541 INF: FPGA: Recv ZSGSRD 36568
17-03-17 19:28:02.268 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:02.268 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:02.268 -07 000000561 INF: FPGA: Recv ZSGSRD 36564
17-03-17 19:28:02.278 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:02.278 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:02.278 -07 000000512 INF: FPGA: Recv ZPIEZORD 32841
17-03-17 19:28:02.288 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:02.288 -07 000000593 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.841 V. Piezo Error = -8.2 V.
17-03-17 19:28:02.288 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36566 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36568 (-174.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36553 (-174.3 uncal um), Max = 36572 (-174.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 19:28:02.288 -07 000000593 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36566, posNoise = 6, negNoise = 13
17-03-17 19:28:02.288 -07 000000593 INF: Z Motor: After move to -0.175216, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:02.288 -07 000000593 INF: Z Motor: Settle wait time = 1435 ms, measure time = 103 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:28:02.288 -07 000000593 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:28:02.338 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 19:28:02.338 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:28:02.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:02.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:02.338 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:02.338 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:02.348 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:28:02.348 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:02.348 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:28:02.348 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:28:02.348 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:02.348 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:28:02.358 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:28:02.358 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:28:02.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:28:02.398 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:28:03.248 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:28:03.248 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:28:03.248 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:28:03.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:28:03.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:28:03.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 881 ms to get response, and 887 ms overall
17-03-17 19:28:03.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:28:03.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 19:28:03.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:03.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:28:03.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 19:28:03.448 -07 000000501 INF: Autofocus start
17-03-17 19:28:03.448 -07 000000501 INF: MeasureProfile start
17-03-17 19:28:03.448 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:03.448 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:03.458 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:28:03.458 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:28:03.458 -07 000000501 INF: MeasureProfile done
17-03-17 19:28:03.458 -07 000000501 INF: X=128  Z correction [um]=0.5828849
17-03-17 19:28:03.458 -07 000000501 INF: Autofocus finished
17-03-17 19:28:03.558 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.999021,
17-03-17 19:28:03.658 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:28:03.658 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:28:03.658 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.175231093186766. ----------
17-03-17 19:28:03.658 -07 000000610 INF: Cycle	26	Tile	11	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:28:03.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36916, sync = True, waitForSettling = True)
17-03-17 19:28:03.668 -07 000000610 INF: Z Motor: Moving to -0.168991 mm, started at -0.175231 mm, distance = 6.24 um
17-03-17 19:28:03.668 -07 000000610 INF: FPGA: Xmit ZDACW 36916\n [Z Motor]
17-03-17 19:28:03.668 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:28:03.678 -07 000000610 INF: FPGA: 'ZDACW 36916' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:28:03.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:03.678 -07 000000438 INF: FPGA: Recv ZDACR 36916
17-03-17 19:28:03.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:03.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:28:03.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:03.838 -07 000000593 INF: FPGA: Recv ZSGSRD 35593
17-03-17 19:28:03.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:03.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:03.848 -07 000000501 INF: FPGA: Recv ZSGSRD 35587
17-03-17 19:28:03.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:03.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:03.878 -07 000000626 INF: FPGA: Recv ZSGSRD 35596
17-03-17 19:28:03.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:28:03.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:03.888 -07 000000501 INF: FPGA: Recv ZSGSRD 35594
17-03-17 19:28:03.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:03.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:03.908 -07 000000626 INF: FPGA: Recv ZSGSRD 35598
17-03-17 19:28:03.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:28:03.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:03.918 -07 000000438 INF: FPGA: Recv ZSGSRD 35596
17-03-17 19:28:03.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:03.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:03.948 -07 000000541 INF: FPGA: Recv ZSGSRD 35592
17-03-17 19:28:03.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:28:03.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:03.958 -07 000000501 INF: FPGA: Recv ZSGSRD 35601
17-03-17 19:28:03.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:03.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:03.968 -07 000000593 INF: FPGA: Recv ZSGSRD 35596
17-03-17 19:28:03.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:03.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:03.978 -07 000000438 INF: FPGA: Recv ZSGSRD 35596
17-03-17 19:28:03.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:03.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:03.988 -07 000000551 INF: FPGA: Recv ZPIEZORD 31552
17-03-17 19:28:03.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:03.998 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -8.9 V.
17-03-17 19:28:03.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35595 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35596 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35587 (-168.1 uncal um), Max = 35601 (-168.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:28:03.998 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35595, posNoise = 6, negNoise = 8
17-03-17 19:28:03.998 -07 000000610 INF: Z Motor: After move to -0.168991, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:03.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-17 19:28:03.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:03.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:03.998 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:03.998 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:03.998 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:28:03.998 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:28:03.998 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:28:03.998 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:03.998 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:28:03.998 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:28:03.998 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:28:03.998 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:28:04.008 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:28:04.008 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:28:04.008 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:04.008 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:28:04.008 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:28:04.018 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:28:04.018 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:28:04.018 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:28:04.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37093 150\n [Camera]
17-03-17 19:28:04.218 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:28:04.618 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:28:04.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:28:04.618 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:04.618 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:04.618 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:28:04.618 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:28:04.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:28:04.618 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:04.618 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:04.618 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:28:04.808 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37093 787
17-03-17 19:28:04.958 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:28:04.998 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:28:04.998 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:28:04.998 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:04.998 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:28:04.998 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:28:04.998 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:05.008 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:28:05.008 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:28:05.008 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:28:05.018 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:28:05.148 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:28:05.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:28:05.158 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:05.268 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:28:05.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:28:05.268 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:05.278 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:05.278 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:28:05.278 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:05.278 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:28:05.348 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:28:05.348 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:28:05.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37093 150' command took 2 ms to send, 1321 ms to get response, and 1329 ms overall
17-03-17 19:28:05.348 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:28:05.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.168993183197116. ------
17-03-17 19:28:05.348 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:05.348 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17566 mm
17-03-17 19:28:05.348 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:28:05.358 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:05.358 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:28:05.358 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:28:05.358 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38373, sync = True, waitForSettling = False)
17-03-17 19:28:05.358 -07 000000626 INF: Z Motor: Moving to -0.175660 mm, started at -0.168993 mm, distance = -6.67 um
17-03-17 19:28:05.358 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:28:05.358 -07 000000501 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 19:28:05.368 -07 000000626 INF: FPGA: Xmit ZDACW 38373\n [Z Motor]
17-03-17 19:28:05.368 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:28:05.378 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:05.378 -07 000000626 INF: FPGA: 'ZDACW 38373' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:28:05.378 -07 000000623 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:28:05.388 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:28:05.388 -07 000000501 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:05.388 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:05.388 -07 000000501 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:28:05.388 -07 000000501 INF: Y Motor: Moving 1338 steps-14
17-03-17 19:28:05.388 -07 000000551 INF: FPGA: Recv ZDACR 38373
17-03-17 19:28:05.398 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:28:05.398 -07 000000626 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:28:05.398 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:28:05.558 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:28:05.558 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:28:05.668 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:28:05.668 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:28:05.668 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:05.668 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:28:05.668 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:28:05.668 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:05.668 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:28:05.668 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:28:05.668 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 19:28:05.678 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:28:05.768 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 19:28:05.768 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 19:28:05.808 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:05.808 -07 000000462 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:28:05.818 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:28:05.818 -07 000000501 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:05.818 -07 000000501 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:28:05.818 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.837 mm, average velocity = 2.185 mm/sec
17-03-17 19:28:06.688 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:28:06.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:28:06.768 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:06.768 -07 000000541 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:28:06.778 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:06.778 -07 000000501 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:06.798 -07 000000501 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:28:06.798 -07 000000501 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:28:06.798 -07 000000501 INF: Y Motor: Moved to 69.0278 after 1438 ms (table move)
17-03-17 19:28:06.798 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175660 mm (DAC = 38373)
17-03-17 19:28:06.798 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:06.798 -07 000000012 INF: FPGA: Recv ZSGSRD 36637
17-03-17 19:28:06.808 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:28:06.808 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:06.808 -07 000000623 INF: FPGA: Recv ZSGSRD 36635
17-03-17 19:28:06.818 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:06.818 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:06.818 -07 000000623 INF: FPGA: Recv ZSGSRD 36631
17-03-17 19:28:06.828 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:06.828 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:06.828 -07 000000623 INF: FPGA: Recv ZSGSRD 36627
17-03-17 19:28:06.838 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:06.838 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:06.838 -07 000000626 INF: FPGA: Recv ZSGSRD 36637
17-03-17 19:28:06.848 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:06.848 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:06.848 -07 000000626 INF: FPGA: Recv ZSGSRD 36640
17-03-17 19:28:06.858 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:06.858 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:06.858 -07 000000626 INF: FPGA: Recv ZSGSRD 36634
17-03-17 19:28:06.868 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:06.868 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:06.868 -07 000000626 INF: FPGA: Recv ZSGSRD 36629
17-03-17 19:28:06.878 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:06.878 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:06.878 -07 000000626 INF: FPGA: Recv ZSGSRD 36630
17-03-17 19:28:06.888 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:06.888 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:06.888 -07 000000626 INF: FPGA: Recv ZSGSRD 36638
17-03-17 19:28:06.898 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:06.898 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:06.898 -07 000000626 INF: FPGA: Recv ZPIEZORD 32935
17-03-17 19:28:06.908 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:06.908 -07 000000569 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.855 V. Piezo Error = -8.2 V.
17-03-17 19:28:06.908 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36634 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36634 (-174.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36627 (-174.7 uncal um), Max = 36640 (-174.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:28:06.908 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36634, posNoise = 6, negNoise = 7
17-03-17 19:28:06.908 -07 000000569 INF: Z Motor: After move to -0.175660, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:06.908 -07 000000569 INF: Z Motor: Settle wait time = 1444 ms, measure time = 103 ms (allowed 150 ms), total time = 1547 ms
17-03-17 19:28:06.908 -07 000000569 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:28:06.958 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 19:28:06.958 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:28:06.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:06.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:06.958 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:06.958 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:06.958 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:28:06.958 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:06.958 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:28:06.958 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:28:06.968 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:06.968 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:28:06.968 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:28:06.968 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:28:06.978 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:28:07.018 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:28:07.218 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:28:07.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:28:07.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:28:07.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:28:07.258 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:28:07.258 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 19:28:07.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 286 ms overall
17-03-17 19:28:07.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 19:28:07.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:07.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:28:07.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 19:28:07.458 -07 000000502 INF: Autofocus start
17-03-17 19:28:07.458 -07 000000502 INF: MeasureProfile start
17-03-17 19:28:07.458 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:07.458 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:07.468 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:28:07.468 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:28:07.468 -07 000000502 INF: MeasureProfile done
17-03-17 19:28:07.468 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:28:07.468 -07 000000502 INF: Autofocus finished
17-03-17 19:28:07.668 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:28:07.668 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:28:07.668 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.175667939612406. ----------
17-03-17 19:28:07.668 -07 000000610 INF: Cycle	26	Tile	12	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:28:07.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36888, sync = True, waitForSettling = True)
17-03-17 19:28:07.678 -07 000000610 INF: Z Motor: Moving to -0.168862 mm, started at -0.175668 mm, distance = 6.81 um
17-03-17 19:28:07.678 -07 000000610 INF: FPGA: Xmit ZDACW 36888\n [Z Motor]
17-03-17 19:28:07.678 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:28:07.688 -07 000000610 INF: FPGA: 'ZDACW 36888' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:28:07.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:07.688 -07 000000569 INF: FPGA: Recv ZDACR 36888
17-03-17 19:28:07.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:07.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:28:07.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:07.848 -07 000000012 INF: FPGA: Recv ZSGSRD 35568
17-03-17 19:28:07.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:07.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:07.858 -07 000000551 INF: FPGA: Recv ZSGSRD 35577
17-03-17 19:28:07.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:07.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:07.868 -07 000000501 INF: FPGA: Recv ZSGSRD 35578
17-03-17 19:28:07.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:07.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:07.878 -07 000000569 INF: FPGA: Recv ZSGSRD 35572
17-03-17 19:28:07.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:07.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:07.888 -07 000000501 INF: FPGA: Recv ZSGSRD 35578
17-03-17 19:28:07.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:07.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:07.898 -07 000000541 INF: FPGA: Recv ZSGSRD 35573
17-03-17 19:28:07.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:07.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:07.908 -07 000000569 INF: FPGA: Recv ZSGSRD 35582
17-03-17 19:28:07.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:07.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:07.918 -07 000000541 INF: FPGA: Recv ZSGSRD 35577
17-03-17 19:28:07.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:07.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:07.928 -07 000000501 INF: FPGA: Recv ZSGSRD 35573
17-03-17 19:28:07.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:07.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:07.938 -07 000000462 INF: FPGA: Recv ZSGSRD 35580
17-03-17 19:28:07.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:07.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:07.948 -07 000000593 INF: FPGA: Recv ZPIEZORD 31514
17-03-17 19:28:07.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:07.958 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.629 V. Piezo Error = -9.0 V.
17-03-17 19:28:07.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35576 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35577 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35568 (-167.9 uncal um), Max = 35582 (-168.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:28:07.958 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35576, posNoise = 6, negNoise = 8
17-03-17 19:28:07.958 -07 000000610 INF: Z Motor: After move to -0.168862, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:07.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:28:07.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:07.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:07.958 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:07.958 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:07.958 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:28:07.958 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:07.958 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:28:07.958 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:28:07.968 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:28:07.968 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:28:07.968 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:28:07.968 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:28:07.968 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:28:07.968 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:28:07.968 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:28:07.968 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:28:07.988 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:28:07.988 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:28:07.988 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:28:07.988 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 19:28:07.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37065 150\n [Camera]
17-03-17 19:28:08.188 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 19:28:08.588 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:28:08.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:28:08.598 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:08.598 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:08.598 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:28:08.598 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:28:08.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:28:08.598 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:08.598 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:08.598 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:28:08.898 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37065 787
17-03-17 19:28:08.918 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.018051,
17-03-17 19:28:08.938 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:28:08.968 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:28:08.968 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:28:08.968 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:08.968 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:28:08.968 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:28:08.968 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:08.978 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:28:08.978 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:28:08.978 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:28:08.988 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:28:09.128 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:28:09.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:28:09.128 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:09.128 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:28:09.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:28:09.138 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:09.138 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:09.138 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:28:09.138 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:09.138 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:28:09.318 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:28:09.318 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:28:09.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37065 150' command took 3 ms to send, 1326 ms to get response, and 1330 ms overall
17-03-17 19:28:09.318 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:28:09.318 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.168871123166423. ------
17-03-17 19:28:09.328 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:09.328 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17528 mm
17-03-17 19:28:09.328 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:28:09.328 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:28:09.328 -07 000000431 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 19:28:09.328 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 38289, sync = True, waitForSettling = False)
17-03-17 19:28:09.328 -07 000000429 INF: Z Motor: Moving to -0.175276 mm, started at -0.168871 mm, distance = -6.40 um
17-03-17 19:28:09.328 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:09.338 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:09.338 -07 000000429 INF: FPGA: Xmit ZDACW 38289\n [Z Motor]
17-03-17 19:28:09.338 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:28:09.348 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:09.348 -07 000000429 INF: FPGA: 'ZDACW 38289' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:28:09.348 -07 000000608 INF: FPGA: Recv YRDPOS 141370
17-03-17 19:28:09.358 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:28:09.358 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:28:09.358 -07 000000431 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:09.358 -07 000000431 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:28:09.358 -07 000000431 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:28:09.368 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:09.368 -07 000000627 INF: FPGA: Recv ZDACR 38289
17-03-17 19:28:09.378 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:28:09.378 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:28:09.378 -07 000000429 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 19:28:09.518 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:28:09.518 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:28:09.518 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:09.528 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:28:09.528 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:28:09.528 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:09.528 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:28:09.528 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:28:09.528 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:28:09.538 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:28:09.558 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:28:09.558 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:28:09.748 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 19:28:09.748 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:28:09.788 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:09.788 -07 000000627 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:28:09.798 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:28:09.798 -07 000000431 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:09.798 -07 000000431 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:28:09.798 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.144 mm/sec
17-03-17 19:28:10.748 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:10.748 -07 000000551 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:28:10.758 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:10.758 -07 000000431 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:10.778 -07 000000431 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:28:10.778 -07 000000431 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:28:10.778 -07 000000431 INF: Y Motor: Moved to 69.8643 after 1446 ms (table move)
17-03-17 19:28:10.778 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175276 mm (DAC = 38289)
17-03-17 19:28:10.778 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:10.778 -07 000000551 INF: FPGA: Recv ZSGSRD 36577
17-03-17 19:28:10.788 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:28:10.788 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:10.788 -07 000000502 INF: FPGA: Recv ZSGSRD 36570
17-03-17 19:28:10.798 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:10.798 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:10.798 -07 000000012 INF: FPGA: Recv ZSGSRD 36580
17-03-17 19:28:10.808 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:10.808 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:10.808 -07 000000551 INF: FPGA: Recv ZSGSRD 36584
17-03-17 19:28:10.818 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:10.818 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:10.818 -07 000000502 INF: FPGA: Recv ZSGSRD 36576
17-03-17 19:28:10.828 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:10.828 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:10.828 -07 000000551 INF: FPGA: Recv ZSGSRD 36578
17-03-17 19:28:10.838 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:10.838 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:10.838 -07 000000431 INF: FPGA: Recv ZSGSRD 36571
17-03-17 19:28:10.848 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:10.848 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:10.848 -07 000000502 INF: FPGA: Recv ZSGSRD 36569
17-03-17 19:28:10.858 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:10.858 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:10.858 -07 000000512 INF: FPGA: Recv ZSGSRD 36573
17-03-17 19:28:10.868 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:10.868 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:10.868 -07 000000429 INF: FPGA: Recv ZSGSRD 36578
17-03-17 19:28:10.878 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:10.878 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:10.878 -07 000000561 INF: FPGA: Recv ZPIEZORD 32874
17-03-17 19:28:10.888 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:10.888 -07 000000626 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.843 V. Piezo Error = -8.2 V.
17-03-17 19:28:10.888 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36576 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36576 (-174.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36569 (-174.4 uncal um), Max = 36584 (-174.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:28:10.888 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36576, posNoise = 8, negNoise = 7
17-03-17 19:28:10.888 -07 000000626 INF: Z Motor: After move to -0.175276, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:10.888 -07 000000626 INF: Z Motor: Settle wait time = 1449 ms, measure time = 106 ms (allowed 150 ms), total time = 1555 ms
17-03-17 19:28:10.888 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:28:10.938 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 19:28:10.938 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:28:10.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:10.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:10.938 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:10.938 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:28:10.938 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:10.938 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:28:10.938 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:28:10.938 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:10.948 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:10.948 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:28:10.948 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:28:10.948 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:28:10.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:28:10.998 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:28:11.198 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:28:11.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:28:11.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:28:11.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:28:11.238 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:28:11.238 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:28:11.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 19:28:11.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:28:11.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:11.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:28:11.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:28:11.338 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:11.338 -07 000000012 INF: Autofocus start
17-03-17 19:28:11.338 -07 000000012 INF: MeasureProfile start
17-03-17 19:28:11.338 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:11.348 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:28:11.348 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:28:11.358 -07 000000012 INF: MeasureProfile done
17-03-17 19:28:11.358 -07 000000012 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:28:11.358 -07 000000012 INF: Autofocus finished
17-03-17 19:28:11.548 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:28:11.548 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:28:11.548 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.175295335308184. ----------
17-03-17 19:28:11.558 -07 000000610 INF: Cycle	26	Tile	13	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:28:11.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36804, sync = True, waitForSettling = True)
17-03-17 19:28:11.558 -07 000000610 INF: Z Motor: Moving to -0.168478 mm, started at -0.175295 mm, distance = 6.82 um
17-03-17 19:28:11.558 -07 000000610 INF: FPGA: Xmit ZDACW 36804\n [Z Motor]
17-03-17 19:28:11.558 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:28:11.568 -07 000000610 INF: FPGA: 'ZDACW 36804' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:28:11.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:11.568 -07 000000561 INF: FPGA: Recv ZDACR 36804
17-03-17 19:28:11.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:11.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:28:11.688 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:28:11.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:28:11.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:11.728 -07 000000608 INF: FPGA: Recv ZSGSRD 35514
17-03-17 19:28:11.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:11.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:11.738 -07 000000429 INF: FPGA: Recv ZSGSRD 35518
17-03-17 19:28:11.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:11.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:11.748 -07 000000608 INF: FPGA: Recv ZSGSRD 35520
17-03-17 19:28:11.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:11.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:11.758 -07 000000541 INF: FPGA: Recv ZSGSRD 35517
17-03-17 19:28:11.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:11.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:11.768 -07 000000626 INF: FPGA: Recv ZSGSRD 35520
17-03-17 19:28:11.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:11.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:11.778 -07 000000561 INF: FPGA: Recv ZSGSRD 35518
17-03-17 19:28:11.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:11.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:11.788 -07 000000626 INF: FPGA: Recv ZSGSRD 35517
17-03-17 19:28:11.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:11.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:11.798 -07 000000551 INF: FPGA: Recv ZSGSRD 35517
17-03-17 19:28:11.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:11.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:11.808 -07 000000561 INF: FPGA: Recv ZSGSRD 35515
17-03-17 19:28:11.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:11.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:11.818 -07 000000541 INF: FPGA: Recv ZSGSRD 35524
17-03-17 19:28:11.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:11.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:11.828 -07 000000512 INF: FPGA: Recv ZPIEZORD 31481
17-03-17 19:28:11.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:11.838 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -8.9 V.
17-03-17 19:28:11.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35518 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35518 (-167.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35514 (-167.6 uncal um), Max = 35524 (-167.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:28:11.838 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35518, posNoise = 6, negNoise = 4
17-03-17 19:28:11.838 -07 000000610 INF: Z Motor: After move to -0.168478, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:11.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:28:11.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:11.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:11.838 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:11.838 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:11.838 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:28:11.838 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:28:11.838 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:28:11.838 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:11.838 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:28:11.838 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:28:11.838 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:28:11.838 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:28:11.848 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:28:11.848 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:28:11.848 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:28:11.848 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:28:11.848 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:28:11.848 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:28:11.858 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:28:11.858 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:28:11.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36981 150\n [Camera]
17-03-17 19:28:12.058 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:28:12.458 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:28:12.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:28:12.458 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:12.458 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:12.458 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:28:12.458 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:28:12.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:28:12.458 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:12.458 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:12.458 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:28:12.648 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36981 787
17-03-17 19:28:12.798 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:28:12.838 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:28:12.838 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:28:12.838 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:12.838 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:28:12.838 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:28:12.838 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:28:12.838 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:28:12.838 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:12.848 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:28:12.858 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:28:12.998 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:28:12.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:28:12.998 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:12.998 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:12.998 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:28:12.998 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:28:12.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:28:12.998 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:12.998 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:12.998 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:28:13.188 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:28:13.188 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:28:13.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36981 150' command took 2 ms to send, 1325 ms to get response, and 1332 ms overall
17-03-17 19:28:13.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:28:13.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8642578125, Z-Position -0.168498518862201. ------
17-03-17 19:28:13.198 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17489 mm
17-03-17 19:28:13.198 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:28:13.198 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:13.378 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:28:13.378 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:28:13.378 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:13.378 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:28:13.378 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:28:13.378 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:13.388 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:28:13.388 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:28:13.388 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:28:13.398 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:28:13.438 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:28:13.438 -07 000000431 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 19:28:13.448 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:14.248 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:14.248 -07 000000501 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:28:14.248 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 790 ms to get response, and 800 ms overall
17-03-17 19:28:14.248 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1040 ms to get response, and 1050 ms overall
17-03-17 19:28:14.248 -07 000000431 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:14.248 -07 000000431 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:28:14.248 -07 000000431 INF: Y Motor: Moving 1341 steps-18
17-03-17 19:28:14.248 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:28:14.248 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38205, sync = True, waitForSettling = False)
17-03-17 19:28:14.248 -07 000000501 INF: Z Motor: Moving to -0.174891 mm, started at -0.168499 mm, distance = -6.39 um
17-03-17 19:28:14.258 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:28:14.268 -07 000000501 INF: FPGA: Xmit ZDACW 38205\n [Z Motor]
17-03-17 19:28:15.248 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:28:15.248 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:28:15.248 -07 000000501 INF: FPGA: 'ZDACW 38205' command took 0 ms to send, 970 ms to get response, and 997 ms overall
17-03-17 19:28:15.248 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:28:15.248 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 981 ms to get response, and 999 ms overall
17-03-17 19:28:15.248 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:15.248 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 19:28:15.248 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.994908,
17-03-17 19:28:15.248 -07 000000569 INF: FPGA: Recv ZDACR 38205
17-03-17 19:28:15.258 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:28:15.258 -07 000000501 INF: Z Motor: MoveAbsStepped took 1007 ms (did NOT wait for settling yet))
17-03-17 19:28:15.298 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:15.298 -07 000000593 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:28:15.308 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:28:15.308 -07 000000431 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:15.308 -07 000000431 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:28:15.308 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 999 ms, distance = 0.838 mm, average velocity = 0.839 mm/sec
17-03-17 19:28:16.258 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:16.258 -07 000000569 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:28:16.268 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:16.268 -07 000000431 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:16.288 -07 000000431 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:28:16.288 -07 000000431 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:28:16.288 -07 000000431 INF: Y Motor: Moved to 70.6895 after 2844 ms (table move)
17-03-17 19:28:16.288 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174891 mm (DAC = 38205)
17-03-17 19:28:16.288 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:16.298 -07 000000569 INF: FPGA: Recv ZSGSRD 36514
17-03-17 19:28:16.298 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:28:16.298 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:16.298 -07 000000593 INF: FPGA: Recv ZSGSRD 36514
17-03-17 19:28:16.308 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:16.308 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:16.308 -07 000000462 INF: FPGA: Recv ZSGSRD 36513
17-03-17 19:28:16.318 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:16.318 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:16.318 -07 000000438 INF: FPGA: Recv ZSGSRD 36520
17-03-17 19:28:16.328 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:16.328 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:16.328 -07 000000626 INF: FPGA: Recv ZSGSRD 36519
17-03-17 19:28:16.338 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:16.338 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:16.338 -07 000000438 INF: FPGA: Recv ZSGSRD 36512
17-03-17 19:28:16.348 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:16.348 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:16.348 -07 000000626 INF: FPGA: Recv ZSGSRD 36513
17-03-17 19:28:16.358 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:16.358 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:16.358 -07 000000501 INF: FPGA: Recv ZSGSRD 36508
17-03-17 19:28:16.368 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:16.368 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:16.368 -07 000000462 INF: FPGA: Recv ZSGSRD 36513
17-03-17 19:28:16.378 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:16.378 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:16.378 -07 000000569 INF: FPGA: Recv ZSGSRD 36518
17-03-17 19:28:16.388 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:16.388 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:16.388 -07 000000431 INF: FPGA: Recv ZPIEZORD 32786
17-03-17 19:28:16.398 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:16.398 -07 000000512 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.830 V. Piezo Error = -8.3 V.
17-03-17 19:28:16.398 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36514 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36514 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36508 (-174.0 uncal um), Max = 36520 (-174.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:28:16.398 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36514, posNoise = 6, negNoise = 6
17-03-17 19:28:16.398 -07 000000512 INF: Z Motor: After move to -0.174891, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:16.398 -07 000000512 INF: Z Motor: Settle wait time = 2044 ms, measure time = 103 ms (allowed 150 ms), total time = 2147 ms
17-03-17 19:28:16.398 -07 000000512 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:28:16.448 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3249 ms
17-03-17 19:28:16.448 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:28:16.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:16.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:16.448 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:16.448 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:16.448 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:28:16.448 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:16.458 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:28:16.458 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:28:16.458 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:16.458 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:28:16.468 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:28:16.468 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:28:16.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:28:16.518 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:28:16.688 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:28:16.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:28:16.718 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:28:16.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:28:16.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:28:16.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-17 19:28:16.758 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:28:16.758 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 19:28:16.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 19:28:16.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:28:16.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:16.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:28:16.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 19:28:16.858 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:16.858 -07 000000623 INF: Autofocus start
17-03-17 19:28:16.858 -07 000000623 INF: MeasureProfile start
17-03-17 19:28:16.858 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:16.868 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:28:16.868 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:28:16.878 -07 000000623 INF: MeasureProfile done
17-03-17 19:28:16.878 -07 000000623 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:28:16.878 -07 000000623 INF: Autofocus finished
17-03-17 19:28:17.068 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:28:17.068 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:28:17.068 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.174897034155395. ----------
17-03-17 19:28:17.078 -07 000000610 INF: Cycle	26	Tile	14	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:28:17.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36702, sync = True, waitForSettling = True)
17-03-17 19:28:17.078 -07 000000610 INF: Z Motor: Moving to -0.168011 mm, started at -0.174897 mm, distance = 6.89 um
17-03-17 19:28:17.078 -07 000000610 INF: FPGA: Xmit ZDACW 36702\n [Z Motor]
17-03-17 19:28:17.078 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:28:17.088 -07 000000610 INF: FPGA: 'ZDACW 36702' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:28:17.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:17.088 -07 000000593 INF: FPGA: Recv ZDACR 36702
17-03-17 19:28:17.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:17.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:28:17.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:17.248 -07 000000462 INF: FPGA: Recv ZSGSRD 35443
17-03-17 19:28:17.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:17.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:17.258 -07 000000626 INF: FPGA: Recv ZSGSRD 35438
17-03-17 19:28:17.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:17.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:17.268 -07 000000623 INF: FPGA: Recv ZSGSRD 35447
17-03-17 19:28:17.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:17.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:17.278 -07 000000623 INF: FPGA: Recv ZSGSRD 35444
17-03-17 19:28:17.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:17.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:17.288 -07 000000512 INF: FPGA: Recv ZSGSRD 35446
17-03-17 19:28:17.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:17.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:17.298 -07 000000626 INF: FPGA: Recv ZSGSRD 35443
17-03-17 19:28:17.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:17.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:17.308 -07 000000593 INF: FPGA: Recv ZSGSRD 35446
17-03-17 19:28:17.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:17.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:17.318 -07 000000512 INF: FPGA: Recv ZSGSRD 35441
17-03-17 19:28:17.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:17.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:17.328 -07 000000431 INF: FPGA: Recv ZSGSRD 35441
17-03-17 19:28:17.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:17.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:17.338 -07 000000626 INF: FPGA: Recv ZSGSRD 35440
17-03-17 19:28:17.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:17.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:17.348 -07 000000626 INF: FPGA: Recv ZPIEZORD 31376
17-03-17 19:28:17.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:17.358 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.0 V.
