17-03-17 19:29:59.718 -07 000000610 INF: =================== Cycle #27 ===================
17-03-17 19:29:59.718 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 19:29:59.718 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-17 19:29:59.718 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:29:59.718 -07 000000593 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:29:59.728 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:29:59.728 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:29:59.728 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 19:29:59.728 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 19:29:59.728 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 19:29:59.838 -07 000000429 INF: FPGA: Recv YMVTO 154377 870
17-03-17 19:29:59.838 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 19:29:59.838 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 19:29:59.838 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 870 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 19:29:59.838 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.720 mm/sec
17-03-17 19:30:01.688 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:30:01.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:30:02.818 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.970374,
17-03-17 19:30:02.838 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:30:02.838 -07 000000482 INF: FPGA: Recv YRDPOS 154379
17-03-17 19:30:02.848 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:30:02.848 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:30:02.868 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:30:02.868 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 19:30:02.868 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3149 ms
17-03-17 19:30:02.878 -07 000000610 INF: =================== Cycle #27, Flow Cell Temp 60° ===================
17-03-17 19:30:02.878 -07 000000610 INF: =================== Cycle #27, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 19:30:02.878 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 19:30:02.878 -07 000000438 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:30:03.248 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:30:03.258 -07 000000627 INF: FPGA: Recv TEC2EN 
17-03-17 19:30:03.268 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 11 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:30:03.268 -07 000000610 INF: =================== Cycle #27, Flow Cell Temp 60° ===================
17-03-17 19:30:03.268 -07 000000610 INF: =================== Cycle #27 ===================
17-03-17 19:30:03.268 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:30:03.268 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:30:03.298 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:30:03.298 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 19:30:03.298 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:30:03.598 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:30:03.618 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:30:03.618 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:30:03.668 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:30:03.688 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:30:03.688 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:30:03.788 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3) ===================
17-03-17 19:30:03.788 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:30:03.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:30:03.818 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:30:03.818 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:30:03.818 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:30:03.948 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:30:03.988 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:30:06.688 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:30:06.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:30:07.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:07.148 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:30:07.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:07.598 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:30:08.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:08.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:08.048 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:30:08.048 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3) ===================
17-03-17 19:30:08.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:30:08.188 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.969015,
17-03-17 19:30:08.208 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:30:08.208 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:30:08.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:30:08.368 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:30:08.368 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:30:08.368 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:30:08.498 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:30:08.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:08.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:08.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:08.988 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:30:08.988 -07 000000610 INF: =================== Cycle #27 ===================
17-03-17 19:30:10.208 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 19:30:10.208 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 19:30:10.208 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:30:10.228 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:30:10.228 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 19:30:10.228 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 19:30:10.368 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:30:10.388 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 19:30:10.388 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 19:30:10.438 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:30:10.458 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:30:10.458 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:30:10.558 -07 000000610 INF: =================== Cycle #27, Pumping Reagent CMS (4) ===================
17-03-17 19:30:10.558 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:30:10.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:30:10.588 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:30:10.588 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:30:10.588 -07 000000610 INF: =================== Cycle #27, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 19:30:10.718 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:30:10.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:30:11.688 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:30:11.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=335, Total=648. Warn if over 250 bubbles per interval.
17-03-17 19:30:12.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:12.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:30:12.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:12.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:12.678 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:30:12.678 -07 000000610 INF: =================== Cycle #27, Pumping Reagent CMS (4) ===================
17-03-17 19:30:12.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:30:12.838 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:30:12.838 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:30:12.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:30:12.998 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:30:12.998 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:30:12.998 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:30:13.128 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:30:13.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:13.548 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.988112,
17-03-17 19:30:13.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:13.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:13.618 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:30:13.618 -07 000000610 INF: =================== Cycle #27 ===================
17-03-17 19:30:14.838 -07 000000610 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:30:14.838 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:30:14.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:30:14.858 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:30:14.858 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 19:30:14.858 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 19:30:15.008 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:30:15.028 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 19:30:15.028 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 19:30:15.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:30:15.098 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:30:15.098 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:30:15.198 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3) ===================
17-03-17 19:30:15.198 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:30:15.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:30:15.228 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:30:15.228 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:30:15.228 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:30:15.358 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:30:15.398 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:30:16.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:16.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:16.298 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:30:16.298 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3) ===================
17-03-17 19:30:16.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:30:16.458 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:30:16.458 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:30:16.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:30:16.618 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:30:16.618 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:30:16.618 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:30:16.688 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 19:30:16.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=336, Total=649. Warn if over 250 bubbles per interval.
17-03-17 19:30:16.748 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:30:16.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:17.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:17.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:17.238 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:30:17.238 -07 000000610 INF: =================== Cycle #27 ===================
17-03-17 19:30:17.238 -07 000000593 INF: WaitCommand(10000) start
17-03-17 19:30:17.238 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:30:17.238 -07 000000626 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:30:18.458 -07 000000626 INF: AsyncDelayTimer waited 1213ms
17-03-17 19:30:18.458 -07 000000626 INF: LanePump: Xmit /1?\r
17-03-17 19:30:18.488 -07 000000626 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:30:18.488 -07 000000626 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:30:18.618 -07 000000626 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:30:18.658 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:30:18.908 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.026244,
17-03-17 19:30:20.188 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:20.218 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:30:20.638 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:20.668 -07 000000626 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:20.668 -07 000000626 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:30:20.668 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:30:20.668 -07 000000626 INF: ===================  ===================
17-03-17 19:30:21.688 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:30:21.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=336, Total=649. Warn if over 250 bubbles per interval.
17-03-17 19:30:24.268 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.019446,
17-03-17 19:30:26.688 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:30:26.688 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=313, R2=336, Total=649. Warn if over 250 bubbles per interval.
17-03-17 19:30:27.248 -07 000000593 INF: WaitCommand(10000) end
17-03-17 19:30:27.248 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3) ===================
17-03-17 19:30:27.248 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 19:30:27.248 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:30:27.288 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:30:27.288 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:30:27.288 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:30:27.418 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 19:30:27.458 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:30:29.628 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.994908,
17-03-17 19:30:31.688 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 19:30:31.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=10, R2=10, Total=20. Bubbles this run: R1=314, R2=337, Total=651. Warn if over 250 bubbles per interval.
17-03-17 19:30:33.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:33.618 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:30:34.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:34.068 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:30:34.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:34.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:30:34.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:34.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:30:34.988 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.012614,
17-03-17 19:30:35.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:35.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:35.418 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 19:30:35.418 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3) ===================
17-03-17 19:30:35.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:30:35.578 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:30:35.578 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:30:35.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:30:35.738 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:30:35.738 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:30:35.738 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:30:35.868 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:30:35.898 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:36.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:36.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:36.358 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:30:36.358 -07 000000610 INF: =================== Cycle #27 ===================
17-03-17 19:30:36.698 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 10 R1 12
17-03-17 19:30:36.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=12, R2=10, Total=22. Max bubbles per interval: R1=12, R2=10, Total=22. Bubbles this run: R1=326, R2=347, Total=673. Warn if over 250 bubbles per interval.
17-03-17 19:30:37.578 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 19:30:37.578 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 19:30:37.578 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:30:37.598 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:30:37.598 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 19:30:37.598 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 19:30:37.808 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:30:37.828 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 19:30:37.828 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 19:30:37.878 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:30:37.898 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:30:37.898 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:30:37.998 -07 000000610 INF: =================== Cycle #27, Pumping Reagent IMT (1) ===================
17-03-17 19:30:37.998 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:30:37.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:30:38.028 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:30:38.028 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:30:38.028 -07 000000610 INF: =================== Cycle #27, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 19:30:38.158 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:30:38.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:30:39.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:39.668 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:30:40.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:40.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:40.118 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:30:40.118 -07 000000610 INF: =================== Cycle #27, Pumping Reagent IMT (1) ===================
17-03-17 19:30:40.248 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:30:40.278 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:30:40.278 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:30:40.348 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.986717,
17-03-17 19:30:40.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:30:40.438 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:30:40.438 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:30:40.438 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:30:40.568 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:30:40.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:41.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:41.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:41.058 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:30:41.058 -07 000000610 INF: =================== Cycle #27 ===================
17-03-17 19:30:41.698 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 11 R1 12
17-03-17 19:30:41.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=12, R2=11, Total=23. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=338, R2=358, Total=696. Warn if over 250 bubbles per interval.
17-03-17 19:30:42.278 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:30:42.278 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:30:42.278 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:30:42.298 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:30:42.298 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 19:30:42.298 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:30:42.528 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:30:42.548 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 19:30:42.548 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 19:30:42.598 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:30:42.618 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:30:42.618 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:30:42.718 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3) ===================
17-03-17 19:30:42.718 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:30:42.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:30:42.748 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:30:42.748 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:30:42.748 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:30:42.878 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:30:42.918 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:30:43.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:43.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:43.818 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:30:43.818 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3) ===================
17-03-17 19:30:43.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:30:43.978 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:30:43.978 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:30:44.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:30:44.138 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:30:44.138 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:30:44.138 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:30:44.268 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:30:44.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:44.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:30:44.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:30:44.758 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:30:44.758 -07 000000610 INF: =================== Cycle #27 ===================
17-03-17 19:30:44.758 -07 000000610 INF: =================== Cycle #27, Flow Cell Temp 65° ===================
17-03-17 19:30:44.758 -07 000000610 INF: =================== Cycle #27, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 19:30:44.758 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 19:30:44.758 -07 000000569 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:30:44.768 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:30:44.768 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:30:44.768 -07 000000012 INF: FPGA: Recv TEC2EN 
17-03-17 19:30:44.778 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:30:44.778 -07 000000610 INF: =================== Cycle #27, Flow Cell Temp 65° ===================
17-03-17 19:30:44.778 -07 000000610 INF: =================== Cycle #27 ===================
17-03-17 19:30:44.778 -07 000000610 INF: WaitCommand(30000) start
17-03-17 19:30:45.708 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.004458,
17-03-17 19:30:46.698 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-17 19:30:46.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=340, R2=361, Total=701. Warn if over 250 bubbles per interval.
17-03-17 19:30:51.068 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.007176,
17-03-17 19:30:51.698 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:30:51.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=340, R2=361, Total=701. Warn if over 250 bubbles per interval.
17-03-17 19:30:56.428 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.981281,
17-03-17 19:30:56.698 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 19:30:56.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=340, R2=362, Total=702. Warn if over 250 bubbles per interval.
17-03-17 19:31:01.698 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:31:01.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=340, R2=362, Total=702. Warn if over 250 bubbles per interval.
17-03-17 19:31:01.788 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.969015,
17-03-17 19:31:06.698 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:31:06.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=340, R2=362, Total=702. Warn if over 250 bubbles per interval.
17-03-17 19:31:07.148 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.981281,
17-03-17 19:31:11.698 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:31:11.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=340, R2=362, Total=702. Warn if over 250 bubbles per interval.
17-03-17 19:31:12.508 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.004458,
17-03-17 19:31:14.788 -07 000000610 INF: WaitCommand(30000) end
17-03-17 19:31:14.788 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3) ===================
17-03-17 19:31:14.788 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 19:31:14.888 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:31:14.918 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:31:14.918 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:31:14.918 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:31:15.048 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 19:31:15.088 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:31:15.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:31:15.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:31:15.658 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 19:31:15.658 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3) ===================
17-03-17 19:31:15.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:31:15.818 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:31:15.818 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:31:15.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:31:15.978 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:31:15.978 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:31:15.978 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:31:16.108 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:31:16.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:31:16.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:31:16.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:31:16.598 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:31:16.598 -07 000000610 INF: =================== Cycle #27 ===================
17-03-17 19:31:16.598 -07 000000502 INF: WaitCommand(30000) start
17-03-17 19:31:16.598 -07 000000623 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:31:16.598 -07 000000623 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:31:16.698 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:31:16.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=340, R2=362, Total=702. Warn if over 250 bubbles per interval.
17-03-17 19:31:17.818 -07 000000623 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:31:17.818 -07 000000623 INF: LanePump: Xmit /1?\r
17-03-17 19:31:17.848 -07 000000623 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:31:17.848 -07 000000623 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:31:17.868 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.993549,
17-03-17 19:31:17.978 -07 000000623 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:31:18.018 -07 000000623 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:31:20.358 -07 000000623 INF: LanePump: Xmit /1Q\r
17-03-17 19:31:20.388 -07 000000623 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:31:20.808 -07 000000623 INF: LanePump: Xmit /1Q\r
17-03-17 19:31:20.838 -07 000000623 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:31:20.838 -07 000000623 INF: LanePump: Waited 2820 ms for pump motion to complete
17-03-17 19:31:20.838 -07 000000623 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:31:20.838 -07 000000623 INF: ===================  ===================
17-03-17 19:31:21.698 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:31:21.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=340, R2=362, Total=702. Warn if over 250 bubbles per interval.
17-03-17 19:31:23.228 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.012614,
17-03-17 19:31:26.698 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:31:26.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=340, R2=362, Total=702. Warn if over 250 bubbles per interval.
17-03-17 19:31:28.588 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.024884,
17-03-17 19:31:31.698 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:31:31.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=340, R2=362, Total=702. Warn if over 250 bubbles per interval.
17-03-17 19:31:33.948 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.031682,
17-03-17 19:31:36.698 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:31:36.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=340, R2=362, Total=702. Warn if over 250 bubbles per interval.
17-03-17 19:31:39.308 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.003063,
17-03-17 19:31:41.698 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:31:41.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=340, R2=362, Total=702. Warn if over 250 bubbles per interval.
17-03-17 19:31:44.668 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.986717,
17-03-17 19:31:46.608 -07 000000502 INF: WaitCommand(30000) end
17-03-17 19:31:46.608 -07 000000610 INF: =================== Cycle #27, Flow Cell Temp 22° ===================
17-03-17 19:31:46.608 -07 000000610 INF: =================== Cycle #27, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 19:31:46.608 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 19:31:46.608 -07 000000551 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:31:46.618 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:31:46.618 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:31:46.618 -07 000000623 INF: FPGA: Recv TEC2EN 
17-03-17 19:31:46.628 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:31:46.628 -07 000000610 INF: =================== Cycle #27, Flow Cell Temp 22° ===================
17-03-17 19:31:46.628 -07 000000610 INF: =================== Cycle #27 ===================
17-03-17 19:31:46.628 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3) ===================
17-03-17 19:31:46.628 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:31:46.628 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:31:46.668 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:31:46.668 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:31:46.668 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:31:46.698 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:31:46.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=340, R2=362, Total=702. Warn if over 250 bubbles per interval.
17-03-17 19:31:46.798 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:31:46.838 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:31:49.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:31:49.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:31:50.028 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.98264,
17-03-17 19:31:50.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:31:50.448 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:31:50.868 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:31:50.898 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:31:50.898 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:31:50.898 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3) ===================
17-03-17 19:31:51.028 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:31:51.058 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:31:51.058 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:31:51.188 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:31:51.218 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:31:51.218 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:31:51.218 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:31:51.348 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:31:51.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:31:51.698 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:31:51.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=340, R2=362, Total=702. Warn if over 250 bubbles per interval.
17-03-17 19:31:51.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:31:51.838 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:31:51.838 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:31:51.838 -07 000000610 INF: =================== Cycle #27 ===================
17-03-17 19:31:53.058 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:31:53.058 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 19:31:53.058 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:31:53.078 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:31:53.078 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 19:31:53.078 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 19:31:53.228 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:31:53.248 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:31:53.248 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:31:53.298 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:31:53.318 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:31:53.318 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:31:53.418 -07 000000610 INF: =================== Cycle #27, Pumping Reagent USM (2) ===================
17-03-17 19:31:53.418 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:31:53.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:31:53.448 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:31:53.448 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:31:53.448 -07 000000610 INF: =================== Cycle #27, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 19:31:53.578 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:31:53.618 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:31:55.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:31:55.088 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:31:55.388 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.973092,
17-03-17 19:31:55.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:31:55.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:31:55.538 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:31:55.538 -07 000000610 INF: =================== Cycle #27, Pumping Reagent USM (2) ===================
17-03-17 19:31:55.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:31:55.698 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:31:55.698 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:31:55.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:31:55.858 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:31:55.858 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:31:55.858 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:31:55.988 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:31:56.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:31:56.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:31:56.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:31:56.478 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:31:56.478 -07 000000610 INF: =================== Cycle #27 ===================
17-03-17 19:31:56.698 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:31:56.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=340, R2=362, Total=702. Warn if over 250 bubbles per interval.
17-03-17 19:31:57.698 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:31:57.698 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:31:57.698 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:31:57.718 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:31:57.718 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 19:31:57.718 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:31:57.868 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:31:57.888 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:31:57.888 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:31:57.938 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:31:57.958 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:31:57.958 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:31:58.058 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3) ===================
17-03-17 19:31:58.058 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:31:58.058 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:31:58.088 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:31:58.088 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:31:58.088 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:31:58.218 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:31:58.258 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:31:59.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:31:59.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:31:59.158 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:31:59.158 -07 000000610 INF: =================== Cycle #27, Pumping Reagent PR2 (3) ===================
17-03-17 19:31:59.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:31:59.318 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:31:59.318 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:31:59.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:31:59.478 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:31:59.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:31:59.478 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:31:59.608 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:31:59.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:32:00.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:32:00.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:32:00.098 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:32:00.098 -07 000000610 INF: =================== Cycle #27 ===================
17-03-17 19:32:00.098 -07 000000429 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:32:00.098 -07 000000438 INF: WaitCommand(10000) start
17-03-17 19:32:00.098 -07 000000429 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:32:00.748 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.020806,
17-03-17 19:32:01.318 -07 000000429 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:32:01.318 -07 000000429 INF: LanePump: Xmit /1?\r
17-03-17 19:32:01.348 -07 000000429 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:32:01.348 -07 000000429 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:32:01.478 -07 000000429 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:32:01.518 -07 000000429 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:32:01.698 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-17 19:32:01.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=362, Total=704. Warn if over 250 bubbles per interval.
17-03-17 19:32:03.048 -07 000000429 INF: LanePump: Xmit /1Q\r
17-03-17 19:32:03.078 -07 000000429 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:32:03.498 -07 000000429 INF: LanePump: Xmit /1Q\r
17-03-17 19:32:03.528 -07 000000429 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:32:03.528 -07 000000429 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:32:03.528 -07 000000429 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:32:03.528 -07 000000429 INF: ===================  ===================
17-03-17 19:32:06.108 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.012614,
17-03-17 19:32:06.698 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 19:32:06.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=363, Total=705. Warn if over 250 bubbles per interval.
17-03-17 19:32:10.108 -07 000000438 INF: WaitCommand(10000) end
17-03-17 19:32:10.108 -07 000000610 INF: =================== Cycle #27, Imaging ===================
17-03-17 19:32:10.108 -07 000000610 INF: Imaging Cycle 27: ScanTilesCommand Cycle 27 time start.
17-03-17 19:32:10.108 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 19:32:10.108 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:32:10.138 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:32:10.138 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 19:32:10.138 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 19:32:10.438 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:32:10.458 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:32:10.458 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:32:10.508 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:32:10.528 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:32:10.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:10.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:10.528 -07 000000438 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 19:32:10.528 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:10.528 -07 000000438 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 19:32:10.538 -07 000000012 INF: FPGA: Recv EXLED1ON 
17-03-17 19:32:10.538 -07 000000438 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:32:10.538 -07 000000438 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 19:32:10.538 -07 000000475 INF: FPGA: Recv EXLED1ADCR 23155
17-03-17 19:32:10.548 -07 000000438 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:10.548 -07 000000438 INF: RedLED: Using Red data: Photodiode ADC 23155 --> 7.4 mW (old method), or 205.2 mW (new method). Difference = 197.8 mW
17-03-17 19:32:10.548 -07 000000438 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 19:32:10.548 -07 000000626 INF: FPGA: Recv EXLED1OFF 
17-03-17 19:32:10.558 -07 000000438 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:10.558 -07 000000438 INF: RedLED: LED was on for 19 ms
17-03-17 19:32:10.558 -07 000000438 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 19:32:10.558 -07 000000438 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 19:32:10.558 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:10.558 -07 000000438 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 19:32:10.558 -07 000000569 INF: FPGA: Recv EXLED2ON 
17-03-17 19:32:10.568 -07 000000438 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:32:10.568 -07 000000438 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:32:10.568 -07 000000623 INF: FPGA: Recv EXLED1ADCR 2102
17-03-17 19:32:10.578 -07 000000438 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:10.578 -07 000000438 INF: GreenLED: Using Green data: Photodiode ADC 2102 --> 0.9 mW (old method), or 182.6 mW (new method). Difference = 181.7 mW
17-03-17 19:32:10.578 -07 000000438 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 19:32:10.578 -07 000000462 INF: FPGA: Recv EXLED2OFF 
17-03-17 19:32:10.588 -07 000000438 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:10.588 -07 000000438 INF: GreenLED: LED was on for 20 ms
17-03-17 19:32:10.588 -07 000000438 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 19:32:10.588 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:32:10.588 -07 000000541 INF: FPGA: Recv EMCUR 
17-03-17 19:32:10.598 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:32:10.598 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 19:32:11.098 -07 000000551 INF: FPGA: Recv EMOUT
17-03-17 19:32:11.098 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 19:32:11.098 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 19:32:11.098 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-17 19:32:11.108 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:32:11.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:32:11.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.127884649701988. ------
17-03-17 19:32:11.108 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:11.108 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17949 mm
17-03-17 19:32:11.108 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:32:11.108 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:32:11.108 -07 000000502 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-17 19:32:11.108 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 39209, sync = True, waitForSettling = False)
17-03-17 19:32:11.108 -07 000000429 INF: Z Motor: Moving to -0.179487 mm, started at -0.127885 mm, distance = -51.60 um
17-03-17 19:32:11.108 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:11.118 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:32:11.118 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:11.118 -07 000000475 INF: FPGA: Recv YRDPOS 154380
17-03-17 19:32:11.128 -07 000000429 INF: FPGA: Xmit ZDACW 39209\n [Z Motor]
17-03-17 19:32:11.128 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:32:11.128 -07 000000502 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:11.128 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:32:11.128 -07 000000502 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 19:32:11.128 -07 000000502 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:32:11.138 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:32:11.138 -07 000000429 INF: FPGA: 'ZDACW 39209' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:32:11.148 -07 000000502 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:32:11.158 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:11.158 -07 000000626 INF: FPGA: Recv ZDACR 39209
17-03-17 19:32:11.168 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:32:11.168 -07 000000429 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 19:32:11.338 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:32:11.338 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:32:11.488 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.026244,
17-03-17 19:32:11.698 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 19:32:11.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:32:12.828 -07 000000429 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 19:32:12.828 -07 000000502 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1700 ms overall
17-03-17 19:32:12.828 -07 000000502 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:32:12.828 -07 000000502 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 19:32:12.828 -07 000000502 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1700 ms, distance = 15.468 mm, average velocity = 9.099 mm/sec
17-03-17 19:32:15.678 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:15.678 -07 000000569 INF: FPGA: Recv YRDPOS 122698
17-03-17 19:32:15.688 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:15.688 -07 000000502 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:15.708 -07 000000502 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:32:15.708 -07 000000502 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 19:32:15.708 -07 000000502 INF: Y Motor: Moved to 59.9111 after 4594 ms
17-03-17 19:32:15.708 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179487 mm (DAC = 39209)
17-03-17 19:32:15.708 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:15.708 -07 000000551 INF: FPGA: Recv ZSGSRD 37238
17-03-17 19:32:15.718 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:32:15.718 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:15.718 -07 000000627 INF: FPGA: Recv ZSGSRD 37229
17-03-17 19:32:15.728 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:15.728 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:15.728 -07 000000512 INF: FPGA: Recv ZSGSRD 37229
17-03-17 19:32:15.738 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:15.738 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:15.738 -07 000000012 INF: FPGA: Recv ZSGSRD 37230
17-03-17 19:32:15.748 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:15.748 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:15.748 -07 000000429 INF: FPGA: Recv ZSGSRD 37225
17-03-17 19:32:15.758 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:15.758 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:15.758 -07 000000623 INF: FPGA: Recv ZSGSRD 37234
17-03-17 19:32:15.768 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:15.768 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:15.768 -07 000000569 INF: FPGA: Recv ZSGSRD 37232
17-03-17 19:32:15.778 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:15.778 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:15.778 -07 000000482 INF: FPGA: Recv ZSGSRD 37229
17-03-17 19:32:15.788 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:15.788 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:15.788 -07 000000627 INF: FPGA: Recv ZSGSRD 37228
17-03-17 19:32:15.798 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:15.798 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:15.798 -07 000000478 INF: FPGA: Recv ZSGSRD 37231
17-03-17 19:32:15.808 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:15.808 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:15.808 -07 000000608 INF: FPGA: Recv ZPIEZORD 33659
17-03-17 19:32:15.818 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:15.818 -07 000000438 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.983 V. Piezo Error = -7.9 V.
17-03-17 19:32:15.818 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37230 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37230 (-178.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37225 (-178.6 uncal um), Max = 37238 (-178.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:32:15.818 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37230, posNoise = 8, negNoise = 5
17-03-17 19:32:15.818 -07 000000438 INF: Z Motor: After move to -0.179487, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:15.818 -07 000000438 INF: Z Motor: Settle wait time = 4597 ms, measure time = 105 ms (allowed 150 ms), total time = 4702 ms
17-03-17 19:32:15.818 -07 000000438 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:32:15.868 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4754 ms
17-03-17 19:32:15.868 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:32:15.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:15.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:15.868 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:15.868 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:15.868 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:32:15.868 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:15.868 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:32:15.868 -07 000000482 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:32:15.898 -07 000000482 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 19:32:15.898 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:32:15.898 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:32:15.898 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:32:15.908 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:32:15.908 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-17 19:32:15.918 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:32:15.958 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:32:16.158 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:32:16.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:32:16.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:32:16.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:32:16.198 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:32:16.198 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 19:32:16.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 19:32:16.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 19:32:16.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:16.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:32:16.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 19:32:16.298 -07 000000462 INF: Image SNR check: start
17-03-17 19:32:16.298 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:16.298 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:16.308 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:32:16.308 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:32:16.308 -07 000000462 INF: Image SNR check: pass  [peak (Max-Min)=65.40]
17-03-17 19:32:16.308 -07 000000462 INF: Autofocus start
17-03-17 19:32:16.308 -07 000000462 INF: MeasureProfile start
17-03-17 19:32:16.318 -07 000000462 INF: MeasureProfile done
17-03-17 19:32:16.318 -07 000000462 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:32:16.318 -07 000000462 INF: Autofocus finished
17-03-17 19:32:16.508 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:32:16.508 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:32:16.508 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.179496770048895. ----------
17-03-17 19:32:16.508 -07 000000610 INF: Cycle	27	Tile	1	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:32:16.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37724, sync = True, waitForSettling = True)
17-03-17 19:32:16.518 -07 000000610 INF: Z Motor: Moving to -0.172689 mm, started at -0.179497 mm, distance = 6.81 um
17-03-17 19:32:16.518 -07 000000610 INF: FPGA: Xmit ZDACW 37724\n [Z Motor]
17-03-17 19:32:16.518 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:32:16.528 -07 000000610 INF: FPGA: 'ZDACW 37724' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:16.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:16.538 -07 000000551 INF: FPGA: Recv ZDACR 37724
17-03-17 19:32:16.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:32:16.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:32:16.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:16.698 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:32:16.698 -07 000000626 INF: FPGA: Recv ZSGSRD 36170
17-03-17 19:32:16.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:32:16.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:16.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:16.708 -07 000000551 INF: FPGA: Recv ZSGSRD 36171
17-03-17 19:32:16.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:16.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:16.718 -07 000000482 INF: FPGA: Recv ZSGSRD 36172
17-03-17 19:32:16.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:16.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:16.728 -07 000000608 INF: FPGA: Recv ZSGSRD 36174
17-03-17 19:32:16.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:16.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:16.738 -07 000000623 INF: FPGA: Recv ZSGSRD 36173
17-03-17 19:32:16.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:16.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:16.748 -07 000000438 INF: FPGA: Recv ZSGSRD 36164
17-03-17 19:32:16.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:16.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:16.758 -07 000000012 INF: FPGA: Recv ZSGSRD 36174
17-03-17 19:32:16.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:16.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:16.768 -07 000000626 INF: FPGA: Recv ZSGSRD 36173
17-03-17 19:32:16.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:16.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:16.778 -07 000000502 INF: FPGA: Recv ZSGSRD 36172
17-03-17 19:32:16.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:16.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:16.788 -07 000000623 INF: FPGA: Recv ZSGSRD 36172
17-03-17 19:32:16.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:16.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:16.798 -07 000000429 INF: FPGA: Recv ZPIEZORD 32250
17-03-17 19:32:16.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:16.808 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.756 V. Piezo Error = -8.7 V.
17-03-17 19:32:16.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36172 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36172 (-171.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36164 (-171.8 uncal um), Max = 36174 (-171.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:32:16.808 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36172, posNoise = 2, negNoise = 8
17-03-17 19:32:16.808 -07 000000610 INF: Z Motor: After move to -0.172689, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:16.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 19:32:16.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:16.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:16.808 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:16.808 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:16.808 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:32:16.808 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:32:16.808 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:32:16.808 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:16.808 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:32:16.808 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:32:16.808 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:32:16.808 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:32:16.818 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:32:16.818 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:32:16.828 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:32:16.828 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:32:16.838 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 19:32:16.838 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:32:16.838 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:32:16.838 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:32:16.848 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.020806,
17-03-17 19:32:16.848 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 19:32:16.848 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 37 ms.
17-03-17 19:32:16.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37900 150\n [Camera]
17-03-17 19:32:17.068 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 19:32:17.468 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:32:17.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:32:17.468 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:17.468 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:17.468 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:32:17.468 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:32:17.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:32:17.468 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:17.468 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:17.468 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:32:17.658 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37900 787
17-03-17 19:32:17.808 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:32:17.868 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:32:17.868 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:32:17.868 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:17.868 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 19:32:17.868 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:32:17.868 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:17.878 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:32:17.878 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:32:17.878 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:32:17.888 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:32:17.998 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:32:17.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:32:17.998 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:17.998 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:17.998 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1059196976, 0x0, 391868352) start.
17-03-17 19:32:18.008 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:32:18.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:32:18.008 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:18.008 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:18.008 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1111494304, 0x0, 418435064) start.
17-03-17 19:32:18.188 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:32:18.198 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:32:18.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37900 150' command took 2 ms to send, 1320 ms to get response, and 1344 ms overall
17-03-17 19:32:18.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:32:18.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.172699953602912. ------
17-03-17 19:32:18.198 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:18.198 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17907 mm
17-03-17 19:32:18.198 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:32:18.198 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:32:18.208 -07 000000502 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 19:32:18.208 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:18.208 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 39118, sync = True, waitForSettling = False)
17-03-17 19:32:18.208 -07 000000429 INF: Z Motor: Moving to -0.179071 mm, started at -0.172700 mm, distance = -6.37 um
17-03-17 19:32:18.208 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:18.208 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 19:32:18.208 -07 000000627 INF: FPGA: Recv YRDPOS 122698
17-03-17 19:32:18.218 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:18.218 -07 000000502 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:18.218 -07 000000502 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:32:18.218 -07 000000502 INF: Y Motor: Moving 1330 steps2
17-03-17 19:32:18.218 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:32:18.228 -07 000000429 INF: FPGA: Xmit ZDACW 39118\n [Z Motor]
17-03-17 19:32:18.228 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:32:18.238 -07 000000429 INF: FPGA: 'ZDACW 39118' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:32:18.238 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:32:18.248 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:18.248 -07 000000482 INF: FPGA: Recv ZDACR 39118
17-03-17 19:32:18.258 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:32:18.258 -07 000000429 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 19:32:18.408 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1059196976, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 19:32:18.408 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:32:18.408 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:18.408 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1111494304, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 19:32:18.408 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:32:18.408 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:18.418 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:32:18.418 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 19:32:18.418 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:32:18.418 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 19:32:18.418 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:32:18.428 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 19:32:18.608 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 19:32:18.608 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:32:18.638 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:18.638 -07 000000626 INF: FPGA: Recv YRDPOS 124381
17-03-17 19:32:18.648 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:32:18.648 -07 000000502 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:18.648 -07 000000502 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 19:32:18.648 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.831 mm, average velocity = 2.089 mm/sec
17-03-17 19:32:19.598 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:19.598 -07 000000623 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:32:19.608 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:19.608 -07 000000502 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:19.628 -07 000000502 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:32:19.628 -07 000000502 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:32:19.628 -07 000000502 INF: Y Motor: Moved to 60.7334 after 1421 ms (table move)
17-03-17 19:32:19.628 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179071 mm (DAC = 39118)
17-03-17 19:32:19.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:19.628 -07 000000569 INF: FPGA: Recv ZSGSRD 37165
17-03-17 19:32:19.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:32:19.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:19.638 -07 000000482 INF: FPGA: Recv ZSGSRD 37162
17-03-17 19:32:19.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:19.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:19.648 -07 000000541 INF: FPGA: Recv ZSGSRD 37162
17-03-17 19:32:19.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:19.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:19.658 -07 000000627 INF: FPGA: Recv ZSGSRD 37165
17-03-17 19:32:19.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:19.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:19.668 -07 000000502 INF: FPGA: Recv ZSGSRD 37170
17-03-17 19:32:19.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:19.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:19.678 -07 000000593 INF: FPGA: Recv ZSGSRD 37172
17-03-17 19:32:19.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:19.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:19.688 -07 000000012 INF: FPGA: Recv ZSGSRD 37163
17-03-17 19:32:19.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:19.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:19.698 -07 000000626 INF: FPGA: Recv ZSGSRD 37160
17-03-17 19:32:19.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:19.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:19.708 -07 000000541 INF: FPGA: Recv ZSGSRD 37162
17-03-17 19:32:19.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:19.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:19.718 -07 000000429 INF: FPGA: Recv ZSGSRD 37161
17-03-17 19:32:19.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:19.728 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:19.728 -07 000000502 INF: FPGA: Recv ZPIEZORD 33548
17-03-17 19:32:19.738 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:19.738 -07 000000431 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.969 V. Piezo Error = -8.0 V.
17-03-17 19:32:19.738 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.1 um, Read 10 ADC samples: Avg = 37164 (-178.2 uncal um), Error = 0.9 uncal um, Median = 37162 (-178.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37160 (-178.2 uncal um), Max = 37172 (-178.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:32:19.738 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37164, posNoise = 8, negNoise = 4
17-03-17 19:32:19.738 -07 000000431 INF: Z Motor: After move to -0.179071, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:19.738 -07 000000431 INF: Z Motor: Settle wait time = 1423 ms, measure time = 106 ms (allowed 150 ms), total time = 1529 ms
17-03-17 19:32:19.738 -07 000000431 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:32:19.788 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 19:32:19.788 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:32:19.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:19.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:19.788 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:19.788 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:19.788 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:32:19.788 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:19.788 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:32:19.788 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:32:19.798 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:32:19.798 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:32:19.808 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:32:19.808 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:32:19.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:32:19.858 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:32:20.058 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:32:20.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:32:20.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:32:20.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-17 19:32:20.098 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:32:20.098 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 19:32:20.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 19:32:20.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:32:20.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:20.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:32:20.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:32:20.198 -07 000000626 INF: Autofocus start
17-03-17 19:32:20.198 -07 000000626 INF: MeasureProfile start
17-03-17 19:32:20.198 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:20.208 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:20.208 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 19:32:20.208 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:32:20.208 -07 000000626 INF: MeasureProfile done
17-03-17 19:32:20.208 -07 000000626 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:32:20.208 -07 000000626 INF: Autofocus finished
17-03-17 19:32:20.408 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:32:20.408 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:32:20.408 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.179072772047539. ----------
17-03-17 19:32:20.418 -07 000000610 INF: Cycle	27	Tile	2	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:32:20.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37615, sync = True, waitForSettling = True)
17-03-17 19:32:20.418 -07 000000610 INF: Z Motor: Moving to -0.172190 mm, started at -0.179073 mm, distance = 6.88 um
17-03-17 19:32:20.418 -07 000000610 INF: FPGA: Xmit ZDACW 37615\n [Z Motor]
17-03-17 19:32:20.418 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:32:20.428 -07 000000610 INF: FPGA: 'ZDACW 37615' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:32:20.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:20.428 -07 000000512 INF: FPGA: Recv ZDACR 37615
17-03-17 19:32:20.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:20.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:32:20.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:20.588 -07 000000012 INF: FPGA: Recv ZSGSRD 36092
17-03-17 19:32:20.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:20.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:20.598 -07 000000626 INF: FPGA: Recv ZSGSRD 36093
17-03-17 19:32:20.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:20.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:20.608 -07 000000462 INF: FPGA: Recv ZSGSRD 36096
17-03-17 19:32:20.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:20.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:20.618 -07 000000431 INF: FPGA: Recv ZSGSRD 36094
17-03-17 19:32:20.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:20.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:20.628 -07 000000429 INF: FPGA: Recv ZSGSRD 36092
17-03-17 19:32:20.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:20.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:20.638 -07 000000012 INF: FPGA: Recv ZSGSRD 36099
17-03-17 19:32:20.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:20.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:20.648 -07 000000502 INF: FPGA: Recv ZSGSRD 36098
17-03-17 19:32:20.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:20.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:20.658 -07 000000623 INF: FPGA: Recv ZSGSRD 36091
17-03-17 19:32:20.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:20.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:20.668 -07 000000431 INF: FPGA: Recv ZSGSRD 36092
17-03-17 19:32:20.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:20.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:20.678 -07 000000627 INF: FPGA: Recv ZSGSRD 36093
17-03-17 19:32:20.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:20.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:20.688 -07 000000608 INF: FPGA: Recv ZPIEZORD 32114
17-03-17 19:32:20.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:20.698 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.740 V. Piezo Error = -8.8 V.
17-03-17 19:32:20.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36094 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36093 (-171.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36091 (-171.3 uncal um), Max = 36099 (-171.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:32:20.698 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36094, posNoise = 5, negNoise = 3
17-03-17 19:32:20.698 -07 000000610 INF: Z Motor: After move to -0.172190, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:20.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:32:20.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:20.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:20.698 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:20.698 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:20.698 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:32:20.698 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:20.698 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:32:20.698 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:32:20.698 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:32:20.698 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:32:20.698 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:32:20.698 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:32:20.708 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:32:20.708 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:32:20.708 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:32:20.708 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:32:20.718 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:32:20.718 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:32:20.718 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:32:20.718 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:32:20.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37792 150\n [Camera]
17-03-17 19:32:20.928 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:32:21.328 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:32:21.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:32:21.328 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:21.328 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:21.328 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:32:21.328 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:32:21.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:32:21.328 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:21.328 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:21.328 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:32:21.518 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37792 787
17-03-17 19:32:21.668 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:32:21.698 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:32:21.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:32:21.728 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:32:21.728 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:32:21.728 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:21.728 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:32:21.728 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:32:21.728 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:21.738 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:32:21.738 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:32:21.738 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:21.748 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:32:21.858 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:32:21.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:32:21.858 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:21.858 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:21.858 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:32:21.868 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:32:21.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:32:21.868 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:21.868 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:21.868 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:32:22.048 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:32:22.058 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:32:22.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37792 150' command took 2 ms to send, 1320 ms to get response, and 1329 ms overall
17-03-17 19:32:22.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:32:22.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.172198865055855. ------
17-03-17 19:32:22.058 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:22.058 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17884 mm
17-03-17 19:32:22.058 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:32:22.068 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:32:22.068 -07 000000512 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 19:32:22.068 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:22.068 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 39069, sync = True, waitForSettling = False)
17-03-17 19:32:22.068 -07 000000478 INF: Z Motor: Moving to -0.178846 mm, started at -0.172199 mm, distance = -6.65 um
17-03-17 19:32:22.068 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:22.068 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 19:32:22.068 -07 000000626 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:32:22.078 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:22.078 -07 000000512 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:22.078 -07 000000512 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:32:22.078 -07 000000512 INF: Y Motor: Moving 1343 steps-20
17-03-17 19:32:22.078 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:32:22.088 -07 000000478 INF: FPGA: Xmit ZDACW 39069\n [Z Motor]
17-03-17 19:32:22.088 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:32:22.098 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:32:22.098 -07 000000478 INF: FPGA: 'ZDACW 39069' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:32:22.108 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:22.108 -07 000000012 INF: FPGA: Recv ZDACR 39069
17-03-17 19:32:22.118 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:32:22.118 -07 000000478 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 19:32:22.228 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.011254,
17-03-17 19:32:22.258 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 19:32:22.258 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:32:22.258 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:22.258 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:32:22.258 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:32:22.258 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:22.258 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:22.268 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:32:22.268 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:32:22.268 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:32:22.278 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:32:22.278 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 19:32:22.468 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:32:22.468 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:32:22.508 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:22.508 -07 000000623 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:32:22.518 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:32:22.518 -07 000000512 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:22.518 -07 000000512 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:32:22.518 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 19:32:23.468 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:23.468 -07 000000627 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:32:23.478 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:23.478 -07 000000512 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:23.498 -07 000000512 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:32:23.498 -07 000000512 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:32:23.498 -07 000000512 INF: Y Motor: Moved to 61.5640 after 1432 ms (table move)
17-03-17 19:32:23.498 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178846 mm (DAC = 39069)
17-03-17 19:32:23.498 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:23.498 -07 000000438 INF: FPGA: Recv ZSGSRD 37127
17-03-17 19:32:23.508 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:32:23.508 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:23.508 -07 000000551 INF: FPGA: Recv ZSGSRD 37121
17-03-17 19:32:23.518 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:23.518 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:23.518 -07 000000478 INF: FPGA: Recv ZSGSRD 37126
17-03-17 19:32:23.528 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:23.528 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:23.528 -07 000000429 INF: FPGA: Recv ZSGSRD 37129
17-03-17 19:32:23.538 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:23.538 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:23.538 -07 000000012 INF: FPGA: Recv ZSGSRD 37133
17-03-17 19:32:23.548 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:23.548 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:23.548 -07 000000431 INF: FPGA: Recv ZSGSRD 37135
17-03-17 19:32:23.558 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:23.558 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:23.558 -07 000000593 INF: FPGA: Recv ZSGSRD 37133
17-03-17 19:32:23.568 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:23.568 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:23.568 -07 000000429 INF: FPGA: Recv ZSGSRD 37127
17-03-17 19:32:23.578 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:23.578 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:23.578 -07 000000569 INF: FPGA: Recv ZSGSRD 37127
17-03-17 19:32:23.588 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:23.588 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:23.588 -07 000000541 INF: FPGA: Recv ZSGSRD 37128
17-03-17 19:32:23.598 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:23.598 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:23.598 -07 000000512 INF: FPGA: Recv ZPIEZORD 33576
17-03-17 19:32:23.608 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:23.608 -07 000000475 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.962 V. Piezo Error = -7.9 V.