17-03-17 19:28:17.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35443 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35443 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35438 (-167.1 uncal um), Max = 35447 (-167.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:28:17.358 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35443, posNoise = 4, negNoise = 5
17-03-17 19:28:17.358 -07 000000610 INF: Z Motor: After move to -0.168011, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:17.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:28:17.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:17.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:17.358 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:17.358 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:17.358 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:28:17.358 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:17.358 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:28:17.358 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:28:17.358 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:28:17.358 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:28:17.358 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:28:17.358 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:28:17.358 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:28:17.358 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:28:17.368 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:28:17.368 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:28:17.368 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:28:17.368 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:28:17.378 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:28:17.378 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:28:17.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36879 150\n [Camera]
17-03-17 19:28:17.588 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:28:17.988 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:28:17.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:28:17.988 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:17.988 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:17.988 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:28:17.998 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:28:17.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:28:17.998 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:17.998 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:17.998 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:28:18.178 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36879 787
17-03-17 19:28:18.338 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:28:18.368 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:28:18.368 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:28:18.368 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:18.368 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:28:18.368 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:28:18.368 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:18.368 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:28:18.378 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:28:18.378 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:28:18.378 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:28:18.528 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:28:18.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:28:18.528 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:18.528 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:18.528 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 19:28:18.528 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:28:18.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:28:18.528 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:18.528 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:18.528 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 19:28:18.718 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:28:18.718 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:28:18.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36879 150' command took 8 ms to send, 1323 ms to get response, and 1338 ms overall
17-03-17 19:28:18.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:28:18.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.689453125, Z-Position -0.168016702951569. ------
17-03-17 19:28:18.728 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:18.908 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:28:18.908 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:28:18.908 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:18.908 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:28:18.908 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:28:18.908 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:18.908 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:28:18.918 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:28:18.918 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:28:18.918 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:28:18.968 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17466 mm
17-03-17 19:28:18.968 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:28:18.968 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:18.968 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 235 ms to get response, and 245 ms overall
17-03-17 19:28:18.968 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:28:18.968 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:28:18.968 -07 000000593 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-17 19:28:18.978 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:19.958 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38155, sync = True, waitForSettling = False)
17-03-17 19:28:19.958 -07 000000502 INF: Z Motor: Moving to -0.174662 mm, started at -0.168017 mm, distance = -6.65 um
17-03-17 19:28:19.958 -07 000000502 INF: FPGA: Xmit ZDACW 38155\n [Z Motor]
17-03-17 19:28:20.488 -07 000000475 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:28:20.488 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:28:20.488 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:28:20.488 -07 000000502 INF: FPGA: 'ZDACW 38155' command took 0 ms to send, 520 ms to get response, and 526 ms overall
17-03-17 19:28:20.488 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:20.488 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1510 ms to get response, and 1514 ms overall
17-03-17 19:28:20.488 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1500 ms to get response, and 1512 ms overall
17-03-17 19:28:20.488 -07 000000593 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:20.488 -07 000000593 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:28:20.488 -07 000000593 INF: Y Motor: Moving 1349 steps-27
17-03-17 19:28:20.488 -07 000000475 INF: FPGA: Recv ZDACR 38155
17-03-17 19:28:20.498 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:20.498 -07 000000502 INF: Z Motor: MoveAbsStepped took 536 ms (did NOT wait for settling yet))
17-03-17 19:28:20.498 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:28:20.798 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.009895,
17-03-17 19:28:20.868 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 19:28:20.868 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 19:28:20.908 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:20.918 -07 000000478 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:28:20.918 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:28:20.918 -07 000000593 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:20.918 -07 000000593 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:28:20.918 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.843 mm, average velocity = 2.184 mm/sec
17-03-17 19:28:21.688 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:28:21.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:28:21.868 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:21.868 -07 000000478 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:28:21.878 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:21.878 -07 000000593 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:21.898 -07 000000593 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:28:21.898 -07 000000593 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:28:21.898 -07 000000593 INF: Y Motor: Moved to 71.5200 after 2923 ms (table move)
17-03-17 19:28:21.898 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174662 mm (DAC = 38155)
17-03-17 19:28:21.898 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:21.898 -07 000000551 INF: FPGA: Recv ZSGSRD 36478
17-03-17 19:28:21.908 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:28:21.908 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:21.908 -07 000000593 INF: FPGA: Recv ZSGSRD 36476
17-03-17 19:28:21.918 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:21.918 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:21.918 -07 000000478 INF: FPGA: Recv ZSGSRD 36479
17-03-17 19:28:21.928 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:21.928 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:21.928 -07 000000551 INF: FPGA: Recv ZSGSRD 36485
17-03-17 19:28:21.938 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:21.938 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:21.938 -07 000000429 INF: FPGA: Recv ZSGSRD 36477
17-03-17 19:28:21.948 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:21.948 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:21.948 -07 000000551 INF: FPGA: Recv ZSGSRD 36481
17-03-17 19:28:21.958 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:21.958 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:21.958 -07 000000593 INF: FPGA: Recv ZSGSRD 36482
17-03-17 19:28:21.968 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:21.968 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:21.968 -07 000000475 INF: FPGA: Recv ZSGSRD 36475
17-03-17 19:28:21.978 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:21.978 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:21.978 -07 000000551 INF: FPGA: Recv ZSGSRD 36476
17-03-17 19:28:21.988 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:21.988 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:21.988 -07 000000475 INF: FPGA: Recv ZSGSRD 36474
17-03-17 19:28:21.998 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:21.998 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:21.998 -07 000000478 INF: FPGA: Recv ZPIEZORD 32747
17-03-17 19:28:22.008 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:22.008 -07 000000623 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.822 V. Piezo Error = -8.3 V.
17-03-17 19:28:22.008 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36478 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36478 (-173.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36474 (-173.8 uncal um), Max = 36485 (-173.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:28:22.008 -07 000000623 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36478, posNoise = 7, negNoise = 4
17-03-17 19:28:22.008 -07 000000623 INF: Z Motor: After move to -0.174662, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:22.008 -07 000000623 INF: Z Motor: Settle wait time = 1942 ms, measure time = 104 ms (allowed 150 ms), total time = 2046 ms
17-03-17 19:28:22.008 -07 000000623 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:28:22.058 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3084 ms
17-03-17 19:28:22.058 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:28:22.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:22.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:22.068 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:22.068 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:22.068 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:28:22.068 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:22.068 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:28:22.068 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:28:22.068 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:22.068 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:28:22.078 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:28:22.078 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:28:22.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:28:22.128 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:28:22.328 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:28:22.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:28:22.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:28:22.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 19:28:22.358 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:28:22.368 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 19:28:22.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:28:22.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 19:28:22.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:22.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:28:22.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 19:28:22.468 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:22.468 -07 000000551 INF: Autofocus start
17-03-17 19:28:22.468 -07 000000551 INF: MeasureProfile start
17-03-17 19:28:22.468 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:22.478 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:28:22.478 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:28:22.478 -07 000000551 INF: MeasureProfile done
17-03-17 19:28:22.478 -07 000000551 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:28:22.478 -07 000000551 INF: Autofocus finished
17-03-17 19:28:22.678 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:28:22.678 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:28:22.688 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.174665762518291. ----------
17-03-17 19:28:22.688 -07 000000610 INF: Cycle	26	Tile	15	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:28:22.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36670, sync = True, waitForSettling = True)
17-03-17 19:28:22.688 -07 000000610 INF: Z Motor: Moving to -0.167864 mm, started at -0.174666 mm, distance = 6.80 um
17-03-17 19:28:22.688 -07 000000610 INF: FPGA: Xmit ZDACW 36670\n [Z Motor]
17-03-17 19:28:22.688 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:28:22.698 -07 000000610 INF: FPGA: 'ZDACW 36670' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:28:22.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:22.698 -07 000000551 INF: FPGA: Recv ZDACR 36670
17-03-17 19:28:22.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:22.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:28:22.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:22.858 -07 000000475 INF: FPGA: Recv ZSGSRD 35418
17-03-17 19:28:22.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:22.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:22.868 -07 000000623 INF: FPGA: Recv ZSGSRD 35425
17-03-17 19:28:22.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:22.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:22.878 -07 000000551 INF: FPGA: Recv ZSGSRD 35420
17-03-17 19:28:22.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:22.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:22.888 -07 000000475 INF: FPGA: Recv ZSGSRD 35416
17-03-17 19:28:22.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:22.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:22.898 -07 000000627 INF: FPGA: Recv ZSGSRD 35426
17-03-17 19:28:22.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:22.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:22.908 -07 000000551 INF: FPGA: Recv ZSGSRD 35419
17-03-17 19:28:22.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:22.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:22.918 -07 000000623 INF: FPGA: Recv ZSGSRD 35426
17-03-17 19:28:22.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:22.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:22.928 -07 000000502 INF: FPGA: Recv ZSGSRD 35421
17-03-17 19:28:22.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:22.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:22.938 -07 000000551 INF: FPGA: Recv ZSGSRD 35419
17-03-17 19:28:22.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:22.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:22.948 -07 000000627 INF: FPGA: Recv ZSGSRD 35427
17-03-17 19:28:22.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:22.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:22.958 -07 000000551 INF: FPGA: Recv ZPIEZORD 31355
17-03-17 19:28:22.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:22.968 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.595 V. Piezo Error = -9.0 V.
17-03-17 19:28:22.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35422 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35420 (-167.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35416 (-167.0 uncal um), Max = 35427 (-167.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:28:22.968 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35422, posNoise = 5, negNoise = 6
17-03-17 19:28:22.968 -07 000000610 INF: Z Motor: After move to -0.167864, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:22.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:28:22.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:22.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:22.968 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:22.968 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:28:22.968 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:22.968 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:22.968 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:28:22.978 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:28:22.978 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:28:22.978 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:28:22.978 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:28:22.978 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:28:22.978 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:22.978 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:28:22.978 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:28:22.978 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:28:22.988 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 19:28:22.988 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:28:22.988 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 19:28:22.988 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:28:22.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36846 150\n [Camera]
17-03-17 19:28:23.198 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:28:23.598 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:28:23.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:28:23.598 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:23.598 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:23.598 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:28:23.598 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:28:23.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:28:23.598 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:23.598 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:23.598 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 19:28:23.788 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36846 787
17-03-17 19:28:23.938 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:28:23.988 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:28:23.988 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:28:23.988 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:23.988 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 19:28:23.988 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:28:23.988 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:23.988 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:28:23.988 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:28:23.988 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:28:23.998 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:28:24.128 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:28:24.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:28:24.128 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:24.128 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:24.128 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 19:28:24.138 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:28:24.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:28:24.138 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:24.138 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:24.138 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 19:28:24.318 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:28:24.318 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:28:24.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36846 150' command took 2 ms to send, 1318 ms to get response, and 1329 ms overall
17-03-17 19:28:24.328 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:28:24.328 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52001953125, Z-Position -0.167881794496592. ------
17-03-17 19:28:24.328 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:24.328 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17376 mm
17-03-17 19:28:24.328 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:28:24.338 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:28:24.338 -07 000000551 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 19:28:24.338 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:24.508 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:28:24.508 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:28:24.508 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:24.518 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:28:24.518 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:28:24.518 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:24.518 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:28:24.528 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:28:24.528 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:28:24.528 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:28:24.568 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:24.568 -07 000000627 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:28:24.568 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 225 ms to get response, and 232 ms overall
17-03-17 19:28:24.568 -07 000000551 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:24.568 -07 000000551 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:28:24.568 -07 000000551 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:28:24.568 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 235 ms to get response, and 240 ms overall
17-03-17 19:28:24.568 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:28:24.568 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 37959, sync = True, waitForSettling = False)
17-03-17 19:28:24.568 -07 000000627 INF: Z Motor: Moving to -0.173765 mm, started at -0.167882 mm, distance = -5.88 um
17-03-17 19:28:24.578 -07 000000627 INF: FPGA: Xmit ZDACW 37959\n [Z Motor]
17-03-17 19:28:24.578 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:28:24.588 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:28:24.588 -07 000000627 INF: FPGA: 'ZDACW 37959' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:28:24.598 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:24.598 -07 000000502 INF: FPGA: Recv ZDACR 37959
17-03-17 19:28:24.608 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:28:24.608 -07 000000627 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 19:28:24.788 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:28:24.788 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall
17-03-17 19:28:24.948 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 19:28:24.948 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 374 ms to get response, and 378 ms overall
17-03-17 19:28:24.988 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:24.988 -07 000000429 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:28:24.998 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:28:24.998 -07 000000551 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:24.998 -07 000000551 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:28:24.998 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.843 mm, average velocity = 2.229 mm/sec
17-03-17 19:28:25.948 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:25.948 -07 000000429 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:28:25.958 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:25.958 -07 000000551 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:25.978 -07 000000551 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:28:25.978 -07 000000551 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:28:25.978 -07 000000551 INF: Y Motor: Moved to 72.3501 after 1640 ms (table move)
17-03-17 19:28:25.978 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173765 mm (DAC = 37959)
17-03-17 19:28:25.978 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:25.978 -07 000000429 INF: FPGA: Recv ZSGSRD 36335
17-03-17 19:28:25.988 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:28:25.988 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:25.988 -07 000000561 INF: FPGA: Recv ZSGSRD 36340
17-03-17 19:28:25.998 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:25.998 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:25.998 -07 000000541 INF: FPGA: Recv ZSGSRD 36338
17-03-17 19:28:26.008 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:26.008 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:26.008 -07 000000627 INF: FPGA: Recv ZSGSRD 36343
17-03-17 19:28:26.018 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:26.018 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:26.018 -07 000000541 INF: FPGA: Recv ZSGSRD 36345
17-03-17 19:28:26.028 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:26.028 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:26.028 -07 000000627 INF: FPGA: Recv ZSGSRD 36332
17-03-17 19:28:26.038 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:26.038 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:26.038 -07 000000551 INF: FPGA: Recv ZSGSRD 36342
17-03-17 19:28:26.048 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:26.048 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:26.048 -07 000000012 INF: FPGA: Recv ZSGSRD 36333
17-03-17 19:28:26.058 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:26.058 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:26.058 -07 000000551 INF: FPGA: Recv ZSGSRD 36338
17-03-17 19:28:26.068 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:26.068 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:26.068 -07 000000012 INF: FPGA: Recv ZSGSRD 36339
17-03-17 19:28:26.078 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:26.078 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:26.078 -07 000000429 INF: FPGA: Recv ZPIEZORD 32597
17-03-17 19:28:26.088 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:26.088 -07 000000626 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.792 V. Piezo Error = -8.3 V.
17-03-17 19:28:26.088 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36338 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36338 (-172.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36332 (-172.8 uncal um), Max = 36345 (-172.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:28:26.088 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36338, posNoise = 7, negNoise = 6
17-03-17 19:28:26.088 -07 000000626 INF: Z Motor: After move to -0.173765, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:26.088 -07 000000626 INF: Z Motor: Settle wait time = 1408 ms, measure time = 105 ms (allowed 150 ms), total time = 1513 ms
17-03-17 19:28:26.088 -07 000000626 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:28:26.138 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1804 ms
17-03-17 19:28:26.138 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:28:26.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:26.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:26.138 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:26.138 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:26.138 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:28:26.138 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:26.138 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:28:26.148 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:28:26.148 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:26.148 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:28:26.158 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:28:26.158 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:28:26.158 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.011254,
17-03-17 19:28:26.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:28:26.218 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:28:26.418 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:28:26.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:28:26.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:28:26.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 19:28:26.458 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:28:26.458 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:28:26.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 299 ms overall
17-03-17 19:28:26.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 19:28:26.538 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:26.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:28:26.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 19:28:26.558 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:26.558 -07 000000429 INF: Autofocus start
17-03-17 19:28:26.558 -07 000000429 INF: MeasureProfile start
17-03-17 19:28:26.558 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:26.568 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:28:26.568 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:28:26.568 -07 000000429 INF: MeasureProfile done
17-03-17 19:28:26.568 -07 000000429 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:28:26.568 -07 000000429 INF: Autofocus finished
17-03-17 19:28:26.688 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:28:26.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:28:26.768 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:28:26.768 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:28:26.768 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.173766372818445. ----------
17-03-17 19:28:26.778 -07 000000610 INF: Cycle	26	Tile	16	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:28:26.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36474, sync = True, waitForSettling = True)
17-03-17 19:28:26.778 -07 000000610 INF: Z Motor: Moving to -0.166967 mm, started at -0.173766 mm, distance = 6.80 um
17-03-17 19:28:26.778 -07 000000610 INF: FPGA: Xmit ZDACW 36474\n [Z Motor]
17-03-17 19:28:26.778 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:28:26.788 -07 000000610 INF: FPGA: 'ZDACW 36474' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:28:26.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:26.788 -07 000000541 INF: FPGA: Recv ZDACR 36474
17-03-17 19:28:26.798 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:26.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:28:26.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:26.948 -07 000000541 INF: FPGA: Recv ZSGSRD 35277
17-03-17 19:28:26.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:26.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:26.958 -07 000000502 INF: FPGA: Recv ZSGSRD 35291
17-03-17 19:28:26.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:26.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:26.968 -07 000000502 INF: FPGA: Recv ZSGSRD 35281
17-03-17 19:28:26.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:26.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:26.978 -07 000000626 INF: FPGA: Recv ZSGSRD 35273
17-03-17 19:28:26.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:26.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:26.988 -07 000000012 INF: FPGA: Recv ZSGSRD 35279
17-03-17 19:28:26.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:26.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:26.998 -07 000000012 INF: FPGA: Recv ZSGSRD 35272
17-03-17 19:28:27.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:27.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:27.008 -07 000000541 INF: FPGA: Recv ZSGSRD 35287
17-03-17 19:28:27.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:27.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:27.018 -07 000000012 INF: FPGA: Recv ZSGSRD 35281
17-03-17 19:28:27.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:27.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:27.028 -07 000000012 INF: FPGA: Recv ZSGSRD 35280
17-03-17 19:28:27.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:27.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:27.038 -07 000000541 INF: FPGA: Recv ZSGSRD 35286
17-03-17 19:28:27.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:27.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:27.048 -07 000000502 INF: FPGA: Recv ZPIEZORD 31122
17-03-17 19:28:27.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:27.058 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.566 V. Piezo Error = -9.2 V.
17-03-17 19:28:27.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35281 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35280 (-166.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35272 (-166.1 uncal um), Max = 35291 (-166.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:28:27.058 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35281, posNoise = 10, negNoise = 9
17-03-17 19:28:27.058 -07 000000610 INF: Z Motor: After move to -0.166967, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:27.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:28:27.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:27.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:27.058 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:27.058 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:27.058 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:28:27.058 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:27.058 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:28:27.058 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:28:27.058 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:28:27.058 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:28:27.058 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:28:27.058 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:28:27.058 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:28:27.058 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:28:27.068 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:28:27.068 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:28:27.068 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:28:27.068 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:28:27.078 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:28:27.078 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:28:27.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36650 150\n [Camera]
17-03-17 19:28:27.278 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:28:27.678 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:28:27.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:28:27.678 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:27.678 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:27.678 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 19:28:27.678 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:28:27.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:28:27.678 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:27.678 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:27.678 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 19:28:27.868 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36650 787
17-03-17 19:28:28.018 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:28:28.058 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:28:28.058 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:28:28.058 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:28.058 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:28:28.068 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:28:28.068 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:28:28.068 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:28.068 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:28:28.068 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:28:28.068 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:28:28.218 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:28:28.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:28:28.218 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:28.348 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:28:28.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:28:28.358 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:28.358 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 19:28:28.358 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:28.358 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:28.358 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:28:28.408 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:28:28.408 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:28:28.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36650 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-17 19:28:28.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:28:28.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.166975980584603. ------
17-03-17 19:28:28.408 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:28.408 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17354 mm
17-03-17 19:28:28.408 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:28:28.418 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:28:28.418 -07 000000012 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 19:28:28.418 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:28.728 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 19:28:28.728 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 19:28:28.728 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:28.728 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:28:28.738 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:28:28.738 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:28:28.738 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:28.738 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:28:28.738 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:28:28.738 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 19:28:28.768 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37911, sync = True, waitForSettling = False)
17-03-17 19:28:28.768 -07 000000626 INF: Z Motor: Moving to -0.173545 mm, started at -0.166976 mm, distance = -6.57 um
17-03-17 19:28:28.768 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:28.768 -07 000000541 INF: FPGA: Recv YRDPOS 148174
17-03-17 19:28:28.768 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 345 ms to get response, and 355 ms overall
17-03-17 19:28:28.768 -07 000000012 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:28.768 -07 000000626 INF: FPGA: Xmit ZDACW 37911\n [Z Motor]
17-03-17 19:28:28.768 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 355 ms to get response, and 357 ms overall
17-03-17 19:28:28.768 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:28:28.778 -07 000000626 INF: FPGA: 'ZDACW 37911' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:28:28.778 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:28:28.778 -07 000000012 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:28:28.778 -07 000000012 INF: Y Motor: Moving 1347 steps-26
17-03-17 19:28:28.788 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:28:28.798 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:28.798 -07 000000541 INF: FPGA: Recv ZDACR 37911
17-03-17 19:28:28.808 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:28:28.808 -07 000000626 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 19:28:28.978 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:28:28.978 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 206 ms overall
17-03-17 19:28:29.158 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:28:29.158 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 19:28:29.198 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:29.198 -07 000000551 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:28:29.208 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:28:29.208 -07 000000012 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:29.208 -07 000000012 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 19:28:29.208 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.843 mm, average velocity = 2.183 mm/sec
17-03-17 19:28:30.158 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:30.158 -07 000000541 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:28:30.168 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:30.168 -07 000000012 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:30.188 -07 000000012 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:28:30.188 -07 000000012 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:28:30.188 -07 000000012 INF: Y Motor: Moved to 73.1768 after 1771 ms (table move)
17-03-17 19:28:30.188 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173545 mm (DAC = 37911)
17-03-17 19:28:30.188 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:30.198 -07 000000551 INF: FPGA: Recv ZSGSRD 36302
17-03-17 19:28:30.198 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 19:28:30.198 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:30.198 -07 000000551 INF: FPGA: Recv ZSGSRD 36304
17-03-17 19:28:30.208 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:28:30.208 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:30.208 -07 000000626 INF: FPGA: Recv ZSGSRD 36299
17-03-17 19:28:30.218 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:30.218 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:30.218 -07 000000551 INF: FPGA: Recv ZSGSRD 36306
17-03-17 19:28:30.228 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:30.228 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:30.228 -07 000000541 INF: FPGA: Recv ZSGSRD 36304
17-03-17 19:28:30.238 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:30.238 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:30.238 -07 000000626 INF: FPGA: Recv ZSGSRD 36313
17-03-17 19:28:30.248 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:30.248 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:30.248 -07 000000012 INF: FPGA: Recv ZSGSRD 36313
17-03-17 19:28:30.258 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:30.258 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:30.258 -07 000000551 INF: FPGA: Recv ZSGSRD 36306
17-03-17 19:28:30.268 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:30.268 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:30.268 -07 000000626 INF: FPGA: Recv ZSGSRD 36303
17-03-17 19:28:30.278 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:30.278 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:30.278 -07 000000012 INF: FPGA: Recv ZSGSRD 36301
17-03-17 19:28:30.288 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:30.288 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:30.288 -07 000000541 INF: FPGA: Recv ZPIEZORD 32574
17-03-17 19:28:30.298 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:30.298 -07 000000561 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.785 V. Piezo Error = -8.3 V.
17-03-17 19:28:30.298 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36305 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36304 (-172.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36299 (-172.6 uncal um), Max = 36313 (-172.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:28:30.298 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36305, posNoise = 8, negNoise = 6
17-03-17 19:28:30.298 -07 000000561 INF: Z Motor: After move to -0.173545, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:30.298 -07 000000561 INF: Z Motor: Settle wait time = 1421 ms, measure time = 104 ms (allowed 150 ms), total time = 1525 ms
17-03-17 19:28:30.298 -07 000000561 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:28:30.348 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1931 ms
17-03-17 19:28:30.348 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:28:30.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:30.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:30.348 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:30.348 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:30.348 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:28:30.348 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:30.348 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:28:30.348 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:28:30.358 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:30.358 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:28:30.358 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:28:30.358 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:28:30.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:28:30.408 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:28:30.608 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:28:30.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:28:30.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:28:30.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 19:28:30.648 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:28:30.648 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 19:28:30.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:28:30.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 19:28:30.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:30.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:28:30.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 19:28:30.748 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:30.748 -07 000000569 INF: Autofocus start
17-03-17 19:28:30.748 -07 000000569 INF: MeasureProfile start
17-03-17 19:28:30.748 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:30.758 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:28:30.758 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:28:30.758 -07 000000569 INF: MeasureProfile done
17-03-17 19:28:30.758 -07 000000569 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:28:30.758 -07 000000569 INF: Autofocus finished
17-03-17 19:28:30.958 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:28:30.958 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:28:30.958 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.173554373817767. ----------
17-03-17 19:28:30.958 -07 000000610 INF: Cycle	26	Tile	17	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:28:30.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36425, sync = True, waitForSettling = True)
17-03-17 19:28:30.968 -07 000000610 INF: Z Motor: Moving to -0.166743 mm, started at -0.173554 mm, distance = 6.81 um
17-03-17 19:28:30.968 -07 000000610 INF: FPGA: Xmit ZDACW 36425\n [Z Motor]
17-03-17 19:28:30.968 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:28:30.978 -07 000000610 INF: FPGA: 'ZDACW 36425' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:28:30.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:30.978 -07 000000512 INF: FPGA: Recv ZDACR 36425
17-03-17 19:28:30.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:30.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:28:31.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:31.138 -07 000000561 INF: FPGA: Recv ZSGSRD 35245
17-03-17 19:28:31.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:31.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:31.148 -07 000000512 INF: FPGA: Recv ZSGSRD 35243
17-03-17 19:28:31.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:31.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:31.158 -07 000000512 INF: FPGA: Recv ZSGSRD 35244
17-03-17 19:28:31.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:31.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:31.168 -07 000000431 INF: FPGA: Recv ZSGSRD 35247
17-03-17 19:28:31.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:31.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:31.178 -07 000000541 INF: FPGA: Recv ZSGSRD 35253
17-03-17 19:28:31.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:31.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:31.188 -07 000000569 INF: FPGA: Recv ZSGSRD 35243
17-03-17 19:28:31.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:31.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:31.198 -07 000000431 INF: FPGA: Recv ZSGSRD 35244
17-03-17 19:28:31.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:31.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:31.208 -07 000000551 INF: FPGA: Recv ZSGSRD 35245
17-03-17 19:28:31.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:31.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:31.228 -07 000000561 INF: FPGA: Recv ZSGSRD 35248
17-03-17 19:28:31.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:28:31.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:31.238 -07 000000569 INF: FPGA: Recv ZSGSRD 35242
17-03-17 19:28:31.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:31.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:31.248 -07 000000012 INF: FPGA: Recv ZPIEZORD 31124
17-03-17 19:28:31.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:28:31.258 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.558 V. Piezo Error = -9.1 V.
17-03-17 19:28:31.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35245 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35244 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35242 (-165.9 uncal um), Max = 35253 (-165.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:28:31.258 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35245, posNoise = 8, negNoise = 3
17-03-17 19:28:31.258 -07 000000610 INF: Z Motor: After move to -0.166743, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:31.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 19:28:31.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:31.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:31.258 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:31.258 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:31.258 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:28:31.258 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:31.258 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:28:31.258 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:28:31.258 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:28:31.258 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:28:31.258 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:28:31.258 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:28:31.268 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:31.268 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:28:31.268 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:28:31.268 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:28:31.278 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 19:28:31.278 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:28:31.278 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 19:28:31.278 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:28:31.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36602 150\n [Camera]
17-03-17 19:28:31.478 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:28:31.538 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.979922,
17-03-17 19:28:31.688 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:28:31.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:28:31.878 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:28:31.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:28:31.878 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:31.888 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:28:31.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:28:31.888 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:31.888 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:31.888 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-17 19:28:31.898 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:31.898 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:28:32.078 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36602 787
17-03-17 19:28:32.228 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:28:32.278 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:28:32.278 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:28:32.278 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:32.278 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:28:32.278 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:28:32.278 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 19:28:32.278 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:28:32.278 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:32.288 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:28:32.288 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 19:28:32.418 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:28:32.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:28:32.418 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:32.538 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:28:32.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:28:32.538 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:32.548 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:32.548 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:28:32.548 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:32.548 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) start.
17-03-17 19:28:32.608 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:28:32.608 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:28:32.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36602 150' command took 2 ms to send, 1326 ms to get response, and 1329 ms overall
17-03-17 19:28:32.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:28:32.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.1667447089475. ------
17-03-17 19:28:32.618 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:32.618 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17323 mm
17-03-17 19:28:32.618 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:28:32.618 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:28:32.618 -07 000000561 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 19:28:32.628 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:32.918 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:28:32.918 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:28:32.918 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:32.928 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:28:32.928 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:28:32.928 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:28:32.928 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:32.928 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:28:32.928 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 19:28:32.938 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:28:32.948 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37843, sync = True, waitForSettling = False)
17-03-17 19:28:32.948 -07 000000431 INF: Z Motor: Moving to -0.173234 mm, started at -0.166745 mm, distance = -6.49 um
17-03-17 19:28:32.948 -07 000000431 INF: FPGA: Xmit ZDACW 37843\n [Z Motor]
17-03-17 19:28:32.958 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:32.958 -07 000000541 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:28:32.958 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:28:32.958 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 327 ms to get response, and 340 ms overall
17-03-17 19:28:32.958 -07 000000561 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:32.958 -07 000000561 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:28:32.958 -07 000000561 INF: Y Motor: Moving 1353 steps-32
17-03-17 19:28:32.958 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:28:32.958 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 337 ms to get response, and 344 ms overall
17-03-17 19:28:32.958 -07 000000431 INF: FPGA: 'ZDACW 37843' command took 0 ms to send, 7 ms to get response, and 10 ms overall
17-03-17 19:28:32.968 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:32.968 -07 000000541 INF: FPGA: Recv ZDACR 37843
17-03-17 19:28:32.978 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:28:32.978 -07 000000431 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 19:28:32.978 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:28:33.178 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:28:33.178 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 214 ms overall
17-03-17 19:28:33.338 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:28:33.338 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 376 ms to get response, and 378 ms overall
17-03-17 19:28:33.368 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:33.368 -07 000000431 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:28:33.378 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:28:33.378 -07 000000561 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:33.378 -07 000000561 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:28:33.378 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.846 mm, average velocity = 2.238 mm/sec
17-03-17 19:28:34.328 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:34.328 -07 000000569 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:28:34.338 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:34.338 -07 000000561 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:34.348 -07 000000561 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:28:34.348 -07 000000561 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:28:34.348 -07 000000561 INF: Y Motor: Moved to 74.0088 after 1729 ms (table move)
17-03-17 19:28:34.358 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173234 mm (DAC = 37843)
17-03-17 19:28:34.358 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:34.358 -07 000000569 INF: FPGA: Recv ZSGSRD 36261
17-03-17 19:28:34.368 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:28:34.368 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:34.368 -07 000000569 INF: FPGA: Recv ZSGSRD 36265
17-03-17 19:28:34.378 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:34.378 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:34.378 -07 000000569 INF: FPGA: Recv ZSGSRD 36248
17-03-17 19:28:34.388 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:34.388 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:34.388 -07 000000569 INF: FPGA: Recv ZSGSRD 36258
17-03-17 19:28:34.398 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:34.398 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:34.398 -07 000000561 INF: FPGA: Recv ZSGSRD 36252
17-03-17 19:28:34.408 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:34.408 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:34.408 -07 000000569 INF: FPGA: Recv ZSGSRD 36255
17-03-17 19:28:34.418 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:34.418 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:34.418 -07 000000541 INF: FPGA: Recv ZSGSRD 36256
17-03-17 19:28:34.428 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:34.428 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:34.428 -07 000000541 INF: FPGA: Recv ZSGSRD 36259
17-03-17 19:28:34.438 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:34.438 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:34.438 -07 000000431 INF: FPGA: Recv ZSGSRD 36264
17-03-17 19:28:34.448 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:34.448 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:34.448 -07 000000541 INF: FPGA: Recv ZSGSRD 36255
17-03-17 19:28:34.458 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:34.458 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:34.458 -07 000000431 INF: FPGA: Recv ZPIEZORD 32499
17-03-17 19:28:34.468 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:34.468 -07 000000438 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.774 V. Piezo Error = -8.3 V.