17-03-17 19:32:23.608 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37129 (-178.0 uncal um), Error = 0.9 uncal um, Median = 37128 (-177.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37121 (-177.9 uncal um), Max = 37135 (-178.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:32:23.608 -07 000000475 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37129, posNoise = 6, negNoise = 8
17-03-17 19:32:23.608 -07 000000475 INF: Z Motor: After move to -0.178846, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:23.608 -07 000000475 INF: Z Motor: Settle wait time = 1434 ms, measure time = 105 ms (allowed 150 ms), total time = 1539 ms
17-03-17 19:32:23.608 -07 000000475 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:32:23.658 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 19:32:23.658 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:32:23.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:23.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:23.668 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:23.668 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:23.668 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:32:23.668 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:23.678 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:32:23.678 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:32:23.678 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:32:23.678 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:32:23.688 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:32:23.688 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:32:23.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:32:23.738 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:32:23.938 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:32:23.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:32:23.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:32:23.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 19:32:23.978 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:32:23.978 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:32:23.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 19:32:24.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 19:32:24.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:24.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:32:24.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:32:24.078 -07 000000569 INF: Autofocus start
17-03-17 19:32:24.078 -07 000000569 INF: MeasureProfile start
17-03-17 19:32:24.078 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:24.078 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:24.088 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:32:24.088 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:32:24.088 -07 000000569 INF: MeasureProfile done
17-03-17 19:32:24.088 -07 000000569 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:32:24.088 -07 000000569 INF: Autofocus finished
17-03-17 19:32:24.288 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:32:24.288 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:32:24.288 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178847924622578. ----------
17-03-17 19:32:24.288 -07 000000610 INF: Cycle	27	Tile	3	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:32:24.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37584, sync = True, waitForSettling = True)
17-03-17 19:32:24.298 -07 000000610 INF: Z Motor: Moving to -0.172049 mm, started at -0.178848 mm, distance = 6.80 um
17-03-17 19:32:24.298 -07 000000610 INF: FPGA: Xmit ZDACW 37584\n [Z Motor]
17-03-17 19:32:24.298 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:32:24.308 -07 000000610 INF: FPGA: 'ZDACW 37584' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:24.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:24.308 -07 000000438 INF: FPGA: Recv ZDACR 37584
17-03-17 19:32:24.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:24.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:32:24.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:24.468 -07 000000626 INF: FPGA: Recv ZSGSRD 36074
17-03-17 19:32:24.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:24.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:24.478 -07 000000551 INF: FPGA: Recv ZSGSRD 36072
17-03-17 19:32:24.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:24.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:24.488 -07 000000431 INF: FPGA: Recv ZSGSRD 36075
17-03-17 19:32:24.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:24.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:24.498 -07 000000012 INF: FPGA: Recv ZSGSRD 36072
17-03-17 19:32:24.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:24.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:24.508 -07 000000569 INF: FPGA: Recv ZSGSRD 36068
17-03-17 19:32:24.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:24.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:24.518 -07 000000593 INF: FPGA: Recv ZSGSRD 36080
17-03-17 19:32:24.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:24.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:24.528 -07 000000482 INF: FPGA: Recv ZSGSRD 36070
17-03-17 19:32:24.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:24.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:24.538 -07 000000431 INF: FPGA: Recv ZSGSRD 36063
17-03-17 19:32:24.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:24.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:24.548 -07 000000502 INF: FPGA: Recv ZSGSRD 36079
17-03-17 19:32:24.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:24.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:24.558 -07 000000569 INF: FPGA: Recv ZSGSRD 36077
17-03-17 19:32:24.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:24.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:24.568 -07 000000462 INF: FPGA: Recv ZPIEZORD 32133
17-03-17 19:32:24.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:24.578 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.735 V. Piezo Error = -8.7 V.
17-03-17 19:32:24.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36073 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36073 (-171.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36063 (-171.1 uncal um), Max = 36080 (-171.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:32:24.578 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36073, posNoise = 7, negNoise = 10
17-03-17 19:32:24.578 -07 000000610 INF: Z Motor: After move to -0.172049, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:24.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:32:24.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:24.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:24.578 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:24.578 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:24.578 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:32:24.578 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:32:24.578 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:24.578 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:32:24.578 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:32:24.578 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:32:24.578 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:32:24.578 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:32:24.578 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:32:24.578 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:32:24.578 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:32:24.578 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:32:24.588 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:32:24.588 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:32:24.598 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:32:24.598 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:32:24.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37760 150\n [Camera]
17-03-17 19:32:24.798 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:32:25.198 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:32:25.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:32:25.198 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:25.198 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:25.198 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 19:32:25.198 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:32:25.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:32:25.198 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:25.198 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:25.208 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 19:32:25.388 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37760 787
17-03-17 19:32:25.538 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:32:25.578 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:32:25.578 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:32:25.578 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:25.578 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:32:25.578 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:32:25.578 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:25.588 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:32:25.588 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:32:25.588 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:32:25.588 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:32:25.738 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:32:25.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:32:25.738 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:25.738 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:25.738 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:32:25.738 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:32:25.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:32:25.738 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:25.738 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:25.738 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 19:32:25.928 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:32:25.928 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:32:25.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37760 150' command took 2 ms to send, 1323 ms to get response, and 1330 ms overall
17-03-17 19:32:25.928 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:32:25.928 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.172063956600878. ------
17-03-17 19:32:25.938 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:25.938 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17828 mm
17-03-17 19:32:25.938 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:32:25.938 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:25.938 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:32:25.938 -07 000000478 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 19:32:25.938 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38945, sync = True, waitForSettling = False)
17-03-17 19:32:25.938 -07 000000569 INF: Z Motor: Moving to -0.178279 mm, started at -0.172064 mm, distance = -6.21 um
17-03-17 19:32:25.948 -07 000000569 INF: FPGA: Xmit ZDACW 38945\n [Z Motor]
17-03-17 19:32:25.948 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:25.948 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:32:25.958 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:25.958 -07 000000569 INF: FPGA: 'ZDACW 38945' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:32:25.958 -07 000000429 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:32:25.968 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:32:25.968 -07 000000478 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:25.968 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:32:25.968 -07 000000478 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:32:25.968 -07 000000478 INF: Y Motor: Moving 1341 steps-18
17-03-17 19:32:25.978 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:25.978 -07 000000541 INF: FPGA: Recv ZDACR 38945
17-03-17 19:32:25.988 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:32:25.988 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:32:25.988 -07 000000569 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 19:32:26.138 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:32:26.138 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:32:26.138 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:26.138 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:32:26.138 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:32:26.138 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:26.138 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:26.148 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:32:26.148 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 19:32:26.148 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:32:26.168 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:32:26.168 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 19:32:26.358 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 19:32:26.358 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:32:26.398 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:26.398 -07 000000475 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:32:26.408 -07 000000478 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:32:26.408 -07 000000478 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:26.408 -07 000000478 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:32:26.408 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-17 19:32:26.698 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:32:26.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:32:27.358 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:27.358 -07 000000431 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:32:27.368 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:27.368 -07 000000478 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:27.388 -07 000000478 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:32:27.388 -07 000000478 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:32:27.388 -07 000000478 INF: Y Motor: Moved to 62.3955 after 1446 ms (table move)
17-03-17 19:32:27.388 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178279 mm (DAC = 38945)
17-03-17 19:32:27.388 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:27.388 -07 000000429 INF: FPGA: Recv ZSGSRD 37047
17-03-17 19:32:27.398 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:32:27.398 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:27.398 -07 000000626 INF: FPGA: Recv ZSGSRD 37040
17-03-17 19:32:27.408 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:27.408 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:27.408 -07 000000429 INF: FPGA: Recv ZSGSRD 37037
17-03-17 19:32:27.418 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:27.418 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:27.418 -07 000000512 INF: FPGA: Recv ZSGSRD 37043
17-03-17 19:32:27.428 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:27.428 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:27.428 -07 000000551 INF: FPGA: Recv ZSGSRD 37049
17-03-17 19:32:27.438 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:27.438 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:27.438 -07 000000431 INF: FPGA: Recv ZSGSRD 37044
17-03-17 19:32:27.448 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:27.448 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:27.448 -07 000000541 INF: FPGA: Recv ZSGSRD 37038
17-03-17 19:32:27.458 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:27.458 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:27.458 -07 000000502 INF: FPGA: Recv ZSGSRD 37036
17-03-17 19:32:27.468 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:27.468 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:27.468 -07 000000478 INF: FPGA: Recv ZSGSRD 37033
17-03-17 19:32:27.478 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:27.478 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:27.478 -07 000000012 INF: FPGA: Recv ZSGSRD 37038
17-03-17 19:32:27.488 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:27.488 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:27.488 -07 000000429 INF: FPGA: Recv ZPIEZORD 33396
17-03-17 19:32:27.498 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:27.498 -07 000000627 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.943 V. Piezo Error = -8.1 V.
17-03-17 19:32:27.498 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.3 um, Read 10 ADC samples: Avg = 37040 (-177.4 uncal um), Error = 0.9 uncal um, Median = 37039 (-177.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 37033 (-177.3 uncal um), Max = 37049 (-177.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:32:27.498 -07 000000627 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37040, posNoise = 9, negNoise = 7
17-03-17 19:32:27.498 -07 000000627 INF: Z Motor: After move to -0.178279, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:27.498 -07 000000627 INF: Z Motor: Settle wait time = 1449 ms, measure time = 107 ms (allowed 150 ms), total time = 1556 ms
17-03-17 19:32:27.498 -07 000000627 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:32:27.548 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 19:32:27.548 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:32:27.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:27.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:27.548 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:27.548 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:27.548 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:32:27.548 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:27.548 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:32:27.548 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:32:27.558 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:32:27.558 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:32:27.568 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:32:27.568 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:32:27.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:32:27.598 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.009895,
17-03-17 19:32:27.618 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:32:27.818 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:32:27.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:32:27.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:32:27.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 19:32:27.858 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:32:27.858 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 19:32:27.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 19:32:27.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 19:32:27.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:27.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:32:27.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 19:32:27.958 -07 000000626 INF: Autofocus start
17-03-17 19:32:27.958 -07 000000626 INF: MeasureProfile start
17-03-17 19:32:27.968 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:27.968 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:27.968 -07 000000626 INF: MeasureProfile done
17-03-17 19:32:27.968 -07 000000626 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:32:27.968 -07 000000626 INF: Autofocus finished
17-03-17 19:32:27.978 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:32:27.978 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:32:28.178 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:32:28.178 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:32:28.178 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.178276169741961. ----------
17-03-17 19:32:28.188 -07 000000610 INF: Cycle	27	Tile	4	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:32:28.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37442, sync = True, waitForSettling = True)
17-03-17 19:32:28.188 -07 000000610 INF: Z Motor: Moving to -0.171398 mm, started at -0.178276 mm, distance = 6.88 um
17-03-17 19:32:28.188 -07 000000610 INF: FPGA: Xmit ZDACW 37442\n [Z Motor]
17-03-17 19:32:28.188 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:32:28.198 -07 000000610 INF: FPGA: 'ZDACW 37442' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:32:28.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:28.198 -07 000000429 INF: FPGA: Recv ZDACR 37442
17-03-17 19:32:28.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:28.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:32:28.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:28.358 -07 000000502 INF: FPGA: Recv ZSGSRD 35974
17-03-17 19:32:28.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:28.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:28.368 -07 000000462 INF: FPGA: Recv ZSGSRD 35972
17-03-17 19:32:28.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:28.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:28.378 -07 000000626 INF: FPGA: Recv ZSGSRD 35973
17-03-17 19:32:28.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:28.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:28.388 -07 000000478 INF: FPGA: Recv ZSGSRD 35965
17-03-17 19:32:28.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:28.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:28.398 -07 000000438 INF: FPGA: Recv ZSGSRD 35976
17-03-17 19:32:28.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:28.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:28.408 -07 000000623 INF: FPGA: Recv ZSGSRD 35971
17-03-17 19:32:28.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:28.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:28.418 -07 000000551 INF: FPGA: Recv ZSGSRD 35976
17-03-17 19:32:28.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:28.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:28.428 -07 000000012 INF: FPGA: Recv ZSGSRD 35971
17-03-17 19:32:28.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:28.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:28.438 -07 000000482 INF: FPGA: Recv ZSGSRD 35968
17-03-17 19:32:28.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:28.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:28.448 -07 000000593 INF: FPGA: Recv ZSGSRD 35970
17-03-17 19:32:28.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:28.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:28.458 -07 000000431 INF: FPGA: Recv ZPIEZORD 31983
17-03-17 19:32:28.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:28.468 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.713 V. Piezo Error = -8.8 V.
17-03-17 19:32:28.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35972 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35972 (-170.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35965 (-170.5 uncal um), Max = 35976 (-170.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:32:28.468 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35972, posNoise = 4, negNoise = 7
17-03-17 19:32:28.468 -07 000000610 INF: Z Motor: After move to -0.171398, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:28.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:32:28.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:28.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:28.468 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:28.468 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:28.468 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:32:28.468 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:28.468 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:32:28.468 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:32:28.468 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:32:28.468 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:32:28.468 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:32:28.468 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:32:28.478 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:32:28.478 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:32:28.478 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:32:28.478 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:32:28.488 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:32:28.488 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:32:28.488 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:32:28.488 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:32:28.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37619 150\n [Camera]
17-03-17 19:32:28.688 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:32:29.088 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:32:29.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:32:29.088 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:29.088 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:29.088 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 19:32:29.098 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:32:29.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:32:29.098 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:29.098 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:29.098 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 19:32:29.278 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37619 787
17-03-17 19:32:29.428 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:32:29.468 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:32:29.468 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:32:29.588 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:29.588 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 501 ms.
17-03-17 19:32:29.598 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 19:32:29.598 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:29.598 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:32:29.598 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:32:29.598 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-17 19:32:29.608 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 19:32:29.628 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:32:29.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:32:29.628 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:29.628 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:32:29.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:32:29.628 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:29.638 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:29.638 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:32:29.638 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:29.638 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:32:29.818 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:32:29.818 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:32:29.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37619 150' command took 2 ms to send, 1324 ms to get response, and 1330 ms overall
17-03-17 19:32:29.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:32:29.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.17141511117456. ------
17-03-17 19:32:29.828 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:29.828 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17764 mm
17-03-17 19:32:29.828 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:32:29.828 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:29.828 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:32:29.828 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38806, sync = True, waitForSettling = False)
17-03-17 19:32:29.828 -07 000000475 INF: Z Motor: Moving to -0.177642 mm, started at -0.171415 mm, distance = -6.23 um
17-03-17 19:32:29.828 -07 000000012 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 19:32:29.838 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:32:29.838 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:29.838 -07 000000626 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:32:29.848 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:32:29.848 -07 000000012 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:29.848 -07 000000012 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:32:29.848 -07 000000012 INF: Y Motor: Moving 1339 steps-15
17-03-17 19:32:29.848 -07 000000475 INF: FPGA: Xmit ZDACW 38806\n [Z Motor]
17-03-17 19:32:29.848 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:32:29.858 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:32:29.858 -07 000000475 INF: FPGA: 'ZDACW 38806' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:32:29.868 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:32:29.878 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:29.878 -07 000000627 INF: FPGA: Recv ZDACR 38806
17-03-17 19:32:29.888 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:32:29.888 -07 000000475 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 19:32:30.018 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:32:30.018 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:32:30.018 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:30.018 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:30.018 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:32:30.018 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:32:30.018 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:30.028 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:30.028 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:32:30.028 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:32:30.058 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:32:30.058 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:32:30.238 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 19:32:30.238 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 19:32:30.278 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:30.278 -07 000000478 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:32:30.288 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:32:30.288 -07 000000012 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:30.288 -07 000000012 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:32:30.288 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.837 mm, average velocity = 2.098 mm/sec
17-03-17 19:32:31.238 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:31.238 -07 000000569 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:32:31.248 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:31.248 -07 000000012 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:31.268 -07 000000012 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:32:31.268 -07 000000012 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:32:31.268 -07 000000012 INF: Y Motor: Moved to 63.2241 after 1438 ms (table move)
17-03-17 19:32:31.268 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177642 mm (DAC = 38806)
17-03-17 19:32:31.268 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:31.278 -07 000000541 INF: FPGA: Recv ZSGSRD 36950
17-03-17 19:32:31.278 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:32:31.278 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:31.278 -07 000000569 INF: FPGA: Recv ZSGSRD 36942
17-03-17 19:32:31.288 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:32:31.288 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:31.288 -07 000000478 INF: FPGA: Recv ZSGSRD 36947
17-03-17 19:32:31.298 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:31.298 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:31.298 -07 000000012 INF: FPGA: Recv ZSGSRD 36945
17-03-17 19:32:31.308 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:31.308 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:31.308 -07 000000551 INF: FPGA: Recv ZSGSRD 36942
17-03-17 19:32:31.318 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:31.318 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:31.318 -07 000000569 INF: FPGA: Recv ZSGSRD 36942
17-03-17 19:32:31.328 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:31.328 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:31.328 -07 000000502 INF: FPGA: Recv ZSGSRD 36938
17-03-17 19:32:31.338 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:31.338 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:31.338 -07 000000541 INF: FPGA: Recv ZSGSRD 36936
17-03-17 19:32:31.348 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:31.348 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:31.348 -07 000000593 INF: FPGA: Recv ZSGSRD 36934
17-03-17 19:32:31.358 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:31.358 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:31.358 -07 000000502 INF: FPGA: Recv ZSGSRD 36947
17-03-17 19:32:31.368 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:31.368 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:31.368 -07 000000608 INF: FPGA: Recv ZPIEZORD 33284
17-03-17 19:32:31.378 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:31.378 -07 000000623 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.921 V. Piezo Error = -8.1 V.
17-03-17 19:32:31.378 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36942 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36942 (-176.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36934 (-176.7 uncal um), Max = 36950 (-176.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:32:31.378 -07 000000623 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36942, posNoise = 8, negNoise = 8
17-03-17 19:32:31.378 -07 000000623 INF: Z Motor: After move to -0.177642, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:31.378 -07 000000623 INF: Z Motor: Settle wait time = 1441 ms, measure time = 103 ms (allowed 150 ms), total time = 1544 ms
17-03-17 19:32:31.378 -07 000000623 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:32:31.428 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 19:32:31.428 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:32:31.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:31.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:31.428 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:31.428 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:31.428 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:32:31.428 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:31.428 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:32:31.428 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:32:31.438 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:32:31.438 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:32:31.448 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:32:31.448 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:32:31.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:32:31.498 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:32:31.698 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:32:31.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:32:31.698 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:32:31.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:32:31.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:32:31.738 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:32:31.738 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:32:31.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 19:32:31.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 19:32:31.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:31.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:32:31.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 19:32:31.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:32:31.838 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:31.838 -07 000000475 INF: Autofocus start
17-03-17 19:32:31.838 -07 000000475 INF: MeasureProfile start
17-03-17 19:32:31.838 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:31.848 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:32:31.848 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:32:31.848 -07 000000475 INF: MeasureProfile done
17-03-17 19:32:31.848 -07 000000475 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:32:31.848 -07 000000475 INF: Autofocus finished
17-03-17 19:32:32.048 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:32:32.048 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 19:32:32.048 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.177646596952068. ----------
17-03-17 19:32:32.048 -07 000000610 INF: Cycle	27	Tile	5	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:32:32.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37339, sync = True, waitForSettling = True)
17-03-17 19:32:32.058 -07 000000610 INF: Z Motor: Moving to -0.170927 mm, started at -0.177647 mm, distance = 6.72 um
17-03-17 19:32:32.058 -07 000000610 INF: FPGA: Xmit ZDACW 37339\n [Z Motor]
17-03-17 19:32:32.058 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:32:32.068 -07 000000610 INF: FPGA: 'ZDACW 37339' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:32.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:32.068 -07 000000478 INF: FPGA: Recv ZDACR 37339
17-03-17 19:32:32.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:32.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:32:32.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:32.228 -07 000000462 INF: FPGA: Recv ZSGSRD 35897
17-03-17 19:32:32.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:32.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:32.238 -07 000000475 INF: FPGA: Recv ZSGSRD 35902
17-03-17 19:32:32.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:32.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:32.248 -07 000000431 INF: FPGA: Recv ZSGSRD 35900
17-03-17 19:32:32.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:32.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:32.258 -07 000000482 INF: FPGA: Recv ZSGSRD 35891
17-03-17 19:32:32.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:32.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:32.268 -07 000000478 INF: FPGA: Recv ZSGSRD 35895
17-03-17 19:32:32.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:32.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:32.278 -07 000000462 INF: FPGA: Recv ZSGSRD 35902
17-03-17 19:32:32.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:32.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:32.288 -07 000000551 INF: FPGA: Recv ZSGSRD 35897
17-03-17 19:32:32.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:32.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:32.298 -07 000000438 INF: FPGA: Recv ZSGSRD 35899
17-03-17 19:32:32.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:32.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:32.308 -07 000000502 INF: FPGA: Recv ZSGSRD 35890
17-03-17 19:32:32.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:32.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:32.318 -07 000000512 INF: FPGA: Recv ZSGSRD 35900
17-03-17 19:32:32.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:32.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:32.328 -07 000000623 INF: FPGA: Recv ZPIEZORD 31902
17-03-17 19:32:32.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:32:32.338 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.698 V. Piezo Error = -8.8 V.