17-03-17 19:28:34.468 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36257 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36257 (-172.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36248 (-172.3 uncal um), Max = 36265 (-172.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:28:34.468 -07 000000438 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36257, posNoise = 8, negNoise = 9
17-03-17 19:28:34.468 -07 000000438 INF: Z Motor: After move to -0.173234, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:34.468 -07 000000438 INF: Z Motor: Settle wait time = 1405 ms, measure time = 108 ms (allowed 150 ms), total time = 1513 ms
17-03-17 19:28:34.468 -07 000000438 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:28:34.518 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1896 ms
17-03-17 19:28:34.518 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:28:34.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:34.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:34.518 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:34.518 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:28:34.518 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:34.528 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:34.528 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:28:34.528 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:28:34.528 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:34.528 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:28:34.538 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:28:34.538 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:28:34.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:28:34.578 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:28:34.778 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:28:34.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:28:34.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:28:34.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 19:28:34.818 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:28:34.818 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 19:28:34.818 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 19:28:34.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:28:34.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:34.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:28:34.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:28:34.918 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:34.918 -07 000000431 INF: Autofocus start
17-03-17 19:28:34.918 -07 000000431 INF: MeasureProfile start
17-03-17 19:28:34.918 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:34.928 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:28:34.928 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:28:34.938 -07 000000431 INF: MeasureProfile done
17-03-17 19:28:34.938 -07 000000431 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:28:34.938 -07 000000431 INF: Autofocus finished
17-03-17 19:28:35.128 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:28:35.128 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:28:35.128 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.173246011634962. ----------
17-03-17 19:28:35.128 -07 000000610 INF: Cycle	26	Tile	18	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:28:35.138 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36340, sync = True, waitForSettling = True)
17-03-17 19:28:35.138 -07 000000610 INF: Z Motor: Moving to -0.166354 mm, started at -0.173246 mm, distance = 6.89 um
17-03-17 19:28:35.138 -07 000000610 INF: FPGA: Xmit ZDACW 36340\n [Z Motor]
17-03-17 19:28:35.138 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:28:35.148 -07 000000610 INF: FPGA: 'ZDACW 36340' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:28:35.148 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:35.148 -07 000000431 INF: FPGA: Recv ZDACR 36340
17-03-17 19:28:35.158 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:35.158 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:28:35.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:35.308 -07 000000541 INF: FPGA: Recv ZSGSRD 35184
17-03-17 19:28:35.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:35.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:35.318 -07 000000541 INF: FPGA: Recv ZSGSRD 35190
17-03-17 19:28:35.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:35.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:35.328 -07 000000431 INF: FPGA: Recv ZSGSRD 35181
17-03-17 19:28:35.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:35.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:35.338 -07 000000475 INF: FPGA: Recv ZSGSRD 35186
17-03-17 19:28:35.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:35.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:35.348 -07 000000623 INF: FPGA: Recv ZSGSRD 35193
17-03-17 19:28:35.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:35.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:35.358 -07 000000431 INF: FPGA: Recv ZSGSRD 35181
17-03-17 19:28:35.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:35.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:35.368 -07 000000462 INF: FPGA: Recv ZSGSRD 35188
17-03-17 19:28:35.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:35.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:35.378 -07 000000623 INF: FPGA: Recv ZSGSRD 35190
17-03-17 19:28:35.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:35.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:35.388 -07 000000431 INF: FPGA: Recv ZSGSRD 35188
17-03-17 19:28:35.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:35.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:35.398 -07 000000475 INF: FPGA: Recv ZSGSRD 35184
17-03-17 19:28:35.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:35.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:35.408 -07 000000478 INF: FPGA: Recv ZPIEZORD 31056
17-03-17 19:28:35.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:35.418 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.545 V. Piezo Error = -9.1 V.
17-03-17 19:28:35.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35186 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35187 (-165.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35181 (-165.5 uncal um), Max = 35193 (-165.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:28:35.418 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35186, posNoise = 7, negNoise = 5
17-03-17 19:28:35.418 -07 000000610 INF: Z Motor: After move to -0.166354, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:35.418 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:28:35.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:35.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:35.418 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:35.418 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:28:35.418 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:35.418 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:28:35.418 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:28:35.418 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:35.418 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:28:35.418 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:28:35.418 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:28:35.418 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:28:35.428 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:35.428 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:28:35.428 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:28:35.428 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:28:35.438 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:28:35.438 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:28:35.438 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:28:35.438 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:28:35.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36517 150\n [Camera]
17-03-17 19:28:35.638 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 19:28:36.038 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:28:36.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:28:36.038 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:36.038 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:36.038 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:28:36.038 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:28:36.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:28:36.048 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:36.048 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:36.048 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:28:36.228 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36517 787
17-03-17 19:28:36.378 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:28:36.418 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:28:36.418 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:28:36.418 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:36.418 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:28:36.418 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:28:36.418 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:36.428 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:28:36.428 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:28:36.428 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:28:36.428 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:28:36.578 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:28:36.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:28:36.578 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:36.578 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:28:36.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:28:36.578 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:36.588 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:36.588 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:28:36.588 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:36.588 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:28:36.688 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:28:36.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:28:36.768 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:28:36.768 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:28:36.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36517 150' command took 2 ms to send, 1324 ms to get response, and 1329 ms overall
17-03-17 19:28:36.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:28:36.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.166365680431136. ------
17-03-17 19:28:36.768 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17269 mm
17-03-17 19:28:36.768 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:28:36.768 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:36.778 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:36.778 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:28:36.778 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:28:36.778 -07 000000501 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 19:28:36.778 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:28:36.778 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 37723, sync = True, waitForSettling = False)
17-03-17 19:28:36.778 -07 000000593 INF: Z Motor: Moving to -0.172685 mm, started at -0.166366 mm, distance = -6.32 um
17-03-17 19:28:36.788 -07 000000593 INF: FPGA: Xmit ZDACW 37723\n [Z Motor]
17-03-17 19:28:36.788 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:28:36.798 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:36.798 -07 000000593 INF: FPGA: 'ZDACW 37723' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:28:36.798 -07 000000429 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:28:36.808 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:28:36.808 -07 000000501 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:36.808 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:36.808 -07 000000501 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:28:36.808 -07 000000501 INF: Y Motor: Moving 1350 steps-28
17-03-17 19:28:36.808 -07 000000462 INF: FPGA: Recv ZDACR 37723
17-03-17 19:28:36.818 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:28:36.818 -07 000000593 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 19:28:36.818 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:28:36.908 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.975845,
17-03-17 19:28:36.968 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:28:36.968 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:28:36.968 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:36.968 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:28:36.968 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:28:36.968 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:36.968 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:28:36.968 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:28:36.968 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:28:36.978 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:28:36.978 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:28:36.978 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 199 ms to get response, and 205 ms overall
17-03-17 19:28:37.188 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:28:37.188 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:28:37.238 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:37.238 -07 000000478 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:28:37.248 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:28:37.248 -07 000000501 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:37.248 -07 000000501 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 19:28:37.248 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.175 mm/sec
17-03-17 19:28:38.198 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:38.198 -07 000000438 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:28:38.208 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:38.208 -07 000000501 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:38.218 -07 000000501 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:28:38.218 -07 000000501 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:28:38.218 -07 000000501 INF: Y Motor: Moved to 74.8330 after 1441 ms (table move)
17-03-17 19:28:38.228 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172685 mm (DAC = 37723)
17-03-17 19:28:38.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:38.228 -07 000000478 INF: FPGA: Recv ZSGSRD 36169
17-03-17 19:28:38.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:28:38.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:38.238 -07 000000501 INF: FPGA: Recv ZSGSRD 36167
17-03-17 19:28:38.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:38.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:38.248 -07 000000541 INF: FPGA: Recv ZSGSRD 36176
17-03-17 19:28:38.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:38.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:38.258 -07 000000501 INF: FPGA: Recv ZSGSRD 36174
17-03-17 19:28:38.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:38.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:38.268 -07 000000438 INF: FPGA: Recv ZSGSRD 36175
17-03-17 19:28:38.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:38.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:38.278 -07 000000501 INF: FPGA: Recv ZSGSRD 36177
17-03-17 19:28:38.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:38.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:38.288 -07 000000541 INF: FPGA: Recv ZSGSRD 36173
17-03-17 19:28:38.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:38.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:38.298 -07 000000541 INF: FPGA: Recv ZSGSRD 36168
17-03-17 19:28:38.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:38.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:38.308 -07 000000438 INF: FPGA: Recv ZSGSRD 36167
17-03-17 19:28:38.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:38.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:38.318 -07 000000541 INF: FPGA: Recv ZSGSRD 36176
17-03-17 19:28:38.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:38.328 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:38.328 -07 000000501 INF: FPGA: Recv ZPIEZORD 32379
17-03-17 19:28:38.338 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:38.338 -07 000000431 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.756 V. Piezo Error = -8.4 V.
17-03-17 19:28:38.338 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36172 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36174 (-171.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36167 (-171.8 uncal um), Max = 36177 (-171.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:28:38.338 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36172, posNoise = 5, negNoise = 5
17-03-17 19:28:38.338 -07 000000431 INF: Z Motor: After move to -0.172685, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:38.338 -07 000000431 INF: Z Motor: Settle wait time = 1445 ms, measure time = 109 ms (allowed 150 ms), total time = 1554 ms
17-03-17 19:28:38.338 -07 000000431 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 19:28:38.388 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 19:28:38.388 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:28:38.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:38.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:38.388 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:38.388 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:38.388 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:28:38.388 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:38.398 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:28:38.398 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:28:38.398 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:38.398 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:28:38.408 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:28:38.408 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:28:38.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:28:38.458 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:28:38.658 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:28:38.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:28:38.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:28:38.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:28:38.698 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:28:38.698 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:28:38.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 19:28:38.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 19:28:38.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:38.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:28:38.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 19:28:38.798 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:38.798 -07 000000541 INF: Autofocus start
17-03-17 19:28:38.798 -07 000000541 INF: MeasureProfile start
17-03-17 19:28:38.798 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:38.808 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:28:38.808 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:28:38.808 -07 000000541 INF: MeasureProfile done
17-03-17 19:28:38.808 -07 000000541 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:28:38.808 -07 000000541 INF: Autofocus finished
17-03-17 19:28:39.008 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:28:39.008 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:28:39.008 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.172699953602912. ----------
17-03-17 19:28:39.018 -07 000000610 INF: Cycle	26	Tile	19	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:28:39.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36256, sync = True, waitForSettling = True)
17-03-17 19:28:39.018 -07 000000610 INF: Z Motor: Moving to -0.165969 mm, started at -0.172700 mm, distance = 6.73 um
17-03-17 19:28:39.018 -07 000000610 INF: FPGA: Xmit ZDACW 36256\n [Z Motor]
17-03-17 19:28:39.018 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:28:39.028 -07 000000610 INF: FPGA: 'ZDACW 36256' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:28:39.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:39.028 -07 000000501 INF: FPGA: Recv ZDACR 36256
17-03-17 19:28:39.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:39.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:28:39.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:39.188 -07 000000541 INF: FPGA: Recv ZSGSRD 35127
17-03-17 19:28:39.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:39.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:39.198 -07 000000501 INF: FPGA: Recv ZSGSRD 35121
17-03-17 19:28:39.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:39.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:39.208 -07 000000551 INF: FPGA: Recv ZSGSRD 35125
17-03-17 19:28:39.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:39.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:39.218 -07 000000431 INF: FPGA: Recv ZSGSRD 35131
17-03-17 19:28:39.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:39.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:39.228 -07 000000478 INF: FPGA: Recv ZSGSRD 35124
17-03-17 19:28:39.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:39.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:39.238 -07 000000431 INF: FPGA: Recv ZSGSRD 35128
17-03-17 19:28:39.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:39.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:39.298 -07 000000478 INF: FPGA: Recv ZSGSRD 35126
17-03-17 19:28:39.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:39.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:39.308 -07 000000551 INF: FPGA: Recv ZSGSRD 35126
17-03-17 19:28:39.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:39.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:39.318 -07 000000431 INF: FPGA: Recv ZSGSRD 35125
17-03-17 19:28:39.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:39.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:39.328 -07 000000501 INF: FPGA: Recv ZSGSRD 35125
17-03-17 19:28:39.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:39.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:39.338 -07 000000431 INF: FPGA: Recv ZPIEZORD 30998
17-03-17 19:28:39.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:39.348 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.532 V. Piezo Error = -9.1 V.
17-03-17 19:28:39.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35126 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35126 (-165.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35121 (-165.1 uncal um), Max = 35131 (-165.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:28:39.348 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35126, posNoise = 5, negNoise = 5
17-03-17 19:28:39.348 -07 000000610 INF: Z Motor: After move to -0.165969, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:39.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 328 ms)
17-03-17 19:28:39.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:39.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:39.348 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:39.348 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:39.348 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:28:39.348 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:28:39.348 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:39.348 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:28:39.348 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:28:39.348 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:28:39.348 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:28:39.348 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:28:39.358 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:39.358 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:28:39.358 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:28:39.358 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:28:39.368 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:28:39.368 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:28:39.368 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:28:39.368 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:28:39.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36433 150\n [Camera]
17-03-17 19:28:39.568 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:28:39.968 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:28:39.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:28:39.968 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:39.968 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:39.968 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:28:39.968 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:28:39.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:28:39.968 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:39.978 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:39.978 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:28:40.158 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36433 787
17-03-17 19:28:40.308 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:28:40.348 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:28:40.348 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:28:40.348 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:40.348 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:28:40.348 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:28:40.348 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:40.358 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:28:40.358 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:28:40.358 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:28:40.358 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:28:40.508 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:28:40.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:28:40.508 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:40.508 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:40.508 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:28:40.508 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:28:40.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:28:40.508 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:40.508 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:40.508 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:28:40.698 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:28:40.698 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:28:40.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36433 150' command took 2 ms to send, 1326 ms to get response, and 1332 ms overall
17-03-17 19:28:40.888 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:28:40.888 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:28:40.888 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:40.888 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:28:40.888 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:28:40.888 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:40.888 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:28:40.898 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:28:40.898 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:28:40.898 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:28:40.898 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:28:40.938 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-17 19:28:40.938 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:28:40.978 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 19:28:40.978 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 19:28:40.978 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:28:40.978 -07 000000541 INF: FPGA: Recv EMCUR 
17-03-17 19:28:40.988 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:28:40.988 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 19:28:41.488 -07 000000541 INF: FPGA: Recv EMIN
17-03-17 19:28:41.488 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 19:28:41.488 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 19:28:41.488 -07 000000431 INF: FPGA: Recv EMCUR 
17-03-17 19:28:41.498 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:28:41.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:28:41.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8330078125, Z-Position -0.16598022770263. ------
17-03-17 19:28:41.498 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:41.498 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14048 mm
17-03-17 19:28:41.498 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:28:41.498 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:28:41.498 -07 000000475 INF: Y Motor: Moving to 59.9126 mm, started at 74.8330 mm, delta = -14.9204 mm
17-03-17 19:28:41.498 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:41.498 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30688, sync = True, waitForSettling = False)
17-03-17 19:28:41.498 -07 000000438 INF: Z Motor: Moving to -0.140481 mm, started at -0.165980 mm, distance = 25.50 um
17-03-17 19:28:41.508 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:28:41.508 -07 000000438 INF: FPGA: Xmit ZDACW 30688\n [Z Motor]
17-03-17 19:28:41.508 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:28:41.518 -07 000000438 INF: FPGA: 'ZDACW 30688' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:28:41.518 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:41.518 -07 000000551 INF: FPGA: Recv YRDPOS 153259
17-03-17 19:28:41.528 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:28:41.528 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:28:41.528 -07 000000475 INF: Y Motor: Encoder = 153259 = motor step 119733.6 = 74.8335 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:41.528 -07 000000475 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 19:28:41.528 -07 000000475 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:28:41.538 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:41.538 -07 000000501 INF: FPGA: Recv ZDACR 30688
17-03-17 19:28:41.548 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:28:41.548 -07 000000438 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 19:28:41.548 -07 000000475 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:28:41.688 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:28:41.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:28:41.728 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:28:41.728 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:28:42.278 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.973092,
17-03-17 19:28:43.168 -07 000000569 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 19:28:43.168 -07 000000475 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1645 ms overall
17-03-17 19:28:43.168 -07 000000475 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:28:43.168 -07 000000475 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 19:28:43.168 -07 000000475 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1645 ms, distance = 14.920 mm, average velocity = 9.070 mm/sec
17-03-17 19:28:46.018 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:46.018 -07 000000501 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:28:46.028 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:46.028 -07 000000475 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:46.058 -07 000000475 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:28:46.058 -07 000000475 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 19:28:46.058 -07 000000475 INF: Y Motor: Moved to 59.9116 after 4555 ms
17-03-17 19:28:46.068 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140481 mm (DAC = 30688)
17-03-17 19:28:46.078 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:46.078 -07 000000431 INF: FPGA: Recv ZSGSRD 31159
17-03-17 19:28:46.088 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:28:46.088 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:46.088 -07 000000475 INF: FPGA: Recv ZSGSRD 31161
17-03-17 19:28:46.098 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:46.098 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:46.098 -07 000000569 INF: FPGA: Recv ZSGSRD 31160
17-03-17 19:28:46.108 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:46.108 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:46.108 -07 000000462 INF: FPGA: Recv ZSGSRD 31158
17-03-17 19:28:46.118 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:46.118 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:46.118 -07 000000569 INF: FPGA: Recv ZSGSRD 31154
17-03-17 19:28:46.128 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:46.128 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:46.128 -07 000000501 INF: FPGA: Recv ZSGSRD 31159
17-03-17 19:28:46.138 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:46.138 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:46.138 -07 000000462 INF: FPGA: Recv ZSGSRD 31160
17-03-17 19:28:46.148 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:46.148 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:46.148 -07 000000501 INF: FPGA: Recv ZSGSRD 31152
17-03-17 19:28:46.158 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:46.158 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:46.158 -07 000000475 INF: FPGA: Recv ZSGSRD 31158
17-03-17 19:28:46.168 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:46.168 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:46.168 -07 000000569 INF: FPGA: Recv ZSGSRD 31162
17-03-17 19:28:46.178 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:46.178 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:46.178 -07 000000462 INF: FPGA: Recv ZPIEZORD 26820
17-03-17 19:28:46.188 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:46.188 -07 000000541 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.683 V. Piezo Error = -9.5 V.
17-03-17 19:28:46.188 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.5 um, Read 10 ADC samples: Avg = 31158 (-139.7 uncal um), Error = 0.8 uncal um, Median = 31159 (-139.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31152 (-139.6 uncal um), Max = 31162 (-139.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:28:46.188 -07 000000541 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31158, posNoise = 4, negNoise = 6
17-03-17 19:28:46.188 -07 000000541 INF: Z Motor: After move to -0.140481, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:46.188 -07 000000541 INF: Z Motor: Settle wait time = 4572 ms, measure time = 110 ms (allowed 150 ms), total time = 4682 ms
17-03-17 19:28:46.188 -07 000000541 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 19:28:46.228 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4725 ms
17-03-17 19:28:46.228 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:28:46.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:46.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:46.228 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:46.228 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:46.238 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:28:46.238 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:46.238 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:28:46.238 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:28:46.258 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 19:28:46.258 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:28:46.258 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:46.258 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:28:46.268 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:28:46.268 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 33 ms.
17-03-17 19:28:46.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:28:46.308 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:28:46.508 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:28:46.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:28:46.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:28:46.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) start.
17-03-17 19:28:46.548 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:28:46.548 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 19:28:46.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 19:28:46.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:28:46.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:46.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:28:46.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:28:46.648 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:46.648 -07 000000431 INF: Image SNR check: start
17-03-17 19:28:46.648 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:46.658 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:28:46.658 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:28:46.668 -07 000000431 INF: Image SNR check: pass  [peak (Max-Min)=64.67]
17-03-17 19:28:46.668 -07 000000431 INF: Autofocus start
17-03-17 19:28:46.668 -07 000000431 INF: MeasureProfile start
17-03-17 19:28:46.688 -07 000000431 INF: MeasureProfile done
17-03-17 19:28:46.688 -07 000000431 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:28:46.688 -07 000000431 INF: Autofocus finished
17-03-17 19:28:46.688 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:28:46.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:28:46.858 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:28:46.858 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 19:28:46.868 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.140488953924123. ----------
17-03-17 19:28:46.868 -07 000000610 INF: Cycle	26	Tile	1	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:28:46.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29183, sync = True, waitForSettling = True)
17-03-17 19:28:46.868 -07 000000610 INF: Z Motor: Moving to -0.133591 mm, started at -0.140489 mm, distance = 6.90 um
17-03-17 19:28:46.868 -07 000000610 INF: FPGA: Xmit ZDACW 29183\n [Z Motor]
17-03-17 19:28:46.868 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:28:46.878 -07 000000610 INF: FPGA: 'ZDACW 29183' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:28:46.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:46.878 -07 000000462 INF: FPGA: Recv ZDACR 29183
17-03-17 19:28:46.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:46.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:28:47.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:47.038 -07 000000502 INF: FPGA: Recv ZSGSRD 30080
17-03-17 19:28:47.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:47.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:47.048 -07 000000475 INF: FPGA: Recv ZSGSRD 30082
17-03-17 19:28:47.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:47.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:47.058 -07 000000501 INF: FPGA: Recv ZSGSRD 30087
17-03-17 19:28:47.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:47.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:47.068 -07 000000475 INF: FPGA: Recv ZSGSRD 30083
17-03-17 19:28:47.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:47.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:47.078 -07 000000569 INF: FPGA: Recv ZSGSRD 30085
17-03-17 19:28:47.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:47.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:47.088 -07 000000475 INF: FPGA: Recv ZSGSRD 30089
17-03-17 19:28:47.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:47.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:47.098 -07 000000431 INF: FPGA: Recv ZSGSRD 30083
17-03-17 19:28:47.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:47.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:47.108 -07 000000475 INF: FPGA: Recv ZSGSRD 30081
17-03-17 19:28:47.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:47.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:47.118 -07 000000569 INF: FPGA: Recv ZSGSRD 30081
17-03-17 19:28:47.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:47.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:47.128 -07 000000462 INF: FPGA: Recv ZSGSRD 30084
17-03-17 19:28:47.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:47.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:47.138 -07 000000569 INF: FPGA: Recv ZPIEZORD 25699
17-03-17 19:28:47.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:47.148 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.453 V. Piezo Error = -9.6 V.
17-03-17 19:28:47.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30084 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30083 (-132.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30080 (-132.8 uncal um), Max = 30089 (-132.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:28:47.148 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30084, posNoise = 5, negNoise = 4
17-03-17 19:28:47.148 -07 000000610 INF: Z Motor: After move to -0.133591, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:47.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:28:47.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:47.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:47.148 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:47.148 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:47.148 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:28:47.158 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:47.158 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:28:47.158 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:28:47.158 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:28:47.158 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:28:47.158 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:28:47.158 -07 000000475 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:28:47.158 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:47.158 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:28:47.168 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:28:47.168 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:28:47.178 -07 000000475 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 19:28:47.178 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:28:47.178 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:28:47.178 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:28:47.188 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:28:47.188 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 19:28:47.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 29360 150\n [Camera]
17-03-17 19:28:47.388 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:28:47.648 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.000345,
17-03-17 19:28:47.788 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:28:47.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:28:47.788 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:47.788 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:47.798 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:28:47.798 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:28:47.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:28:47.798 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:47.798 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:47.798 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:28:47.988 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29360 787
17-03-17 19:28:48.138 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:28:48.178 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:28:48.178 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:28:48.178 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:48.178 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:28:48.178 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:28:48.178 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:48.178 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:28:48.178 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:28:48.178 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:28:48.188 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:28:48.328 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:28:48.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:28:48.328 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:48.328 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:48.328 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 19:28:48.328 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:28:48.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:28:48.328 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:48.328 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:48.328 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 19:28:48.518 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:28:48.518 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:28:48.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 29360 150' command took 2 ms to send, 1326 ms to get response, and 1329 ms overall
17-03-17 19:28:48.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:28:48.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.133589350083872. ------
17-03-17 19:28:48.528 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14003 mm
17-03-17 19:28:48.528 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:28:48.528 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:48.528 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 30589, sync = True, waitForSettling = False)
17-03-17 19:28:48.528 -07 000000475 INF: Z Motor: Moving to -0.140027 mm, started at -0.133589 mm, distance = -6.44 um
17-03-17 19:28:48.528 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:28:48.528 -07 000000627 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 19:28:48.528 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:48.538 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:28:48.538 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:48.538 -07 000000429 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:28:48.548 -07 000000475 INF: FPGA: Xmit ZDACW 30589\n [Z Motor]
17-03-17 19:28:48.548 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:28:48.548 -07 000000627 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:48.548 -07 000000627 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:28:48.548 -07 000000627 INF: Y Motor: Moving 1330 steps2
17-03-17 19:28:48.548 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:28:48.558 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:28:48.558 -07 000000475 INF: FPGA: 'ZDACW 30589' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:28:48.568 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:28:48.578 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:48.578 -07 000000561 INF: FPGA: Recv ZDACR 30589
17-03-17 19:28:48.588 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:28:48.588 -07 000000475 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 19:28:48.718 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:28:48.718 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:28:48.718 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:48.718 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:28:48.718 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:28:48.718 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:48.718 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:28:48.728 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:28:48.728 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:28:48.728 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:28:48.758 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:28:48.758 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:28:48.938 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 19:28:48.938 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 19:28:48.968 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:48.978 -07 000000593 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:28:48.978 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:28:48.978 -07 000000627 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:48.978 -07 000000627 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:28:48.978 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.093 mm/sec
17-03-17 19:28:49.928 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:49.928 -07 000000502 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:28:49.938 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:49.938 -07 000000627 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:49.958 -07 000000627 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:28:49.958 -07 000000627 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:28:49.958 -07 000000627 INF: Y Motor: Moved to 60.7339 after 1426 ms (table move)
17-03-17 19:28:49.958 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140027 mm (DAC = 30589)
17-03-17 19:28:49.958 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:49.958 -07 000000593 INF: FPGA: Recv ZSGSRD 31086
17-03-17 19:28:49.968 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:28:49.968 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:49.968 -07 000000593 INF: FPGA: Recv ZSGSRD 31086
17-03-17 19:28:49.978 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:49.978 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:49.978 -07 000000593 INF: FPGA: Recv ZSGSRD 31086
17-03-17 19:28:49.988 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:49.988 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:49.988 -07 000000593 INF: FPGA: Recv ZSGSRD 31087
17-03-17 19:28:49.998 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:49.998 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:49.998 -07 000000593 INF: FPGA: Recv ZSGSRD 31092
17-03-17 19:28:50.008 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:50.008 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:50.008 -07 000000593 INF: FPGA: Recv ZSGSRD 31090
17-03-17 19:28:50.018 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:50.018 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:50.018 -07 000000502 INF: FPGA: Recv ZSGSRD 31085
17-03-17 19:28:50.028 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:50.028 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:50.028 -07 000000475 INF: FPGA: Recv ZSGSRD 31082
17-03-17 19:28:50.038 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:50.038 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:50.038 -07 000000462 INF: FPGA: Recv ZSGSRD 31085
17-03-17 19:28:50.048 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:50.048 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:50.048 -07 000000541 INF: FPGA: Recv ZSGSRD 31083
17-03-17 19:28:50.058 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:50.058 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:50.058 -07 000000593 INF: FPGA: Recv ZPIEZORD 27031
17-03-17 19:28:50.068 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:50.068 -07 000000569 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.668 V. Piezo Error = -8.9 V.
17-03-17 19:28:50.068 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31086 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31086 (-139.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31082 (-139.2 uncal um), Max = 31092 (-139.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:28:50.068 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31086, posNoise = 6, negNoise = 4
17-03-17 19:28:50.068 -07 000000569 INF: Z Motor: After move to -0.140027, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:50.068 -07 000000569 INF: Z Motor: Settle wait time = 1429 ms, measure time = 105 ms (allowed 150 ms), total time = 1534 ms
17-03-17 19:28:50.068 -07 000000569 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:28:50.118 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 19:28:50.118 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:28:50.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:50.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:50.138 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:50.138 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:28:50.138 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:50.138 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:50.138 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:28:50.138 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:28:50.138 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:28:50.138 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:28:50.148 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:28:50.148 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:28:50.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:28:50.198 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:28:50.398 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:28:50.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:28:50.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:28:50.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 19:28:50.438 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:28:50.438 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:28:50.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 19:28:50.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 19:28:50.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:50.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:28:50.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 19:28:50.538 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:50.538 -07 000000569 INF: Autofocus start
17-03-17 19:28:50.538 -07 000000569 INF: MeasureProfile start
17-03-17 19:28:50.538 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:50.548 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:28:50.548 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:28:50.548 -07 000000569 INF: MeasureProfile done
17-03-17 19:28:50.548 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:28:50.548 -07 000000569 INF: Autofocus finished
17-03-17 19:28:50.748 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:28:50.748 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:28:50.748 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.140026410649916. ----------
17-03-17 19:28:50.758 -07 000000610 INF: Cycle	26	Tile	2	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:28:50.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29096, sync = True, waitForSettling = True)
17-03-17 19:28:50.758 -07 000000610 INF: Z Motor: Moving to -0.133193 mm, started at -0.140026 mm, distance = 6.83 um
17-03-17 19:28:50.758 -07 000000610 INF: FPGA: Xmit ZDACW 29096\n [Z Motor]
17-03-17 19:28:50.758 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:28:50.768 -07 000000610 INF: FPGA: 'ZDACW 29096' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:28:50.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:50.768 -07 000000462 INF: FPGA: Recv ZDACR 29096
17-03-17 19:28:50.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:50.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:28:50.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:50.928 -07 000000431 INF: FPGA: Recv ZSGSRD 30026
17-03-17 19:28:50.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:50.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:50.938 -07 000000431 INF: FPGA: Recv ZSGSRD 30022
17-03-17 19:28:50.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:50.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:50.948 -07 000000627 INF: FPGA: Recv ZSGSRD 30021
17-03-17 19:28:50.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:50.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:50.958 -07 000000502 INF: FPGA: Recv ZSGSRD 30026
17-03-17 19:28:50.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:50.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:50.968 -07 000000541 INF: FPGA: Recv ZSGSRD 30019
17-03-17 19:28:50.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:50.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:50.978 -07 000000541 INF: FPGA: Recv ZSGSRD 30024
17-03-17 19:28:50.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:50.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:50.988 -07 000000502 INF: FPGA: Recv ZSGSRD 30021
17-03-17 19:28:50.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:50.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:50.998 -07 000000429 INF: FPGA: Recv ZSGSRD 30026
17-03-17 19:28:51.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:51.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:51.008 -07 000000429 INF: FPGA: Recv ZSGSRD 30027
17-03-17 19:28:51.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:51.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:51.018 -07 000000627 INF: FPGA: Recv ZSGSRD 30025
17-03-17 19:28:51.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:28:51.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:51.028 -07 000000462 INF: FPGA: Recv ZPIEZORD 25669
17-03-17 19:28:51.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:51.038 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.440 V. Piezo Error = -9.6 V.