17-03-17 19:32:32.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35897 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35898 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35890 (-170.0 uncal um), Max = 35902 (-170.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:32:32.338 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35897, posNoise = 5, negNoise = 7
17-03-17 19:32:32.338 -07 000000610 INF: Z Motor: After move to -0.170927, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:32.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:32:32.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:32.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:32.338 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:32.338 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:32:32.338 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:32.338 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:32.338 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:32:32.338 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:32:32.338 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:32:32.338 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:32:32.338 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:32:32.338 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:32:32.338 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:32:32.338 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:32:32.348 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:32:32.348 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:32:32.358 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 19:32:32.358 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:32:32.358 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 19:32:32.358 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:32:32.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37515 150\n [Camera]
17-03-17 19:32:32.558 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:32:32.968 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.993549,
17-03-17 19:32:32.968 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:32:32.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:32:32.968 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:32.968 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:32:32.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:32:32.968 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:33.098 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:33.098 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:32:33.108 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:33.108 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:32:33.158 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37515 787
17-03-17 19:32:33.308 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:32:33.478 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 19:32:33.478 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 19:32:33.478 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:33.478 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 19:32:33.478 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 19:32:33.478 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:33.478 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:33.478 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 19:32:33.478 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:33.488 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-17 19:32:33.498 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:32:33.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:32:33.498 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:33.508 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:32:33.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:32:33.508 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:33.508 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:33.508 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:32:33.508 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:33.508 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2617114384, 0x0, 418435064) start.
17-03-17 19:32:33.688 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:32:33.688 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:32:33.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37515 150' command took 4 ms to send, 1329 ms to get response, and 1334 ms overall
17-03-17 19:32:33.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:32:33.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170933295263928. ------
17-03-17 19:32:33.698 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:33.698 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17735 mm
17-03-17 19:32:33.698 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:32:33.708 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:33.708 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38743, sync = True, waitForSettling = False)
17-03-17 19:32:33.708 -07 000000512 INF: Z Motor: Moving to -0.177354 mm, started at -0.170933 mm, distance = -6.42 um
17-03-17 19:32:33.708 -07 000000512 INF: FPGA: Xmit ZDACW 38743\n [Z Motor]
17-03-17 19:32:33.708 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:32:33.708 -07 000000431 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 19:32:33.708 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:32:33.708 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:32:33.718 -07 000000512 INF: FPGA: 'ZDACW 38743' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:32:33.718 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:32:33.728 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:33.728 -07 000000482 INF: FPGA: Recv YRDPOS 129484
17-03-17 19:32:33.738 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:33.738 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:32:33.738 -07 000000431 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:33.738 -07 000000627 INF: FPGA: Recv ZDACR 38743
17-03-17 19:32:33.738 -07 000000431 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:32:33.738 -07 000000431 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:32:33.748 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:32:33.748 -07 000000512 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 19:32:33.748 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:32:33.898 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2617114384, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:32:33.898 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:32:33.898 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:33.898 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:32:33.898 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:32:33.898 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:33.908 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:32:33.908 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:32:33.908 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:32:33.908 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 19:32:33.918 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:32:33.918 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 213 ms overall
17-03-17 19:32:34.118 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 19:32:34.118 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 19:32:34.158 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:34.158 -07 000000551 INF: FPGA: Recv YRDPOS 131188
17-03-17 19:32:34.168 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:32:34.168 -07 000000431 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:34.168 -07 000000431 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 19:32:34.168 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.838 mm, average velocity = 2.178 mm/sec
17-03-17 19:32:35.118 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:35.118 -07 000000482 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:32:35.128 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:35.128 -07 000000431 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:35.138 -07 000000431 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:32:35.138 -07 000000431 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:32:35.138 -07 000000431 INF: Y Motor: Moved to 64.0571 after 1438 ms (table move)
17-03-17 19:32:35.148 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177354 mm (DAC = 38743)
17-03-17 19:32:35.148 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:35.148 -07 000000462 INF: FPGA: Recv ZSGSRD 36904
17-03-17 19:32:35.158 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:32:35.158 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:35.158 -07 000000593 INF: FPGA: Recv ZSGSRD 36893
17-03-17 19:32:35.168 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:35.168 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:35.168 -07 000000569 INF: FPGA: Recv ZSGSRD 36883
17-03-17 19:32:35.178 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:35.178 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:35.178 -07 000000475 INF: FPGA: Recv ZSGSRD 36891
17-03-17 19:32:35.188 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:35.188 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:35.188 -07 000000478 INF: FPGA: Recv ZSGSRD 36902
17-03-17 19:32:35.198 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:35.198 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:35.198 -07 000000551 INF: FPGA: Recv ZSGSRD 36905
17-03-17 19:32:35.208 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:35.208 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:35.208 -07 000000482 INF: FPGA: Recv ZSGSRD 36899
17-03-17 19:32:35.218 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:35.218 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:35.218 -07 000000502 INF: FPGA: Recv ZSGSRD 36898
17-03-17 19:32:35.228 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:35.228 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:35.228 -07 000000627 INF: FPGA: Recv ZSGSRD 36894
17-03-17 19:32:35.238 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:35.238 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:35.238 -07 000000569 INF: FPGA: Recv ZSGSRD 36902
17-03-17 19:32:35.248 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:35.248 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:35.248 -07 000000482 INF: FPGA: Recv ZPIEZORD 33257
17-03-17 19:32:35.258 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:35.258 -07 000000623 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.912 V. Piezo Error = -8.1 V.
17-03-17 19:32:35.258 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36897 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36898 (-176.5 uncal um), StdDev = 7 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 36883 (-176.4 uncal um), Max = 36905 (-176.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-17 19:32:35.258 -07 000000623 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36897, posNoise = 8, negNoise = 14
17-03-17 19:32:35.258 -07 000000623 INF: Z Motor: After move to -0.177354, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:35.258 -07 000000623 INF: Z Motor: Settle wait time = 1441 ms, measure time = 108 ms (allowed 150 ms), total time = 1549 ms
17-03-17 19:32:35.258 -07 000000623 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:32:35.308 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 19:32:35.308 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:32:35.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:35.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:35.308 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:35.308 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:35.308 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:32:35.308 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:35.318 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:32:35.318 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:32:35.318 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:32:35.318 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:32:35.328 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:32:35.328 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:32:35.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:32:35.378 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:32:35.578 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:32:35.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:32:35.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:32:35.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:32:35.618 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:32:35.618 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:32:35.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:32:35.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:32:35.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:35.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:32:35.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:32:35.718 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:35.718 -07 000000502 INF: Autofocus start
17-03-17 19:32:35.718 -07 000000502 INF: MeasureProfile start
17-03-17 19:32:35.718 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:35.728 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:32:35.728 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:32:35.728 -07 000000502 INF: MeasureProfile done
17-03-17 19:32:35.728 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:32:35.728 -07 000000502 INF: Autofocus finished
17-03-17 19:32:35.928 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:32:35.928 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:32:35.928 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.177357507405689. ----------
17-03-17 19:32:35.928 -07 000000610 INF: Cycle	27	Tile	6	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:32:35.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37258, sync = True, waitForSettling = True)
17-03-17 19:32:35.938 -07 000000610 INF: Z Motor: Moving to -0.170556 mm, started at -0.177358 mm, distance = 6.80 um
17-03-17 19:32:35.938 -07 000000610 INF: FPGA: Xmit ZDACW 37258\n [Z Motor]
17-03-17 19:32:35.938 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:32:35.948 -07 000000610 INF: FPGA: 'ZDACW 37258' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:35.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:35.948 -07 000000626 INF: FPGA: Recv ZDACR 37258
17-03-17 19:32:35.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:35.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:32:36.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:36.108 -07 000000478 INF: FPGA: Recv ZSGSRD 35840
17-03-17 19:32:36.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:36.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:36.118 -07 000000541 INF: FPGA: Recv ZSGSRD 35843
17-03-17 19:32:36.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:36.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:36.128 -07 000000627 INF: FPGA: Recv ZSGSRD 35843
17-03-17 19:32:36.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:36.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:36.138 -07 000000429 INF: FPGA: Recv ZSGSRD 35834
17-03-17 19:32:36.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:36.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:36.148 -07 000000512 INF: FPGA: Recv ZSGSRD 35847
17-03-17 19:32:36.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:36.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:36.158 -07 000000478 INF: FPGA: Recv ZSGSRD 35836
17-03-17 19:32:36.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:36.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:36.168 -07 000000475 INF: FPGA: Recv ZSGSRD 35835
17-03-17 19:32:36.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:36.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:36.178 -07 000000482 INF: FPGA: Recv ZSGSRD 35841
17-03-17 19:32:36.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:36.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:36.188 -07 000000626 INF: FPGA: Recv ZSGSRD 35835
17-03-17 19:32:36.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:36.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:36.198 -07 000000431 INF: FPGA: Recv ZSGSRD 35847
17-03-17 19:32:36.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:36.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:36.208 -07 000000512 INF: FPGA: Recv ZPIEZORD 31830
17-03-17 19:32:36.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:36.218 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.685 V. Piezo Error = -8.9 V.
17-03-17 19:32:36.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35840 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35840 (-169.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35834 (-169.7 uncal um), Max = 35847 (-169.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:32:36.218 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35840, posNoise = 7, negNoise = 6
17-03-17 19:32:36.218 -07 000000610 INF: Z Motor: After move to -0.170556, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:36.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:32:36.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:36.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:36.218 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:36.218 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:36.218 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:32:36.218 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:32:36.218 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:32:36.218 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:36.218 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:32:36.218 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:32:36.218 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:32:36.218 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:32:36.218 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:32:36.228 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:32:36.228 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:32:36.228 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:32:36.228 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:32:36.228 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:32:36.238 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:32:36.238 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:32:36.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37435 150\n [Camera]
17-03-17 19:32:36.438 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:32:36.698 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:32:36.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:32:36.838 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:32:36.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:32:36.838 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:36.848 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:32:36.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:32:36.848 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:36.848 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:36.848 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:32:36.858 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:36.858 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:32:37.038 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37435 787
17-03-17 19:32:37.178 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:32:37.228 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:32:37.228 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:32:37.228 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:37.228 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:37.228 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:32:37.228 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:32:37.228 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:37.238 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:37.238 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:32:37.238 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:32:37.378 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:32:37.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:32:37.378 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:37.378 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:32:37.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:32:37.378 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:37.498 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:37.498 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1059196976, 0x0, 391868352) start.
17-03-17 19:32:37.498 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:37.498 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:32:37.568 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:32:37.568 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:32:37.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37435 150' command took 2 ms to send, 1327 ms to get response, and 1332 ms overall
17-03-17 19:32:37.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:32:37.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.170567115171848. ------
17-03-17 19:32:37.578 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:37.578 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17706 mm
17-03-17 19:32:37.578 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:32:37.578 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:37.578 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:32:37.578 -07 000000608 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 19:32:37.578 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38678, sync = True, waitForSettling = False)
17-03-17 19:32:37.578 -07 000000475 INF: Z Motor: Moving to -0.177057 mm, started at -0.170567 mm, distance = -6.49 um
17-03-17 19:32:37.588 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:32:37.588 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:37.588 -07 000000512 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:32:37.598 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:32:37.598 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:32:37.598 -07 000000608 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:37.598 -07 000000608 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:32:37.598 -07 000000608 INF: Y Motor: Moving 1337 steps-12
17-03-17 19:32:37.608 -07 000000475 INF: FPGA: Xmit ZDACW 38678\n [Z Motor]
17-03-17 19:32:37.608 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:32:37.618 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:32:37.618 -07 000000475 INF: FPGA: 'ZDACW 38678' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:32:37.628 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:37.628 -07 000000429 INF: FPGA: Recv ZDACR 38678
17-03-17 19:32:37.638 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:32:37.638 -07 000000475 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 19:32:37.798 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:32:37.798 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 19:32:37.878 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:32:37.878 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:32:37.878 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:37.878 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1059196976, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:32:37.888 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:32:37.888 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:37.888 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:32:37.888 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:37.888 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-17 19:32:37.888 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 19:32:37.988 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 19:32:37.988 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:32:38.028 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:38.028 -07 000000541 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:32:38.038 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:38.038 -07 000000608 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:38.038 -07 000000608 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:32:38.038 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 19:32:38.468 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.98264,
17-03-17 19:32:38.988 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:38.988 -07 000000478 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:32:38.998 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:38.998 -07 000000608 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:39.018 -07 000000608 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:32:39.018 -07 000000608 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:32:39.018 -07 000000608 INF: Y Motor: Moved to 64.8789 after 1432 ms (table move)
17-03-17 19:32:39.018 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177057 mm (DAC = 38678)
17-03-17 19:32:39.018 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:39.018 -07 000000623 INF: FPGA: Recv ZSGSRD 36849
17-03-17 19:32:39.028 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:32:39.028 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:39.028 -07 000000569 INF: FPGA: Recv ZSGSRD 36847
17-03-17 19:32:39.038 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:39.038 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:39.038 -07 000000462 INF: FPGA: Recv ZSGSRD 36846
17-03-17 19:32:39.048 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:39.048 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:39.048 -07 000000475 INF: FPGA: Recv ZSGSRD 36855
17-03-17 19:32:39.058 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:39.058 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:39.058 -07 000000482 INF: FPGA: Recv ZSGSRD 36852
17-03-17 19:32:39.068 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:39.068 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:39.068 -07 000000429 INF: FPGA: Recv ZSGSRD 36857
17-03-17 19:32:39.078 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:39.078 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:39.078 -07 000000623 INF: FPGA: Recv ZSGSRD 36853
17-03-17 19:32:39.088 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:39.088 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:39.088 -07 000000541 INF: FPGA: Recv ZSGSRD 36847
17-03-17 19:32:39.098 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:39.098 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:39.098 -07 000000482 INF: FPGA: Recv ZSGSRD 36850
17-03-17 19:32:39.108 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:39.108 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:39.108 -07 000000593 INF: FPGA: Recv ZSGSRD 36848
17-03-17 19:32:39.118 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:39.118 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:39.118 -07 000000429 INF: FPGA: Recv ZPIEZORD 33169
17-03-17 19:32:39.128 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:39.128 -07 000000551 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.902 V. Piezo Error = -8.2 V.
17-03-17 19:32:39.128 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36850 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36850 (-176.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36846 (-176.1 uncal um), Max = 36857 (-176.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:32:39.128 -07 000000551 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36850, posNoise = 7, negNoise = 4
17-03-17 19:32:39.128 -07 000000551 INF: Z Motor: After move to -0.177057, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:39.128 -07 000000551 INF: Z Motor: Settle wait time = 1436 ms, measure time = 105 ms (allowed 150 ms), total time = 1541 ms
17-03-17 19:32:39.128 -07 000000551 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:32:39.178 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 19:32:39.178 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:32:39.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:39.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:39.178 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:39.178 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:39.178 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:32:39.178 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:39.178 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:32:39.178 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:32:39.188 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:32:39.188 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:32:39.198 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:32:39.198 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:32:39.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:32:39.248 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:32:39.448 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:32:39.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:32:39.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:32:39.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-17 19:32:39.488 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:32:39.488 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 19:32:39.488 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 19:32:39.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:32:39.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:39.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:32:39.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:32:39.588 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:39.588 -07 000000623 INF: Autofocus start
17-03-17 19:32:39.588 -07 000000623 INF: MeasureProfile start
17-03-17 19:32:39.588 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:39.598 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:32:39.598 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:32:39.598 -07 000000623 INF: MeasureProfile done
17-03-17 19:32:39.598 -07 000000623 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:32:39.598 -07 000000623 INF: Autofocus finished
17-03-17 19:32:39.798 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:32:39.798 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:32:39.798 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.177055569435026. ----------
17-03-17 19:32:39.798 -07 000000610 INF: Cycle	27	Tile	7	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:32:39.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37175, sync = True, waitForSettling = True)
17-03-17 19:32:39.808 -07 000000610 INF: Z Motor: Moving to -0.170176 mm, started at -0.177056 mm, distance = 6.88 um
17-03-17 19:32:39.808 -07 000000610 INF: FPGA: Xmit ZDACW 37175\n [Z Motor]
17-03-17 19:32:39.808 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:32:39.818 -07 000000610 INF: FPGA: 'ZDACW 37175' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:32:39.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:39.818 -07 000000569 INF: FPGA: Recv ZDACR 37175
17-03-17 19:32:39.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:39.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:32:39.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:39.978 -07 000000541 INF: FPGA: Recv ZSGSRD 35782
17-03-17 19:32:39.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:39.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:39.988 -07 000000502 INF: FPGA: Recv ZSGSRD 35780
17-03-17 19:32:39.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:39.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:39.998 -07 000000627 INF: FPGA: Recv ZSGSRD 35783
17-03-17 19:32:40.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:40.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:40.008 -07 000000626 INF: FPGA: Recv ZSGSRD 35781
17-03-17 19:32:40.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:40.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:40.018 -07 000000478 INF: FPGA: Recv ZSGSRD 35777
17-03-17 19:32:40.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:40.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:40.028 -07 000000438 INF: FPGA: Recv ZSGSRD 35778
17-03-17 19:32:40.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:40.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:40.038 -07 000000608 INF: FPGA: Recv ZSGSRD 35785
17-03-17 19:32:40.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:40.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:40.048 -07 000000431 INF: FPGA: Recv ZSGSRD 35786
17-03-17 19:32:40.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:40.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:40.058 -07 000000012 INF: FPGA: Recv ZSGSRD 35777
17-03-17 19:32:40.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:40.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:40.068 -07 000000551 INF: FPGA: Recv ZSGSRD 35780
17-03-17 19:32:40.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:40.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:40.078 -07 000000462 INF: FPGA: Recv ZPIEZORD 31760
17-03-17 19:32:40.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:40.088 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.673 V. Piezo Error = -8.9 V.
17-03-17 19:32:40.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35781 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35780 (-169.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35777 (-169.3 uncal um), Max = 35786 (-169.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:32:40.088 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35781, posNoise = 5, negNoise = 4
17-03-17 19:32:40.088 -07 000000610 INF: Z Motor: After move to -0.170176, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:40.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:32:40.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:40.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:40.088 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:40.088 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:40.088 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:32:40.088 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:40.088 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:32:40.088 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:32:40.088 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:32:40.088 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:32:40.088 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:32:40.088 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:32:40.098 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:32:40.098 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:32:40.098 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:32:40.098 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:32:40.098 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:32:40.098 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:32:40.108 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:32:40.108 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:32:40.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37352 150\n [Camera]
17-03-17 19:32:40.308 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:32:40.708 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:32:40.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:32:40.708 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:40.718 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:32:40.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:32:40.718 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:40.718 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:40.718 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2586097424, 0x0, 391868352) start.
17-03-17 19:32:40.718 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:40.718 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:32:40.898 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37352 787
17-03-17 19:32:41.048 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:32:41.088 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:32:41.088 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:32:41.088 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:41.098 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2586097424, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:32:41.098 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:32:41.098 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:41.098 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:32:41.098 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:41.098 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:32:41.108 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:32:41.248 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:32:41.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:32:41.248 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:32:41.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:32:41.258 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:41.258 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:41.368 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:41.368 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:32:41.368 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:41.368 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:32:41.438 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:32:41.438 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:32:41.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37352 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-17 19:32:41.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:32:41.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.170188086655484. ------
17-03-17 19:32:41.448 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:41.448 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17675 mm
17-03-17 19:32:41.448 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:32:41.448 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38612, sync = True, waitForSettling = False)
17-03-17 19:32:41.448 -07 000000478 INF: Z Motor: Moving to -0.176754 mm, started at -0.170188 mm, distance = -6.57 um
17-03-17 19:32:41.448 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:41.448 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:32:41.448 -07 000000551 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 19:32:41.458 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:41.458 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:41.458 -07 000000627 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:32:41.468 -07 000000478 INF: FPGA: Xmit ZDACW 38612\n [Z Motor]
17-03-17 19:32:41.468 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:32:41.468 -07 000000551 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:41.468 -07 000000551 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:32:41.468 -07 000000551 INF: Y Motor: Moving 1350 steps-28
17-03-17 19:32:41.468 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:32:41.478 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:32:41.478 -07 000000478 INF: FPGA: 'ZDACW 38612' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:32:41.488 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:32:41.498 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:41.498 -07 000000502 INF: FPGA: Recv ZDACR 38612
17-03-17 19:32:41.508 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:32:41.508 -07 000000478 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 19:32:41.678 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:32:41.678 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:32:41.698 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:32:41.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:32:41.748 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:32:41.748 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:32:41.748 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:41.758 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:41.758 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:32:41.758 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:32:41.758 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:41.758 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:41.758 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 19:32:41.758 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-17 19:32:41.858 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:32:41.858 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:32:41.898 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:41.898 -07 000000626 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:32:41.908 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:32:41.908 -07 000000551 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:41.908 -07 000000551 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:32:41.908 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 19:32:42.858 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:42.858 -07 000000608 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:32:42.868 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:42.868 -07 000000551 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:42.888 -07 000000551 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:32:42.888 -07 000000551 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:32:42.888 -07 000000551 INF: Y Motor: Moved to 65.7144 after 1438 ms (table move)
17-03-17 19:32:42.888 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176754 mm (DAC = 38612)
17-03-17 19:32:42.888 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:42.898 -07 000000429 INF: FPGA: Recv ZSGSRD 36804
17-03-17 19:32:42.898 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:32:42.898 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:42.898 -07 000000623 INF: FPGA: Recv ZSGSRD 36804
17-03-17 19:32:42.908 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:42.908 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:42.908 -07 000000012 INF: FPGA: Recv ZSGSRD 36804
17-03-17 19:32:42.918 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:42.918 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:42.918 -07 000000551 INF: FPGA: Recv ZSGSRD 36811
17-03-17 19:32:42.928 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:42.928 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:42.928 -07 000000502 INF: FPGA: Recv ZSGSRD 36805
17-03-17 19:32:42.938 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:42.938 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:42.938 -07 000000569 INF: FPGA: Recv ZSGSRD 36803
17-03-17 19:32:42.948 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:42.948 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:42.948 -07 000000431 INF: FPGA: Recv ZSGSRD 36805
17-03-17 19:32:42.958 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:42.958 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:42.958 -07 000000438 INF: FPGA: Recv ZSGSRD 36803
17-03-17 19:32:42.968 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:42.968 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:42.968 -07 000000623 INF: FPGA: Recv ZSGSRD 36796
17-03-17 19:32:42.978 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:42.978 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:42.978 -07 000000627 INF: FPGA: Recv ZSGSRD 36804
17-03-17 19:32:42.988 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:42.988 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:42.988 -07 000000431 INF: FPGA: Recv ZPIEZORD 33141
17-03-17 19:32:42.998 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:42.998 -07 000000541 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.892 V. Piezo Error = -8.1 V.