17-03-17 19:28:51.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30024 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30024 (-132.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30019 (-132.4 uncal um), Max = 30027 (-132.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:28:51.038 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30024, posNoise = 3, negNoise = 5
17-03-17 19:28:51.038 -07 000000610 INF: Z Motor: After move to -0.133193, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:51.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:28:51.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:51.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:51.038 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:51.038 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:28:51.038 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:51.038 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:28:51.038 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:28:51.038 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:51.038 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:28:51.038 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:28:51.038 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:28:51.038 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:28:51.038 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:51.048 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:28:51.048 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:28:51.048 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:28:51.048 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:28:51.048 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:28:51.058 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:28:51.058 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:28:51.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 29273 150\n [Camera]
17-03-17 19:28:51.258 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:28:51.658 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:28:51.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:28:51.658 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:51.658 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:51.658 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:28:51.658 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:28:51.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:28:51.668 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:51.668 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:51.668 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 19:28:51.688 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:28:51.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:28:51.848 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29273 787
17-03-17 19:28:51.998 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:28:52.048 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:28:52.048 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:28:52.048 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:52.048 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:28:52.048 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:28:52.048 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:52.048 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:28:52.048 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:28:52.048 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:28:52.058 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:28:52.198 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:28:52.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:28:52.198 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:52.198 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:52.198 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 19:28:52.198 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:28:52.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:28:52.198 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:52.198 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:52.198 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 19:28:52.388 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:28:52.388 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:28:52.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 29273 150' command took 2 ms to send, 1324 ms to get response, and 1329 ms overall
17-03-17 19:28:52.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:28:52.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.133203897355366. ------
17-03-17 19:28:52.398 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13988 mm
17-03-17 19:28:52.398 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:28:52.398 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:52.398 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 30556, sync = True, waitForSettling = False)
17-03-17 19:28:52.398 -07 000000475 INF: Z Motor: Moving to -0.139876 mm, started at -0.133204 mm, distance = -6.67 um
17-03-17 19:28:52.398 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:28:52.398 -07 000000541 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 19:28:52.398 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:52.408 -07 000000475 INF: FPGA: Xmit ZDACW 30556\n [Z Motor]
17-03-17 19:28:52.408 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:28:52.408 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:28:52.418 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:52.418 -07 000000475 INF: FPGA: 'ZDACW 30556' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:28:52.418 -07 000000502 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:28:52.428 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:28:52.428 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:28:52.428 -07 000000541 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:52.428 -07 000000541 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:28:52.428 -07 000000541 INF: Y Motor: Moving 1342 steps-19
17-03-17 19:28:52.438 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:52.438 -07 000000569 INF: FPGA: Recv ZDACR 30556
17-03-17 19:28:52.448 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:28:52.448 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:28:52.448 -07 000000475 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 19:28:52.588 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:28:52.588 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:28:52.588 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:52.588 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:28:52.588 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:28:52.588 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:52.598 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:28:52.598 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:28:52.598 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:28:52.608 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:28:52.628 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:28:52.628 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:28:52.818 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:28:52.818 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:28:52.858 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:52.858 -07 000000431 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:28:52.868 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:28:52.868 -07 000000541 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:52.868 -07 000000541 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:28:52.868 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 19:28:53.018 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.012614,
17-03-17 19:28:53.818 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:53.818 -07 000000512 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:28:53.828 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:53.828 -07 000000541 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:53.848 -07 000000541 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:28:53.848 -07 000000541 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:28:53.848 -07 000000541 INF: Y Motor: Moved to 61.5645 after 1447 ms (table move)
17-03-17 19:28:53.848 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139876 mm (DAC = 30556)
17-03-17 19:28:53.848 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:53.848 -07 000000627 INF: FPGA: Recv ZSGSRD 31066
17-03-17 19:28:53.858 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:28:53.858 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:53.858 -07 000000608 INF: FPGA: Recv ZSGSRD 31069
17-03-17 19:28:53.868 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:28:53.868 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:53.868 -07 000000462 INF: FPGA: Recv ZSGSRD 31060
17-03-17 19:28:53.878 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:53.878 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:53.878 -07 000000462 INF: FPGA: Recv ZSGSRD 31063
17-03-17 19:28:53.888 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:53.888 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:53.888 -07 000000462 INF: FPGA: Recv ZSGSRD 31068
17-03-17 19:28:53.898 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:53.898 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:53.898 -07 000000462 INF: FPGA: Recv ZSGSRD 31068
17-03-17 19:28:53.908 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:53.908 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:53.908 -07 000000462 INF: FPGA: Recv ZSGSRD 31069
17-03-17 19:28:53.918 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:53.918 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:53.918 -07 000000462 INF: FPGA: Recv ZSGSRD 31068
17-03-17 19:28:53.928 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:53.928 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:53.928 -07 000000475 INF: FPGA: Recv ZSGSRD 31057
17-03-17 19:28:53.938 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:53.938 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:53.938 -07 000000502 INF: FPGA: Recv ZSGSRD 31059
17-03-17 19:28:53.948 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:53.948 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:53.948 -07 000000502 INF: FPGA: Recv ZPIEZORD 27008
17-03-17 19:28:53.958 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:53.958 -07 000000593 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.663 V. Piezo Error = -8.9 V.
17-03-17 19:28:53.958 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31065 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31067 (-139.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31057 (-139.0 uncal um), Max = 31069 (-139.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:28:53.958 -07 000000593 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31065, posNoise = 4, negNoise = 8
17-03-17 19:28:53.958 -07 000000593 INF: Z Motor: After move to -0.139876, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:53.958 -07 000000593 INF: Z Motor: Settle wait time = 1450 ms, measure time = 105 ms (allowed 150 ms), total time = 1555 ms
17-03-17 19:28:53.958 -07 000000593 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:28:54.008 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 19:28:54.008 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:28:54.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:54.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:54.008 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:28:54.008 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:54.008 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:54.008 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:54.008 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:28:54.008 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:28:54.018 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:54.018 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:28:54.028 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:28:54.028 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:28:54.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:28:54.078 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:28:54.278 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:28:54.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:28:54.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:28:54.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 19:28:54.318 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:28:54.318 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:28:54.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 19:28:54.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 19:28:54.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:54.398 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:28:54.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 19:28:54.418 -07 000000627 INF: Autofocus start
17-03-17 19:28:54.418 -07 000000627 INF: MeasureProfile start
17-03-17 19:28:54.418 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:54.418 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:54.428 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:28:54.428 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:28:54.428 -07 000000627 INF: MeasureProfile done
17-03-17 19:28:54.428 -07 000000627 INF: X=32  Z correction [um]=0.1299841
17-03-17 19:28:54.428 -07 000000627 INF: Autofocus finished
17-03-17 19:28:54.628 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:28:54.628 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:28:54.638 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.139891502194939. ----------
17-03-17 19:28:54.638 -07 000000610 INF: Cycle	26	Tile	3	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:28:54.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29097, sync = True, waitForSettling = True)
17-03-17 19:28:54.638 -07 000000610 INF: Z Motor: Moving to -0.133198 mm, started at -0.139892 mm, distance = 6.69 um
17-03-17 19:28:54.638 -07 000000610 INF: FPGA: Xmit ZDACW 29097\n [Z Motor]
17-03-17 19:28:54.638 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:28:54.648 -07 000000610 INF: FPGA: 'ZDACW 29097' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:28:54.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:54.648 -07 000000431 INF: FPGA: Recv ZDACR 29097
17-03-17 19:28:54.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:54.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:28:54.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:54.808 -07 000000627 INF: FPGA: Recv ZSGSRD 30027
17-03-17 19:28:54.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:54.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:54.818 -07 000000431 INF: FPGA: Recv ZSGSRD 30023
17-03-17 19:28:54.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:54.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:54.828 -07 000000541 INF: FPGA: Recv ZSGSRD 30022
17-03-17 19:28:54.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:54.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:54.838 -07 000000593 INF: FPGA: Recv ZSGSRD 30015
17-03-17 19:28:54.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:54.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:54.848 -07 000000593 INF: FPGA: Recv ZSGSRD 30018
17-03-17 19:28:54.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:54.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:54.858 -07 000000608 INF: FPGA: Recv ZSGSRD 30027
17-03-17 19:28:54.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:54.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:54.868 -07 000000627 INF: FPGA: Recv ZSGSRD 30027
17-03-17 19:28:54.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:54.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:54.878 -07 000000462 INF: FPGA: Recv ZSGSRD 30026
17-03-17 19:28:54.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:54.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:54.888 -07 000000541 INF: FPGA: Recv ZSGSRD 30022
17-03-17 19:28:54.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:54.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:54.898 -07 000000429 INF: FPGA: Recv ZSGSRD 30024
17-03-17 19:28:54.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:54.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:54.908 -07 000000512 INF: FPGA: Recv ZPIEZORD 25648
17-03-17 19:28:54.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:54.918 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.440 V. Piezo Error = -9.6 V.
17-03-17 19:28:54.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30023 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30024 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30015 (-132.4 uncal um), Max = 30027 (-132.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:28:54.918 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30023, posNoise = 4, negNoise = 8
17-03-17 19:28:54.918 -07 000000610 INF: Z Motor: After move to -0.133198, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:54.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:28:54.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:54.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:54.918 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:54.918 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:28:54.918 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:28:54.918 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:28:54.918 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:54.918 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:54.918 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:28:54.918 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:28:54.918 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:28:54.918 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:28:54.928 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:28:54.928 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:28:54.928 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:54.928 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:28:54.928 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:28:54.928 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:28:54.938 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:28:54.938 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:28:54.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 29274 150\n [Camera]
17-03-17 19:28:55.138 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:28:55.538 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:28:55.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:28:55.548 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:55.548 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:55.548 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 19:28:55.548 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:28:55.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:28:55.548 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:55.548 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:55.548 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 19:28:55.728 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29274 787
17-03-17 19:28:55.878 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:28:55.918 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:28:55.918 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:28:55.918 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:55.918 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:28:55.918 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:28:55.918 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:55.928 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:28:55.928 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:28:55.928 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:28:55.938 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:28:56.078 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:28:56.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:28:56.078 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:56.208 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:28:56.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:28:56.218 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:56.218 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:56.218 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 19:28:56.218 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:56.218 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:28:56.268 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:28:56.268 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:28:56.268 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 29274 150' command took 2 ms to send, 1324 ms to get response, and 1331 ms overall
17-03-17 19:28:56.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:28:56.268 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.133197473143224. ------
17-03-17 19:28:56.268 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:56.268 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13964 mm
17-03-17 19:28:56.268 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:28:56.278 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:56.278 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:28:56.278 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:28:56.278 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30505, sync = True, waitForSettling = False)
17-03-17 19:28:56.278 -07 000000462 INF: Z Motor: Moving to -0.139643 mm, started at -0.133197 mm, distance = -6.45 um
17-03-17 19:28:56.278 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:28:56.278 -07 000000431 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 19:28:56.288 -07 000000462 INF: FPGA: Xmit ZDACW 30505\n [Z Motor]
17-03-17 19:28:56.288 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:28:56.298 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:56.298 -07 000000462 INF: FPGA: 'ZDACW 30505' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:28:56.298 -07 000000429 INF: FPGA: Recv YRDPOS 126085
17-03-17 19:28:56.308 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:28:56.308 -07 000000431 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:56.308 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:56.308 -07 000000541 INF: FPGA: Recv ZDACR 30505
17-03-17 19:28:56.308 -07 000000431 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:28:56.308 -07 000000431 INF: Y Motor: Moving 1340 steps-17
17-03-17 19:28:56.318 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:28:56.318 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:28:56.318 -07 000000462 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 19:28:56.478 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:28:56.478 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 19:28:56.588 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:28:56.598 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:28:56.598 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:56.598 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:28:56.598 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:28:56.598 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:56.598 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:28:56.598 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:28:56.598 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-17 19:28:56.608 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:28:56.688 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:28:56.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:28:56.688 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 19:28:56.688 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-17 19:28:56.728 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:56.728 -07 000000593 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:28:56.738 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:28:56.738 -07 000000431 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:56.738 -07 000000431 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:28:56.738 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.838 mm, average velocity = 2.206 mm/sec
17-03-17 19:28:57.688 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:28:57.688 -07 000000502 INF: FPGA: Recv YRDPOS 127788
17-03-17 19:28:57.698 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:57.698 -07 000000431 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:28:57.718 -07 000000431 INF: Y Motor: After move to 62.402607, error = -0.006123, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:28:57.718 -07 000000431 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:28:57.718 -07 000000431 INF: Y Motor: Moved to 62.3965 after 1436 ms (table move)
17-03-17 19:28:57.718 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139643 mm (DAC = 30505)
17-03-17 19:28:57.718 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:57.718 -07 000000593 INF: FPGA: Recv ZSGSRD 31035
17-03-17 19:28:57.728 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:28:57.728 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:57.728 -07 000000627 INF: FPGA: Recv ZSGSRD 31023
17-03-17 19:28:57.738 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:57.738 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:57.738 -07 000000431 INF: FPGA: Recv ZSGSRD 31031
17-03-17 19:28:57.748 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:57.748 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:57.748 -07 000000569 INF: FPGA: Recv ZSGSRD 31035
17-03-17 19:28:57.758 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:57.758 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:57.758 -07 000000593 INF: FPGA: Recv ZSGSRD 31031
17-03-17 19:28:57.768 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:57.768 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:57.768 -07 000000627 INF: FPGA: Recv ZSGSRD 31029
17-03-17 19:28:57.778 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:57.778 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:57.778 -07 000000431 INF: FPGA: Recv ZSGSRD 31019
17-03-17 19:28:57.788 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:57.788 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:57.788 -07 000000569 INF: FPGA: Recv ZSGSRD 31024
17-03-17 19:28:57.798 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:57.798 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:57.798 -07 000000593 INF: FPGA: Recv ZSGSRD 31027
17-03-17 19:28:57.808 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:57.808 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:57.808 -07 000000551 INF: FPGA: Recv ZSGSRD 31028
17-03-17 19:28:57.818 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:57.818 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:57.818 -07 000000431 INF: FPGA: Recv ZPIEZORD 26986
17-03-17 19:28:57.828 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:57.828 -07 000000512 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.655 V. Piezo Error = -8.9 V.
17-03-17 19:28:57.828 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31028 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31028 (-138.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31019 (-138.8 uncal um), Max = 31035 (-138.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:28:57.828 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31028, posNoise = 7, negNoise = 9
17-03-17 19:28:57.828 -07 000000512 INF: Z Motor: After move to -0.139643, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:57.828 -07 000000512 INF: Z Motor: Settle wait time = 1439 ms, measure time = 107 ms (allowed 150 ms), total time = 1546 ms
17-03-17 19:28:57.828 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:28:57.878 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 19:28:57.878 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:28:57.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:57.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:57.878 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:57.878 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:57.878 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:28:57.878 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:57.878 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:28:57.878 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:28:57.888 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:57.888 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:28:57.888 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:28:57.888 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:28:57.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:28:57.948 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:28:58.138 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:28:58.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:28:58.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:28:58.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 19:28:58.178 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:28:58.178 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 19:28:58.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 19:28:58.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:28:58.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:58.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:28:58.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:28:58.278 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:28:58.278 -07 000000438 INF: Autofocus start
17-03-17 19:28:58.278 -07 000000438 INF: MeasureProfile start
17-03-17 19:28:58.278 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:28:58.288 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:28:58.288 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:28:58.298 -07 000000438 INF: MeasureProfile done
17-03-17 19:28:58.298 -07 000000438 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:28:58.298 -07 000000438 INF: Autofocus finished
17-03-17 19:28:58.388 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.031682,
17-03-17 19:28:58.488 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:28:58.488 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:28:58.498 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.396484375, Z-position -0.139653806345694. ----------
17-03-17 19:28:58.508 -07 000000610 INF: Cycle	26	Tile	4	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:28:58.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29000, sync = True, waitForSettling = True)
17-03-17 19:28:58.508 -07 000000610 INF: Z Motor: Moving to -0.132753 mm, started at -0.139654 mm, distance = 6.90 um
17-03-17 19:28:58.508 -07 000000610 INF: FPGA: Xmit ZDACW 29000\n [Z Motor]
17-03-17 19:28:58.508 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:28:58.518 -07 000000610 INF: FPGA: 'ZDACW 29000' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:28:58.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:28:58.518 -07 000000551 INF: FPGA: Recv ZDACR 29000
17-03-17 19:28:58.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:58.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:28:58.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:58.678 -07 000000431 INF: FPGA: Recv ZSGSRD 29952
17-03-17 19:28:58.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:28:58.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:58.688 -07 000000623 INF: FPGA: Recv ZSGSRD 29962
17-03-17 19:28:58.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:58.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:58.708 -07 000000593 INF: FPGA: Recv ZSGSRD 29958
17-03-17 19:28:58.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:28:58.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:58.728 -07 000000438 INF: FPGA: Recv ZSGSRD 29953
17-03-17 19:28:58.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:28:58.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:58.748 -07 000000608 INF: FPGA: Recv ZSGSRD 29949
17-03-17 19:28:58.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:28:58.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:58.768 -07 000000551 INF: FPGA: Recv ZSGSRD 29958
17-03-17 19:28:58.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:28:58.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:58.788 -07 000000012 INF: FPGA: Recv ZSGSRD 29957
17-03-17 19:28:58.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:28:58.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:58.798 -07 000000593 INF: FPGA: Recv ZSGSRD 29951
17-03-17 19:28:58.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:58.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:58.808 -07 000000569 INF: FPGA: Recv ZSGSRD 29963
17-03-17 19:28:58.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:58.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:28:58.818 -07 000000502 INF: FPGA: Recv ZSGSRD 29949
17-03-17 19:28:58.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:58.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:28:58.828 -07 000000012 INF: FPGA: Recv ZPIEZORD 25587
17-03-17 19:28:58.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:28:58.838 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.425 V. Piezo Error = -9.6 V.
17-03-17 19:28:58.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29955 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29955 (-132.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29949 (-131.9 uncal um), Max = 29963 (-132.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:28:58.838 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29955, posNoise = 8, negNoise = 6
17-03-17 19:28:58.838 -07 000000610 INF: Z Motor: After move to -0.132753, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:28:58.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 326 ms)
17-03-17 19:28:58.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:28:58.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:28:58.838 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:28:58.838 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:28:58.838 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:28:58.838 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:28:58.838 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:28:58.838 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:28:58.838 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:28:58.838 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:28:58.838 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:28:58.838 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:28:58.848 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:28:58.848 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:28:58.848 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:28:58.848 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:28:58.848 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:28:58.848 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:28:58.858 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:28:58.858 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:28:58.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 29176 150\n [Camera]
17-03-17 19:28:59.058 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:28:59.458 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:28:59.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:28:59.458 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:28:59.458 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:28:59.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:28:59.458 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:28:59.468 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:28:59.468 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-17 19:28:59.468 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:28:59.468 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:28:59.648 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29176 787
17-03-17 19:28:59.798 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:28:59.838 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 19:28:59.838 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 19:28:59.838 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:59.838 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 19:28:59.838 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 19:28:59.838 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:28:59.848 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:28:59.848 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:28:59.848 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:28:59.858 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:28:59.998 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:28:59.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:28:59.998 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:00.118 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:29:00.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:29:00.118 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:00.128 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:00.128 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) start.
17-03-17 19:29:00.128 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:00.128 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:29:00.188 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:29:00.188 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:29:00.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 29176 150' command took 2 ms to send, 1322 ms to get response, and 1329 ms overall
17-03-17 19:29:00.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:29:00.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.396484375, Z-Position -0.132760626717584. ------
17-03-17 19:29:00.188 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13916 mm
17-03-17 19:29:00.188 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:29:00.188 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:00.188 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:29:00.188 -07 000000438 INF: Y Motor: Moving to 63.2326 mm, started at 62.3965 mm, delta = 0.8361 mm
17-03-17 19:29:00.188 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30399, sync = True, waitForSettling = False)
17-03-17 19:29:00.188 -07 000000502 INF: Z Motor: Moving to -0.139158 mm, started at -0.132761 mm, distance = -6.40 um
17-03-17 19:29:00.198 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:00.198 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:29:00.198 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:00.198 -07 000000608 INF: FPGA: Recv YRDPOS 127788
17-03-17 19:29:00.208 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:00.208 -07 000000438 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:00.208 -07 000000438 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:29:00.208 -07 000000438 INF: Y Motor: Moving 1338 steps-14
17-03-17 19:29:00.208 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:29:00.218 -07 000000502 INF: FPGA: Xmit ZDACW 30399\n [Z Motor]
17-03-17 19:29:00.218 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:29:00.228 -07 000000502 INF: FPGA: 'ZDACW 30399' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:29:00.228 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:29:00.238 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:00.238 -07 000000551 INF: FPGA: Recv ZDACR 30399
17-03-17 19:29:00.248 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:29:00.248 -07 000000502 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 19:29:00.408 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:29:00.408 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 213 ms overall
17-03-17 19:29:00.498 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:29:00.498 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:29:00.498 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:00.508 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:00.508 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:29:00.508 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:29:00.508 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:00.508 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:00.508 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 19:29:00.508 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:29:00.608 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:29:00.608 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 19:29:00.658 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:00.658 -07 000000627 INF: FPGA: Recv YRDPOS 129484
17-03-17 19:29:00.668 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:00.668 -07 000000438 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:00.668 -07 000000438 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:29:00.668 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.836 mm, average velocity = 2.090 mm/sec
17-03-17 19:29:01.618 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:01.618 -07 000000569 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:29:01.628 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:01.628 -07 000000438 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:01.648 -07 000000438 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:29:01.648 -07 000000438 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:29:01.648 -07 000000438 INF: Y Motor: Moved to 63.2251 after 1451 ms (table move)
17-03-17 19:29:01.648 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139158 mm (DAC = 30399)
17-03-17 19:29:01.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:01.648 -07 000000569 INF: FPGA: Recv ZSGSRD 30952
17-03-17 19:29:01.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:29:01.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:01.658 -07 000000593 INF: FPGA: Recv ZSGSRD 30950
17-03-17 19:29:01.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:01.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:01.668 -07 000000608 INF: FPGA: Recv ZSGSRD 30962
17-03-17 19:29:01.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:01.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:01.678 -07 000000012 INF: FPGA: Recv ZSGSRD 30956
17-03-17 19:29:01.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:01.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:01.688 -07 000000623 INF: FPGA: Recv ZSGSRD 30950
17-03-17 19:29:01.688 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:29:01.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:29:01.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:01.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:01.698 -07 000000593 INF: FPGA: Recv ZSGSRD 30947
17-03-17 19:29:01.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:01.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:01.708 -07 000000541 INF: FPGA: Recv ZSGSRD 30950
17-03-17 19:29:01.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:01.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:01.718 -07 000000438 INF: FPGA: Recv ZSGSRD 30951
17-03-17 19:29:01.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:01.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:01.728 -07 000000623 INF: FPGA: Recv ZSGSRD 30951
17-03-17 19:29:01.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:01.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:01.738 -07 000000502 INF: FPGA: Recv ZSGSRD 30953
17-03-17 19:29:01.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:01.748 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:01.748 -07 000000569 INF: FPGA: Recv ZPIEZORD 26877
17-03-17 19:29:01.758 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:01.758 -07 000000431 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.639 V. Piezo Error = -9.0 V.
17-03-17 19:29:01.758 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30952 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30951 (-138.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30947 (-138.3 uncal um), Max = 30962 (-138.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:29:01.758 -07 000000431 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30952, posNoise = 10, negNoise = 5
17-03-17 19:29:01.758 -07 000000431 INF: Z Motor: After move to -0.139158, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:01.758 -07 000000431 INF: Z Motor: Settle wait time = 1454 ms, measure time = 107 ms (allowed 150 ms), total time = 1561 ms
17-03-17 19:29:01.758 -07 000000431 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:29:01.808 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-17 19:29:01.808 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:29:01.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:01.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:01.808 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:01.808 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:01.808 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:29:01.808 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:01.808 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:29:01.808 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:29:01.818 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:01.818 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:29:01.818 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:29:01.818 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:29:01.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:29:01.868 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:29:02.068 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:29:02.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:29:02.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:29:02.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 19:29:02.108 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:29:02.108 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 19:29:02.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:29:02.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:29:02.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:02.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:29:02.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:29:02.208 -07 000000623 INF: Autofocus start
17-03-17 19:29:02.208 -07 000000623 INF: MeasureProfile start
17-03-17 19:29:02.208 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:02.208 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:02.218 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:29:02.218 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:29:02.228 -07 000000623 INF: MeasureProfile done
17-03-17 19:29:02.228 -07 000000623 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:29:02.228 -07 000000623 INF: Autofocus finished
17-03-17 19:29:02.418 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:29:02.418 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:29:02.418 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.13916556622292. ----------
17-03-17 19:29:02.428 -07 000000610 INF: Cycle	26	Tile	5	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:29:02.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28894, sync = True, waitForSettling = True)
17-03-17 19:29:02.428 -07 000000610 INF: Z Motor: Moving to -0.132268 mm, started at -0.139166 mm, distance = 6.90 um
17-03-17 19:29:02.428 -07 000000610 INF: FPGA: Xmit ZDACW 28894\n [Z Motor]
17-03-17 19:29:02.428 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:29:02.438 -07 000000610 INF: FPGA: 'ZDACW 28894' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:29:02.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:02.438 -07 000000551 INF: FPGA: Recv ZDACR 28894
17-03-17 19:29:02.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:02.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:29:02.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:02.598 -07 000000541 INF: FPGA: Recv ZSGSRD 29884
17-03-17 19:29:02.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:02.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:02.608 -07 000000608 INF: FPGA: Recv ZSGSRD 29884
17-03-17 19:29:02.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:02.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:02.618 -07 000000431 INF: FPGA: Recv ZSGSRD 29875
17-03-17 19:29:02.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:02.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:02.628 -07 000000012 INF: FPGA: Recv ZSGSRD 29877
17-03-17 19:29:02.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:02.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:02.638 -07 000000502 INF: FPGA: Recv ZSGSRD 29881
17-03-17 19:29:02.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:02.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:02.648 -07 000000608 INF: FPGA: Recv ZSGSRD 29879
17-03-17 19:29:02.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:02.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:02.658 -07 000000431 INF: FPGA: Recv ZSGSRD 29872
17-03-17 19:29:02.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:02.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:02.668 -07 000000593 INF: FPGA: Recv ZSGSRD 29879
17-03-17 19:29:02.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:02.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:02.678 -07 000000569 INF: FPGA: Recv ZSGSRD 29872
17-03-17 19:29:02.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:02.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:02.688 -07 000000502 INF: FPGA: Recv ZSGSRD 29883
17-03-17 19:29:02.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:02.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:02.698 -07 000000512 INF: FPGA: Recv ZPIEZORD 25519
17-03-17 19:29:02.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:02.708 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.409 V. Piezo Error = -9.6 V.
17-03-17 19:29:02.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29879 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29879 (-131.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29872 (-131.4 uncal um), Max = 29884 (-131.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:29:02.708 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29879, posNoise = 5, negNoise = 7
17-03-17 19:29:02.708 -07 000000610 INF: Z Motor: After move to -0.132268, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:02.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:29:02.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:02.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:02.708 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:29:02.708 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:02.708 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:29:02.708 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:29:02.708 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:02.708 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:02.708 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:29:02.708 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:29:02.708 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:29:02.708 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:29:02.718 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:29:02.718 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:29:02.718 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:02.718 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:29:02.728 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:29:02.728 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:29:02.728 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:29:02.728 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:29:02.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 29070 150\n [Camera]
17-03-17 19:29:02.928 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:29:03.328 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:29:03.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:29:03.328 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:03.328 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:03.328 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:29:03.328 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:29:03.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:29:03.328 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:03.328 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:03.328 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:29:03.518 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29070 787
17-03-17 19:29:03.668 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:29:03.708 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:29:03.708 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:29:03.708 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:03.708 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:29:03.708 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:29:03.708 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:03.708 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:03.708 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:29:03.708 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:03.718 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:29:03.808 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.009895,
17-03-17 19:29:03.868 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:29:03.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:29:03.868 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:03.868 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:29:03.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:29:03.868 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:03.878 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:03.878 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:29:03.878 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:03.878 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:29:04.058 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:29:04.058 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:29:04.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 29070 150' command took 2 ms to send, 1322 ms to get response, and 1330 ms overall
17-03-17 19:29:04.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:29:04.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.132272386594811. ------
17-03-17 19:29:04.068 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:04.068 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13876 mm
17-03-17 19:29:04.068 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:29:04.068 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:04.068 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:29:04.068 -07 000000623 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 19:29:04.068 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30311, sync = True, waitForSettling = False)
17-03-17 19:29:04.068 -07 000000012 INF: Z Motor: Moving to -0.138755 mm, started at -0.132272 mm, distance = -6.48 um
17-03-17 19:29:04.078 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:29:04.078 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:04.078 -07 000000502 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:29:04.088 -07 000000012 INF: FPGA: Xmit ZDACW 30311\n [Z Motor]
17-03-17 19:29:04.088 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:29:04.088 -07 000000623 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:04.088 -07 000000623 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:29:04.088 -07 000000623 INF: Y Motor: Moving 1340 steps-16
17-03-17 19:29:04.088 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:29:04.098 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:29:04.098 -07 000000012 INF: FPGA: 'ZDACW 30311' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:29:04.108 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:29:04.118 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:04.118 -07 000000475 INF: FPGA: Recv ZDACR 30311
17-03-17 19:29:04.128 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:29:04.128 -07 000000012 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 19:29:04.248 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:29:04.248 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:29:04.248 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:04.248 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:29:04.258 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:29:04.258 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:04.258 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:04.258 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:04.258 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:29:04.268 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:29:04.298 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:29:04.298 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:29:04.478 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:29:04.478 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:29:04.518 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:04.518 -07 000000429 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:29:04.528 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:29:04.528 -07 000000623 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:04.528 -07 000000623 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 19:29:04.528 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 19:29:05.478 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:05.478 -07 000000551 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:29:05.488 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:05.488 -07 000000623 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:05.498 -07 000000623 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:29:05.498 -07 000000623 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:29:05.498 -07 000000623 INF: Y Motor: Moved to 64.0576 after 1432 ms (table move)
17-03-17 19:29:05.508 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138755 mm (DAC = 30311)
17-03-17 19:29:05.508 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:05.508 -07 000000429 INF: FPGA: Recv ZSGSRD 30891
17-03-17 19:29:05.518 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:29:05.518 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:05.518 -07 000000475 INF: FPGA: Recv ZSGSRD 30888
17-03-17 19:29:05.528 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:05.528 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:05.528 -07 000000012 INF: FPGA: Recv ZSGSRD 30890
17-03-17 19:29:05.538 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:05.538 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:05.538 -07 000000462 INF: FPGA: Recv ZSGSRD 30895
17-03-17 19:29:05.548 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:05.548 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:05.548 -07 000000502 INF: FPGA: Recv ZSGSRD 30893
17-03-17 19:29:05.558 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:05.558 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:05.558 -07 000000569 INF: FPGA: Recv ZSGSRD 30891
17-03-17 19:29:05.568 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:05.568 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:05.568 -07 000000012 INF: FPGA: Recv ZSGSRD 30888
17-03-17 19:29:05.578 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:05.578 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:05.578 -07 000000462 INF: FPGA: Recv ZSGSRD 30887
17-03-17 19:29:05.588 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:05.588 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:05.588 -07 000000429 INF: FPGA: Recv ZSGSRD 30886
17-03-17 19:29:05.598 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:05.598 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:05.598 -07 000000627 INF: FPGA: Recv ZSGSRD 30892
17-03-17 19:29:05.608 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:05.608 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:05.608 -07 000000623 INF: FPGA: Recv ZPIEZORD 26876
17-03-17 19:29:05.618 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:05.618 -07 000000512 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.625 V. Piezo Error = -8.8 V.
17-03-17 19:29:05.618 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30890 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30890 (-138.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30886 (-137.9 uncal um), Max = 30895 (-138.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:29:05.618 -07 000000512 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30890, posNoise = 5, negNoise = 4
17-03-17 19:29:05.618 -07 000000512 INF: Z Motor: After move to -0.138755, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:05.618 -07 000000512 INF: Z Motor: Settle wait time = 1435 ms, measure time = 109 ms (allowed 150 ms), total time = 1544 ms
17-03-17 19:29:05.618 -07 000000512 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 19:29:05.668 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 19:29:05.668 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:29:05.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:05.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:05.668 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:05.668 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:29:05.668 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:05.668 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:05.668 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:29:05.668 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:29:05.678 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:05.678 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:29:05.688 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 19:29:05.688 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:29:05.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:29:05.728 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:29:05.928 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:29:05.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:29:05.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:29:05.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:29:05.968 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:29:05.968 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 19:29:05.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 19:29:06.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 19:29:06.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:06.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:29:06.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 19:29:06.168 -07 000000627 INF: Autofocus start
17-03-17 19:29:06.168 -07 000000627 INF: MeasureProfile start
17-03-17 19:29:06.168 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:06.168 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:06.178 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:29:06.178 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:29:06.178 -07 000000627 INF: MeasureProfile done
17-03-17 19:29:06.178 -07 000000627 INF: X=24  Z correction [um]=0.09150101
17-03-17 19:29:06.178 -07 000000627 INF: Autofocus finished
17-03-17 19:29:06.378 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:29:06.378 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:29:06.388 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.138767265070131. ----------
17-03-17 19:29:06.388 -07 000000610 INF: Cycle	26	Tile	6	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:29:06.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28844, sync = True, waitForSettling = True)
17-03-17 19:29:06.388 -07 000000610 INF: Z Motor: Moving to -0.132039 mm, started at -0.138767 mm, distance = 6.73 um
17-03-17 19:29:06.388 -07 000000610 INF: FPGA: Xmit ZDACW 28844\n [Z Motor]
17-03-17 19:29:06.388 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:29:06.398 -07 000000610 INF: FPGA: 'ZDACW 28844' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:29:06.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:06.398 -07 000000475 INF: FPGA: Recv ZDACR 28844
17-03-17 19:29:06.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:06.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:29:06.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:06.558 -07 000000012 INF: FPGA: Recv ZSGSRD 29844
17-03-17 19:29:06.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:06.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:06.568 -07 000000627 INF: FPGA: Recv ZSGSRD 29852
17-03-17 19:29:06.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:06.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:06.578 -07 000000623 INF: FPGA: Recv ZSGSRD 29837
17-03-17 19:29:06.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:06.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:06.588 -07 000000608 INF: FPGA: Recv ZSGSRD 29838
17-03-17 19:29:06.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:06.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:06.598 -07 000000462 INF: FPGA: Recv ZSGSRD 29847
17-03-17 19:29:06.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:06.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:06.608 -07 000000551 INF: FPGA: Recv ZSGSRD 29848
17-03-17 19:29:06.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:06.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:06.618 -07 000000512 INF: FPGA: Recv ZSGSRD 29846
17-03-17 19:29:06.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:06.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:06.628 -07 000000475 INF: FPGA: Recv ZSGSRD 29846
17-03-17 19:29:06.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:06.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:06.638 -07 000000462 INF: FPGA: Recv ZSGSRD 29849
17-03-17 19:29:06.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:06.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:06.648 -07 000000429 INF: FPGA: Recv ZSGSRD 29846
17-03-17 19:29:06.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:06.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:06.658 -07 000000569 INF: FPGA: Recv ZPIEZORD 25534
17-03-17 19:29:06.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:06.668 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -9.5 V.
17-03-17 19:29:06.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29845 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29846 (-131.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29837 (-131.2 uncal um), Max = 29852 (-131.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:29:06.668 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29845, posNoise = 7, negNoise = 8
17-03-17 19:29:06.668 -07 000000610 INF: Z Motor: After move to -0.132039, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:06.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:29:06.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:06.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:06.668 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:06.668 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:06.668 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:29:06.668 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:29:06.668 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:29:06.668 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:06.668 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:29:06.668 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:29:06.668 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:29:06.668 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:29:06.678 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:29:06.678 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:29:06.678 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:29:06.678 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:29:06.688 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:29:06.688 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:29:06.688 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:29:06.688 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:29:06.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 29020 150\n [Camera]
17-03-17 19:29:06.688 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:29:06.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:29:06.888 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:29:07.288 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:29:07.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:29:07.288 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:07.288 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:07.288 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:29:07.288 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:29:07.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:29:07.298 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:07.298 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:07.298 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:29:07.478 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29020 787
17-03-17 19:29:07.628 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:29:07.678 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:29:07.678 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:29:07.678 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:07.678 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 19:29:07.678 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:29:07.678 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:07.678 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:07.678 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:29:07.688 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:07.688 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:29:07.828 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:29:07.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:29:07.828 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:07.828 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:07.828 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:29:07.828 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:29:07.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:29:07.828 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:07.828 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:07.828 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:29:08.018 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:29:08.018 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:29:08.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 29020 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-17 19:29:08.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:29:08.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.132053963381991. ------
17-03-17 19:29:08.028 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13859 mm
17-03-17 19:29:08.028 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:29:08.028 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:08.028 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:29:08.028 -07 000000541 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 19:29:08.028 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30275, sync = True, waitForSettling = False)
17-03-17 19:29:08.028 -07 000000512 INF: Z Motor: Moving to -0.138590 mm, started at -0.132054 mm, distance = -6.54 um
17-03-17 19:29:08.028 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:08.038 -07 000000512 INF: FPGA: Xmit ZDACW 30275\n [Z Motor]
17-03-17 19:29:08.038 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:29:08.038 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:29:08.048 -07 000000512 INF: FPGA: 'ZDACW 30275' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:29:08.048 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:08.048 -07 000000475 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:29:08.058 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:29:08.058 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:29:08.058 -07 000000541 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:08.058 -07 000000541 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:29:08.058 -07 000000541 INF: Y Motor: Moving 1336 steps-10
17-03-17 19:29:08.068 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:08.068 -07 000000593 INF: FPGA: Recv ZDACR 30275
17-03-17 19:29:08.078 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:29:08.078 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:29:08.078 -07 000000512 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 19:29:08.218 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:29:08.218 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:29:08.218 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:08.218 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:29:08.218 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:29:08.218 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:08.218 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:08.218 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:29:08.218 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:29:08.228 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:29:08.258 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:29:08.258 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 19:29:08.448 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 19:29:08.448 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:29:08.488 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:08.488 -07 000000512 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:29:08.498 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:29:08.498 -07 000000541 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:08.498 -07 000000541 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:29:08.498 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.098 mm/sec
17-03-17 19:29:09.168 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.999021,
17-03-17 19:29:09.448 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:09.448 -07 000000429 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:29:09.458 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:09.458 -07 000000541 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:09.478 -07 000000541 INF: Y Motor: After move to 64.892609, error = -0.012726, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:29:09.478 -07 000000541 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:29:09.478 -07 000000541 INF: Y Motor: Moved to 64.8799 after 1449 ms (table move)
17-03-17 19:29:09.478 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138590 mm (DAC = 30275)
17-03-17 19:29:09.478 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:09.488 -07 000000512 INF: FPGA: Recv ZSGSRD 30875
17-03-17 19:29:09.488 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:29:09.498 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:09.498 -07 000000431 INF: FPGA: Recv ZSGSRD 30860
17-03-17 19:29:09.508 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:29:09.508 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:09.508 -07 000000623 INF: FPGA: Recv ZSGSRD 30858
17-03-17 19:29:09.518 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:09.528 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:09.528 -07 000000593 INF: FPGA: Recv ZSGSRD 30869
17-03-17 19:29:09.538 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:29:09.538 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:09.538 -07 000000429 INF: FPGA: Recv ZSGSRD 30859
17-03-17 19:29:09.548 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:09.558 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:09.558 -07 000000512 INF: FPGA: Recv ZSGSRD 30861
17-03-17 19:29:09.568 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:29:09.578 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:09.578 -07 000000462 INF: FPGA: Recv ZSGSRD 30861
17-03-17 19:29:09.588 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:29:09.588 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:09.588 -07 000000431 INF: FPGA: Recv ZSGSRD 30870
17-03-17 19:29:09.598 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:09.608 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:09.608 -07 000000627 INF: FPGA: Recv ZSGSRD 30870
17-03-17 19:29:09.618 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:29:09.618 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:09.618 -07 000000012 INF: FPGA: Recv ZSGSRD 30862
17-03-17 19:29:09.628 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:09.628 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:09.628 -07 000000475 INF: FPGA: Recv ZPIEZORD 26841
17-03-17 19:29:09.638 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:09.638 -07 000000502 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.620 V. Piezo Error = -8.9 V.
17-03-17 19:29:09.638 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30864 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30862 (-137.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30858 (-137.8 uncal um), Max = 30875 (-137.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:29:09.638 -07 000000502 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30864, posNoise = 11, negNoise = 6
17-03-17 19:29:09.638 -07 000000502 INF: Z Motor: After move to -0.138590, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:09.638 -07 000000502 INF: Z Motor: Settle wait time = 1452 ms, measure time = 155 ms (allowed 150 ms), total time = 1607 ms
17-03-17 19:29:09.638 -07 000000502 INF: Z Motor: Warning: Actual position measuring time = 155 ms, longer than max expected time of 150 ms
17-03-17 19:29:09.638 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-17 19:29:09.638 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:29:09.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:09.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:09.638 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:09.638 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:09.638 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:29:09.638 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:09.638 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:29:09.638 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:29:09.648 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:09.648 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:29:09.658 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 19:29:09.658 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:29:09.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:29:09.708 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:29:09.908 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:29:09.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:29:09.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:29:09.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) start.
17-03-17 19:29:09.938 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:29:09.948 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 19:29:09.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 287 ms overall
17-03-17 19:29:10.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) end. Duration was 136 ms.
17-03-17 19:29:10.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:10.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:29:10.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 140 ms.
17-03-17 19:29:10.148 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:10.148 -07 000000502 INF: Autofocus start
17-03-17 19:29:10.148 -07 000000502 INF: MeasureProfile start
17-03-17 19:29:10.148 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:10.158 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:29:10.158 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:29:10.158 -07 000000502 INF: MeasureProfile done
17-03-17 19:29:10.158 -07 000000502 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:29:10.158 -07 000000502 INF: Autofocus finished
17-03-17 19:29:10.358 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:29:10.358 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:29:10.358 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8798828125, Z-position -0.138600235554445. ----------
17-03-17 19:29:10.358 -07 000000610 INF: Cycle	26	Tile	7	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:29:10.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28770, sync = True, waitForSettling = True)
17-03-17 19:29:10.368 -07 000000610 INF: Z Motor: Moving to -0.131701 mm, started at -0.138600 mm, distance = 6.90 um
17-03-17 19:29:10.368 -07 000000610 INF: FPGA: Xmit ZDACW 28770\n [Z Motor]
17-03-17 19:29:10.368 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:29:10.378 -07 000000610 INF: FPGA: 'ZDACW 28770' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:10.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:10.378 -07 000000462 INF: FPGA: Recv ZDACR 28770
17-03-17 19:29:10.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:10.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:29:10.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:10.538 -07 000000012 INF: FPGA: Recv ZSGSRD 29784
17-03-17 19:29:10.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:10.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:10.548 -07 000000627 INF: FPGA: Recv ZSGSRD 29795
17-03-17 19:29:10.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:10.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:10.558 -07 000000438 INF: FPGA: Recv ZSGSRD 29782
17-03-17 19:29:10.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:10.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:10.568 -07 000000623 INF: FPGA: Recv ZSGSRD 29787
17-03-17 19:29:10.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:10.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:10.578 -07 000000431 INF: FPGA: Recv ZSGSRD 29790
17-03-17 19:29:10.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:10.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:10.588 -07 000000429 INF: FPGA: Recv ZSGSRD 29790
17-03-17 19:29:10.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:10.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:10.598 -07 000000462 INF: FPGA: Recv ZSGSRD 29791
17-03-17 19:29:10.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:10.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:10.608 -07 000000551 INF: FPGA: Recv ZSGSRD 29785
17-03-17 19:29:10.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:10.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:10.618 -07 000000012 INF: FPGA: Recv ZSGSRD 29787
17-03-17 19:29:10.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:10.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:10.628 -07 000000608 INF: FPGA: Recv ZSGSRD 29793
17-03-17 19:29:10.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:10.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:10.638 -07 000000627 INF: FPGA: Recv ZPIEZORD 25451
17-03-17 19:29:10.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:10.648 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.5 V.
17-03-17 19:29:10.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29788 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29788 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29782 (-130.9 uncal um), Max = 29795 (-130.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:29:10.648 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29788, posNoise = 7, negNoise = 6
17-03-17 19:29:10.648 -07 000000610 INF: Z Motor: After move to -0.131701, error = 0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:10.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:29:10.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:10.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:10.648 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:10.648 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:10.648 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:29:10.648 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:10.648 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:29:10.648 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:29:10.648 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:29:10.648 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:29:10.648 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:29:10.648 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:29:10.658 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:29:10.658 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:29:10.658 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:29:10.658 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:29:10.668 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 19:29:10.668 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 19:29:10.668 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:29:10.668 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:29:10.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28947 150\n [Camera]
17-03-17 19:29:10.868 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:29:11.278 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:29:11.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:29:11.278 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:11.278 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:11.278 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:29:11.278 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:29:11.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:29:11.278 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:11.278 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:11.278 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:29:11.468 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28947 787
17-03-17 19:29:11.618 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:29:11.658 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:29:11.658 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:29:11.658 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:11.658 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:29:11.658 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:29:11.658 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:11.658 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:11.658 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:29:11.658 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:11.668 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:29:11.688 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:29:11.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:29:11.808 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:29:11.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:29:11.808 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:11.808 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:11.808 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 19:29:11.818 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:29:11.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:29:11.818 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:11.818 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:11.818 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 19:29:11.998 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:29:12.008 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:29:12.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28947 150' command took 2 ms to send, 1320 ms to get response, and 1329 ms overall
17-03-17 19:29:12.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:29:12.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8798828125, Z-Position -0.13168778328991. ------
17-03-17 19:29:12.008 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13832 mm
17-03-17 19:29:12.008 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:29:12.008 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:12.008 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:29:12.008 -07 000000012 INF: Y Motor: Moving to 65.7226 mm, started at 64.8799 mm, delta = 0.8427 mm
17-03-17 19:29:12.008 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30215, sync = True, waitForSettling = False)
17-03-17 19:29:12.008 -07 000000569 INF: Z Motor: Moving to -0.138315 mm, started at -0.131688 mm, distance = -6.63 um
17-03-17 19:29:12.008 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:12.018 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:29:12.018 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:12.018 -07 000000593 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:29:12.028 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:29:12.028 -07 000000012 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:12.028 -07 000000012 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:29:12.028 -07 000000012 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:29:12.028 -07 000000569 INF: FPGA: Xmit ZDACW 30215\n [Z Motor]
17-03-17 19:29:12.028 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:29:12.038 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:29:12.038 -07 000000569 INF: FPGA: 'ZDACW 30215' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:29:12.048 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:29:12.058 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:12.058 -07 000000462 INF: FPGA: Recv ZDACR 30215
17-03-17 19:29:12.068 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:29:12.068 -07 000000569 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 19:29:12.198 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:29:12.198 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:29:12.198 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:12.198 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:29:12.198 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:29:12.198 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:12.198 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:12.198 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:29:12.198 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:29:12.218 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:29:12.238 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:29:12.238 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:29:12.418 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 19:29:12.418 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 19:29:12.458 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:12.458 -07 000000623 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:29:12.468 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:29:12.468 -07 000000012 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:12.468 -07 000000012 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:29:12.468 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 19:29:13.418 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:13.418 -07 000000429 INF: FPGA: Recv YRDPOS 134585
17-03-17 19:29:13.428 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:13.428 -07 000000012 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:13.448 -07 000000012 INF: Y Motor: After move to 65.722610, error = -0.007278, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:29:13.448 -07 000000012 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:29:13.448 -07 000000012 INF: Y Motor: Moved to 65.7153 after 1432 ms (table move)
17-03-17 19:29:13.448 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138315 mm (DAC = 30215)
17-03-17 19:29:13.448 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:13.448 -07 000000627 INF: FPGA: Recv ZSGSRD 30830
17-03-17 19:29:13.458 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:29:13.458 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:13.458 -07 000000429 INF: FPGA: Recv ZSGSRD 30818
17-03-17 19:29:13.468 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:13.468 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:13.468 -07 000000462 INF: FPGA: Recv ZSGSRD 30828
17-03-17 19:29:13.478 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:13.478 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:13.478 -07 000000569 INF: FPGA: Recv ZSGSRD 30823
17-03-17 19:29:13.488 -07 000000608 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:13.488 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:13.488 -07 000000593 INF: FPGA: Recv ZSGSRD 30826
17-03-17 19:29:13.498 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:13.498 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:13.498 -07 000000012 INF: FPGA: Recv ZSGSRD 30826
17-03-17 19:29:13.508 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:13.508 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:13.508 -07 000000431 INF: FPGA: Recv ZSGSRD 30827
17-03-17 19:29:13.518 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:13.518 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:13.518 -07 000000623 INF: FPGA: Recv ZSGSRD 30821
17-03-17 19:29:13.528 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:13.528 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:13.528 -07 000000593 INF: FPGA: Recv ZSGSRD 30815
17-03-17 19:29:13.538 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:13.538 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:13.538 -07 000000438 INF: FPGA: Recv ZSGSRD 30820
17-03-17 19:29:13.548 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:13.548 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:13.548 -07 000000551 INF: FPGA: Recv ZPIEZORD 26860
17-03-17 19:29:13.558 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:13.558 -07 000000608 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.611 V. Piezo Error = -8.7 V.
17-03-17 19:29:13.558 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30823 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30824 (-137.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30815 (-137.5 uncal um), Max = 30830 (-137.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:29:13.558 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30823, posNoise = 7, negNoise = 8
17-03-17 19:29:13.558 -07 000000608 INF: Z Motor: After move to -0.138315, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:13.558 -07 000000608 INF: Z Motor: Settle wait time = 1435 ms, measure time = 106 ms (allowed 150 ms), total time = 1541 ms
17-03-17 19:29:13.558 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:29:13.608 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 19:29:13.608 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:29:13.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:13.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:13.608 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:13.608 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:13.608 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:29:13.608 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:13.608 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:29:13.618 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:29:13.618 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:13.618 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:29:13.618 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:29:13.628 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:29:13.628 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:29:13.668 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:29:13.868 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:29:13.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:29:13.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:29:13.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 19:29:13.908 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:29:13.908 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 19:29:13.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:29:13.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 19:29:13.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:13.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:29:13.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 19:29:14.008 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:14.008 -07 000000541 INF: Autofocus start
17-03-17 19:29:14.008 -07 000000541 INF: MeasureProfile start
17-03-17 19:29:14.008 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:14.018 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:29:14.018 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:29:14.028 -07 000000541 INF: MeasureProfile done
17-03-17 19:29:14.028 -07 000000541 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:29:14.028 -07 000000541 INF: Autofocus finished
17-03-17 19:29:14.218 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:29:14.218 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 208 ms overall
17-03-17 19:29:14.228 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71533203125, Z-position -0.138336842856633. ----------
17-03-17 19:29:14.228 -07 000000610 INF: Cycle	26	Tile	8	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:29:14.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28739, sync = True, waitForSettling = True)
17-03-17 19:29:14.228 -07 000000610 INF: Z Motor: Moving to -0.131559 mm, started at -0.138337 mm, distance = 6.78 um
17-03-17 19:29:14.228 -07 000000610 INF: FPGA: Xmit ZDACW 28739\n [Z Motor]
17-03-17 19:29:14.238 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:29:14.238 -07 000000610 INF: FPGA: 'ZDACW 28739' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:29:14.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:14.238 -07 000000608 INF: FPGA: Recv ZDACR 28739
17-03-17 19:29:14.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:29:14.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:29:14.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:14.398 -07 000000541 INF: FPGA: Recv ZSGSRD 29774
17-03-17 19:29:14.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:14.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:14.408 -07 000000475 INF: FPGA: Recv ZSGSRD 29766
17-03-17 19:29:14.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:14.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:14.418 -07 000000623 INF: FPGA: Recv ZSGSRD 29769
17-03-17 19:29:14.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:14.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:14.428 -07 000000438 INF: FPGA: Recv ZSGSRD 29762
17-03-17 19:29:14.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:14.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:14.438 -07 000000569 INF: FPGA: Recv ZSGSRD 29767
17-03-17 19:29:14.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:14.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:14.448 -07 000000462 INF: FPGA: Recv ZSGSRD 29775
17-03-17 19:29:14.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:14.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:14.458 -07 000000627 INF: FPGA: Recv ZSGSRD 29776
17-03-17 19:29:14.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:14.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:14.468 -07 000000012 INF: FPGA: Recv ZSGSRD 29760
17-03-17 19:29:14.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:14.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:14.478 -07 000000569 INF: FPGA: Recv ZSGSRD 29776
17-03-17 19:29:14.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:14.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:14.488 -07 000000429 INF: FPGA: Recv ZSGSRD 29766
17-03-17 19:29:14.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:14.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:14.498 -07 000000593 INF: FPGA: Recv ZPIEZORD 25420
17-03-17 19:29:14.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:14.508 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.385 V. Piezo Error = -9.5 V.
17-03-17 19:29:14.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29769 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29768 (-130.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29760 (-130.7 uncal um), Max = 29776 (-130.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:29:14.508 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29769, posNoise = 7, negNoise = 9
17-03-17 19:29:14.508 -07 000000610 INF: Z Motor: After move to -0.131559, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:14.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 19:29:14.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:14.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:14.508 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:14.508 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:14.508 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:29:14.508 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:14.508 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:29:14.508 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:29:14.508 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:29:14.508 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:29:14.508 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:29:14.508 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:29:14.518 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:29:14.518 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:29:14.518 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:29:14.518 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:29:14.528 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:29:14.528 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 19:29:14.528 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:29:14.528 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:29:14.538 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.974486,
17-03-17 19:29:14.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28916 150\n [Camera]
17-03-17 19:29:14.748 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:29:15.158 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:29:15.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:29:15.158 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:15.158 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:15.158 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:29:15.158 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:29:15.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:29:15.158 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:15.158 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:15.158 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 19:29:15.348 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28916 789
17-03-17 19:29:15.498 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:29:15.528 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:29:15.528 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:29:15.538 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:15.538 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:29:15.538 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:29:15.538 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:15.538 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:15.538 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:15.538 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:29:15.548 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:29:15.688 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:29:15.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:29:15.688 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:15.688 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:15.688 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 19:29:15.698 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:29:15.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:29:15.698 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:15.698 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:15.698 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 19:29:15.878 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:29:15.878 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:29:15.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28916 150' command took 2 ms to send, 1319 ms to get response, and 1350 ms overall
17-03-17 19:29:15.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:29:15.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71533203125, Z-Position -0.131565723259217. ------
17-03-17 19:29:15.888 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:15.888 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13786 mm
17-03-17 19:29:15.888 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:29:15.898 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:15.898 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:29:15.898 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:29:15.898 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:29:15.898 -07 000000541 INF: Y Motor: Moving to 66.5526 mm, started at 65.7153 mm, delta = 0.8373 mm
17-03-17 19:29:15.898 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30115, sync = True, waitForSettling = False)
17-03-17 19:29:15.898 -07 000000012 INF: Z Motor: Moving to -0.137858 mm, started at -0.131566 mm, distance = -6.29 um
17-03-17 19:29:15.908 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:15.908 -07 000000502 INF: FPGA: Recv YRDPOS 134585
17-03-17 19:29:15.918 -07 000000012 INF: FPGA: Xmit ZDACW 30115\n [Z Motor]
17-03-17 19:29:15.918 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:29:15.918 -07 000000541 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:15.918 -07 000000541 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:29:15.918 -07 000000541 INF: Y Motor: Moving 1340 steps-16
17-03-17 19:29:15.918 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:29:15.928 -07 000000012 INF: FPGA: 'ZDACW 30115' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:29:15.928 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:29:15.938 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:15.938 -07 000000502 INF: FPGA: Recv ZDACR 30115
17-03-17 19:29:15.948 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:29:15.948 -07 000000012 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 19:29:16.078 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:29:16.078 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:29:16.078 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:16.078 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:29:16.078 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:29:16.078 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:16.078 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:16.088 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:29:16.088 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:29:16.088 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:29:16.098 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:29:16.098 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:29:16.298 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 19:29:16.298 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:29:16.338 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:16.348 -07 000000438 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:29:16.348 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:29:16.348 -07 000000541 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:16.348 -07 000000541 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:29:16.348 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.163 mm/sec
17-03-17 19:29:16.688 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:29:16.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:29:17.298 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:17.298 -07 000000551 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:29:17.308 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:17.308 -07 000000541 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:17.328 -07 000000541 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:29:17.328 -07 000000541 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:29:17.328 -07 000000541 INF: Y Motor: Moved to 66.5396 after 1431 ms (table move)
17-03-17 19:29:17.328 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137858 mm (DAC = 30115)
17-03-17 19:29:17.328 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:17.338 -07 000000569 INF: FPGA: Recv ZSGSRD 30754
17-03-17 19:29:17.338 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:29:17.338 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:17.338 -07 000000431 INF: FPGA: Recv ZSGSRD 30747
17-03-17 19:29:17.348 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:29:17.348 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:17.348 -07 000000551 INF: FPGA: Recv ZSGSRD 30743
17-03-17 19:29:17.358 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:17.358 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:17.358 -07 000000541 INF: FPGA: Recv ZSGSRD 30754
17-03-17 19:29:17.368 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:17.368 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:17.368 -07 000000608 INF: FPGA: Recv ZSGSRD 30753
17-03-17 19:29:17.378 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:17.378 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:17.378 -07 000000502 INF: FPGA: Recv ZSGSRD 30754
17-03-17 19:29:17.388 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:17.388 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:17.388 -07 000000012 INF: FPGA: Recv ZSGSRD 30740
17-03-17 19:29:17.398 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:17.398 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:17.398 -07 000000475 INF: FPGA: Recv ZSGSRD 30752
17-03-17 19:29:17.408 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:17.408 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:17.408 -07 000000462 INF: FPGA: Recv ZSGSRD 30752
17-03-17 19:29:17.418 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:17.418 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:17.418 -07 000000627 INF: FPGA: Recv ZSGSRD 30749
17-03-17 19:29:17.428 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:17.428 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:17.428 -07 000000551 INF: FPGA: Recv ZPIEZORD 26772
17-03-17 19:29:17.438 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:17.438 -07 000000593 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.595 V. Piezo Error = -8.8 V.
17-03-17 19:29:17.438 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30750 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30752 (-137.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30740 (-137.0 uncal um), Max = 30754 (-137.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:29:17.438 -07 000000593 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30750, posNoise = 4, negNoise = 10
17-03-17 19:29:17.438 -07 000000593 INF: Z Motor: After move to -0.137858, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:17.438 -07 000000593 INF: Z Motor: Settle wait time = 1434 ms, measure time = 104 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:29:17.438 -07 000000593 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:29:17.488 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 19:29:17.488 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:29:17.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:17.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:17.488 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:17.488 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:17.488 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:29:17.488 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:17.488 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:29:17.488 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:29:17.498 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:17.498 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:29:17.498 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:29:17.498 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:29:17.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:29:17.548 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:29:17.748 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:29:17.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:29:17.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:29:17.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 19:29:17.788 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:29:17.788 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 19:29:17.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 19:29:17.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 19:29:17.878 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:17.878 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:29:17.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 19:29:18.088 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:18.088 -07 000000593 INF: Autofocus start
17-03-17 19:29:18.088 -07 000000593 INF: MeasureProfile start
17-03-17 19:29:18.088 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:18.098 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:29:18.098 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:29:18.098 -07 000000593 INF: MeasureProfile done
17-03-17 19:29:18.098 -07 000000593 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 19:29:18.098 -07 000000593 INF: Autofocus finished
17-03-17 19:29:18.298 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:29:18.298 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:29:18.298 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.137867875370284. ----------
17-03-17 19:29:18.298 -07 000000610 INF: Cycle	26	Tile	9	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:29:18.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28593, sync = True, waitForSettling = True)
17-03-17 19:29:18.308 -07 000000610 INF: Z Motor: Moving to -0.130890 mm, started at -0.137868 mm, distance = 6.98 um
17-03-17 19:29:18.308 -07 000000610 INF: FPGA: Xmit ZDACW 28593\n [Z Motor]
17-03-17 19:29:18.308 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:29:18.318 -07 000000610 INF: FPGA: 'ZDACW 28593' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:18.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:18.318 -07 000000541 INF: FPGA: Recv ZDACR 28593
17-03-17 19:29:18.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:18.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:29:18.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:18.478 -07 000000623 INF: FPGA: Recv ZSGSRD 29658
17-03-17 19:29:18.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:18.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:18.488 -07 000000623 INF: FPGA: Recv ZSGSRD 29674
17-03-17 19:29:18.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:18.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:18.498 -07 000000438 INF: FPGA: Recv ZSGSRD 29665
17-03-17 19:29:18.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:18.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:18.508 -07 000000012 INF: FPGA: Recv ZSGSRD 29665
17-03-17 19:29:18.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:18.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:18.518 -07 000000623 INF: FPGA: Recv ZSGSRD 29669
17-03-17 19:29:18.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:18.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:18.528 -07 000000593 INF: FPGA: Recv ZSGSRD 29666
17-03-17 19:29:18.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:18.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:18.538 -07 000000541 INF: FPGA: Recv ZSGSRD 29663
17-03-17 19:29:18.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:18.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:18.548 -07 000000012 INF: FPGA: Recv ZSGSRD 29656
17-03-17 19:29:18.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:18.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:18.558 -07 000000623 INF: FPGA: Recv ZSGSRD 29663
17-03-17 19:29:18.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:18.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:18.568 -07 000000551 INF: FPGA: Recv ZSGSRD 29668
17-03-17 19:29:18.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:18.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:18.578 -07 000000431 INF: FPGA: Recv ZPIEZORD 25313
17-03-17 19:29:18.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:18.588 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -9.6 V.