17-03-17 19:32:42.998 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36804 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36804 (-175.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36796 (-175.8 uncal um), Max = 36811 (-175.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:32:42.998 -07 000000541 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36804, posNoise = 7, negNoise = 8
17-03-17 19:32:42.998 -07 000000541 INF: Z Motor: After move to -0.176754, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:42.998 -07 000000541 INF: Z Motor: Settle wait time = 1443 ms, measure time = 103 ms (allowed 150 ms), total time = 1546 ms
17-03-17 19:32:42.998 -07 000000541 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:32:43.048 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 19:32:43.048 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:32:43.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:43.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:43.048 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:43.048 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:43.048 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:32:43.048 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:43.048 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:32:43.048 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:32:43.058 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:32:43.058 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:32:43.058 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:32:43.058 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:32:43.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:32:43.118 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:32:43.318 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:32:43.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:32:43.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:32:43.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 19:32:43.348 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:32:43.358 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 19:32:43.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 288 ms overall
17-03-17 19:32:43.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:32:43.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:43.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:32:43.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:32:43.458 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:43.458 -07 000000431 INF: Autofocus start
17-03-17 19:32:43.458 -07 000000431 INF: MeasureProfile start
17-03-17 19:32:43.458 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:43.468 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:32:43.468 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:32:43.478 -07 000000431 INF: MeasureProfile done
17-03-17 19:32:43.478 -07 000000431 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:32:43.478 -07 000000431 INF: Autofocus finished
17-03-17 19:32:43.668 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:32:43.668 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:32:43.668 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.176760055676505. ----------
17-03-17 19:32:43.678 -07 000000610 INF: Cycle	27	Tile	8	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:32:43.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37109, sync = True, waitForSettling = True)
17-03-17 19:32:43.678 -07 000000610 INF: Z Motor: Moving to -0.169874 mm, started at -0.176760 mm, distance = 6.89 um
17-03-17 19:32:43.678 -07 000000610 INF: FPGA: Xmit ZDACW 37109\n [Z Motor]
17-03-17 19:32:43.678 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:32:43.688 -07 000000610 INF: FPGA: 'ZDACW 37109' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:32:43.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:43.688 -07 000000502 INF: FPGA: Recv ZDACR 37109
17-03-17 19:32:43.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:43.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:32:43.828 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.999021,
17-03-17 19:32:43.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:43.848 -07 000000593 INF: FPGA: Recv ZSGSRD 35730
17-03-17 19:32:43.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:43.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:43.868 -07 000000482 INF: FPGA: Recv ZSGSRD 35739
17-03-17 19:32:43.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:32:43.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:43.888 -07 000000626 INF: FPGA: Recv ZSGSRD 35733
17-03-17 19:32:43.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:32:43.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:43.898 -07 000000569 INF: FPGA: Recv ZSGSRD 35730
17-03-17 19:32:43.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:43.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:43.918 -07 000000475 INF: FPGA: Recv ZSGSRD 35734
17-03-17 19:32:43.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:32:43.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:43.928 -07 000000569 INF: FPGA: Recv ZSGSRD 35728
17-03-17 19:32:43.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:43.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:43.938 -07 000000482 INF: FPGA: Recv ZSGSRD 35736
17-03-17 19:32:43.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:43.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:43.948 -07 000000551 INF: FPGA: Recv ZSGSRD 35733
17-03-17 19:32:43.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:43.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:43.958 -07 000000541 INF: FPGA: Recv ZSGSRD 35738
17-03-17 19:32:43.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:43.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:43.968 -07 000000482 INF: FPGA: Recv ZSGSRD 35731
17-03-17 19:32:43.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:43.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:43.978 -07 000000429 INF: FPGA: Recv ZPIEZORD 31696
17-03-17 19:32:43.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:43.988 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.662 V. Piezo Error = -8.9 V.
17-03-17 19:32:43.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35733 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35733 (-169.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35728 (-169.0 uncal um), Max = 35739 (-169.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:32:43.988 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35733, posNoise = 6, negNoise = 5
17-03-17 19:32:43.988 -07 000000610 INF: Z Motor: After move to -0.169874, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:43.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 308 ms)
17-03-17 19:32:43.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:43.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:43.988 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:43.988 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:43.988 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:32:43.988 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:43.988 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:32:43.988 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:32:43.988 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:32:43.988 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:32:43.988 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:32:43.988 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:32:43.988 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:32:43.988 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:32:43.998 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:32:43.998 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:32:43.998 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:32:43.998 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:32:43.998 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:32:43.998 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:32:44.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37286 150\n [Camera]
17-03-17 19:32:44.208 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:32:44.608 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:32:44.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:32:44.608 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:44.618 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:32:44.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:32:44.618 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:44.618 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:44.618 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2581692120, 0x0, 391868352) start.
17-03-17 19:32:44.618 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:44.618 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2617114384, 0x0, 418435064) start.
17-03-17 19:32:44.798 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37286 787
17-03-17 19:32:44.948 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:32:44.998 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2617114384, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:32:44.998 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:32:44.998 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:44.998 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:44.998 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2581692120, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:32:44.998 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:32:44.998 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:44.998 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:44.998 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:32:45.008 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:32:45.148 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:32:45.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:32:45.148 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:45.148 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:32:45.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:32:45.148 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:45.148 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:45.148 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:32:45.158 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:45.158 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:32:45.338 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:32:45.338 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:32:45.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37286 150' command took 2 ms to send, 1324 ms to get response, and 1330 ms overall
17-03-17 19:32:45.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:32:45.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.169879724472679. ------
17-03-17 19:32:45.448 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17617 mm
17-03-17 19:32:45.448 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:32:45.448 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:45.458 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:32:45.458 -07 000000502 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 19:32:45.458 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:45.458 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38484, sync = True, waitForSettling = False)
17-03-17 19:32:45.458 -07 000000551 INF: Z Motor: Moving to -0.176168 mm, started at -0.169880 mm, distance = -6.29 um
17-03-17 19:32:45.458 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:45.458 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 19:32:45.458 -07 000000593 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:32:45.468 -07 000000551 INF: FPGA: Xmit ZDACW 38484\n [Z Motor]
17-03-17 19:32:45.468 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:32:45.468 -07 000000502 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:45.468 -07 000000502 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:32:45.468 -07 000000502 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:32:45.468 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:32:45.478 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:32:45.478 -07 000000551 INF: FPGA: 'ZDACW 38484' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:32:45.488 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:32:45.498 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:45.498 -07 000000431 INF: FPGA: Recv ZDACR 38484
17-03-17 19:32:45.508 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:32:45.508 -07 000000551 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 19:32:45.548 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:32:45.548 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:32:45.548 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:45.548 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 19:32:45.548 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:32:45.548 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:45.548 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:32:45.548 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:32:45.558 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:32:45.558 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:32:45.678 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:32:45.678 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 19:32:45.858 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 19:32:45.858 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 19:32:45.898 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:45.898 -07 000000593 INF: FPGA: Recv YRDPOS 136272
17-03-17 19:32:45.908 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:32:45.908 -07 000000502 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:45.908 -07 000000502 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:32:45.908 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 19:32:46.698 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:32:46.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:32:46.858 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:46.858 -07 000000431 INF: FPGA: Recv YRDPOS 136272
17-03-17 19:32:46.868 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:46.868 -07 000000502 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:46.888 -07 000000502 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:32:46.888 -07 000000502 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:32:46.888 -07 000000502 INF: Y Motor: Moved to 66.5391 after 1431 ms (table move)
17-03-17 19:32:46.888 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176168 mm (DAC = 38484)
17-03-17 19:32:46.888 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:46.898 -07 000000475 INF: FPGA: Recv ZSGSRD 36718
17-03-17 19:32:46.898 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:32:46.898 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:46.898 -07 000000429 INF: FPGA: Recv ZSGSRD 36715
17-03-17 19:32:46.908 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:46.908 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:46.908 -07 000000431 INF: FPGA: Recv ZSGSRD 36714
17-03-17 19:32:46.918 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:46.918 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:46.918 -07 000000626 INF: FPGA: Recv ZSGSRD 36714
17-03-17 19:32:46.928 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:46.928 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:46.928 -07 000000482 INF: FPGA: Recv ZSGSRD 36713
17-03-17 19:32:46.938 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:46.938 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:46.938 -07 000000608 INF: FPGA: Recv ZSGSRD 36713
17-03-17 19:32:46.948 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:46.948 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:46.948 -07 000000478 INF: FPGA: Recv ZSGSRD 36711
17-03-17 19:32:46.958 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:46.958 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:46.958 -07 000000475 INF: FPGA: Recv ZSGSRD 36708
17-03-17 19:32:46.968 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:46.968 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:46.968 -07 000000429 INF: FPGA: Recv ZSGSRD 36712
17-03-17 19:32:46.978 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:46.978 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:46.978 -07 000000608 INF: FPGA: Recv ZSGSRD 36710
17-03-17 19:32:46.988 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:46.988 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:46.988 -07 000000551 INF: FPGA: Recv ZPIEZORD 32999
17-03-17 19:32:46.998 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:46.998 -07 000000627 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.872 V. Piezo Error = -8.2 V.
17-03-17 19:32:46.998 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36713 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36713 (-175.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36708 (-175.3 uncal um), Max = 36718 (-175.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:32:46.998 -07 000000627 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36713, posNoise = 5, negNoise = 5
17-03-17 19:32:46.998 -07 000000627 INF: Z Motor: After move to -0.176168, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:46.998 -07 000000627 INF: Z Motor: Settle wait time = 1435 ms, measure time = 103 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:32:46.998 -07 000000627 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:32:47.048 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 19:32:47.048 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:32:47.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:47.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:47.048 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:47.048 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:47.048 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:32:47.048 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:47.048 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:32:47.048 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:32:47.058 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:32:47.058 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:32:47.058 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:32:47.058 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:32:47.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:32:47.108 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:32:47.308 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:32:47.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:32:47.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:32:47.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:32:47.348 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:32:47.348 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 19:32:47.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 19:32:47.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:32:47.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:47.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:32:47.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:32:47.448 -07 000000569 INF: Autofocus start
17-03-17 19:32:47.448 -07 000000569 INF: MeasureProfile start
17-03-17 19:32:47.448 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:47.448 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:47.458 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:32:47.458 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:32:47.458 -07 000000569 INF: MeasureProfile done
17-03-17 19:32:47.458 -07 000000569 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:32:47.458 -07 000000569 INF: Autofocus finished
17-03-17 19:32:47.658 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:32:47.658 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:32:47.658 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.176175452371605. ----------
17-03-17 19:32:47.658 -07 000000610 INF: Cycle	27	Tile	9	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:32:47.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37017, sync = True, waitForSettling = True)
17-03-17 19:32:47.668 -07 000000610 INF: Z Motor: Moving to -0.169453 mm, started at -0.176175 mm, distance = 6.72 um
17-03-17 19:32:47.668 -07 000000610 INF: FPGA: Xmit ZDACW 37017\n [Z Motor]
17-03-17 19:32:47.668 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:32:47.678 -07 000000610 INF: FPGA: 'ZDACW 37017' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:32:47.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:47.678 -07 000000551 INF: FPGA: Recv ZDACR 37017
17-03-17 19:32:47.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:47.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:32:47.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:47.838 -07 000000541 INF: FPGA: Recv ZSGSRD 35671
17-03-17 19:32:47.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:47.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:47.848 -07 000000431 INF: FPGA: Recv ZSGSRD 35672
17-03-17 19:32:47.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:47.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:47.858 -07 000000462 INF: FPGA: Recv ZSGSRD 35666
17-03-17 19:32:47.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:47.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:47.868 -07 000000608 INF: FPGA: Recv ZSGSRD 35662
17-03-17 19:32:47.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:47.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:47.878 -07 000000593 INF: FPGA: Recv ZSGSRD 35674
17-03-17 19:32:47.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:47.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:47.888 -07 000000512 INF: FPGA: Recv ZSGSRD 35668
17-03-17 19:32:47.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:47.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:47.898 -07 000000431 INF: FPGA: Recv ZSGSRD 35669
17-03-17 19:32:47.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:47.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:47.908 -07 000000462 INF: FPGA: Recv ZSGSRD 35665
17-03-17 19:32:47.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:47.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:47.918 -07 000000502 INF: FPGA: Recv ZSGSRD 35670
17-03-17 19:32:47.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:47.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:47.928 -07 000000593 INF: FPGA: Recv ZSGSRD 35671
17-03-17 19:32:47.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:47.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:47.938 -07 000000512 INF: FPGA: Recv ZPIEZORD 31594
17-03-17 19:32:47.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:47.948 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.648 V. Piezo Error = -9.0 V.
17-03-17 19:32:47.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35669 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35670 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35662 (-168.6 uncal um), Max = 35674 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:32:47.948 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35669, posNoise = 5, negNoise = 7
17-03-17 19:32:47.948 -07 000000610 INF: Z Motor: After move to -0.169453, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:47.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:32:47.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:47.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:47.948 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:47.948 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:32:47.948 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:32:47.948 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:32:47.948 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:47.948 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:47.948 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:32:47.948 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:32:47.948 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:32:47.948 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:32:47.958 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:32:47.958 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:32:47.958 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:32:47.958 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:32:47.968 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:32:47.968 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:32:47.968 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:32:47.968 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:32:47.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37194 150\n [Camera]
17-03-17 19:32:48.178 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:32:48.578 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:32:48.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:32:48.578 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:48.578 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:32:48.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:32:48.578 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:48.578 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:48.578 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 19:32:48.588 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:48.588 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:32:48.768 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37194 787
17-03-17 19:32:48.918 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:32:48.968 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:32:48.968 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:32:48.968 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:48.968 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 19:32:48.968 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:32:48.968 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:48.978 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:32:48.978 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:32:48.978 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:32:48.988 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:32:49.108 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:32:49.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:32:49.108 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:49.118 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:32:49.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:32:49.118 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:49.118 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:49.118 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 19:32:49.118 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:49.118 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:32:49.238 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.99219,
17-03-17 19:32:49.298 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:32:49.298 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:32:49.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37194 150' command took 2 ms to send, 1318 ms to get response, and 1329 ms overall
17-03-17 19:32:49.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:32:49.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.169468574895607. ------
17-03-17 19:32:49.308 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:49.308 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17626 mm
17-03-17 19:32:49.308 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:32:49.308 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:32:49.308 -07 000000512 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 19:32:49.308 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38503, sync = True, waitForSettling = False)
17-03-17 19:32:49.308 -07 000000462 INF: Z Motor: Moving to -0.176255 mm, started at -0.169469 mm, distance = -6.79 um
17-03-17 19:32:49.318 -07 000000462 INF: FPGA: Xmit ZDACW 38503\n [Z Motor]
17-03-17 19:32:49.318 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:49.318 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:32:49.318 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 19:32:49.328 -07 000000462 INF: FPGA: 'ZDACW 38503' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:49.328 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:49.328 -07 000000478 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:32:49.338 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 19:32:49.338 -07 000000512 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:49.338 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:32:49.338 -07 000000512 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:32:49.338 -07 000000512 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:32:49.348 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:49.348 -07 000000593 INF: FPGA: Recv ZDACR 38503
17-03-17 19:32:49.358 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:32:49.358 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:32:49.358 -07 000000462 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 19:32:49.508 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:32:49.508 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:32:49.508 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:49.508 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:32:49.508 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:32:49.508 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:49.508 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:49.508 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:32:49.518 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:49.518 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:32:49.538 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:32:49.538 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 19:32:49.728 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 19:32:49.728 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:32:49.768 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:49.768 -07 000000502 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:32:49.778 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:32:49.778 -07 000000512 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:49.778 -07 000000512 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 19:32:49.778 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 19:32:50.728 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:50.728 -07 000000593 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:32:50.738 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:50.738 -07 000000512 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:50.758 -07 000000512 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:32:50.758 -07 000000512 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:32:50.758 -07 000000512 INF: Y Motor: Moved to 67.3721 after 1443 ms (table move)
17-03-17 19:32:50.758 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176255 mm (DAC = 38503)
17-03-17 19:32:50.758 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:50.758 -07 000000438 INF: FPGA: Recv ZSGSRD 36729
17-03-17 19:32:50.768 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:32:50.768 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:50.768 -07 000000623 INF: FPGA: Recv ZSGSRD 36721
17-03-17 19:32:50.778 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:50.778 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:50.778 -07 000000569 INF: FPGA: Recv ZSGSRD 36722
17-03-17 19:32:50.788 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:50.788 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:50.788 -07 000000429 INF: FPGA: Recv ZSGSRD 36726
17-03-17 19:32:50.798 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:50.798 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:50.798 -07 000000438 INF: FPGA: Recv ZSGSRD 36733
17-03-17 19:32:50.808 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:50.808 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:50.808 -07 000000551 INF: FPGA: Recv ZSGSRD 36728
17-03-17 19:32:50.818 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:50.818 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:50.818 -07 000000593 INF: FPGA: Recv ZSGSRD 36726
17-03-17 19:32:50.828 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:50.828 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:50.828 -07 000000512 INF: FPGA: Recv ZSGSRD 36722
17-03-17 19:32:50.838 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:50.838 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:50.838 -07 000000462 INF: FPGA: Recv ZSGSRD 36723
17-03-17 19:32:50.848 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:50.848 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:50.848 -07 000000438 INF: FPGA: Recv ZSGSRD 36725
17-03-17 19:32:50.858 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:32:50.858 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:50.858 -07 000000627 INF: FPGA: Recv ZPIEZORD 33027
17-03-17 19:32:50.868 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:50.868 -07 000000626 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.875 V. Piezo Error = -8.2 V.
17-03-17 19:32:50.868 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36726 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36726 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36721 (-175.3 uncal um), Max = 36733 (-175.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:32:50.868 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36726, posNoise = 7, negNoise = 5
17-03-17 19:32:50.868 -07 000000626 INF: Z Motor: After move to -0.176255, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:50.868 -07 000000626 INF: Z Motor: Settle wait time = 1446 ms, measure time = 105 ms (allowed 150 ms), total time = 1551 ms
17-03-17 19:32:50.868 -07 000000626 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:32:50.918 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 19:32:50.918 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:32:50.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:50.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:50.918 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:50.918 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:50.918 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:32:50.918 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:50.918 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:32:50.918 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:32:50.928 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:32:50.928 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:32:50.938 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:32:50.938 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:32:50.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:32:50.988 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:32:51.188 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:32:51.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:32:51.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:32:51.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) start.