17-03-17 19:29:18.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29665 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29665 (-130.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29656 (-130.1 uncal um), Max = 29674 (-130.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:29:18.588 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29665, posNoise = 9, negNoise = 9
17-03-17 19:29:18.588 -07 000000610 INF: Z Motor: After move to -0.130890, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:18.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:29:18.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:18.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:18.588 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:18.588 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:29:18.588 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:18.588 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:18.588 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:29:18.588 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:29:18.588 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:29:18.588 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:29:18.588 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:29:18.588 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:29:18.588 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:18.588 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:29:18.588 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:29:18.588 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:29:18.598 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:29:18.598 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:29:18.608 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:29:18.608 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:29:18.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28770 150\n [Camera]
17-03-17 19:29:18.808 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:29:19.208 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:29:19.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:29:19.208 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:19.208 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:19.208 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 19:29:19.208 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:29:19.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:29:19.208 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:19.208 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:19.208 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 19:29:19.398 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28770 787
17-03-17 19:29:19.548 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:29:19.608 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:29:19.608 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:29:19.608 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:19.608 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 19:29:19.608 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:29:19.608 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:19.608 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:19.608 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:29:19.608 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:19.618 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:29:19.738 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:29:19.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:29:19.738 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:19.878 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:29:19.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:29:19.878 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:19.878 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:19.878 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 19:29:19.878 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:19.878 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:29:19.908 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.977204,
17-03-17 19:29:19.938 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:29:19.938 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:29:19.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28770 150' command took 2 ms to send, 1321 ms to get response, and 1329 ms overall
17-03-17 19:29:19.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:29:19.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.130897605196474. ------
17-03-17 19:29:19.938 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13767 mm
17-03-17 19:29:19.938 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:29:19.938 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 30073, sync = True, waitForSettling = False)
17-03-17 19:29:19.938 -07 000000475 INF: Z Motor: Moving to -0.137665 mm, started at -0.130898 mm, distance = -6.77 um
17-03-17 19:29:19.948 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:19.948 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:29:19.948 -07 000000438 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 19:29:19.948 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:19.958 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:29:19.958 -07 000000475 INF: FPGA: Xmit ZDACW 30073\n [Z Motor]
17-03-17 19:29:19.958 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:29:19.968 -07 000000475 INF: FPGA: 'ZDACW 30073' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:29:19.968 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:19.968 -07 000000569 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:29:19.978 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:29:19.978 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:29:19.978 -07 000000438 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:19.978 -07 000000438 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:29:19.978 -07 000000438 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:29:19.998 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:19.998 -07 000000623 INF: FPGA: Recv ZDACR 30073
17-03-17 19:29:20.008 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 19:29:20.008 -07 000000475 INF: Z Motor: MoveAbsStepped took 60 ms (did NOT wait for settling yet))
17-03-17 19:29:20.008 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:29:20.178 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:29:20.178 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:29:20.268 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:29:20.268 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:29:20.268 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:20.278 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:29:20.278 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:29:20.278 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:20.278 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:29:20.278 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:20.278 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 537 ms.
17-03-17 19:29:20.288 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:29:20.388 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 19:29:20.388 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 405 ms overall
17-03-17 19:29:20.418 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:20.418 -07 000000626 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:29:20.428 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:29:20.428 -07 000000438 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:20.428 -07 000000438 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 19:29:20.428 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 406 ms, distance = 0.843 mm, average velocity = 2.076 mm/sec
17-03-17 19:29:21.378 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:21.378 -07 000000475 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:29:21.388 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:21.388 -07 000000438 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:21.408 -07 000000438 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:29:21.408 -07 000000438 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:29:21.408 -07 000000438 INF: Y Motor: Moved to 67.3726 after 1462 ms (table move)
17-03-17 19:29:21.408 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137665 mm (DAC = 30073)
17-03-17 19:29:21.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:21.408 -07 000000541 INF: FPGA: Recv ZSGSRD 30720
17-03-17 19:29:21.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:29:21.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:21.418 -07 000000475 INF: FPGA: Recv ZSGSRD 30719
17-03-17 19:29:21.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:21.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:21.428 -07 000000462 INF: FPGA: Recv ZSGSRD 30718
17-03-17 19:29:21.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:21.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:21.438 -07 000000551 INF: FPGA: Recv ZSGSRD 30717
17-03-17 19:29:21.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:21.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:21.448 -07 000000623 INF: FPGA: Recv ZSGSRD 30724
17-03-17 19:29:21.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:21.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:21.458 -07 000000482 INF: FPGA: Recv ZSGSRD 30721
17-03-17 19:29:21.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:21.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:21.468 -07 000000512 INF: FPGA: Recv ZSGSRD 30725
17-03-17 19:29:21.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:21.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:21.478 -07 000000475 INF: FPGA: Recv ZSGSRD 30726
17-03-17 19:29:21.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:21.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:21.488 -07 000000502 INF: FPGA: Recv ZSGSRD 30720
17-03-17 19:29:21.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:21.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:21.498 -07 000000482 INF: FPGA: Recv ZSGSRD 30722
17-03-17 19:29:21.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:21.508 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:21.508 -07 000000429 INF: FPGA: Recv ZPIEZORD 26740
17-03-17 19:29:21.518 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:21.518 -07 000000431 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.589 V. Piezo Error = -8.8 V.
17-03-17 19:29:21.518 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30721 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30720 (-136.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30717 (-136.9 uncal um), Max = 30726 (-136.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:29:21.518 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30721, posNoise = 5, negNoise = 4
17-03-17 19:29:21.518 -07 000000431 INF: Z Motor: After move to -0.137665, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:21.518 -07 000000431 INF: Z Motor: Settle wait time = 1466 ms, measure time = 104 ms (allowed 150 ms), total time = 1570 ms
17-03-17 19:29:21.518 -07 000000431 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:29:21.568 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-17 19:29:21.568 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:29:21.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:21.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:21.568 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:21.568 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:21.568 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:29:21.568 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:21.578 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:29:21.578 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:29:21.578 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:21.578 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:29:21.588 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:29:21.588 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:29:21.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:29:21.638 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:29:21.688 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:29:21.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:29:21.828 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:29:21.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:29:21.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:29:21.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 19:29:21.868 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:29:21.868 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 19:29:21.878 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:29:21.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:29:21.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:21.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:29:21.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:29:21.978 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:21.978 -07 000000482 INF: Autofocus start
17-03-17 19:29:21.978 -07 000000482 INF: MeasureProfile start
17-03-17 19:29:21.978 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:21.988 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:29:21.988 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:29:21.998 -07 000000482 INF: MeasureProfile done
17-03-17 19:29:21.998 -07 000000482 INF: X=-19  Z correction [um]=-0.09589154
17-03-17 19:29:21.998 -07 000000482 INF: Autofocus finished
17-03-17 19:29:22.188 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:29:22.188 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:29:22.198 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137681573218173. ----------
17-03-17 19:29:22.198 -07 000000610 INF: Cycle	26	Tile	10	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:29:22.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28565, sync = True, waitForSettling = True)
17-03-17 19:29:22.198 -07 000000610 INF: Z Motor: Moving to -0.130762 mm, started at -0.137682 mm, distance = 6.92 um
17-03-17 19:29:22.198 -07 000000610 INF: FPGA: Xmit ZDACW 28565\n [Z Motor]
17-03-17 19:29:22.198 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 19:29:22.208 -07 000000610 INF: FPGA: 'ZDACW 28565' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:29:22.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:22.208 -07 000000482 INF: FPGA: Recv ZDACR 28565
17-03-17 19:29:22.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:29:22.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:29:22.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:22.368 -07 000000593 INF: FPGA: Recv ZSGSRD 29644
17-03-17 19:29:22.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:22.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:22.378 -07 000000608 INF: FPGA: Recv ZSGSRD 29640
17-03-17 19:29:22.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:22.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:22.388 -07 000000502 INF: FPGA: Recv ZSGSRD 29639
17-03-17 19:29:22.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:22.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:22.398 -07 000000475 INF: FPGA: Recv ZSGSRD 29648
17-03-17 19:29:22.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:22.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:22.408 -07 000000541 INF: FPGA: Recv ZSGSRD 29644
17-03-17 19:29:22.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:22.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:22.418 -07 000000482 INF: FPGA: Recv ZSGSRD 29648
17-03-17 19:29:22.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:22.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:22.428 -07 000000623 INF: FPGA: Recv ZSGSRD 29649
17-03-17 19:29:22.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:22.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:22.438 -07 000000626 INF: FPGA: Recv ZSGSRD 29645
17-03-17 19:29:22.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:22.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:22.448 -07 000000462 INF: FPGA: Recv ZSGSRD 29646
17-03-17 19:29:22.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:22.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:22.458 -07 000000608 INF: FPGA: Recv ZSGSRD 29638
17-03-17 19:29:22.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:22.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:22.468 -07 000000593 INF: FPGA: Recv ZPIEZORD 25342
17-03-17 19:29:22.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:22.478 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.359 V. Piezo Error = -9.5 V.
17-03-17 19:29:22.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29644 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29644 (-130.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29638 (-129.9 uncal um), Max = 29649 (-130.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:29:22.478 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29644, posNoise = 5, negNoise = 6
17-03-17 19:29:22.478 -07 000000610 INF: Z Motor: After move to -0.130762, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:22.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:29:22.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:22.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:22.478 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:22.478 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:22.478 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:29:22.478 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:29:22.478 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:29:22.478 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:22.478 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:29:22.478 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:29:22.488 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:29:22.488 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:29:22.488 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:29:22.488 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:29:22.488 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:22.488 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:29:22.498 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:29:22.498 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:29:22.498 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:29:22.498 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:29:22.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28742 150\n [Camera]
17-03-17 19:29:22.698 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:29:23.098 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:29:23.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:29:23.108 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:23.108 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:29:23.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:29:23.108 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:23.108 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:23.108 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-17 19:29:23.118 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:23.118 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:29:23.298 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28742 787
17-03-17 19:29:23.448 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:29:23.488 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:29:23.488 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:29:23.488 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:23.488 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:29:23.488 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:29:23.488 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:23.488 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:23.488 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:29:23.488 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:23.498 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:29:23.638 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:29:23.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:29:23.758 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:29:23.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:29:23.758 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:23.758 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:23.768 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:23.768 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) start.
17-03-17 19:29:23.768 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:23.768 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:29:23.828 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:29:23.828 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:29:23.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28742 150' command took 2 ms to send, 1317 ms to get response, and 1330 ms overall
17-03-17 19:29:23.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:29:23.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.130762696741497. ------
17-03-17 19:29:23.848 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:23.848 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13715 mm
17-03-17 19:29:23.848 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:29:23.848 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:23.848 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:29:23.848 -07 000000431 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 19:29:23.848 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29961, sync = True, waitForSettling = False)
17-03-17 19:29:23.848 -07 000000608 INF: Z Motor: Moving to -0.137153 mm, started at -0.130763 mm, distance = -6.39 um
17-03-17 19:29:23.858 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:23.858 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:23.858 -07 000000626 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:29:23.868 -07 000000608 INF: FPGA: Xmit ZDACW 29961\n [Z Motor]
17-03-17 19:29:23.868 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:29:23.868 -07 000000431 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:23.868 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:29:23.878 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:29:23.878 -07 000000608 INF: FPGA: 'ZDACW 29961' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:29:23.878 -07 000000431 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:29:23.878 -07 000000431 INF: Y Motor: Moving 1343 steps-21
17-03-17 19:29:23.888 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:23.888 -07 000000593 INF: FPGA: Recv ZDACR 29961
17-03-17 19:29:23.898 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:29:23.898 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:29:23.898 -07 000000608 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 19:29:24.078 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:29:24.078 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:29:24.138 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:29:24.138 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:29:24.138 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:24.138 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:24.138 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 19:29:24.148 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:29:24.148 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:24.148 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:24.148 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:29:24.148 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:29:24.268 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:29:24.268 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 19:29:24.308 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:24.308 -07 000000608 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:29:24.318 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:29:24.318 -07 000000431 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:24.318 -07 000000431 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:29:24.318 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.127 mm/sec
17-03-17 19:29:25.268 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:25.268 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 3.966297,
17-03-17 19:29:25.268 -07 000000502 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:29:25.278 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:25.278 -07 000000431 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:25.298 -07 000000431 INF: Y Motor: After move to 68.212608, error = -0.006554, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:29:25.298 -07 000000431 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:29:25.298 -07 000000431 INF: Y Motor: Moved to 68.2061 after 1445 ms (table move)
17-03-17 19:29:25.298 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137153 mm (DAC = 29961)
17-03-17 19:29:25.318 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:25.318 -07 000000478 INF: FPGA: Recv ZSGSRD 30646
17-03-17 19:29:25.328 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:29:25.328 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:25.328 -07 000000512 INF: FPGA: Recv ZSGSRD 30646
17-03-17 19:29:25.338 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:25.338 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:25.338 -07 000000551 INF: FPGA: Recv ZSGSRD 30639
17-03-17 19:29:25.348 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:25.358 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:25.358 -07 000000482 INF: FPGA: Recv ZSGSRD 30641
17-03-17 19:29:25.368 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:29:25.368 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:25.368 -07 000000569 INF: FPGA: Recv ZSGSRD 30639
17-03-17 19:29:25.378 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:25.378 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:25.378 -07 000000431 INF: FPGA: Recv ZSGSRD 30643
17-03-17 19:29:25.388 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:25.388 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:25.388 -07 000000626 INF: FPGA: Recv ZSGSRD 30637
17-03-17 19:29:25.398 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:25.398 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:25.398 -07 000000569 INF: FPGA: Recv ZSGSRD 30640
17-03-17 19:29:25.408 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:25.408 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:25.408 -07 000000512 INF: FPGA: Recv ZSGSRD 30642
17-03-17 19:29:25.418 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:25.418 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:25.418 -07 000000541 INF: FPGA: Recv ZSGSRD 30640
17-03-17 19:29:25.428 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:25.428 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:25.428 -07 000000431 INF: FPGA: Recv ZPIEZORD 26668
17-03-17 19:29:25.438 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:25.438 -07 000000623 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.572 V. Piezo Error = -8.7 V.
17-03-17 19:29:25.438 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30641 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30640 (-136.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30637 (-136.3 uncal um), Max = 30646 (-136.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:29:25.438 -07 000000623 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30641, posNoise = 5, negNoise = 4
17-03-17 19:29:25.438 -07 000000623 INF: Z Motor: After move to -0.137153, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:25.438 -07 000000623 INF: Z Motor: Settle wait time = 1449 ms, measure time = 134 ms (allowed 150 ms), total time = 1583 ms
17-03-17 19:29:25.438 -07 000000623 INF: Z Motor: Waiting extra 16 ms after reading position to reach expected total of 150 ms
17-03-17 19:29:25.458 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 19:29:25.458 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:29:25.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:25.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:25.458 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:29:25.458 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:25.458 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:25.458 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:25.458 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:29:25.458 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:29:25.468 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:25.468 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:29:25.468 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:29:25.468 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:29:25.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:29:25.518 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:29:25.718 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:29:25.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:29:25.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:29:25.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 19:29:25.758 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:29:25.758 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 19:29:25.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 19:29:25.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:29:25.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:25.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:29:25.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:29:25.858 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:25.858 -07 000000502 INF: Autofocus start
17-03-17 19:29:25.858 -07 000000502 INF: MeasureProfile start
17-03-17 19:29:25.858 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:25.868 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:29:25.868 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:29:25.868 -07 000000502 INF: MeasureProfile done
17-03-17 19:29:25.868 -07 000000502 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:29:25.868 -07 000000502 INF: Autofocus finished
17-03-17 19:29:26.068 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:29:26.068 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 204 ms overall
17-03-17 19:29:26.068 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2060546875, Z-position -0.137167636246832. ----------
17-03-17 19:29:26.078 -07 000000610 INF: Cycle	26	Tile	11	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:29:26.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28485, sync = True, waitForSettling = True)
17-03-17 19:29:26.078 -07 000000610 INF: Z Motor: Moving to -0.130396 mm, started at -0.137168 mm, distance = 6.77 um
17-03-17 19:29:26.078 -07 000000610 INF: FPGA: Xmit ZDACW 28485\n [Z Motor]
17-03-17 19:29:26.078 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:29:26.088 -07 000000610 INF: FPGA: 'ZDACW 28485' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:29:26.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:26.088 -07 000000551 INF: FPGA: Recv ZDACR 28485
17-03-17 19:29:26.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:26.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:29:26.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:26.248 -07 000000569 INF: FPGA: Recv ZSGSRD 29591
17-03-17 19:29:26.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:26.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:26.258 -07 000000462 INF: FPGA: Recv ZSGSRD 29592
17-03-17 19:29:26.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:26.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:26.268 -07 000000623 INF: FPGA: Recv ZSGSRD 29588
17-03-17 19:29:26.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:26.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:26.278 -07 000000482 INF: FPGA: Recv ZSGSRD 29581
17-03-17 19:29:26.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:26.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:26.288 -07 000000512 INF: FPGA: Recv ZSGSRD 29584
17-03-17 19:29:26.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:26.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:26.298 -07 000000569 INF: FPGA: Recv ZSGSRD 29587
17-03-17 19:29:26.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:26.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:26.308 -07 000000462 INF: FPGA: Recv ZSGSRD 29584
17-03-17 19:29:26.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:26.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:26.318 -07 000000608 INF: FPGA: Recv ZSGSRD 29584
17-03-17 19:29:26.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:26.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:26.328 -07 000000429 INF: FPGA: Recv ZSGSRD 29589
17-03-17 19:29:26.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:26.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:26.338 -07 000000627 INF: FPGA: Recv ZSGSRD 29583
17-03-17 19:29:26.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:26.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:26.348 -07 000000569 INF: FPGA: Recv ZPIEZORD 25266
17-03-17 19:29:26.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:26.358 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -9.5 V.
17-03-17 19:29:26.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29586 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29586 (-129.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29581 (-129.6 uncal um), Max = 29592 (-129.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:29:26.358 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29586, posNoise = 6, negNoise = 5
17-03-17 19:29:26.358 -07 000000610 INF: Z Motor: After move to -0.130396, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:26.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:29:26.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:26.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:26.358 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:26.358 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:26.358 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:29:26.358 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:29:26.358 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:29:26.358 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:26.358 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:29:26.358 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:29:26.358 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:29:26.358 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:29:26.368 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:29:26.368 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:29:26.368 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:29:26.368 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:29:26.378 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:29:26.378 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:29:26.378 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:29:26.378 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:29:26.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28662 150\n [Camera]
17-03-17 19:29:26.578 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:29:26.688 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:29:26.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:29:26.978 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:29:26.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:29:26.978 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:26.978 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:26.978 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:29:26.978 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:29:26.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:29:26.978 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:26.978 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:26.978 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:29:27.168 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28662 787
17-03-17 19:29:27.318 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:29:27.358 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:29:27.358 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:29:27.358 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:29:27.358 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:27.358 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:29:27.358 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:27.358 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:27.368 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:29:27.368 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:29:27.368 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:29:27.518 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:29:27.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:29:27.518 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:27.628 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:29:27.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:29:27.628 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:27.638 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:27.638 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:27.638 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:29:27.638 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:29:27.708 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:29:27.708 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:29:27.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28662 150' command took 2 ms to send, 1323 ms to get response, and 1330 ms overall
17-03-17 19:29:27.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:29:27.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2060546875, Z-Position -0.130390092437275. ------
17-03-17 19:29:27.708 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:27.708 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13705 mm
17-03-17 19:29:27.708 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:29:27.718 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:27.718 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:29:27.718 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:29:27.718 -07 000000627 INF: Y Motor: Moving to 69.0426 mm, started at 68.2061 mm, delta = 0.8366 mm
17-03-17 19:29:27.718 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:29:27.718 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29939, sync = True, waitForSettling = False)
17-03-17 19:29:27.718 -07 000000475 INF: Z Motor: Moving to -0.137052 mm, started at -0.130390 mm, distance = -6.66 um
17-03-17 19:29:27.728 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:27.728 -07 000000478 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:29:27.738 -07 000000475 INF: FPGA: Xmit ZDACW 29939\n [Z Motor]
17-03-17 19:29:27.738 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:29:27.738 -07 000000627 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:27.738 -07 000000627 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:29:27.738 -07 000000627 INF: Y Motor: Moving 1338 steps-14
17-03-17 19:29:27.738 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:29:27.748 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:29:27.748 -07 000000475 INF: FPGA: 'ZDACW 29939' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:29:27.758 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:27.758 -07 000000482 INF: FPGA: Recv ZDACR 29939
17-03-17 19:29:27.768 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:29:27.768 -07 000000475 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 19:29:27.918 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:29:27.918 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:29:28.008 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:29:28.008 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:29:28.008 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:28.008 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:29:28.008 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:29:28.008 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:28.018 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:29:28.018 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:28.018 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 501 ms.
17-03-17 19:29:28.028 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:29:28.128 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:29:28.128 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 390 ms overall
17-03-17 19:29:28.158 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:28.168 -07 000000626 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:29:28.168 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:29:28.168 -07 000000627 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:28.168 -07 000000627 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:29:28.168 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.837 mm, average velocity = 2.145 mm/sec
17-03-17 19:29:29.118 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:29.118 -07 000000569 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:29:29.128 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:29.128 -07 000000627 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:29.148 -07 000000627 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:29:29.148 -07 000000627 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:29:29.148 -07 000000627 INF: Y Motor: Moved to 69.0278 after 1430 ms (table move)
17-03-17 19:29:29.148 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137052 mm (DAC = 29939)
17-03-17 19:29:29.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:29.158 -07 000000438 INF: FPGA: Recv ZSGSRD 30625
17-03-17 19:29:29.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:29:29.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:29.158 -07 000000429 INF: FPGA: Recv ZSGSRD 30626
17-03-17 19:29:29.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:29:29.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:29.168 -07 000000512 INF: FPGA: Recv ZSGSRD 30625
17-03-17 19:29:29.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:29.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:29.178 -07 000000608 INF: FPGA: Recv ZSGSRD 30622
17-03-17 19:29:29.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:29.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:29.188 -07 000000438 INF: FPGA: Recv ZSGSRD 30620
17-03-17 19:29:29.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:29.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:29.198 -07 000000462 INF: FPGA: Recv ZSGSRD 30620
17-03-17 19:29:29.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:29.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:29.208 -07 000000482 INF: FPGA: Recv ZSGSRD 30628
17-03-17 19:29:29.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:29.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:29.218 -07 000000608 INF: FPGA: Recv ZSGSRD 30626
17-03-17 19:29:29.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:29.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:29.228 -07 000000478 INF: FPGA: Recv ZSGSRD 30629
17-03-17 19:29:29.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:29.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:29.238 -07 000000462 INF: FPGA: Recv ZSGSRD 30629
17-03-17 19:29:29.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:29.298 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:29.298 -07 000000569 INF: FPGA: Recv ZPIEZORD 26630
17-03-17 19:29:29.308 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:29:29.308 -07 000000431 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.568 V. Piezo Error = -8.8 V.
17-03-17 19:29:29.308 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30625 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30626 (-136.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30620 (-136.2 uncal um), Max = 30629 (-136.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:29:29.308 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30625, posNoise = 4, negNoise = 5
17-03-17 19:29:29.308 -07 000000431 INF: Z Motor: After move to -0.137052, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:29.308 -07 000000431 INF: Z Motor: Settle wait time = 1435 ms, measure time = 153 ms (allowed 150 ms), total time = 1588 ms
17-03-17 19:29:29.308 -07 000000431 INF: Z Motor: Warning: Actual position measuring time = 153 ms, longer than max expected time of 150 ms
17-03-17 19:29:29.308 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 19:29:29.308 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:29:29.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:29.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:29.308 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:29.308 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:29.308 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:29:29.308 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:29.318 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:29:29.318 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:29:29.318 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:29.318 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:29:29.318 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:29:29.318 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:29:29.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:29:29.368 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:29:29.568 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:29:29.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:29:29.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:29:29.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:29:29.608 -07 000000462 INF: FPGA: Recv @CAMSNAP 283
17-03-17 19:29:29.608 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 19:29:29.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 287 ms overall
17-03-17 19:29:29.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 19:29:29.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:29.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:29:29.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 19:29:29.818 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:29.818 -07 000000438 INF: Autofocus start
17-03-17 19:29:29.818 -07 000000438 INF: MeasureProfile start
17-03-17 19:29:29.818 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:29.828 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:29:29.828 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:29:29.828 -07 000000438 INF: MeasureProfile done
17-03-17 19:29:29.828 -07 000000438 INF: X=-8  Z correction [um]=-0.04234553
17-03-17 19:29:29.828 -07 000000438 INF: Autofocus finished
17-03-17 19:29:30.028 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:29:30.028 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:29:30.038 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.137064848852564. ----------
17-03-17 19:29:30.038 -07 000000610 INF: Cycle	26	Tile	12	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:29:30.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28443, sync = True, waitForSettling = True)
17-03-17 19:29:30.038 -07 000000610 INF: Z Motor: Moving to -0.130204 mm, started at -0.137065 mm, distance = 6.86 um
17-03-17 19:29:30.038 -07 000000610 INF: FPGA: Xmit ZDACW 28443\n [Z Motor]
17-03-17 19:29:30.038 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:29:30.048 -07 000000610 INF: FPGA: 'ZDACW 28443' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:29:30.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:30.048 -07 000000623 INF: FPGA: Recv ZDACR 28443
17-03-17 19:29:30.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:30.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:29:30.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:30.208 -07 000000502 INF: FPGA: Recv ZSGSRD 29559
17-03-17 19:29:30.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:30.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:30.218 -07 000000541 INF: FPGA: Recv ZSGSRD 29560
17-03-17 19:29:30.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:30.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:30.228 -07 000000478 INF: FPGA: Recv ZSGSRD 29558
17-03-17 19:29:30.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:30.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:30.238 -07 000000626 INF: FPGA: Recv ZSGSRD 29558
17-03-17 19:29:30.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:30.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:30.248 -07 000000475 INF: FPGA: Recv ZSGSRD 29565
17-03-17 19:29:30.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:30.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:30.258 -07 000000482 INF: FPGA: Recv ZSGSRD 29557
17-03-17 19:29:30.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:30.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:30.268 -07 000000627 INF: FPGA: Recv ZSGSRD 29559
17-03-17 19:29:30.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:30.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:30.278 -07 000000512 INF: FPGA: Recv ZSGSRD 29563
17-03-17 19:29:30.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:30.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:30.288 -07 000000502 INF: FPGA: Recv ZSGSRD 29558
17-03-17 19:29:30.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:30.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:30.298 -07 000000593 INF: FPGA: Recv ZSGSRD 29557
17-03-17 19:29:30.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:30.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:30.308 -07 000000012 INF: FPGA: Recv ZPIEZORD 25223
17-03-17 19:29:30.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:30.318 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.340 V. Piezo Error = -9.5 V.
17-03-17 19:29:30.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29559 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29558 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29557 (-129.4 uncal um), Max = 29565 (-129.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 19:29:30.318 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29559, posNoise = 6, negNoise = 2
17-03-17 19:29:30.318 -07 000000610 INF: Z Motor: After move to -0.130204, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:30.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:29:30.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:30.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:30.318 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:30.318 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:29:30.318 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:29:30.318 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:29:30.318 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:30.318 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:30.318 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:29:30.318 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:29:30.318 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:29:30.318 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:29:30.328 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:29:30.328 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:29:30.328 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:30.328 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:29:30.338 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:29:30.338 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:29:30.338 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:29:30.338 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:29:30.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28619 150\n [Camera]
17-03-17 19:29:30.538 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:29:30.638 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.004458,
17-03-17 19:29:30.938 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:29:30.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:29:30.938 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:29:30.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:29:30.948 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:30.948 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:30.948 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:30.948 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:29:30.948 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:30.948 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:29:31.128 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28619 787
17-03-17 19:29:31.278 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:29:31.318 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:29:31.318 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:29:31.318 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:31.328 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:29:31.328 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:29:31.328 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:31.328 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:31.328 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:31.328 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:29:31.328 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:29:31.478 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:29:31.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:29:31.478 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:31.588 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:29:31.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:29:31.588 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:31.598 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:31.598 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:29:31.598 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:31.598 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:29:31.668 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:29:31.668 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:29:31.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28619 150' command took 2 ms to send, 1324 ms to get response, and 1329 ms overall
17-03-17 19:29:31.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:29:31.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.130216638709447. ------
17-03-17 19:29:31.668 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:31.668 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13661 mm
17-03-17 19:29:31.668 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:29:31.678 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:29:31.678 -07 000000482 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 19:29:31.678 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:31.678 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:31.678 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:29:31.678 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29842, sync = True, waitForSettling = False)
17-03-17 19:29:31.678 -07 000000012 INF: Z Motor: Moving to -0.136608 mm, started at -0.130217 mm, distance = -6.39 um
17-03-17 19:29:31.678 -07 000000627 INF: FPGA: Recv YRDPOS 141370
17-03-17 19:29:31.688 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:29:31.688 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:29:31.688 -07 000000482 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:31.688 -07 000000482 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:29:31.688 -07 000000482 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:29:31.688 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:29:31.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:29:31.698 -07 000000012 INF: FPGA: Xmit ZDACW 29842\n [Z Motor]
17-03-17 19:29:31.698 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:29:31.708 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:29:31.708 -07 000000012 INF: FPGA: 'ZDACW 29842' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:29:31.718 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:31.718 -07 000000512 INF: FPGA: Recv ZDACR 29842
17-03-17 19:29:31.728 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:29:31.728 -07 000000012 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 19:29:31.888 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:29:31.888 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 19:29:31.988 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:29:31.988 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:29:31.988 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:31.988 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 19:29:31.988 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:29:31.988 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:31.988 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:31.988 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:31.988 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 19:29:31.998 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:29:32.078 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 19:29:32.078 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 19:29:32.118 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:32.118 -07 000000512 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:29:32.128 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:29:32.128 -07 000000482 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:32.128 -07 000000482 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:29:32.128 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.845 mm, average velocity = 2.166 mm/sec
17-03-17 19:29:33.078 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:33.078 -07 000000502 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:29:33.088 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:33.088 -07 000000482 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:33.108 -07 000000482 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:29:33.108 -07 000000482 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:29:33.108 -07 000000482 INF: Y Motor: Moved to 69.8643 after 1430 ms (table move)
17-03-17 19:29:33.108 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136608 mm (DAC = 29842)
17-03-17 19:29:33.108 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:33.118 -07 000000623 INF: FPGA: Recv ZSGSRD 30555
17-03-17 19:29:33.118 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:29:33.118 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:33.118 -07 000000502 INF: FPGA: Recv ZSGSRD 30550
17-03-17 19:29:33.128 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:33.128 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:33.128 -07 000000475 INF: FPGA: Recv ZSGSRD 30554
17-03-17 19:29:33.138 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:33.138 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:33.138 -07 000000012 INF: FPGA: Recv ZSGSRD 30561
17-03-17 19:29:33.148 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:33.148 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:33.148 -07 000000569 INF: FPGA: Recv ZSGSRD 30561
17-03-17 19:29:33.158 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:33.158 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:33.158 -07 000000431 INF: FPGA: Recv ZSGSRD 30560
17-03-17 19:29:33.168 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:33.168 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:33.168 -07 000000429 INF: FPGA: Recv ZSGSRD 30549
17-03-17 19:29:33.178 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:33.178 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:33.178 -07 000000012 INF: FPGA: Recv ZSGSRD 30547
17-03-17 19:29:33.188 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:33.188 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:33.188 -07 000000541 INF: FPGA: Recv ZSGSRD 30549
17-03-17 19:29:33.198 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:33.198 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:33.198 -07 000000627 INF: FPGA: Recv ZSGSRD 30554
17-03-17 19:29:33.208 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:33.208 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:33.208 -07 000000438 INF: FPGA: Recv ZPIEZORD 26548
17-03-17 19:29:33.218 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:33.218 -07 000000478 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.554 V. Piezo Error = -8.8 V.
17-03-17 19:29:33.218 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30554 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30554 (-135.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30547 (-135.8 uncal um), Max = 30561 (-135.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:29:33.218 -07 000000478 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30554, posNoise = 7, negNoise = 7
17-03-17 19:29:33.218 -07 000000478 INF: Z Motor: After move to -0.136608, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:33.218 -07 000000478 INF: Z Motor: Settle wait time = 1433 ms, measure time = 104 ms (allowed 150 ms), total time = 1537 ms
17-03-17 19:29:33.218 -07 000000478 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:29:33.268 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 19:29:33.268 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:29:33.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:33.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:33.268 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:33.268 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:33.268 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:29:33.268 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:33.278 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:29:33.278 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:29:33.278 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:29:33.278 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:29:33.288 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:29:33.288 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:29:33.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:29:33.328 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:29:33.528 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:29:33.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:29:33.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:29:33.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:29:33.568 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:29:33.568 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 19:29:33.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 19:29:33.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 19:29:33.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:33.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:29:33.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 19:29:33.768 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:33.768 -07 000000627 INF: Autofocus start
17-03-17 19:29:33.768 -07 000000627 INF: MeasureProfile start
17-03-17 19:29:33.768 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:33.778 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:29:33.778 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:29:33.778 -07 000000627 INF: MeasureProfile done
17-03-17 19:29:33.778 -07 000000627 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:29:33.778 -07 000000627 INF: Autofocus finished
17-03-17 19:29:33.978 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:29:33.978 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:29:33.988 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.136608729790499. ----------
17-03-17 19:29:33.988 -07 000000610 INF: Cycle	26	Tile	13	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:29:33.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28350, sync = True, waitForSettling = True)
17-03-17 19:29:33.988 -07 000000610 INF: Z Motor: Moving to -0.129778 mm, started at -0.136609 mm, distance = 6.83 um
17-03-17 19:29:33.988 -07 000000610 INF: FPGA: Xmit ZDACW 28350\n [Z Motor]
17-03-17 19:29:33.988 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:29:33.998 -07 000000610 INF: FPGA: 'ZDACW 28350' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:29:33.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:33.998 -07 000000431 INF: FPGA: Recv ZDACR 28350
17-03-17 19:29:34.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:34.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:29:34.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:34.158 -07 000000482 INF: FPGA: Recv ZSGSRD 29493
17-03-17 19:29:34.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:34.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:34.168 -07 000000541 INF: FPGA: Recv ZSGSRD 29494
17-03-17 19:29:34.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:34.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:34.178 -07 000000478 INF: FPGA: Recv ZSGSRD 29490
17-03-17 19:29:34.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:34.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:34.188 -07 000000502 INF: FPGA: Recv ZSGSRD 29490
17-03-17 19:29:34.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:34.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:34.198 -07 000000462 INF: FPGA: Recv ZSGSRD 29492
17-03-17 19:29:34.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:34.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:34.208 -07 000000438 INF: FPGA: Recv ZSGSRD 29498
17-03-17 19:29:34.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:34.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:34.218 -07 000000541 INF: FPGA: Recv ZSGSRD 29481
17-03-17 19:29:34.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:34.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:34.228 -07 000000478 INF: FPGA: Recv ZSGSRD 29490
17-03-17 19:29:34.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:34.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:34.238 -07 000000593 INF: FPGA: Recv ZSGSRD 29496
17-03-17 19:29:34.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:34.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:34.248 -07 000000626 INF: FPGA: Recv ZSGSRD 29493
17-03-17 19:29:34.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:34.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:34.258 -07 000000608 INF: FPGA: Recv ZPIEZORD 25141
17-03-17 19:29:34.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:34.268 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.326 V. Piezo Error = -9.6 V.
17-03-17 19:29:34.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29492 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29492 (-129.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29481 (-128.9 uncal um), Max = 29498 (-129.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 19:29:34.268 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29492, posNoise = 6, negNoise = 11
17-03-17 19:29:34.268 -07 000000610 INF: Z Motor: After move to -0.129778, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:34.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:29:34.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:34.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:34.268 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:34.268 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:29:34.268 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:34.268 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:29:34.268 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:29:34.268 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:34.268 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:29:34.268 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:29:34.268 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:29:34.268 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:29:34.278 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:34.278 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:29:34.278 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:29:34.278 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:29:34.288 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:29:34.288 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:29:34.288 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:29:34.288 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:29:34.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28526 150\n [Camera]
17-03-17 19:29:34.488 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:29:34.888 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:29:34.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:29:34.888 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:34.888 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:34.888 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:29:34.888 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:29:34.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:29:34.898 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:34.898 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:34.898 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:29:35.078 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28526 787
17-03-17 19:29:35.228 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:29:35.268 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:29:35.268 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:29:35.268 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:35.278 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:35.278 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:29:35.278 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 19:29:35.278 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:29:35.278 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:35.288 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:35.288 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:29:35.428 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:29:35.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:29:35.428 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:35.548 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:29:35.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:29:35.548 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:35.558 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:35.558 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:29:35.558 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:35.558 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:29:35.618 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:29:35.618 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:29:35.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28526 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-17 19:29:35.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:29:35.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8642578125, Z-Position -0.129786216495949. ------
17-03-17 19:29:35.618 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:35.618 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13618 mm
17-03-17 19:29:35.618 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:29:35.628 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:29:35.628 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29748, sync = True, waitForSettling = False)
17-03-17 19:29:35.628 -07 000000012 INF: Z Motor: Moving to -0.136178 mm, started at -0.129786 mm, distance = -6.39 um
17-03-17 19:29:35.628 -07 000000012 INF: FPGA: Xmit ZDACW 29748\n [Z Motor]
17-03-17 19:29:35.628 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:35.628 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:29:35.628 -07 000000502 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 19:29:35.628 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:29:35.638 -07 000000012 INF: FPGA: 'ZDACW 29748' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:29:35.638 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:29:35.648 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:35.648 -07 000000593 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:29:35.658 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:35.658 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:29:35.658 -07 000000502 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:35.658 -07 000000502 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:29:35.658 -07 000000502 INF: Y Motor: Moving 1341 steps-18
17-03-17 19:29:35.658 -07 000000627 INF: FPGA: Recv ZDACR 29748
17-03-17 19:29:35.668 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:29:35.668 -07 000000012 INF: FPGA: 'ZDACR' command took 8 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:29:35.668 -07 000000012 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 19:29:35.838 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:29:35.838 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 19:29:35.938 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:29:35.938 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:29:35.938 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:35.938 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:29:35.938 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:29:35.938 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:35.938 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:35.938 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:35.938 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-17 19:29:35.948 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:29:35.998 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.008536,
17-03-17 19:29:36.038 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:29:36.038 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-17 19:29:36.078 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:36.078 -07 000000512 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:29:36.088 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:29:36.088 -07 000000502 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:36.088 -07 000000502 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:29:36.088 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.838 mm, average velocity = 2.206 mm/sec
17-03-17 19:29:36.688 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:29:36.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:29:37.038 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:37.038 -07 000000593 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:29:37.048 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:37.048 -07 000000502 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:37.068 -07 000000502 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:29:37.068 -07 000000502 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:29:37.068 -07 000000502 INF: Y Motor: Moved to 70.6895 after 1441 ms (table move)
17-03-17 19:29:37.068 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136178 mm (DAC = 29748)
17-03-17 19:29:37.068 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:37.068 -07 000000551 INF: FPGA: Recv ZSGSRD 30492
17-03-17 19:29:37.078 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:29:37.078 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:37.078 -07 000000431 INF: FPGA: Recv ZSGSRD 30491
17-03-17 19:29:37.088 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:37.088 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:37.088 -07 000000429 INF: FPGA: Recv ZSGSRD 30489
17-03-17 19:29:37.098 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:37.098 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:37.098 -07 000000475 INF: FPGA: Recv ZSGSRD 30486
17-03-17 19:29:37.108 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:37.108 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:37.108 -07 000000551 INF: FPGA: Recv ZSGSRD 30491
17-03-17 19:29:37.118 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:37.118 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:37.118 -07 000000502 INF: FPGA: Recv ZSGSRD 30491
17-03-17 19:29:37.128 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:37.128 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:37.128 -07 000000541 INF: FPGA: Recv ZSGSRD 30488
17-03-17 19:29:37.138 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:37.138 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:37.138 -07 000000462 INF: FPGA: Recv ZSGSRD 30474
17-03-17 19:29:37.148 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:37.148 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:37.148 -07 000000627 INF: FPGA: Recv ZSGSRD 30481
17-03-17 19:29:37.158 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:37.158 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:37.158 -07 000000502 INF: FPGA: Recv ZSGSRD 30483
17-03-17 19:29:37.168 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:37.168 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:37.168 -07 000000541 INF: FPGA: Recv ZPIEZORD 26496
17-03-17 19:29:37.178 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:37.178 -07 000000438 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.539 V. Piezo Error = -8.8 V.
17-03-17 19:29:37.178 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30487 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30488 (-135.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30474 (-135.3 uncal um), Max = 30492 (-135.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 19:29:37.178 -07 000000438 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30487, posNoise = 5, negNoise = 13
17-03-17 19:29:37.178 -07 000000438 INF: Z Motor: After move to -0.136178, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:37.178 -07 000000438 INF: Z Motor: Settle wait time = 1444 ms, measure time = 105 ms (allowed 150 ms), total time = 1549 ms
17-03-17 19:29:37.178 -07 000000438 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:29:37.228 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 19:29:37.228 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:29:37.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:37.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:37.228 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:37.228 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:37.228 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:29:37.228 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:37.228 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:29:37.228 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:29:37.238 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:37.238 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:29:37.248 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 19:29:37.318 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 88 ms.
17-03-17 19:29:37.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:29:37.368 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:29:37.568 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:29:37.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:29:37.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:29:37.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:29:37.608 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:29:37.608 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:29:37.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 19:29:37.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 19:29:37.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:37.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:29:37.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 19:29:37.708 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:37.708 -07 000000512 INF: Autofocus start
17-03-17 19:29:37.708 -07 000000512 INF: MeasureProfile start
17-03-17 19:29:37.708 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:37.718 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:29:37.718 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:29:37.718 -07 000000512 INF: MeasureProfile done
17-03-17 19:29:37.718 -07 000000512 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:29:37.718 -07 000000512 INF: Autofocus finished
17-03-17 19:29:37.918 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:29:37.918 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 19:29:37.918 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.136178307577001. ----------
17-03-17 19:29:37.918 -07 000000610 INF: Cycle	26	Tile	14	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:29:37.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28272, sync = True, waitForSettling = True)
17-03-17 19:29:37.928 -07 000000610 INF: Z Motor: Moving to -0.129421 mm, started at -0.136178 mm, distance = 6.76 um
17-03-17 19:29:37.928 -07 000000610 INF: FPGA: Xmit ZDACW 28272\n [Z Motor]
17-03-17 19:29:37.928 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:29:37.938 -07 000000610 INF: FPGA: 'ZDACW 28272' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:37.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:37.938 -07 000000502 INF: FPGA: Recv ZDACR 28272
17-03-17 19:29:37.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:37.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:29:38.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:38.098 -07 000000626 INF: FPGA: Recv ZSGSRD 29434
17-03-17 19:29:38.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:38.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:38.108 -07 000000608 INF: FPGA: Recv ZSGSRD 29434
17-03-17 19:29:38.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:38.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:38.118 -07 000000623 INF: FPGA: Recv ZSGSRD 29438
17-03-17 19:29:38.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:38.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:38.128 -07 000000541 INF: FPGA: Recv ZSGSRD 29439
17-03-17 19:29:38.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:38.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:38.138 -07 000000431 INF: FPGA: Recv ZSGSRD 29436
17-03-17 19:29:38.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:38.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:38.148 -07 000000626 INF: FPGA: Recv ZSGSRD 29437
17-03-17 19:29:38.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:38.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:38.158 -07 000000512 INF: FPGA: Recv ZSGSRD 29437
17-03-17 19:29:38.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:38.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:38.168 -07 000000623 INF: FPGA: Recv ZSGSRD 29431
17-03-17 19:29:38.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:38.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:38.178 -07 000000551 INF: FPGA: Recv ZSGSRD 29439
17-03-17 19:29:38.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:29:38.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:38.188 -07 000000482 INF: FPGA: Recv ZSGSRD 29439
17-03-17 19:29:38.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:38.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:38.198 -07 000000623 INF: FPGA: Recv ZPIEZORD 25082
17-03-17 19:29:38.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:38.208 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.314 V. Piezo Error = -9.6 V.
17-03-17 19:29:38.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29436 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29437 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29431 (-128.6 uncal um), Max = 29439 (-128.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:29:38.208 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29436, posNoise = 3, negNoise = 5
17-03-17 19:29:38.208 -07 000000610 INF: Z Motor: After move to -0.129421, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:38.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:29:38.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:38.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:38.208 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:29:38.208 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:38.208 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:38.208 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:38.208 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:29:38.208 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:29:38.208 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:29:38.208 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:29:38.208 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:29:38.208 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:29:38.218 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:29:38.218 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:29:38.218 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:29:38.218 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:29:38.228 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 19:29:38.228 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 19:29:38.228 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:29:38.228 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:29:38.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28449 150\n [Camera]
17-03-17 19:29:38.428 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:29:38.838 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:29:38.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:29:38.838 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:38.838 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:38.838 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:29:38.838 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:29:38.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:29:38.838 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:38.838 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:38.838 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:29:39.028 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28449 787
17-03-17 19:29:39.178 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:29:39.208 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:29:39.208 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:29:39.208 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:39.208 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:29:39.208 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:29:39.218 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:39.218 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:29:39.218 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:29:39.218 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:29:39.228 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:29:39.368 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:29:39.378 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:29:39.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:29:39.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:29:39.378 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:39.488 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:39.498 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:39.498 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:29:39.498 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:39.498 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:29:39.558 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:29:39.558 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:29:39.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28449 150' command took 2 ms to send, 1318 ms to get response, and 1329 ms overall
17-03-17 19:29:39.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:29:39.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.689453125, Z-Position -0.129426460616011. ------
17-03-17 19:29:39.578 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13607 mm
17-03-17 19:29:39.578 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:29:39.588 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:39.588 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:39.588 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29724, sync = True, waitForSettling = False)
17-03-17 19:29:39.588 -07 000000512 INF: Z Motor: Moving to -0.136068 mm, started at -0.129426 mm, distance = -6.64 um
17-03-17 19:29:39.588 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:29:39.588 -07 000000569 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-17 19:29:39.598 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:39.598 -07 000000512 INF: FPGA: Xmit ZDACW 29724\n [Z Motor]
17-03-17 19:29:39.598 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:29:39.608 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:29:39.608 -07 000000512 INF: FPGA: 'ZDACW 29724' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:29:39.618 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:39.618 -07 000000475 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:29:39.628 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:39.628 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 19:29:39.628 -07 000000569 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:39.628 -07 000000569 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:29:39.628 -07 000000569 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:29:39.628 -07 000000478 INF: FPGA: Recv ZDACR 29724
17-03-17 19:29:39.638 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:29:39.638 -07 000000512 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:29:39.638 -07 000000512 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 19:29:39.808 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:29:39.808 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 19:29:39.878 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:29:39.878 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:29:39.878 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:39.878 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:39.888 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:29:39.888 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:29:39.888 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:39.888 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:29:39.888 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:39.888 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-17 19:29:40.018 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 19:29:40.018 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 387 ms overall
17-03-17 19:29:40.048 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:40.048 -07 000000438 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:29:40.058 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:29:40.058 -07 000000569 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:40.058 -07 000000569 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:29:40.058 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.179 mm/sec
17-03-17 19:29:41.008 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:41.008 -07 000000502 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:29:41.018 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:41.018 -07 000000569 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:41.048 -07 000000569 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:29:41.048 -07 000000569 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:29:41.048 -07 000000569 INF: Y Motor: Moved to 71.5200 after 1452 ms (table move)
17-03-17 19:29:41.048 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136068 mm (DAC = 29724)
17-03-17 19:29:41.048 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:41.048 -07 000000475 INF: FPGA: Recv ZSGSRD 30468
17-03-17 19:29:41.058 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:29:41.058 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:41.058 -07 000000512 INF: FPGA: Recv ZSGSRD 30464
17-03-17 19:29:41.068 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:41.068 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:41.068 -07 000000502 INF: FPGA: Recv ZSGSRD 30470
17-03-17 19:29:41.078 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:41.078 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:41.078 -07 000000626 INF: FPGA: Recv ZSGSRD 30475
17-03-17 19:29:41.088 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:41.088 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:41.088 -07 000000593 INF: FPGA: Recv ZSGSRD 30472
17-03-17 19:29:41.098 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:41.098 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:41.098 -07 000000627 INF: FPGA: Recv ZSGSRD 30473
17-03-17 19:29:41.108 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:41.108 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:41.108 -07 000000541 INF: FPGA: Recv ZSGSRD 30467
17-03-17 19:29:41.118 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:41.118 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:41.118 -07 000000482 INF: FPGA: Recv ZSGSRD 30470
17-03-17 19:29:41.128 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:41.128 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:41.128 -07 000000623 INF: FPGA: Recv ZSGSRD 30469
17-03-17 19:29:41.138 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:41.138 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:41.138 -07 000000502 INF: FPGA: Recv ZSGSRD 30473
17-03-17 19:29:41.148 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:41.148 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:41.148 -07 000000438 INF: FPGA: Recv ZPIEZORD 26483
17-03-17 19:29:41.158 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:41.158 -07 000000551 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.536 V. Piezo Error = -8.8 V.
17-03-17 19:29:41.158 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30470 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30470 (-135.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30464 (-135.2 uncal um), Max = 30475 (-135.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:29:41.158 -07 000000551 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30470, posNoise = 5, negNoise = 6
17-03-17 19:29:41.158 -07 000000551 INF: Z Motor: After move to -0.136068, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:41.158 -07 000000551 INF: Z Motor: Settle wait time = 1458 ms, measure time = 105 ms (allowed 150 ms), total time = 1563 ms
17-03-17 19:29:41.158 -07 000000551 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:29:41.208 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-17 19:29:41.208 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:29:41.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:41.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:41.208 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:41.208 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:29:41.208 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:41.208 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:41.208 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:29:41.208 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:29:41.218 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:41.218 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:29:41.228 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:29:41.228 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:29:41.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:29:41.278 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:29:41.358 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.000345,
17-03-17 19:29:41.468 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:29:41.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:29:41.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:29:41.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:29:41.518 -07 000000502 INF: FPGA: Recv @CAMSNAP 283
17-03-17 19:29:41.518 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:29:41.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 287 ms overall
17-03-17 19:29:41.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 19:29:41.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:41.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:29:41.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:29:41.618 -07 000000462 INF: Autofocus start
17-03-17 19:29:41.618 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:41.618 -07 000000462 INF: MeasureProfile start
17-03-17 19:29:41.618 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:41.628 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:29:41.628 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:29:41.628 -07 000000462 INF: MeasureProfile done
17-03-17 19:29:41.628 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:29:41.628 -07 000000462 INF: Autofocus finished
17-03-17 19:29:41.688 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:29:41.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:29:41.828 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:29:41.828 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 19:29:41.838 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.136069095970591. ----------
17-03-17 19:29:41.838 -07 000000610 INF: Cycle	26	Tile	15	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:29:41.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28248, sync = True, waitForSettling = True)
17-03-17 19:29:41.838 -07 000000610 INF: Z Motor: Moving to -0.129311 mm, started at -0.136069 mm, distance = 6.76 um
17-03-17 19:29:41.838 -07 000000610 INF: FPGA: Xmit ZDACW 28248\n [Z Motor]
17-03-17 19:29:41.838 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:29:41.848 -07 000000610 INF: FPGA: 'ZDACW 28248' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:29:41.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:41.848 -07 000000627 INF: FPGA: Recv ZDACR 28248
17-03-17 19:29:41.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:41.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:29:42.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:42.008 -07 000000475 INF: FPGA: Recv ZSGSRD 29423
17-03-17 19:29:42.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:42.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:42.018 -07 000000431 INF: FPGA: Recv ZSGSRD 29421
17-03-17 19:29:42.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:42.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:42.028 -07 000000623 INF: FPGA: Recv ZSGSRD 29420
17-03-17 19:29:42.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:42.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:42.038 -07 000000482 INF: FPGA: Recv ZSGSRD 29416
17-03-17 19:29:42.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:42.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:42.048 -07 000000608 INF: FPGA: Recv ZSGSRD 29420
17-03-17 19:29:42.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:42.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:42.058 -07 000000478 INF: FPGA: Recv ZSGSRD 29416
17-03-17 19:29:42.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:42.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:42.068 -07 000000551 INF: FPGA: Recv ZSGSRD 29418
17-03-17 19:29:42.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:42.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:42.078 -07 000000623 INF: FPGA: Recv ZSGSRD 29418
17-03-17 19:29:42.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:42.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:42.088 -07 000000569 INF: FPGA: Recv ZSGSRD 29425
17-03-17 19:29:42.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:42.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:42.098 -07 000000438 INF: FPGA: Recv ZSGSRD 29420
17-03-17 19:29:42.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:42.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:42.108 -07 000000431 INF: FPGA: Recv ZPIEZORD 25075
17-03-17 19:29:42.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:42.118 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.310 V. Piezo Error = -9.5 V.
17-03-17 19:29:42.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29420 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29420 (-128.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29416 (-128.5 uncal um), Max = 29425 (-128.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:29:42.118 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29420, posNoise = 5, negNoise = 4
17-03-17 19:29:42.118 -07 000000610 INF: Z Motor: After move to -0.129311, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:42.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:29:42.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:42.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:42.118 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:42.118 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:29:42.118 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:29:42.118 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:29:42.118 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:42.118 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:42.118 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:29:42.118 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:29:42.118 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:29:42.118 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:29:42.128 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:29:42.128 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:29:42.128 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:29:42.128 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:29:42.138 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:29:42.138 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:29:42.138 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:29:42.138 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:29:42.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28425 150\n [Camera]
17-03-17 19:29:42.338 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:29:42.738 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:29:42.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:29:42.738 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:42.738 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:42.738 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:29:42.738 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:29:42.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:29:42.748 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:42.748 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:42.748 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:29:42.928 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28425 787
17-03-17 19:29:43.078 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:29:43.118 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:29:43.118 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:29:43.118 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:43.118 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:29:43.118 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:29:43.118 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:43.118 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:43.118 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:29:43.128 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:43.128 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:29:43.278 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:29:43.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:29:43.278 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:43.398 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:29:43.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:29:43.398 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:43.408 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:43.408 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:29:43.408 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:43.408 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:29:43.468 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:29:43.468 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:29:43.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28425 150' command took 4 ms to send, 1324 ms to get response, and 1331 ms overall
17-03-17 19:29:43.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:29:43.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52001953125, Z-Position -0.129323673221742. ------
17-03-17 19:29:43.478 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13530 mm
17-03-17 19:29:43.478 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:29:43.478 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:43.478 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:29:43.478 -07 000000608 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 19:29:43.478 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29557, sync = True, waitForSettling = False)
17-03-17 19:29:43.478 -07 000000541 INF: Z Motor: Moving to -0.135303 mm, started at -0.129324 mm, distance = -5.98 um
17-03-17 19:29:43.478 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:43.488 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:29:43.488 -07 000000541 INF: FPGA: Xmit ZDACW 29557\n [Z Motor]
17-03-17 19:29:43.488 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:29:43.498 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:43.498 -07 000000541 INF: FPGA: 'ZDACW 29557' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:29:43.498 -07 000000438 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:29:43.508 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:29:43.508 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:29:43.508 -07 000000608 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:43.508 -07 000000608 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:29:43.508 -07 000000608 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:29:43.518 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:43.518 -07 000000475 INF: FPGA: Recv ZDACR 29557
17-03-17 19:29:43.528 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:29:43.528 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:29:43.528 -07 000000541 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 19:29:43.708 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:29:43.708 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:29:43.778 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:29:43.778 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:29:43.778 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:43.788 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:43.788 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:29:43.788 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:29:43.788 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:43.788 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:43.788 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 19:29:43.798 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:29:43.898 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 19:29:43.898 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 19:29:43.938 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:43.938 -07 000000478 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:29:43.948 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:29:43.948 -07 000000608 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:43.948 -07 000000608 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:29:43.948 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.843 mm, average velocity = 2.133 mm/sec
17-03-17 19:29:44.898 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:44.898 -07 000000478 INF: FPGA: Recv YRDPOS 148174
17-03-17 19:29:44.908 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:44.908 -07 000000608 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:44.938 -07 000000608 INF: Y Motor: After move to 72.362610, error = -0.012024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:29:44.938 -07 000000608 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:29:44.938 -07 000000608 INF: Y Motor: Moved to 72.3506 after 1454 ms (table move)
17-03-17 19:29:44.938 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135303 mm (DAC = 29557)
17-03-17 19:29:44.938 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:44.938 -07 000000623 INF: FPGA: Recv ZSGSRD 30352
17-03-17 19:29:44.948 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:29:44.948 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:44.948 -07 000000626 INF: FPGA: Recv ZSGSRD 30345
17-03-17 19:29:44.958 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:44.958 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:44.958 -07 000000429 INF: FPGA: Recv ZSGSRD 30349
17-03-17 19:29:44.968 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:44.968 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:44.968 -07 000000512 INF: FPGA: Recv ZSGSRD 30354
17-03-17 19:29:44.978 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:44.978 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:44.978 -07 000000551 INF: FPGA: Recv ZSGSRD 30357
17-03-17 19:29:44.988 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:44.988 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:44.988 -07 000000429 INF: FPGA: Recv ZSGSRD 30353
17-03-17 19:29:44.998 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:44.998 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:44.998 -07 000000431 INF: FPGA: Recv ZSGSRD 30349
17-03-17 19:29:45.008 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:45.008 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:45.008 -07 000000627 INF: FPGA: Recv ZSGSRD 30351
17-03-17 19:29:45.018 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:45.018 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:45.018 -07 000000438 INF: FPGA: Recv ZSGSRD 30346
17-03-17 19:29:45.028 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:45.028 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:45.028 -07 000000626 INF: FPGA: Recv ZSGSRD 30354
17-03-17 19:29:45.038 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:45.038 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:45.038 -07 000000012 INF: FPGA: Recv ZPIEZORD 26325
17-03-17 19:29:45.048 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:45.048 -07 000000569 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.510 V. Piezo Error = -8.9 V.
17-03-17 19:29:45.048 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30351 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30352 (-134.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30345 (-134.5 uncal um), Max = 30357 (-134.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:29:45.048 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30351, posNoise = 6, negNoise = 6
17-03-17 19:29:45.048 -07 000000569 INF: Z Motor: After move to -0.135303, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:45.048 -07 000000569 INF: Z Motor: Settle wait time = 1460 ms, measure time = 104 ms (allowed 150 ms), total time = 1564 ms
17-03-17 19:29:45.048 -07 000000569 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:29:45.098 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-17 19:29:45.098 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:29:45.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:45.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:45.098 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:45.098 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:45.098 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:29:45.098 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:45.098 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:29:45.108 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:29:45.108 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:45.108 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:29:45.118 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 19:29:45.118 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:29:45.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:29:45.158 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:29:45.358 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:29:45.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:29:45.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:29:45.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:29:45.398 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:29:45.398 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:29:45.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 19:29:45.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 19:29:45.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:45.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:29:45.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 19:29:45.598 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:45.598 -07 000000475 INF: Autofocus start
17-03-17 19:29:45.598 -07 000000475 INF: MeasureProfile start
17-03-17 19:29:45.598 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:45.608 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:29:45.608 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:29:45.608 -07 000000475 INF: MeasureProfile done
17-03-17 19:29:45.608 -07 000000475 INF: X=80  Z correction [um]=0.3608828
17-03-17 19:29:45.608 -07 000000475 INF: Autofocus finished
17-03-17 19:29:45.808 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:29:45.808 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:29:45.808 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3505859375, Z-position -0.135304614725722. ----------
17-03-17 19:29:45.808 -07 000000610 INF: Cycle	26	Tile	16	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:29:45.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28148, sync = True, waitForSettling = True)
17-03-17 19:29:45.818 -07 000000610 INF: Z Motor: Moving to -0.128853 mm, started at -0.135305 mm, distance = 6.45 um
17-03-17 19:29:45.818 -07 000000610 INF: FPGA: Xmit ZDACW 28148\n [Z Motor]
17-03-17 19:29:45.818 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:29:45.828 -07 000000610 INF: FPGA: 'ZDACW 28148' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:29:45.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:45.828 -07 000000502 INF: FPGA: Recv ZDACR 28148
17-03-17 19:29:45.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:45.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:29:45.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:45.988 -07 000000431 INF: FPGA: Recv ZSGSRD 29346
17-03-17 19:29:45.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:45.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:45.998 -07 000000569 INF: FPGA: Recv ZSGSRD 29356
17-03-17 19:29:46.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:46.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:46.008 -07 000000623 INF: FPGA: Recv ZSGSRD 29352
17-03-17 19:29:46.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:46.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:46.018 -07 000000012 INF: FPGA: Recv ZSGSRD 29345
17-03-17 19:29:46.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:46.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:46.028 -07 000000541 INF: FPGA: Recv ZSGSRD 29344
17-03-17 19:29:46.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:46.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:46.038 -07 000000502 INF: FPGA: Recv ZSGSRD 29344
17-03-17 19:29:46.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:46.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:46.048 -07 000000478 INF: FPGA: Recv ZSGSRD 29350
17-03-17 19:29:46.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:46.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:46.058 -07 000000429 INF: FPGA: Recv ZSGSRD 29343
17-03-17 19:29:46.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:46.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:46.068 -07 000000482 INF: FPGA: Recv ZSGSRD 29345
17-03-17 19:29:46.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:46.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:46.078 -07 000000475 INF: FPGA: Recv ZSGSRD 29348
17-03-17 19:29:46.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:46.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:46.088 -07 000000626 INF: FPGA: Recv ZPIEZORD 24979
17-03-17 19:29:46.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:46.098 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.295 V. Piezo Error = -9.6 V.