17-03-17 19:32:51.228 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:32:51.228 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 19:32:51.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 19:32:51.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:32:51.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:51.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:32:51.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:32:51.328 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:51.328 -07 000000502 INF: Autofocus start
17-03-17 19:32:51.328 -07 000000502 INF: MeasureProfile start
17-03-17 19:32:51.328 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:51.338 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:32:51.338 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:32:51.348 -07 000000502 INF: MeasureProfile done
17-03-17 19:32:51.348 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:32:51.348 -07 000000502 INF: Autofocus finished
17-03-17 19:32:51.538 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:32:51.538 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 19:32:51.548 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.176258967129448. ----------
17-03-17 19:32:51.548 -07 000000610 INF: Cycle	27	Tile	10	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:32:51.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37018, sync = True, waitForSettling = True)
17-03-17 19:32:51.548 -07 000000610 INF: Z Motor: Moving to -0.169458 mm, started at -0.176259 mm, distance = 6.80 um
17-03-17 19:32:51.548 -07 000000610 INF: FPGA: Xmit ZDACW 37018\n [Z Motor]
17-03-17 19:32:51.548 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:32:51.558 -07 000000610 INF: FPGA: 'ZDACW 37018' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:32:51.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:51.558 -07 000000462 INF: FPGA: Recv ZDACR 37018
17-03-17 19:32:51.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:51.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:32:51.698 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:32:51.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:32:51.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:51.718 -07 000000429 INF: FPGA: Recv ZSGSRD 35675
17-03-17 19:32:51.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:51.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:51.728 -07 000000438 INF: FPGA: Recv ZSGSRD 35671
17-03-17 19:32:51.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:51.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:51.738 -07 000000608 INF: FPGA: Recv ZSGSRD 35670
17-03-17 19:32:51.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:51.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:51.748 -07 000000626 INF: FPGA: Recv ZSGSRD 35665
17-03-17 19:32:51.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:51.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:51.758 -07 000000541 INF: FPGA: Recv ZSGSRD 35672
17-03-17 19:32:51.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:51.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:51.768 -07 000000429 INF: FPGA: Recv ZSGSRD 35667
17-03-17 19:32:51.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:51.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:51.778 -07 000000462 INF: FPGA: Recv ZSGSRD 35664
17-03-17 19:32:51.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:51.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:51.788 -07 000000608 INF: FPGA: Recv ZSGSRD 35661
17-03-17 19:32:51.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:51.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:51.798 -07 000000478 INF: FPGA: Recv ZSGSRD 35673
17-03-17 19:32:51.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:51.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:51.808 -07 000000482 INF: FPGA: Recv ZSGSRD 35671
17-03-17 19:32:51.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:51.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:51.818 -07 000000429 INF: FPGA: Recv ZPIEZORD 31613
17-03-17 19:32:51.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:51.828 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.649 V. Piezo Error = -9.0 V.
17-03-17 19:32:51.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35669 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35670 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35661 (-168.5 uncal um), Max = 35675 (-168.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:32:51.828 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35669, posNoise = 6, negNoise = 8
17-03-17 19:32:51.828 -07 000000610 INF: Z Motor: After move to -0.169458, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:51.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:32:51.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:51.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:51.828 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:51.828 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:51.828 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:32:51.828 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:51.828 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:32:51.828 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:32:51.828 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:32:51.828 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:32:51.828 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:32:51.828 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:32:51.838 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:32:51.838 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:32:51.838 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:32:51.838 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:32:51.848 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:32:51.848 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:32:51.848 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:32:51.848 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:32:51.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37195 150\n [Camera]
17-03-17 19:32:52.048 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:32:52.448 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:32:52.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:32:52.448 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:52.448 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:32:52.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:32:52.458 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:52.458 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:52.458 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:32:52.458 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:52.458 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1080477344, 0x0, 391868352) start.
17-03-17 19:32:52.638 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37195 787
17-03-17 19:32:52.788 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:32:52.828 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:32:52.828 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:32:52.828 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:52.828 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1080477344, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 19:32:52.828 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 19:32:52.828 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:52.838 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:32:52.838 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:32:52.838 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:32:52.838 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:32:52.988 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:32:52.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:32:52.988 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:52.988 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:32:52.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:32:52.988 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:52.988 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:52.988 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:32:52.988 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:52.988 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:32:53.178 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:32:53.178 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:32:53.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37195 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-17 19:32:53.178 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:32:53.178 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.169468574895607. ------
17-03-17 19:32:53.178 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:53.178 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17577 mm
17-03-17 19:32:53.178 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:32:53.188 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38396, sync = True, waitForSettling = False)
17-03-17 19:32:53.188 -07 000000475 INF: Z Motor: Moving to -0.175766 mm, started at -0.169469 mm, distance = -6.30 um
17-03-17 19:32:53.188 -07 000000475 INF: FPGA: Xmit ZDACW 38396\n [Z Motor]
17-03-17 19:32:53.188 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:32:53.188 -07 000000512 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 19:32:53.188 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:53.188 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:32:53.188 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:32:53.198 -07 000000475 INF: FPGA: 'ZDACW 38396' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:32:53.198 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:32:53.208 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:53.208 -07 000000627 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:32:53.218 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:53.218 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:32:53.218 -07 000000512 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:53.218 -07 000000512 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:32:53.328 -07 000000512 INF: Y Motor: Moving 1345 steps-22
17-03-17 19:32:53.328 -07 000000626 INF: FPGA: Recv ZDACR 38396
17-03-17 19:32:53.328 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 130 ms overall
17-03-17 19:32:53.328 -07 000000475 INF: Z Motor: MoveAbsStepped took 140 ms (did NOT wait for settling yet))
17-03-17 19:32:53.328 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:32:53.378 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:32:53.378 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:32:53.378 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:53.378 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:32:53.378 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:32:53.378 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:53.388 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:53.388 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:53.388 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:32:53.388 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:32:53.398 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:32:53.398 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 19:32:53.698 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 19:32:53.698 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 19:32:53.738 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:53.738 -07 000000501 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:32:53.748 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:32:53.748 -07 000000512 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:53.748 -07 000000512 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:32:53.748 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.841 mm, average velocity = 2.224 mm/sec
17-03-17 19:32:54.598 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.997626,
17-03-17 19:32:54.698 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:54.698 -07 000000623 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:32:54.708 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:54.708 -07 000000512 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:54.728 -07 000000512 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:32:54.728 -07 000000512 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:32:54.728 -07 000000512 INF: Y Motor: Moved to 68.2051 after 1538 ms (table move)
17-03-17 19:32:54.728 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175766 mm (DAC = 38396)
17-03-17 19:32:54.728 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:54.728 -07 000000627 INF: FPGA: Recv ZSGSRD 36658
17-03-17 19:32:54.738 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:32:54.738 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:54.738 -07 000000623 INF: FPGA: Recv ZSGSRD 36654
17-03-17 19:32:54.748 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:54.748 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:54.748 -07 000000462 INF: FPGA: Recv ZSGSRD 36651
17-03-17 19:32:54.758 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:54.758 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:54.758 -07 000000569 INF: FPGA: Recv ZSGSRD 36649
17-03-17 19:32:54.768 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:54.768 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:54.768 -07 000000438 INF: FPGA: Recv ZSGSRD 36643
17-03-17 19:32:54.778 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:54.778 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:54.778 -07 000000593 INF: FPGA: Recv ZSGSRD 36645
17-03-17 19:32:54.788 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:54.788 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:54.788 -07 000000623 INF: FPGA: Recv ZSGSRD 36650
17-03-17 19:32:54.798 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:54.798 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:54.798 -07 000000478 INF: FPGA: Recv ZSGSRD 36650
17-03-17 19:32:54.808 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:54.808 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:54.808 -07 000000626 INF: FPGA: Recv ZSGSRD 36655
17-03-17 19:32:54.818 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:54.818 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:54.818 -07 000000431 INF: FPGA: Recv ZSGSRD 36648
17-03-17 19:32:54.828 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:54.828 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:54.828 -07 000000475 INF: FPGA: Recv ZPIEZORD 32927
17-03-17 19:32:54.838 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:54.838 -07 000000482 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.859 V. Piezo Error = -8.2 V.
17-03-17 19:32:54.838 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36650 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36650 (-174.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36643 (-174.8 uncal um), Max = 36658 (-174.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:32:54.838 -07 000000482 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36650, posNoise = 8, negNoise = 7
17-03-17 19:32:54.838 -07 000000482 INF: Z Motor: After move to -0.175766, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:54.838 -07 000000482 INF: Z Motor: Settle wait time = 1543 ms, measure time = 106 ms (allowed 150 ms), total time = 1649 ms
17-03-17 19:32:54.838 -07 000000482 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:32:54.888 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1701 ms
17-03-17 19:32:54.888 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:32:54.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:54.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:54.888 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:54.888 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:54.888 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:32:54.888 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:54.898 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:32:54.898 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:32:54.898 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:32:54.898 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:32:54.908 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:32:54.908 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:32:54.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:32:54.968 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:32:55.168 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:32:55.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:32:55.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:32:55.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:32:55.208 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:32:55.208 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 19:32:55.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 301 ms overall
17-03-17 19:32:55.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:32:55.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:55.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:32:55.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:32:55.308 -07 000000551 INF: Autofocus start
17-03-17 19:32:55.308 -07 000000551 INF: MeasureProfile start
17-03-17 19:32:55.308 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:55.308 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:55.318 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:32:55.318 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:32:55.318 -07 000000551 INF: MeasureProfile done
17-03-17 19:32:55.318 -07 000000551 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:32:55.318 -07 000000551 INF: Autofocus finished
17-03-17 19:32:55.518 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:32:55.518 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:32:55.528 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175770727006674. ----------
17-03-17 19:32:55.528 -07 000000610 INF: Cycle	27	Tile	11	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:32:55.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36911, sync = True, waitForSettling = True)
17-03-17 19:32:55.528 -07 000000610 INF: Z Motor: Moving to -0.168968 mm, started at -0.175771 mm, distance = 6.80 um
17-03-17 19:32:55.528 -07 000000610 INF: FPGA: Xmit ZDACW 36911\n [Z Motor]
17-03-17 19:32:55.528 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:32:55.538 -07 000000610 INF: FPGA: 'ZDACW 36911' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:32:55.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:55.538 -07 000000593 INF: FPGA: Recv ZDACR 36911
17-03-17 19:32:55.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:55.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:32:55.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:55.698 -07 000000608 INF: FPGA: Recv ZSGSRD 35593
17-03-17 19:32:55.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:55.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:55.708 -07 000000462 INF: FPGA: Recv ZSGSRD 35599
17-03-17 19:32:55.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:55.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:55.718 -07 000000627 INF: FPGA: Recv ZSGSRD 35589
17-03-17 19:32:55.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:55.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:55.728 -07 000000012 INF: FPGA: Recv ZSGSRD 35593
17-03-17 19:32:55.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:55.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:55.738 -07 000000475 INF: FPGA: Recv ZSGSRD 35591
17-03-17 19:32:55.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:55.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:55.748 -07 000000626 INF: FPGA: Recv ZSGSRD 35594
17-03-17 19:32:55.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:55.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:55.758 -07 000000623 INF: FPGA: Recv ZSGSRD 35598
17-03-17 19:32:55.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:55.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:55.768 -07 000000438 INF: FPGA: Recv ZSGSRD 35589
17-03-17 19:32:55.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:55.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:55.778 -07 000000541 INF: FPGA: Recv ZSGSRD 35593
17-03-17 19:32:55.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:55.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:55.788 -07 000000431 INF: FPGA: Recv ZSGSRD 35592
17-03-17 19:32:55.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:55.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:55.798 -07 000000626 INF: FPGA: Recv ZPIEZORD 31534
17-03-17 19:32:55.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:55.808 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -9.0 V.
17-03-17 19:32:55.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35593 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35593 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35589 (-168.1 uncal um), Max = 35599 (-168.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:32:55.808 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35593, posNoise = 6, negNoise = 4
17-03-17 19:32:55.808 -07 000000610 INF: Z Motor: After move to -0.168968, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:55.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:32:55.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:55.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:55.808 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:55.808 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:55.808 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:32:55.808 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:55.808 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:32:55.808 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:32:55.808 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:32:55.808 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:32:55.808 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:32:55.808 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:32:55.818 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:32:55.818 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:32:55.818 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:32:55.818 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:32:55.828 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:32:55.828 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:32:55.828 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:32:55.828 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:32:55.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37087 150\n [Camera]
17-03-17 19:32:56.028 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:32:56.428 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:32:56.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:32:56.428 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:56.428 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:32:56.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:32:56.428 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:56.438 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:56.438 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 19:32:56.438 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:56.438 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:32:56.618 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37087 787
17-03-17 19:32:56.698 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:32:56.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:32:56.768 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:32:56.808 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:32:56.808 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:32:56.808 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:56.818 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:32:56.818 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:32:56.818 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:56.818 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:32:56.818 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:32:56.818 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:32:56.828 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:32:56.968 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:32:56.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:32:56.968 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:32:56.968 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:32:56.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:32:56.968 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:32:56.968 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:32:56.968 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 19:32:56.978 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:32:56.978 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:32:57.158 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:32:57.158 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:32:57.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37087 150' command took 2 ms to send, 1322 ms to get response, and 1329 ms overall
17-03-17 19:32:57.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:32:57.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.168980334772833. ------
17-03-17 19:32:57.278 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17564 mm
17-03-17 19:32:57.278 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:32:57.278 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:57.278 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:32:57.278 -07 000000569 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 19:32:57.278 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38368, sync = True, waitForSettling = False)
17-03-17 19:32:57.278 -07 000000431 INF: Z Motor: Moving to -0.175637 mm, started at -0.168980 mm, distance = -6.66 um
17-03-17 19:32:57.278 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:57.288 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:32:57.288 -07 000000431 INF: FPGA: Xmit ZDACW 38368\n [Z Motor]
17-03-17 19:32:57.288 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:32:57.298 -07 000000431 INF: FPGA: 'ZDACW 38368' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:32:57.298 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:57.298 -07 000000012 INF: FPGA: Recv ZDACR 38368
17-03-17 19:32:57.308 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:57.308 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:57.308 -07 000000431 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 19:32:57.308 -07 000000608 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:32:57.318 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:32:57.318 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 19:32:57.318 -07 000000569 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:57.318 -07 000000569 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:32:57.318 -07 000000569 INF: Y Motor: Moving 1339 steps-15
17-03-17 19:32:57.328 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:32:57.368 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:32:57.368 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:32:57.368 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:57.368 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 19:32:57.368 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:32:57.368 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:57.368 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:32:57.368 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:32:57.368 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:32:57.378 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:32:57.518 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:32:57.518 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 19:32:57.698 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:32:57.698 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 19:32:57.738 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:57.738 -07 000000593 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:32:57.748 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:32:57.748 -07 000000569 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:57.748 -07 000000569 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 19:32:57.748 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.838 mm, average velocity = 2.175 mm/sec
17-03-17 19:32:58.698 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:32:58.698 -07 000000478 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:32:58.708 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:58.708 -07 000000569 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:32:58.728 -07 000000569 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:32:58.728 -07 000000569 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:32:58.728 -07 000000569 INF: Y Motor: Moved to 69.0273 after 1443 ms (table move)
17-03-17 19:32:58.728 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175637 mm (DAC = 38368)
17-03-17 19:32:58.728 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:58.728 -07 000000551 INF: FPGA: Recv ZSGSRD 36629
17-03-17 19:32:58.738 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:32:58.738 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:58.738 -07 000000478 INF: FPGA: Recv ZSGSRD 36628
17-03-17 19:32:58.748 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:58.748 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:58.748 -07 000000608 INF: FPGA: Recv ZSGSRD 36630
17-03-17 19:32:58.758 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:58.758 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:58.758 -07 000000012 INF: FPGA: Recv ZSGSRD 36631
17-03-17 19:32:58.768 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:58.768 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:58.768 -07 000000569 INF: FPGA: Recv ZSGSRD 36634
17-03-17 19:32:58.778 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:58.778 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:58.778 -07 000000502 INF: FPGA: Recv ZSGSRD 36629
17-03-17 19:32:58.788 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:58.788 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:58.788 -07 000000593 INF: FPGA: Recv ZSGSRD 36631
17-03-17 19:32:58.798 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:58.798 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:58.798 -07 000000569 INF: FPGA: Recv ZSGSRD 36628
17-03-17 19:32:58.808 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:32:58.808 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:58.808 -07 000000462 INF: FPGA: Recv ZSGSRD 36626
17-03-17 19:32:58.818 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:58.818 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:58.818 -07 000000627 INF: FPGA: Recv ZSGSRD 36631
17-03-17 19:32:58.828 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:58.828 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:58.828 -07 000000431 INF: FPGA: Recv ZPIEZORD 32887
17-03-17 19:32:58.838 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:58.838 -07 000000541 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.855 V. Piezo Error = -8.3 V.
17-03-17 19:32:58.838 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36630 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36630 (-174.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36626 (-174.7 uncal um), Max = 36634 (-174.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:32:58.838 -07 000000541 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36630, posNoise = 4, negNoise = 4
17-03-17 19:32:58.838 -07 000000541 INF: Z Motor: After move to -0.175637, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:58.838 -07 000000541 INF: Z Motor: Settle wait time = 1446 ms, measure time = 106 ms (allowed 150 ms), total time = 1552 ms
17-03-17 19:32:58.838 -07 000000541 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:32:58.888 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 19:32:58.888 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:32:58.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:58.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:58.888 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:58.888 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:58.888 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:32:58.888 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:58.888 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:32:58.888 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:32:58.898 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:32:58.898 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:32:58.908 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-17 19:32:58.908 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 19:32:58.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:32:58.958 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:32:59.158 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:32:59.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:32:59.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:32:59.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:32:59.198 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:32:59.198 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 19:32:59.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 286 ms overall
17-03-17 19:32:59.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:32:59.278 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:32:59.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:32:59.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:32:59.298 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:32:59.298 -07 000000512 INF: Autofocus start
17-03-17 19:32:59.298 -07 000000512 INF: MeasureProfile start
17-03-17 19:32:59.298 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:32:59.308 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:32:59.308 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:32:59.308 -07 000000512 INF: MeasureProfile done
17-03-17 19:32:59.308 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:32:59.308 -07 000000512 INF: Autofocus finished
17-03-17 19:32:59.508 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:32:59.508 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:32:59.508 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.175642242763839. ----------
17-03-17 19:32:59.508 -07 000000610 INF: Cycle	27	Tile	12	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:32:59.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36883, sync = True, waitForSettling = True)
17-03-17 19:32:59.518 -07 000000610 INF: Z Motor: Moving to -0.168840 mm, started at -0.175642 mm, distance = 6.80 um
17-03-17 19:32:59.518 -07 000000610 INF: FPGA: Xmit ZDACW 36883\n [Z Motor]
17-03-17 19:32:59.518 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:32:59.528 -07 000000610 INF: FPGA: 'ZDACW 36883' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:32:59.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:32:59.528 -07 000000623 INF: FPGA: Recv ZDACR 36883
17-03-17 19:32:59.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:32:59.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:32:59.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:59.688 -07 000000429 INF: FPGA: Recv ZSGSRD 35575
17-03-17 19:32:59.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:32:59.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:59.698 -07 000000626 INF: FPGA: Recv ZSGSRD 35572
17-03-17 19:32:59.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:59.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:59.708 -07 000000623 INF: FPGA: Recv ZSGSRD 35576
17-03-17 19:32:59.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:59.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:59.718 -07 000000502 INF: FPGA: Recv ZSGSRD 35574
17-03-17 19:32:59.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:59.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:59.728 -07 000000012 INF: FPGA: Recv ZSGSRD 35576
17-03-17 19:32:59.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:59.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:59.738 -07 000000569 INF: FPGA: Recv ZSGSRD 35575
17-03-17 19:32:59.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:59.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:59.748 -07 000000561 INF: FPGA: Recv ZSGSRD 35568
17-03-17 19:32:59.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:59.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:59.758 -07 000000623 INF: FPGA: Recv ZSGSRD 35574
17-03-17 19:32:59.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:59.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:59.768 -07 000000627 INF: FPGA: Recv ZSGSRD 35571
17-03-17 19:32:59.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:59.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:32:59.778 -07 000000593 INF: FPGA: Recv ZSGSRD 35572
17-03-17 19:32:59.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:59.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:32:59.788 -07 000000569 INF: FPGA: Recv ZPIEZORD 31490
17-03-17 19:32:59.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:32:59.798 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -9.0 V.
17-03-17 19:32:59.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35573 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35574 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35568 (-167.9 uncal um), Max = 35576 (-168.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:32:59.798 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35573, posNoise = 3, negNoise = 5
17-03-17 19:32:59.798 -07 000000610 INF: Z Motor: After move to -0.168840, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:32:59.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-17 19:32:59.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:32:59.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:32:59.798 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:32:59.798 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:32:59.798 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:32:59.798 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:32:59.798 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:32:59.798 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:32:59.798 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:32:59.798 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:32:59.808 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:32:59.808 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:32:59.808 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:32:59.808 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:32:59.808 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:32:59.808 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:32:59.818 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:32:59.818 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:32:59.818 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:32:59.818 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:32:59.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37059 150\n [Camera]
17-03-17 19:32:59.968 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.027603,
17-03-17 19:33:00.018 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 19:33:00.418 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:33:00.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:33:00.418 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:00.418 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:33:00.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:33:00.428 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:00.428 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:00.428 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 19:33:00.428 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:00.428 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:33:00.608 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37059 787
17-03-17 19:33:00.758 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:33:00.798 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 19:33:00.798 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 19:33:00.798 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:00.798 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:33:00.798 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:33:00.798 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:00.808 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:33:00.808 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:33:00.808 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:33:00.818 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:33:00.958 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:33:00.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:33:00.958 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:00.958 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:33:00.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:33:00.958 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:00.968 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:00.968 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 19:33:00.968 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:00.968 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1059196976, 0x0, 418435064) start.