17-03-17 19:29:46.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29347 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29346 (-128.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29343 (-128.1 uncal um), Max = 29356 (-128.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:29:46.098 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29347, posNoise = 9, negNoise = 4
17-03-17 19:29:46.098 -07 000000610 INF: Z Motor: After move to -0.128853, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:46.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:29:46.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:46.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:46.098 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:46.098 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:29:46.098 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:46.098 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:29:46.098 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:29:46.098 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:46.098 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:29:46.098 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:29:46.098 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:29:46.098 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:29:46.108 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:46.108 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:29:46.108 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:29:46.108 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:29:46.118 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:29:46.118 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:29:46.118 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:29:46.118 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:29:46.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28325 150\n [Camera]
17-03-17 19:29:46.318 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:29:46.688 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:29:46.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:29:46.718 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.020806,
17-03-17 19:29:46.718 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:29:46.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:29:46.718 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:46.718 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:46.718 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:29:46.728 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:29:46.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:29:46.728 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:46.728 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:46.728 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:29:46.918 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28325 787
17-03-17 19:29:47.058 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:29:47.098 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:29:47.108 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:29:47.108 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:47.108 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:29:47.108 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:47.108 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:29:47.108 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:47.108 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:47.108 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:29:47.118 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:29:47.258 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:29:47.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:29:47.258 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:47.378 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:29:47.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:29:47.378 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:47.388 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:47.388 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:29:47.388 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:47.388 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:29:47.448 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:29:47.448 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:29:47.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28325 150' command took 2 ms to send, 1325 ms to get response, and 1329 ms overall
17-03-17 19:29:47.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:29:47.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3505859375, Z-Position -0.128854705735394. ------
17-03-17 19:29:47.458 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:47.458 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13543 mm
17-03-17 19:29:47.458 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:29:47.458 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:29:47.458 -07 000000475 INF: Y Motor: Moving to 73.1926 mm, started at 72.3506 mm, delta = 0.8420 mm
17-03-17 19:29:47.458 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:47.458 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29585, sync = True, waitForSettling = False)
17-03-17 19:29:47.458 -07 000000502 INF: Z Motor: Moving to -0.135431 mm, started at -0.128855 mm, distance = -6.58 um
17-03-17 19:29:47.468 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:47.468 -07 000000502 INF: FPGA: Xmit ZDACW 29585\n [Z Motor]
17-03-17 19:29:47.468 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:29:47.478 -07 000000502 INF: FPGA: 'ZDACW 29585' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:29:47.478 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:47.478 -07 000000623 INF: FPGA: Recv YRDPOS 148174
17-03-17 19:29:47.488 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:29:47.488 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:29:47.488 -07 000000475 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:47.488 -07 000000475 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:29:47.488 -07 000000475 INF: Y Motor: Moving 1347 steps-26
17-03-17 19:29:47.498 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:47.498 -07 000000626 INF: FPGA: Recv ZDACR 29585
17-03-17 19:29:47.508 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:29:47.508 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:29:47.508 -07 000000502 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 19:29:47.688 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:29:47.688 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:29:47.758 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:29:47.758 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:29:47.758 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:47.758 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:29:47.758 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:29:47.758 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:47.758 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:47.768 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:47.768 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 19:29:47.768 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:29:47.878 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 19:29:47.878 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 19:29:47.918 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:47.918 -07 000000462 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:29:47.928 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:29:47.928 -07 000000475 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:47.928 -07 000000475 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 19:29:47.928 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.842 mm, average velocity = 2.132 mm/sec
17-03-17 19:29:48.878 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:48.878 -07 000000502 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:29:48.888 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:48.888 -07 000000475 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:48.908 -07 000000475 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:29:48.908 -07 000000475 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:29:48.908 -07 000000475 INF: Y Motor: Moved to 73.1768 after 1449 ms (table move)
17-03-17 19:29:48.908 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135431 mm (DAC = 29585)
17-03-17 19:29:48.908 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:48.918 -07 000000626 INF: FPGA: Recv ZSGSRD 30371
17-03-17 19:29:48.918 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 4 ms overall
17-03-17 19:29:48.918 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:48.918 -07 000000462 INF: FPGA: Recv ZSGSRD 30370
17-03-17 19:29:48.928 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:29:48.928 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:48.928 -07 000000429 INF: FPGA: Recv ZSGSRD 30364
17-03-17 19:29:48.938 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:48.938 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:48.938 -07 000000593 INF: FPGA: Recv ZSGSRD 30373
17-03-17 19:29:48.948 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:48.948 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:48.948 -07 000000569 INF: FPGA: Recv ZSGSRD 30379
17-03-17 19:29:48.958 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:48.958 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:48.958 -07 000000462 INF: FPGA: Recv ZSGSRD 30367
17-03-17 19:29:48.968 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:48.968 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:48.968 -07 000000541 INF: FPGA: Recv ZSGSRD 30381
17-03-17 19:29:48.978 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:48.978 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:48.978 -07 000000462 INF: FPGA: Recv ZSGSRD 30376
17-03-17 19:29:48.988 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:48.988 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:48.988 -07 000000623 INF: FPGA: Recv ZSGSRD 30369
17-03-17 19:29:48.998 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:48.998 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:48.998 -07 000000551 INF: FPGA: Recv ZSGSRD 30375
17-03-17 19:29:49.008 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:49.008 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:49.008 -07 000000512 INF: FPGA: Recv ZPIEZORD 26391
17-03-17 19:29:49.018 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:49.018 -07 000000438 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.514 V. Piezo Error = -8.8 V.
17-03-17 19:29:49.018 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30372 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30372 (-134.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30364 (-134.6 uncal um), Max = 30381 (-134.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:29:49.018 -07 000000438 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30372, posNoise = 9, negNoise = 8
17-03-17 19:29:49.018 -07 000000438 INF: Z Motor: After move to -0.135431, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:49.018 -07 000000438 INF: Z Motor: Settle wait time = 1453 ms, measure time = 102 ms (allowed 150 ms), total time = 1555 ms
17-03-17 19:29:49.018 -07 000000438 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 19:29:49.068 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 19:29:49.068 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:29:49.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:49.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:49.068 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:49.068 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:49.078 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:29:49.078 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:49.078 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:29:49.078 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:29:49.078 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:49.078 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:29:49.088 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:29:49.088 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:29:49.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:29:49.138 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:29:49.328 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:29:49.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:29:49.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:29:49.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:29:49.368 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:29:49.378 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 19:29:49.378 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 19:29:49.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:29:49.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:49.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:29:49.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:29:49.478 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:49.478 -07 000000551 INF: Autofocus start
17-03-17 19:29:49.478 -07 000000551 INF: MeasureProfile start
17-03-17 19:29:49.478 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:49.488 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:29:49.488 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:29:49.488 -07 000000551 INF: MeasureProfile done
17-03-17 19:29:49.488 -07 000000551 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:29:49.488 -07 000000551 INF: Autofocus finished
17-03-17 19:29:49.688 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:29:49.688 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:29:49.688 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.135439523180699. ----------
17-03-17 19:29:49.688 -07 000000610 INF: Cycle	26	Tile	17	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:29:49.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28109, sync = True, waitForSettling = True)
17-03-17 19:29:49.698 -07 000000610 INF: Z Motor: Moving to -0.128675 mm, started at -0.135440 mm, distance = 6.76 um
17-03-17 19:29:49.698 -07 000000610 INF: FPGA: Xmit ZDACW 28109\n [Z Motor]
17-03-17 19:29:49.698 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:29:49.708 -07 000000610 INF: FPGA: 'ZDACW 28109' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:29:49.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:49.708 -07 000000478 INF: FPGA: Recv ZDACR 28109
17-03-17 19:29:49.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:49.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:29:49.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:49.868 -07 000000512 INF: FPGA: Recv ZSGSRD 29319
17-03-17 19:29:49.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:49.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:49.878 -07 000000429 INF: FPGA: Recv ZSGSRD 29321
17-03-17 19:29:49.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:49.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:49.888 -07 000000475 INF: FPGA: Recv ZSGSRD 29319
17-03-17 19:29:49.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:49.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:49.898 -07 000000569 INF: FPGA: Recv ZSGSRD 29315
17-03-17 19:29:49.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:49.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:49.908 -07 000000438 INF: FPGA: Recv ZSGSRD 29314
17-03-17 19:29:49.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:49.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:49.918 -07 000000593 INF: FPGA: Recv ZSGSRD 29323
17-03-17 19:29:49.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:49.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:49.928 -07 000000626 INF: FPGA: Recv ZSGSRD 29318
17-03-17 19:29:49.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:49.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:49.938 -07 000000541 INF: FPGA: Recv ZSGSRD 29319
17-03-17 19:29:49.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:49.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:49.948 -07 000000482 INF: FPGA: Recv ZSGSRD 29319
17-03-17 19:29:49.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:49.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:49.958 -07 000000438 INF: FPGA: Recv ZSGSRD 29322
17-03-17 19:29:49.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:49.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:49.968 -07 000000478 INF: FPGA: Recv ZPIEZORD 24978
17-03-17 19:29:49.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:49.978 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.289 V. Piezo Error = -9.5 V.
17-03-17 19:29:49.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29319 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29319 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29314 (-127.9 uncal um), Max = 29323 (-127.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:29:49.978 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29319, posNoise = 4, negNoise = 5
17-03-17 19:29:49.978 -07 000000610 INF: Z Motor: After move to -0.128675, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:49.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:29:49.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:49.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:49.978 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:49.978 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:29:49.978 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:49.978 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:49.978 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:29:49.978 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:29:49.978 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:29:49.978 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:29:49.978 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:29:49.978 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:29:49.988 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:29:49.988 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:29:49.988 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:29:49.988 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:29:49.998 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:29:49.998 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:29:49.998 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 19:29:49.998 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:29:49.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28286 150\n [Camera]
17-03-17 19:29:50.198 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:29:50.598 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:29:50.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:29:50.598 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:50.598 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:50.598 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:29:50.608 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:29:50.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:29:50.608 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:50.608 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:50.608 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:29:50.798 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28286 787
17-03-17 19:29:50.938 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:29:50.978 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:29:50.978 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:29:50.978 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:50.978 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:50.988 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:29:50.988 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:29:50.988 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:50.988 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:50.988 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:29:50.988 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:29:51.138 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:29:51.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:29:51.138 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:51.248 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:29:51.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:29:51.248 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:51.248 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:51.248 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:29:51.248 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:51.248 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:29:51.328 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:29:51.328 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:29:51.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28286 150' command took 2 ms to send, 1325 ms to get response, and 1329 ms overall
17-03-17 19:29:51.328 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:29:51.328 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.128674827795425. ------
17-03-17 19:29:51.338 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13504 mm
17-03-17 19:29:51.338 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:29:51.338 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:51.338 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:29:51.338 -07 000000623 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 19:29:51.338 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:51.338 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29500, sync = True, waitForSettling = False)
17-03-17 19:29:51.338 -07 000000512 INF: Z Motor: Moving to -0.135042 mm, started at -0.128675 mm, distance = -6.37 um
17-03-17 19:29:51.348 -07 000000512 INF: FPGA: Xmit ZDACW 29500\n [Z Motor]
17-03-17 19:29:51.348 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:29:51.348 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:29:51.358 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:51.358 -07 000000512 INF: FPGA: 'ZDACW 29500' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:29:51.358 -07 000000438 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:29:51.368 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:29:51.368 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:29:51.368 -07 000000623 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:51.368 -07 000000623 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:29:51.368 -07 000000623 INF: Y Motor: Moving 1353 steps-32
17-03-17 19:29:51.378 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:51.378 -07 000000608 INF: FPGA: Recv ZDACR 29500
17-03-17 19:29:51.388 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:29:51.388 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:29:51.388 -07 000000512 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 19:29:51.568 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:29:51.568 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:29:51.648 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 19:29:51.648 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:29:51.648 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:51.648 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:29:51.648 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:29:51.648 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:51.648 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:51.648 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:51.648 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 19:29:51.658 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:29:51.688 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:29:51.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:29:51.768 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:29:51.768 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-17 19:29:51.798 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:51.798 -07 000000431 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:29:51.808 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:51.808 -07 000000623 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:51.808 -07 000000623 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:29:51.808 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.846 mm, average velocity = 2.120 mm/sec
17-03-17 19:29:52.078 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.041198,
17-03-17 19:29:52.758 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:52.758 -07 000000475 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:29:52.768 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:52.768 -07 000000623 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:52.778 -07 000000623 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:29:52.778 -07 000000623 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:29:52.778 -07 000000623 INF: Y Motor: Moved to 74.0088 after 1441 ms (table move)
17-03-17 19:29:52.778 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135042 mm (DAC = 29500)
17-03-17 19:29:52.788 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:52.788 -07 000000627 INF: FPGA: Recv ZSGSRD 30313
17-03-17 19:29:52.798 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:52.798 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:52.798 -07 000000569 INF: FPGA: Recv ZSGSRD 30309
17-03-17 19:29:52.808 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:52.808 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:52.808 -07 000000429 INF: FPGA: Recv ZSGSRD 30309
17-03-17 19:29:52.818 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:52.818 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:52.818 -07 000000438 INF: FPGA: Recv ZSGSRD 30305
17-03-17 19:29:52.828 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:52.828 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:52.828 -07 000000627 INF: FPGA: Recv ZSGSRD 30311
17-03-17 19:29:52.838 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:52.838 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:52.838 -07 000000569 INF: FPGA: Recv ZSGSRD 30313
17-03-17 19:29:52.848 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:52.848 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:52.848 -07 000000541 INF: FPGA: Recv ZSGSRD 30310
17-03-17 19:29:52.858 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:52.858 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:52.858 -07 000000438 INF: FPGA: Recv ZSGSRD 30313
17-03-17 19:29:52.868 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:52.868 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:52.868 -07 000000626 INF: FPGA: Recv ZSGSRD 30315
17-03-17 19:29:52.878 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:52.878 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:52.878 -07 000000429 INF: FPGA: Recv ZSGSRD 30315
17-03-17 19:29:52.888 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:52.888 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:52.888 -07 000000478 INF: FPGA: Recv ZPIEZORD 26303
17-03-17 19:29:52.898 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:52.898 -07 000000462 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -8.8 V.
17-03-17 19:29:52.898 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30311 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30312 (-134.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30305 (-134.2 uncal um), Max = 30315 (-134.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:29:52.898 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30311, posNoise = 4, negNoise = 6
17-03-17 19:29:52.898 -07 000000462 INF: Z Motor: After move to -0.135042, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:52.898 -07 000000462 INF: Z Motor: Settle wait time = 1444 ms, measure time = 111 ms (allowed 150 ms), total time = 1555 ms
17-03-17 19:29:52.898 -07 000000462 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 19:29:52.938 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 19:29:52.938 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:29:52.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:52.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:52.938 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:52.938 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:52.938 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:29:52.938 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:52.938 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:29:52.938 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:29:52.948 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:52.948 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:29:52.958 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:29:52.958 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:29:52.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:29:53.008 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:29:53.198 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:29:53.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:29:53.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:29:53.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:29:53.238 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:29:53.238 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 19:29:53.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 19:29:53.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 19:29:53.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:53.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:29:53.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 19:29:53.548 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:53.548 -07 000000012 INF: Autofocus start
17-03-17 19:29:53.548 -07 000000012 INF: MeasureProfile start
17-03-17 19:29:53.548 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:53.558 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:29:53.558 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:29:53.558 -07 000000012 INF: MeasureProfile done
17-03-17 19:29:53.558 -07 000000012 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:29:53.558 -07 000000012 INF: Autofocus finished
17-03-17 19:29:53.758 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:29:53.758 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 19:29:53.768 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.135047646240051. ----------
17-03-17 19:29:53.768 -07 000000610 INF: Cycle	26	Tile	18	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:29:53.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28025, sync = True, waitForSettling = True)
17-03-17 19:29:53.768 -07 000000610 INF: Z Motor: Moving to -0.128290 mm, started at -0.135048 mm, distance = 6.76 um
17-03-17 19:29:53.768 -07 000000610 INF: FPGA: Xmit ZDACW 28025\n [Z Motor]
17-03-17 19:29:53.768 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:29:53.778 -07 000000610 INF: FPGA: 'ZDACW 28025' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:29:53.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:53.778 -07 000000502 INF: FPGA: Recv ZDACR 28025
17-03-17 19:29:53.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:53.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:29:53.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:53.938 -07 000000429 INF: FPGA: Recv ZSGSRD 29264
17-03-17 19:29:53.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:53.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:53.948 -07 000000627 INF: FPGA: Recv ZSGSRD 29257
17-03-17 19:29:53.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:53.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:53.958 -07 000000462 INF: FPGA: Recv ZSGSRD 29255
17-03-17 19:29:53.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:53.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:53.968 -07 000000502 INF: FPGA: Recv ZSGSRD 29263
17-03-17 19:29:53.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:53.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:53.978 -07 000000012 INF: FPGA: Recv ZSGSRD 29257
17-03-17 19:29:53.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:53.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:53.988 -07 000000623 INF: FPGA: Recv ZSGSRD 29262
17-03-17 19:29:53.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:53.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:53.998 -07 000000627 INF: FPGA: Recv ZSGSRD 29260
17-03-17 19:29:54.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:54.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:54.008 -07 000000478 INF: FPGA: Recv ZSGSRD 29261
17-03-17 19:29:54.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:54.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:54.018 -07 000000502 INF: FPGA: Recv ZSGSRD 29251
17-03-17 19:29:54.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:54.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:54.028 -07 000000431 INF: FPGA: Recv ZSGSRD 29253
17-03-17 19:29:54.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:54.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:54.038 -07 000000429 INF: FPGA: Recv ZPIEZORD 24915
17-03-17 19:29:54.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:54.048 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -9.5 V.
17-03-17 19:29:54.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29258 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29258 (-127.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29251 (-127.5 uncal um), Max = 29264 (-127.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:29:54.048 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29258, posNoise = 6, negNoise = 7
17-03-17 19:29:54.048 -07 000000610 INF: Z Motor: After move to -0.128290, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:54.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:29:54.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:54.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:54.048 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:54.048 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:54.048 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:29:54.048 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:54.048 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:29:54.048 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:29:54.048 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:29:54.048 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:29:54.048 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:29:54.048 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:29:54.058 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:54.058 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:29:54.058 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:29:54.058 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:29:54.068 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:29:54.068 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:29:54.068 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:29:54.068 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:29:54.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28201 150\n [Camera]
17-03-17 19:29:54.268 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:29:54.668 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:29:54.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:29:54.668 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:54.668 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:54.668 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:29:54.678 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:29:54.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:29:54.678 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:54.678 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:54.678 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:29:54.868 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28201 787
17-03-17 19:29:55.008 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:29:55.048 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:29:55.048 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:29:55.048 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:55.048 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:55.048 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:29:55.048 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:29:55.048 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:55.058 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:29:55.058 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:29:55.058 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:29:55.208 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:29:55.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:29:55.208 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:55.318 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:29:55.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:29:55.318 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:55.328 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:55.328 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:55.328 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:29:55.328 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:29:55.398 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:29:55.398 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:29:55.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28201 150' command took 4 ms to send, 1325 ms to get response, and 1329 ms overall
17-03-17 19:29:55.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:29:55.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.128282950854777. ------
17-03-17 19:29:55.408 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:55.408 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13465 mm
17-03-17 19:29:55.408 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:29:55.408 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:55.408 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:29:55.408 -07 000000475 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 19:29:55.408 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29414, sync = True, waitForSettling = False)
17-03-17 19:29:55.408 -07 000000502 INF: Z Motor: Moving to -0.134649 mm, started at -0.128283 mm, distance = -6.37 um
17-03-17 19:29:55.418 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:29:55.418 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:55.418 -07 000000541 INF: FPGA: Recv YRDPOS 151571
17-03-17 19:29:55.428 -07 000000502 INF: FPGA: Xmit ZDACW 29414\n [Z Motor]
17-03-17 19:29:55.428 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:29:55.428 -07 000000475 INF: Y Motor: Encoder = 151571 = motor step 118414.8 = 74.0093 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:55.428 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:29:55.428 -07 000000475 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:29:55.428 -07 000000475 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:29:55.438 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:29:55.438 -07 000000502 INF: FPGA: 'ZDACW 29414' command took 2 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:29:55.448 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:29:55.458 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:55.458 -07 000000512 INF: FPGA: Recv ZDACR 29414
17-03-17 19:29:55.468 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:29:55.468 -07 000000502 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 19:29:55.638 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:29:55.638 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:29:55.708 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:29:55.708 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:29:55.708 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:55.708 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:29:55.718 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:29:55.718 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:29:55.718 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:55.718 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:29:55.718 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:55.718 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 19:29:55.818 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 19:29:55.818 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 19:29:55.878 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:55.878 -07 000000627 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:29:55.888 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:29:55.888 -07 000000475 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:55.888 -07 000000475 INF: Y Motor: Position error before settling (table move) = -40 encoder counts (-0.020 mm)
17-03-17 19:29:55.888 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.158 mm/sec
17-03-17 19:29:56.688 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:29:56.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 25. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:29:56.838 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:56.838 -07 000000593 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:29:56.848 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:29:56.848 -07 000000475 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:56.868 -07 000000475 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:29:56.868 -07 000000475 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:29:56.868 -07 000000475 INF: Y Motor: Moved to 74.8330 after 1457 ms (table move)
17-03-17 19:29:56.868 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134649 mm (DAC = 29414)
17-03-17 19:29:56.868 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:56.878 -07 000000608 INF: FPGA: Recv ZSGSRD 30259
17-03-17 19:29:56.878 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:29:56.878 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:56.878 -07 000000429 INF: FPGA: Recv ZSGSRD 30241
17-03-17 19:29:56.888 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:56.888 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:56.888 -07 000000502 INF: FPGA: Recv ZSGSRD 30255
17-03-17 19:29:56.898 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:56.898 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:56.898 -07 000000626 INF: FPGA: Recv ZSGSRD 30258
17-03-17 19:29:56.908 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:56.908 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:56.908 -07 000000608 INF: FPGA: Recv ZSGSRD 30244
17-03-17 19:29:56.918 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:56.918 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:56.918 -07 000000569 INF: FPGA: Recv ZSGSRD 30239
17-03-17 19:29:56.928 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:56.928 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:56.928 -07 000000541 INF: FPGA: Recv ZSGSRD 30242
17-03-17 19:29:56.938 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:56.938 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:56.938 -07 000000478 INF: FPGA: Recv ZSGSRD 30244
17-03-17 19:29:56.948 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:56.948 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:56.948 -07 000000475 INF: FPGA: Recv ZSGSRD 30248
17-03-17 19:29:56.958 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:56.958 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:56.958 -07 000000502 INF: FPGA: Recv ZSGSRD 30252
17-03-17 19:29:56.968 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:56.968 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:56.968 -07 000000512 INF: FPGA: Recv ZPIEZORD 26286
17-03-17 19:29:56.978 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:56.978 -07 000000623 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.488 V. Piezo Error = -8.7 V.
17-03-17 19:29:56.978 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30248 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30246 (-133.8 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30239 (-133.8 uncal um), Max = 30259 (-133.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:29:56.978 -07 000000623 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30248, posNoise = 11, negNoise = 9
17-03-17 19:29:56.978 -07 000000623 INF: Z Motor: After move to -0.134649, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:56.978 -07 000000623 INF: Z Motor: Settle wait time = 1460 ms, measure time = 103 ms (allowed 150 ms), total time = 1563 ms
17-03-17 19:29:56.978 -07 000000623 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:29:57.028 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-17 19:29:57.028 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:29:57.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:57.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:57.028 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:57.028 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:57.028 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:29:57.028 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:57.028 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:29:57.028 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:29:57.038 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:57.038 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:29:57.038 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:29:57.038 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:29:57.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:29:57.088 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:29:57.288 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:29:57.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:29:57.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:29:57.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:29:57.328 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:29:57.328 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 19:29:57.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 19:29:57.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:29:57.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:57.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:29:57.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:29:57.428 -07 000000608 INF: Autofocus start
17-03-17 19:29:57.428 -07 000000608 INF: MeasureProfile start
17-03-17 19:29:57.438 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.004458,
17-03-17 19:29:57.448 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:29:57.448 -07 000000608 INF: MeasureProfile done
17-03-17 19:29:57.448 -07 000000608 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:29:57.448 -07 000000608 INF: Autofocus finished
17-03-17 19:29:57.448 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:29:57.458 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:29:57.458 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:29:57.658 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:29:57.658 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:29:57.668 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.13464292087512. ----------
17-03-17 19:29:57.668 -07 000000610 INF: Cycle	26	Tile	19	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:29:57.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27938, sync = True, waitForSettling = True)
17-03-17 19:29:57.668 -07 000000610 INF: Z Motor: Moving to -0.127892 mm, started at -0.134643 mm, distance = 6.75 um
17-03-17 19:29:57.668 -07 000000610 INF: FPGA: Xmit ZDACW 27938\n [Z Motor]
17-03-17 19:29:57.668 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:29:57.678 -07 000000610 INF: FPGA: 'ZDACW 27938' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:29:57.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:29:57.678 -07 000000608 INF: FPGA: Recv ZDACR 27938
17-03-17 19:29:57.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:57.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:29:57.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:57.838 -07 000000608 INF: FPGA: Recv ZSGSRD 29197
17-03-17 19:29:57.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:57.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:57.858 -07 000000438 INF: FPGA: Recv ZSGSRD 29197
17-03-17 19:29:57.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:29:57.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:57.888 -07 000000541 INF: FPGA: Recv ZSGSRD 29198
17-03-17 19:29:57.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:29:57.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:57.898 -07 000000626 INF: FPGA: Recv ZSGSRD 29199
17-03-17 19:29:57.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:57.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:57.908 -07 000000623 INF: FPGA: Recv ZSGSRD 29198
17-03-17 19:29:57.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:57.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:57.918 -07 000000593 INF: FPGA: Recv ZSGSRD 29195
17-03-17 19:29:57.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:57.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:57.928 -07 000000569 INF: FPGA: Recv ZSGSRD 29197
17-03-17 19:29:57.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:57.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:57.938 -07 000000551 INF: FPGA: Recv ZSGSRD 29193
17-03-17 19:29:57.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:57.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:57.948 -07 000000512 INF: FPGA: Recv ZSGSRD 29195
17-03-17 19:29:57.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:57.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:29:57.958 -07 000000627 INF: FPGA: Recv ZSGSRD 29196
17-03-17 19:29:57.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:57.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:29:57.968 -07 000000502 INF: FPGA: Recv ZPIEZORD 24865
17-03-17 19:29:57.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:29:57.978 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.263 V. Piezo Error = -9.5 V.
17-03-17 19:29:57.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29196 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29197 (-127.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29193 (-127.1 uncal um), Max = 29199 (-127.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:29:57.978 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29196, posNoise = 3, negNoise = 3
17-03-17 19:29:57.978 -07 000000610 INF: Z Motor: After move to -0.127892, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:29:57.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 308 ms)
17-03-17 19:29:57.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:29:57.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:29:57.978 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:29:57.978 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:29:57.978 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:29:57.978 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:29:57.978 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:29:57.978 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:29:57.978 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:29:57.978 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:29:57.978 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:29:57.978 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:29:57.988 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:29:57.988 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:29:57.988 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:29:57.988 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:29:57.998 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:29:57.998 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:29:57.998 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:29:57.998 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:29:57.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28114 150\n [Camera]
17-03-17 19:29:58.198 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:29:58.598 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:29:58.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:29:58.598 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:58.598 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:58.598 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:29:58.598 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:29:58.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:29:58.598 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:58.598 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:58.598 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:29:58.788 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28114 787
17-03-17 19:29:58.938 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:29:58.978 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:29:58.978 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:29:58.978 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:58.978 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:29:58.978 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:29:58.978 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:58.978 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:58.978 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:29:58.988 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:29:58.998 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:29:59.138 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:29:59.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:29:59.138 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:29:59.138 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:29:59.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:29:59.138 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:29:59.148 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:29:59.148 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:29:59.148 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:29:59.148 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:29:59.328 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:29:59.328 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:29:59.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28114 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-17 19:29:59.518 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:29:59.518 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:29:59.518 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:59.518 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:29:59.518 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:29:59.518 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:29:59.528 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:29:59.528 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:29:59.528 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:29:59.528 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:29:59.538 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:29:59.568 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 19:29:59.568 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:29:59.608 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 19:29:59.638 -07 000000610 INF: Enabling Skipping AutoFocus in the next 3 cycles.
17-03-17 19:29:59.638 -07 000000610 INF: Imaging Cycle 26: ScanTilesCommand Cycle 26 time end. Duration was 163583 ms.
17-03-17 19:29:59.638 -07 000000610 INF: =================== Cycle #26 ===================
17-03-17 19:29:59.638 -07 000000610 INF: ===================  ===================
17-03-17 19:29:59.638 -07 000000462 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:29:59.638 -07 000000012 INF: FPGA: Recv EXLED1ADCR 28
17-03-17 19:29:59.648 -07 000000462 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:29:59.648 -07 000000462 INF: GreenLED: Using Green data: Photodiode ADC 28 --> 0.0 mW (old method), or 2.1 mW (new method). Difference = 2.1 mW
17-03-17 19:29:59.648 -07 000000462 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 26, FrontChillerTemperature: 4.004458, FrontChillerHeatSinkTemperature: 0.162582, AmbientTemperature: 18.91434, FlowCellCompartmentTemperature: 21.99692, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.68885, GreenLEDSensorTemperature: 26.2439, PhotodiodePowerAdcGreen: 28, PhotodiodePowerMwGreen: 2.10942
17-03-17 19:29:59.658 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.