17-03-17 19:33:01.148 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:33:01.148 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:33:01.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37059 150' command took 2 ms to send, 1324 ms to get response, and 1330 ms overall
17-03-17 19:33:01.148 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:33:01.148 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.168851850529997. ------
17-03-17 19:33:01.158 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17526 mm
17-03-17 19:33:01.158 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:33:01.158 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:01.158 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:01.158 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:33:01.158 -07 000000512 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 19:33:01.158 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38286, sync = True, waitForSettling = False)
17-03-17 19:33:01.158 -07 000000569 INF: Z Motor: Moving to -0.175262 mm, started at -0.168852 mm, distance = -6.41 um
17-03-17 19:33:01.168 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:33:01.168 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:01.168 -07 000000627 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:33:01.178 -07 000000569 INF: FPGA: Xmit ZDACW 38286\n [Z Motor]
17-03-17 19:33:01.178 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:33:01.178 -07 000000512 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:01.178 -07 000000512 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:33:01.178 -07 000000512 INF: Y Motor: Moving 1352 steps-31
17-03-17 19:33:01.178 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:33:01.188 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:33:01.188 -07 000000569 INF: FPGA: 'ZDACW 38286' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:33:01.198 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:33:01.208 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:01.208 -07 000000623 INF: FPGA: Recv ZDACR 38286
17-03-17 19:33:01.218 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:33:01.218 -07 000000569 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 19:33:01.358 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1059196976, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 19:33:01.358 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:33:01.358 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:01.358 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:33:01.358 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:33:01.358 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:01.358 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:01.368 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:01.368 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:33:01.368 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:33:01.388 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:33:01.388 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:33:01.568 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:33:01.568 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:33:01.608 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:01.608 -07 000000429 INF: FPGA: Recv YRDPOS 143080
17-03-17 19:33:01.618 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:33:01.618 -07 000000512 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:01.618 -07 000000512 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:33:01.618 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.140 mm/sec
17-03-17 19:33:01.698 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:33:01.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:33:02.568 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:02.568 -07 000000478 INF: FPGA: Recv YRDPOS 143080
17-03-17 19:33:02.578 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:02.578 -07 000000512 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:02.598 -07 000000512 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:33:02.598 -07 000000512 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:33:02.598 -07 000000512 INF: Y Motor: Moved to 69.8633 after 1435 ms (table move)
17-03-17 19:33:02.598 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175262 mm (DAC = 38286)
17-03-17 19:33:02.598 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:02.598 -07 000000561 INF: FPGA: Recv ZSGSRD 36572
17-03-17 19:33:02.608 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:33:02.608 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:02.608 -07 000000438 INF: FPGA: Recv ZSGSRD 36569
17-03-17 19:33:02.618 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:02.618 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:02.618 -07 000000541 INF: FPGA: Recv ZSGSRD 36563
17-03-17 19:33:02.628 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:02.628 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:02.628 -07 000000482 INF: FPGA: Recv ZSGSRD 36578
17-03-17 19:33:02.638 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:02.638 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:02.638 -07 000000627 INF: FPGA: Recv ZSGSRD 36575
17-03-17 19:33:02.648 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:02.648 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:02.648 -07 000000475 INF: FPGA: Recv ZSGSRD 36567
17-03-17 19:33:02.658 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:02.658 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:02.658 -07 000000512 INF: FPGA: Recv ZSGSRD 36572
17-03-17 19:33:02.668 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:02.668 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:02.668 -07 000000593 INF: FPGA: Recv ZSGSRD 36568
17-03-17 19:33:02.678 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:02.678 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:02.678 -07 000000438 INF: FPGA: Recv ZSGSRD 36567
17-03-17 19:33:02.688 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:02.688 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:02.688 -07 000000462 INF: FPGA: Recv ZSGSRD 36573
17-03-17 19:33:02.698 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:02.698 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:02.698 -07 000000623 INF: FPGA: Recv ZPIEZORD 32824
17-03-17 19:33:02.708 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:02.708 -07 000000626 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.842 V. Piezo Error = -8.3 V.
17-03-17 19:33:02.708 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36570 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36570 (-174.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36563 (-174.3 uncal um), Max = 36578 (-174.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:33:02.708 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36570, posNoise = 8, negNoise = 7
17-03-17 19:33:02.708 -07 000000626 INF: Z Motor: After move to -0.175262, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:02.708 -07 000000626 INF: Z Motor: Settle wait time = 1438 ms, measure time = 105 ms (allowed 150 ms), total time = 1543 ms
17-03-17 19:33:02.708 -07 000000626 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:33:02.758 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 19:33:02.758 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:33:02.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:02.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:02.758 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:02.758 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:33:02.758 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:02.758 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:02.758 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:33:02.758 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:33:02.768 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:33:02.768 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:33:02.778 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:33:02.778 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:33:02.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:33:02.828 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:33:03.028 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:33:03.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:33:03.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:33:03.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111494304, 0x0, 559484976) start.
17-03-17 19:33:03.068 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:33:03.068 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 19:33:03.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 19:33:03.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111494304, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:33:03.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:03.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:33:03.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:33:03.168 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:03.168 -07 000000626 INF: Autofocus start
17-03-17 19:33:03.168 -07 000000626 INF: MeasureProfile start
17-03-17 19:33:03.168 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:03.178 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:33:03.178 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:33:03.178 -07 000000626 INF: MeasureProfile done
17-03-17 19:33:03.178 -07 000000626 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:33:03.178 -07 000000626 INF: Autofocus finished
17-03-17 19:33:03.378 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:33:03.378 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 19:33:03.378 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.175256790035333. ----------
17-03-17 19:33:03.378 -07 000000610 INF: Cycle	27	Tile	13	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:33:03.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36783, sync = True, waitForSettling = True)
17-03-17 19:33:03.388 -07 000000610 INF: Z Motor: Moving to -0.168382 mm, started at -0.175257 mm, distance = 6.88 um
17-03-17 19:33:03.388 -07 000000610 INF: FPGA: Xmit ZDACW 36783\n [Z Motor]
17-03-17 19:33:03.388 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:33:03.398 -07 000000610 INF: FPGA: 'ZDACW 36783' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:33:03.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:03.398 -07 000000475 INF: FPGA: Recv ZDACR 36783
17-03-17 19:33:03.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:03.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:33:03.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:03.558 -07 000000438 INF: FPGA: Recv ZSGSRD 35501
17-03-17 19:33:03.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:03.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:03.568 -07 000000431 INF: FPGA: Recv ZSGSRD 35507
17-03-17 19:33:03.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:03.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:03.578 -07 000000627 INF: FPGA: Recv ZSGSRD 35498
17-03-17 19:33:03.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:03.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:03.588 -07 000000429 INF: FPGA: Recv ZSGSRD 35495
17-03-17 19:33:03.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:03.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:03.598 -07 000000561 INF: FPGA: Recv ZSGSRD 35505
17-03-17 19:33:03.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:03.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:03.608 -07 000000623 INF: FPGA: Recv ZSGSRD 35501
17-03-17 19:33:03.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:03.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:03.618 -07 000000502 INF: FPGA: Recv ZSGSRD 35505
17-03-17 19:33:03.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:03.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:03.628 -07 000000512 INF: FPGA: Recv ZSGSRD 35499
17-03-17 19:33:03.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:03.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:03.638 -07 000000438 INF: FPGA: Recv ZSGSRD 35499
17-03-17 19:33:03.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:03.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:03.648 -07 000000478 INF: FPGA: Recv ZSGSRD 35508
17-03-17 19:33:03.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:03.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:03.658 -07 000000551 INF: FPGA: Recv ZPIEZORD 31422
17-03-17 19:33:03.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:03.668 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.613 V. Piezo Error = -9.0 V.
17-03-17 19:33:03.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35502 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35501 (-167.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35495 (-167.5 uncal um), Max = 35508 (-167.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:33:03.668 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35502, posNoise = 6, negNoise = 7
17-03-17 19:33:03.668 -07 000000610 INF: Z Motor: After move to -0.168382, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:03.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:33:03.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:03.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:03.668 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:33:03.668 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:03.668 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:03.668 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:33:03.668 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:33:03.668 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:03.668 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:33:03.668 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:33:03.668 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:33:03.668 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:33:03.668 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:33:03.668 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:33:03.678 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:33:03.678 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:33:03.678 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:33:03.678 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:33:03.678 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:33:03.678 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:33:03.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36960 150\n [Camera]
17-03-17 19:33:03.888 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:33:04.288 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:33:04.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:33:04.288 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:04.288 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:04.288 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:33:04.288 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:33:04.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:33:04.288 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:04.288 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:04.288 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:33:04.478 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36960 787
17-03-17 19:33:04.628 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:33:04.668 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:33:04.668 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:33:04.668 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:04.668 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:33:04.668 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:33:04.668 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:04.668 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:04.678 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:04.678 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:33:04.678 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:33:04.818 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:33:04.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:33:04.828 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:04.828 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:33:04.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:33:04.828 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:04.828 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:33:04.828 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:04.828 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:04.828 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:33:05.018 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:33:05.018 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:33:05.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36960 150' command took 2 ms to send, 1323 ms to get response, and 1332 ms overall
17-03-17 19:33:05.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:33:05.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.168395731467932. ------
17-03-17 19:33:05.028 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17472 mm
17-03-17 19:33:05.028 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:33:05.028 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:05.028 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:05.028 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:33:05.028 -07 000000623 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 19:33:05.028 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38168, sync = True, waitForSettling = False)
17-03-17 19:33:05.028 -07 000000561 INF: Z Motor: Moving to -0.174722 mm, started at -0.168396 mm, distance = -6.33 um
17-03-17 19:33:05.038 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:05.038 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:05.038 -07 000000627 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:33:05.048 -07 000000561 INF: FPGA: Xmit ZDACW 38168\n [Z Motor]
17-03-17 19:33:05.048 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:33:05.048 -07 000000623 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:05.048 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:33:05.048 -07 000000623 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:33:05.048 -07 000000623 INF: Y Motor: Moving 1342 steps-19
17-03-17 19:33:05.058 -07 000000561 INF: FPGA: 'ZDACW 38168' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:33:05.058 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:33:05.068 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:33:05.078 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:05.078 -07 000000429 INF: FPGA: Recv ZDACR 38168
17-03-17 19:33:05.088 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:33:05.088 -07 000000561 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 19:33:05.208 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:33:05.208 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:33:05.208 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:05.218 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:33:05.218 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:33:05.258 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:33:05.258 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 19:33:05.328 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 501 ms.
17-03-17 19:33:05.328 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-17 19:33:05.328 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:05.328 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:33:05.338 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.015368,
17-03-17 19:33:05.338 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 19:33:05.438 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:33:05.438 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:33:05.478 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:05.478 -07 000000541 INF: FPGA: Recv YRDPOS 144770
17-03-17 19:33:05.488 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:33:05.488 -07 000000623 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:05.488 -07 000000623 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:33:05.488 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.136 mm/sec
17-03-17 19:33:06.438 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:06.438 -07 000000475 INF: FPGA: Recv YRDPOS 144770
17-03-17 19:33:06.448 -07 000000623 INF: FPGA: 'YRDPOS' command took 5 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:06.448 -07 000000623 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:06.468 -07 000000623 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:33:06.468 -07 000000623 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:33:06.468 -07 000000623 INF: Y Motor: Moved to 70.6885 after 1437 ms (table move)
17-03-17 19:33:06.468 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174722 mm (DAC = 38168)
17-03-17 19:33:06.468 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:06.468 -07 000000478 INF: FPGA: Recv ZSGSRD 36487
17-03-17 19:33:06.478 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:33:06.478 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:06.478 -07 000000626 INF: FPGA: Recv ZSGSRD 36487
17-03-17 19:33:06.488 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:06.488 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:06.488 -07 000000462 INF: FPGA: Recv ZSGSRD 36486
17-03-17 19:33:06.498 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:06.498 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:06.498 -07 000000438 INF: FPGA: Recv ZSGSRD 36486
17-03-17 19:33:06.508 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:06.508 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:06.508 -07 000000429 INF: FPGA: Recv ZSGSRD 36497
17-03-17 19:33:06.518 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:06.518 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:06.518 -07 000000608 INF: FPGA: Recv ZSGSRD 36484
17-03-17 19:33:06.528 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:06.528 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:06.528 -07 000000502 INF: FPGA: Recv ZSGSRD 36489
17-03-17 19:33:06.538 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:06.538 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:06.538 -07 000000627 INF: FPGA: Recv ZSGSRD 36486
17-03-17 19:33:06.548 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:06.548 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:06.548 -07 000000593 INF: FPGA: Recv ZSGSRD 36483
17-03-17 19:33:06.558 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:06.558 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:06.558 -07 000000429 INF: FPGA: Recv ZSGSRD 36490
17-03-17 19:33:06.568 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:06.568 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:06.568 -07 000000431 INF: FPGA: Recv ZPIEZORD 32725
17-03-17 19:33:06.578 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:06.578 -07 000000512 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.824 V. Piezo Error = -8.3 V.
17-03-17 19:33:06.578 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36488 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36486 (-173.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36483 (-173.8 uncal um), Max = 36497 (-173.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:33:06.578 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36488, posNoise = 9, negNoise = 5
17-03-17 19:33:06.578 -07 000000512 INF: Z Motor: After move to -0.174722, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:06.578 -07 000000512 INF: Z Motor: Settle wait time = 1440 ms, measure time = 105 ms (allowed 150 ms), total time = 1545 ms
17-03-17 19:33:06.578 -07 000000512 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:33:06.628 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 19:33:06.628 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:33:06.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:06.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:06.628 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:06.628 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:06.628 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:33:06.628 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:06.628 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:33:06.628 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:33:06.638 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:33:06.638 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:33:06.648 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:33:06.648 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:33:06.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:33:06.698 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:33:06.698 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:33:06.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:33:06.898 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:33:06.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:33:06.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:33:06.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:33:06.938 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:33:06.938 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:33:06.938 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 19:33:07.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:33:07.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:07.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:33:07.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:33:07.038 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:07.038 -07 000000431 INF: Autofocus start
17-03-17 19:33:07.038 -07 000000431 INF: MeasureProfile start
17-03-17 19:33:07.038 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:07.048 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:33:07.048 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:33:07.048 -07 000000431 INF: MeasureProfile done
17-03-17 19:33:07.048 -07 000000431 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:33:07.048 -07 000000431 INF: Autofocus finished
17-03-17 19:33:07.248 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:33:07.248 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:33:07.248 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.174730004639709. ----------
17-03-17 19:33:07.248 -07 000000610 INF: Cycle	27	Tile	14	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:33:07.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36701, sync = True, waitForSettling = True)
17-03-17 19:33:07.258 -07 000000610 INF: Z Motor: Moving to -0.168006 mm, started at -0.174730 mm, distance = 6.72 um
17-03-17 19:33:07.258 -07 000000610 INF: FPGA: Xmit ZDACW 36701\n [Z Motor]
17-03-17 19:33:07.258 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:33:07.268 -07 000000610 INF: FPGA: 'ZDACW 36701' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:07.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:07.268 -07 000000608 INF: FPGA: Recv ZDACR 36701
17-03-17 19:33:07.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:07.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:33:07.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:07.428 -07 000000501 INF: FPGA: Recv ZSGSRD 35440
17-03-17 19:33:07.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:07.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:07.438 -07 000000623 INF: FPGA: Recv ZSGSRD 35443
17-03-17 19:33:07.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:07.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:07.448 -07 000000593 INF: FPGA: Recv ZSGSRD 35445
17-03-17 19:33:07.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:07.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:07.458 -07 000000561 INF: FPGA: Recv ZSGSRD 35443
17-03-17 19:33:07.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:07.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:07.468 -07 000000475 INF: FPGA: Recv ZSGSRD 35441
17-03-17 19:33:07.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:07.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:07.478 -07 000000431 INF: FPGA: Recv ZSGSRD 35445
17-03-17 19:33:07.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:07.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:07.488 -07 000000512 INF: FPGA: Recv ZSGSRD 35441
17-03-17 19:33:07.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:07.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:07.498 -07 000000627 INF: FPGA: Recv ZSGSRD 35439
17-03-17 19:33:07.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:07.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:07.508 -07 000000501 INF: FPGA: Recv ZSGSRD 35443
17-03-17 19:33:07.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:07.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:07.518 -07 000000475 INF: FPGA: Recv ZSGSRD 35447
17-03-17 19:33:07.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:07.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:07.528 -07 000000478 INF: FPGA: Recv ZPIEZORD 31380
17-03-17 19:33:07.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:07.538 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.0 V.
17-03-17 19:33:07.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35443 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35443 (-167.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35439 (-167.1 uncal um), Max = 35447 (-167.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:33:07.538 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35443, posNoise = 4, negNoise = 4
17-03-17 19:33:07.538 -07 000000610 INF: Z Motor: After move to -0.168006, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:07.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:33:07.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:07.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:07.538 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:07.538 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:33:07.538 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:33:07.538 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:33:07.538 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:07.538 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:07.538 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:33:07.538 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:33:07.538 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:33:07.538 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:33:07.538 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:33:07.538 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:33:07.548 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:33:07.548 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:33:07.548 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:33:07.548 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:33:07.548 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:33:07.558 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:33:07.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36878 150\n [Camera]
17-03-17 19:33:07.758 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:33:08.158 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:33:08.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:33:08.158 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:08.158 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:33:08.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:33:08.158 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:08.168 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:08.168 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 19:33:08.168 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:08.168 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:33:08.348 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36878 787
17-03-17 19:33:08.498 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:33:08.538 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:33:08.538 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:33:08.538 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:33:08.538 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:08.538 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:33:08.538 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:08.548 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:08.548 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:08.548 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:33:08.548 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:33:08.698 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:33:08.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:33:08.698 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:08.698 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:33:08.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:33:08.698 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:08.708 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:08.708 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 19:33:08.708 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:08.708 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:33:08.888 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:33:08.888 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:33:08.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36878 150' command took 2 ms to send, 1323 ms to get response, and 1330 ms overall
17-03-17 19:33:09.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:33:09.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.168016702951569. ------
17-03-17 19:33:09.008 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17467 mm
17-03-17 19:33:09.008 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:33:09.008 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:09.008 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:33:09.008 -07 000000512 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 19:33:09.008 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38156, sync = True, waitForSettling = False)
17-03-17 19:33:09.008 -07 000000475 INF: Z Motor: Moving to -0.174667 mm, started at -0.168017 mm, distance = -6.65 um
17-03-17 19:33:09.008 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:09.018 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:33:09.018 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:09.018 -07 000000627 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:33:09.028 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:33:09.028 -07 000000512 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:09.028 -07 000000475 INF: FPGA: Xmit ZDACW 38156\n [Z Motor]
17-03-17 19:33:09.028 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:33:09.028 -07 000000512 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:33:09.028 -07 000000512 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:33:09.038 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:33:09.038 -07 000000475 INF: FPGA: 'ZDACW 38156' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 19:33:09.048 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:33:09.058 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:09.058 -07 000000431 INF: FPGA: Recv ZDACR 38156
17-03-17 19:33:09.068 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:33:09.068 -07 000000475 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 19:33:09.088 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:33:09.088 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:33:09.088 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:09.088 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:33:09.088 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:33:09.088 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:09.088 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:33:09.088 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:09.088 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:33:09.098 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:33:09.238 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:33:09.238 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:33:09.418 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 19:33:09.418 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:33:09.458 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:09.458 -07 000000012 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:33:09.468 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:33:09.468 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:09.468 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:33:09.468 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-17 19:33:10.418 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:10.418 -07 000000627 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:33:10.428 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:10.428 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:10.448 -07 000000512 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:33:10.448 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:33:10.448 -07 000000512 INF: Y Motor: Moved to 71.5190 after 1433 ms (table move)
17-03-17 19:33:10.448 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174667 mm (DAC = 38156)
17-03-17 19:33:10.448 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:10.448 -07 000000462 INF: FPGA: Recv ZSGSRD 36483
17-03-17 19:33:10.458 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:33:10.458 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:10.458 -07 000000623 INF: FPGA: Recv ZSGSRD 36479
17-03-17 19:33:10.468 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:10.468 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:10.468 -07 000000478 INF: FPGA: Recv ZSGSRD 36477
17-03-17 19:33:10.478 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:10.478 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:10.478 -07 000000561 INF: FPGA: Recv ZSGSRD 36475
17-03-17 19:33:10.488 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:10.488 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:10.488 -07 000000502 INF: FPGA: Recv ZSGSRD 36486
17-03-17 19:33:10.498 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:10.498 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:10.498 -07 000000462 INF: FPGA: Recv ZSGSRD 36482
17-03-17 19:33:10.508 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:10.508 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:10.508 -07 000000431 INF: FPGA: Recv ZSGSRD 36486
17-03-17 19:33:10.518 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:10.518 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:10.518 -07 000000478 INF: FPGA: Recv ZSGSRD 36474
17-03-17 19:33:10.528 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:10.528 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:10.528 -07 000000561 INF: FPGA: Recv ZSGSRD 36472
17-03-17 19:33:10.538 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:10.538 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:10.538 -07 000000501 INF: FPGA: Recv ZSGSRD 36477
17-03-17 19:33:10.548 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:10.548 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:10.548 -07 000000626 INF: FPGA: Recv ZPIEZORD 32723
17-03-17 19:33:10.558 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:10.558 -07 000000593 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.822 V. Piezo Error = -8.3 V.
17-03-17 19:33:10.558 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36479 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36478 (-173.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36472 (-173.7 uncal um), Max = 36486 (-173.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:33:10.558 -07 000000593 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36479, posNoise = 7, negNoise = 7
17-03-17 19:33:10.558 -07 000000593 INF: Z Motor: After move to -0.174667, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:10.558 -07 000000593 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-17 19:33:10.558 -07 000000593 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:33:10.608 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 19:33:10.608 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:33:10.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:10.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:10.608 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:10.608 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:10.608 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:33:10.608 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:10.608 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:33:10.618 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:33:10.618 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:33:10.618 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:33:10.628 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:33:10.628 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:33:10.628 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:33:10.678 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 19:33:10.718 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.018051,
17-03-17 19:33:10.878 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 19:33:10.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 19:33:10.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:33:10.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:33:10.918 -07 000000512 INF: FPGA: Recv @CAMSNAP 283
17-03-17 19:33:10.918 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 19:33:10.918 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 288 ms overall
17-03-17 19:33:11.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:33:11.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:11.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:33:11.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:33:11.118 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:11.118 -07 000000431 INF: Autofocus start
17-03-17 19:33:11.118 -07 000000431 INF: MeasureProfile start
17-03-17 19:33:11.118 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:11.128 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:33:11.128 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:33:11.128 -07 000000431 INF: MeasureProfile done
17-03-17 19:33:11.128 -07 000000431 INF: X=-64  Z correction [um]=-0.4038377
17-03-17 19:33:11.128 -07 000000431 INF: Autofocus finished
17-03-17 19:33:11.328 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:33:11.328 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:33:11.338 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174672186730433. ----------
17-03-17 19:33:11.338 -07 000000610 INF: Cycle	27	Tile	15	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:33:11.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36581, sync = True, waitForSettling = True)
17-03-17 19:33:11.338 -07 000000610 INF: Z Motor: Moving to -0.167457 mm, started at -0.174672 mm, distance = 7.22 um
17-03-17 19:33:11.338 -07 000000610 INF: FPGA: Xmit ZDACW 36581\n [Z Motor]
17-03-17 19:33:11.338 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:33:11.348 -07 000000610 INF: FPGA: 'ZDACW 36581' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:33:11.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:11.348 -07 000000501 INF: FPGA: Recv ZDACR 36581
17-03-17 19:33:11.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:11.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:33:11.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:11.508 -07 000000561 INF: FPGA: Recv ZSGSRD 35361
17-03-17 19:33:11.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:11.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:11.518 -07 000000502 INF: FPGA: Recv ZSGSRD 35354
17-03-17 19:33:11.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:11.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:11.528 -07 000000462 INF: FPGA: Recv ZSGSRD 35356
17-03-17 19:33:11.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:11.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:11.538 -07 000000551 INF: FPGA: Recv ZSGSRD 35353
17-03-17 19:33:11.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:11.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:11.548 -07 000000593 INF: FPGA: Recv ZSGSRD 35356
17-03-17 19:33:11.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:11.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:11.558 -07 000000551 INF: FPGA: Recv ZSGSRD 35357
17-03-17 19:33:11.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:11.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:11.568 -07 000000502 INF: FPGA: Recv ZSGSRD 35360
17-03-17 19:33:11.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:11.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:11.578 -07 000000429 INF: FPGA: Recv ZSGSRD 35360
17-03-17 19:33:11.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:11.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:11.588 -07 000000501 INF: FPGA: Recv ZSGSRD 35362
17-03-17 19:33:11.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:11.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:11.598 -07 000000593 INF: FPGA: Recv ZSGSRD 35360
17-03-17 19:33:11.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:11.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:11.608 -07 000000478 INF: FPGA: Recv ZPIEZORD 31249
17-03-17 19:33:11.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:11.618 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.582 V. Piezo Error = -9.1 V.
17-03-17 19:33:11.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35358 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35358 (-166.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35353 (-166.6 uncal um), Max = 35362 (-166.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:33:11.618 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35358, posNoise = 4, negNoise = 5
17-03-17 19:33:11.618 -07 000000610 INF: Z Motor: After move to -0.167457, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:11.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:33:11.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:11.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:11.618 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:33:11.618 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:11.618 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:11.618 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:33:11.618 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:33:11.618 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:33:11.618 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:33:11.618 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:33:11.618 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:33:11.628 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:11.628 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:33:11.628 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:33:11.628 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:33:11.628 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:33:11.638 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:33:11.638 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:33:11.638 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:33:11.638 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:33:11.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36757 150\n [Camera]
17-03-17 19:33:11.698 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:33:11.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:33:11.838 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:33:12.238 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:33:12.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:33:12.238 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:12.248 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:33:12.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:33:12.248 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:12.248 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:12.248 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 19:33:12.248 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:12.248 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:33:12.438 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36757 787
17-03-17 19:33:12.588 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:33:12.628 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:33:12.628 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:33:12.628 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:12.628 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:33:12.628 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:33:12.628 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:33:12.628 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:12.628 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:33:12.628 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:33:12.638 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:33:12.778 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:33:12.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:33:12.778 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:12.778 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:33:12.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:33:12.788 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:12.788 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:12.788 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 19:33:12.788 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:12.788 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1059196976, 0x0, 418435064) start.
17-03-17 19:33:12.968 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:33:12.968 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:33:12.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36757 150' command took 2 ms to send, 1326 ms to get response, and 1329 ms overall
17-03-17 19:33:12.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:33:12.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167470644919519. ------
17-03-17 19:33:12.978 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17337 mm
17-03-17 19:33:12.978 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:33:12.978 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:12.978 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:33:12.978 -07 000000551 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 19:33:12.978 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 37872, sync = True, waitForSettling = False)
17-03-17 19:33:12.978 -07 000000541 INF: Z Motor: Moving to -0.173367 mm, started at -0.167471 mm, distance = -5.90 um
17-03-17 19:33:12.978 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:12.988 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:33:12.988 -07 000000541 INF: FPGA: Xmit ZDACW 37872\n [Z Motor]
17-03-17 19:33:12.988 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:33:12.998 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:12.998 -07 000000541 INF: FPGA: 'ZDACW 37872' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:33:12.998 -07 000000512 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:33:13.008 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:33:13.008 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:33:13.008 -07 000000551 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:13.008 -07 000000551 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:33:13.008 -07 000000551 INF: Y Motor: Moving 1350 steps-28
17-03-17 19:33:13.018 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:13.018 -07 000000569 INF: FPGA: Recv ZDACR 37872
17-03-17 19:33:13.028 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:33:13.028 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:33:13.028 -07 000000541 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 19:33:13.168 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1059196976, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:33:13.168 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:33:13.168 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:33:13.168 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:13.168 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:33:13.168 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:13.178 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:33:13.178 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:33:13.178 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:33:13.178 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:33:13.208 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:33:13.208 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:33:13.398 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 19:33:13.398 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:33:13.438 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:13.438 -07 000000482 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:33:13.448 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:33:13.448 -07 000000551 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:13.448 -07 000000551 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:33:13.448 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 19:33:14.398 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:14.398 -07 000000593 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:33:14.408 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:14.408 -07 000000551 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:14.428 -07 000000551 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:33:14.428 -07 000000551 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:33:14.428 -07 000000551 INF: Y Motor: Moved to 72.3496 after 1445 ms (table move)
17-03-17 19:33:14.428 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173367 mm (DAC = 37872)
17-03-17 19:33:14.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:14.428 -07 000000502 INF: FPGA: Recv ZSGSRD 36283
17-03-17 19:33:14.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:33:14.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:14.438 -07 000000462 INF: FPGA: Recv ZSGSRD 36269
17-03-17 19:33:14.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:14.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:14.448 -07 000000501 INF: FPGA: Recv ZSGSRD 36276
17-03-17 19:33:14.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:14.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:14.458 -07 000000608 INF: FPGA: Recv ZSGSRD 36281
17-03-17 19:33:14.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:14.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:14.468 -07 000000551 INF: FPGA: Recv ZSGSRD 36280
17-03-17 19:33:14.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:14.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:14.478 -07 000000512 INF: FPGA: Recv ZSGSRD 36284
17-03-17 19:33:14.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:14.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:14.488 -07 000000623 INF: FPGA: Recv ZSGSRD 36275
17-03-17 19:33:14.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:14.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:14.498 -07 000000012 INF: FPGA: Recv ZSGSRD 36280
17-03-17 19:33:14.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:14.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:14.508 -07 000000475 INF: FPGA: Recv ZSGSRD 36279
17-03-17 19:33:14.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:14.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:14.518 -07 000000626 INF: FPGA: Recv ZSGSRD 36272
17-03-17 19:33:14.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:14.528 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:14.528 -07 000000438 INF: FPGA: Recv ZPIEZORD 32471
17-03-17 19:33:14.538 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:14.538 -07 000000431 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.779 V. Piezo Error = -8.4 V.
17-03-17 19:33:14.538 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36278 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36280 (-172.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36269 (-172.4 uncal um), Max = 36284 (-172.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:33:14.538 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36278, posNoise = 6, negNoise = 9
17-03-17 19:33:14.538 -07 000000431 INF: Z Motor: After move to -0.173367, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:14.538 -07 000000431 INF: Z Motor: Settle wait time = 1448 ms, measure time = 105 ms (allowed 150 ms), total time = 1553 ms
17-03-17 19:33:14.538 -07 000000431 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:33:14.588 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 19:33:14.588 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:33:14.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:14.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:14.588 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:14.588 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:14.588 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:33:14.588 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:14.588 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:33:14.588 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:33:14.598 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:33:14.598 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:33:14.598 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:33:14.598 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:33:14.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:33:14.648 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:33:14.848 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:33:14.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:33:14.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:33:14.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111494304, 0x0, 559484976) start.
17-03-17 19:33:14.888 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:33:14.888 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 19:33:14.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:33:14.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111494304, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 19:33:14.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:14.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:33:14.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:33:14.988 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:14.988 -07 000000627 INF: Autofocus start
17-03-17 19:33:14.988 -07 000000627 INF: MeasureProfile start
17-03-17 19:33:14.988 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:14.998 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:33:14.998 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:33:14.998 -07 000000627 INF: MeasureProfile done
17-03-17 19:33:14.998 -07 000000627 INF: X=112  Z correction [um]=0.5011052
17-03-17 19:33:14.998 -07 000000627 INF: Autofocus finished
17-03-17 19:33:15.198 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:33:15.198 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:33:15.198 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173380920089939. ----------
17-03-17 19:33:15.198 -07 000000610 INF: Cycle	27	Tile	16	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:33:15.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36494, sync = True, waitForSettling = True)
17-03-17 19:33:15.208 -07 000000610 INF: Z Motor: Moving to -0.167059 mm, started at -0.173381 mm, distance = 6.32 um
17-03-17 19:33:15.208 -07 000000610 INF: FPGA: Xmit ZDACW 36494\n [Z Motor]
17-03-17 19:33:15.208 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:33:15.218 -07 000000610 INF: FPGA: 'ZDACW 36494' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:33:15.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:15.218 -07 000000438 INF: FPGA: Recv ZDACR 36494
17-03-17 19:33:15.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:15.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:33:15.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:15.378 -07 000000478 INF: FPGA: Recv ZSGSRD 35295
17-03-17 19:33:15.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:15.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:15.388 -07 000000593 INF: FPGA: Recv ZSGSRD 35298
17-03-17 19:33:15.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:15.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:15.398 -07 000000475 INF: FPGA: Recv ZSGSRD 35296
17-03-17 19:33:15.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:15.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:15.408 -07 000000501 INF: FPGA: Recv ZSGSRD 35290
17-03-17 19:33:15.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:15.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:15.418 -07 000000551 INF: FPGA: Recv ZSGSRD 35296
17-03-17 19:33:15.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:15.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:15.428 -07 000000012 INF: FPGA: Recv ZSGSRD 35298
17-03-17 19:33:15.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:15.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:15.438 -07 000000512 INF: FPGA: Recv ZSGSRD 35296
17-03-17 19:33:15.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:15.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:15.448 -07 000000431 INF: FPGA: Recv ZSGSRD 35297
17-03-17 19:33:15.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:15.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:15.458 -07 000000462 INF: FPGA: Recv ZSGSRD 35293
17-03-17 19:33:15.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:15.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:15.468 -07 000000623 INF: FPGA: Recv ZSGSRD 35297
17-03-17 19:33:15.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:15.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:15.478 -07 000000482 INF: FPGA: Recv ZPIEZORD 31171
17-03-17 19:33:15.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:15.488 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.569 V. Piezo Error = -9.1 V.
17-03-17 19:33:15.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35296 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35296 (-166.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35290 (-166.2 uncal um), Max = 35298 (-166.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:33:15.488 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35296, posNoise = 2, negNoise = 6
17-03-17 19:33:15.488 -07 000000610 INF: Z Motor: After move to -0.167059, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:15.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:33:15.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:15.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:15.488 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:15.488 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:15.488 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:33:15.488 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:15.488 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:33:15.488 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:33:15.488 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:33:15.488 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:33:15.488 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:33:15.488 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:33:15.488 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:33:15.498 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:33:15.498 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:33:15.498 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:33:15.508 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:33:15.508 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:33:15.508 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:33:15.508 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:33:15.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36671 150\n [Camera]
17-03-17 19:33:15.708 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:33:16.088 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.005817,
17-03-17 19:33:16.108 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:33:16.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:33:16.108 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:16.108 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:16.108 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:33:16.108 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:33:16.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:33:16.108 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:16.108 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:16.108 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:33:16.298 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36671 787
17-03-17 19:33:16.448 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:33:16.498 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:33:16.498 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:33:16.498 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:16.498 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:33:16.498 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:33:16.498 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:16.498 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:16.498 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:16.498 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:33:16.508 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:33:16.648 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:33:16.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:33:16.648 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:16.648 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:33:16.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:33:16.648 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:16.648 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:33:16.648 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:16.648 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:16.648 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:33:16.698 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:33:16.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:33:16.838 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:33:16.838 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:33:16.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36671 150' command took 2 ms to send, 1322 ms to get response, and 1330 ms overall
17-03-17 19:33:16.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:33:16.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.16707234376673. ------
17-03-17 19:33:16.838 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:16.838 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17365 mm
17-03-17 19:33:16.838 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:33:16.948 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:16.948 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 109 ms to get response, and 111 ms overall
17-03-17 19:33:16.948 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:33:16.958 -07 000000551 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 19:33:16.958 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:33:16.958 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 37933, sync = True, waitForSettling = False)
17-03-17 19:33:16.958 -07 000000608 INF: Z Motor: Moving to -0.173646 mm, started at -0.167072 mm, distance = -6.57 um
17-03-17 19:33:16.968 -07 000000608 INF: FPGA: Xmit ZDACW 37933\n [Z Motor]
17-03-17 19:33:16.968 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:33:16.978 -07 000000608 INF: FPGA: 'ZDACW 37933' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:33:16.978 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:16.978 -07 000000512 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:33:16.988 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:33:16.988 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:16.988 -07 000000551 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:16.988 -07 000000551 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:33:16.988 -07 000000551 INF: Y Motor: Moving 1349 steps-27
17-03-17 19:33:16.988 -07 000000626 INF: FPGA: Recv ZDACR 37933
17-03-17 19:33:16.998 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:33:16.998 -07 000000608 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 19:33:16.998 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:33:17.048 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:33:17.048 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:33:17.048 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:17.048 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:33:17.048 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:33:17.048 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:17.048 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:17.048 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:17.048 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:33:17.058 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:33:17.158 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:33:17.158 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:33:17.368 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 19:33:17.368 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:33:17.408 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:17.408 -07 000000626 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:33:17.418 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:33:17.418 -07 000000551 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:17.418 -07 000000551 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 19:33:17.418 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.173 mm/sec
17-03-17 19:33:18.368 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:18.368 -07 000000438 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:33:18.378 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:18.378 -07 000000551 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:18.398 -07 000000551 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:33:18.398 -07 000000551 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:33:18.398 -07 000000551 INF: Y Motor: Moved to 73.1763 after 1442 ms (table move)
17-03-17 19:33:18.398 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173646 mm (DAC = 37933)
17-03-17 19:33:18.398 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:18.398 -07 000000502 INF: FPGA: Recv ZSGSRD 36318
17-03-17 19:33:18.408 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:33:18.408 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:18.408 -07 000000012 INF: FPGA: Recv ZSGSRD 36315
17-03-17 19:33:18.418 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:18.418 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:18.418 -07 000000561 INF: FPGA: Recv ZSGSRD 36314
17-03-17 19:33:18.428 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:18.428 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:18.428 -07 000000462 INF: FPGA: Recv ZSGSRD 36326
17-03-17 19:33:18.438 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:18.438 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:18.438 -07 000000551 INF: FPGA: Recv ZSGSRD 36325
17-03-17 19:33:18.448 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:18.448 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:18.448 -07 000000478 INF: FPGA: Recv ZSGSRD 36322
17-03-17 19:33:18.458 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:18.458 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:18.458 -07 000000593 INF: FPGA: Recv ZSGSRD 36323
17-03-17 19:33:18.468 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:18.468 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:18.468 -07 000000438 INF: FPGA: Recv ZSGSRD 36318
17-03-17 19:33:18.478 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:18.478 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:18.478 -07 000000608 INF: FPGA: Recv ZSGSRD 36316
17-03-17 19:33:18.488 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:18.488 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:18.488 -07 000000512 INF: FPGA: Recv ZSGSRD 36317
17-03-17 19:33:18.498 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:18.498 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:18.498 -07 000000475 INF: FPGA: Recv ZPIEZORD 32553
17-03-17 19:33:18.508 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:18.508 -07 000000501 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.788 V. Piezo Error = -8.3 V.
17-03-17 19:33:18.508 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36319 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36318 (-172.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36314 (-172.7 uncal um), Max = 36326 (-172.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:33:18.508 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36319, posNoise = 7, negNoise = 5
17-03-17 19:33:18.508 -07 000000501 INF: Z Motor: After move to -0.173646, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:18.508 -07 000000501 INF: Z Motor: Settle wait time = 1444 ms, measure time = 105 ms (allowed 150 ms), total time = 1549 ms
17-03-17 19:33:18.508 -07 000000501 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:33:18.558 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1712 ms
17-03-17 19:33:18.558 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:33:18.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:18.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:18.558 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:18.558 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:18.558 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:33:18.558 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:18.558 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:33:18.558 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:33:18.568 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:33:18.568 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:33:18.568 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:33:18.568 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:33:18.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:33:18.628 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:33:18.818 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:33:18.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:33:18.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:33:18.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:33:18.858 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:33:18.858 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 19:33:18.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 287 ms overall
17-03-17 19:33:18.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 19:33:18.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:18.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:33:18.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 19:33:18.968 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:18.968 -07 000000482 INF: Autofocus start
17-03-17 19:33:18.968 -07 000000482 INF: MeasureProfile start
17-03-17 19:33:18.968 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:18.978 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:33:18.978 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:33:18.978 -07 000000482 INF: MeasureProfile done
17-03-17 19:33:18.978 -07 000000482 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:33:18.978 -07 000000482 INF: Autofocus finished
17-03-17 19:33:19.178 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:33:19.178 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:33:19.178 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.173644312787751. ----------
17-03-17 19:33:19.188 -07 000000610 INF: Cycle	27	Tile	17	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:33:19.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36448, sync = True, waitForSettling = True)
17-03-17 19:33:19.188 -07 000000610 INF: Z Motor: Moving to -0.166848 mm, started at -0.173644 mm, distance = 6.80 um
17-03-17 19:33:19.188 -07 000000610 INF: FPGA: Xmit ZDACW 36448\n [Z Motor]
17-03-17 19:33:19.188 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:33:19.198 -07 000000610 INF: FPGA: 'ZDACW 36448' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:33:19.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:19.198 -07 000000438 INF: FPGA: Recv ZDACR 36448
17-03-17 19:33:19.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:19.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:33:19.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:19.358 -07 000000551 INF: FPGA: Recv ZSGSRD 35264
17-03-17 19:33:19.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:19.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:19.368 -07 000000501 INF: FPGA: Recv ZSGSRD 35264
17-03-17 19:33:19.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:19.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:19.378 -07 000000569 INF: FPGA: Recv ZSGSRD 35265
17-03-17 19:33:19.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:19.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:19.388 -07 000000475 INF: FPGA: Recv ZSGSRD 35262
17-03-17 19:33:19.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:19.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:19.398 -07 000000512 INF: FPGA: Recv ZSGSRD 35271
17-03-17 19:33:19.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:19.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:19.408 -07 000000478 INF: FPGA: Recv ZSGSRD 35263
17-03-17 19:33:19.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:19.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:19.418 -07 000000482 INF: FPGA: Recv ZSGSRD 35257
17-03-17 19:33:19.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:19.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:19.428 -07 000000626 INF: FPGA: Recv ZSGSRD 35266
17-03-17 19:33:19.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:19.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:19.438 -07 000000475 INF: FPGA: Recv ZSGSRD 35267
17-03-17 19:33:19.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:19.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:19.448 -07 000000627 INF: FPGA: Recv ZSGSRD 35264
17-03-17 19:33:19.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:19.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:19.458 -07 000000593 INF: FPGA: Recv ZPIEZORD 31143
17-03-17 19:33:19.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:19.468 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.562 V. Piezo Error = -9.1 V.
17-03-17 19:33:19.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35264 (-166.0 uncal um), Error = 0.8 uncal um, Median = 35264 (-166.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35257 (-166.0 uncal um), Max = 35271 (-166.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:33:19.468 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35264, posNoise = 7, negNoise = 7
17-03-17 19:33:19.468 -07 000000610 INF: Z Motor: After move to -0.166848, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:19.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:33:19.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:19.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:19.468 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:19.468 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:19.468 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:33:19.468 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:19.468 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:33:19.468 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:33:19.468 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:33:19.468 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:33:19.468 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:33:19.468 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:33:19.478 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:33:19.478 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:33:19.478 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:33:19.478 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:33:19.478 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:33:19.478 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:33:19.488 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:33:19.488 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:33:19.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36625 150\n [Camera]
17-03-17 19:33:19.688 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:33:20.088 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:33:20.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:33:20.088 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:20.088 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:33:20.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:33:20.098 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:20.098 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:20.098 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 19:33:20.098 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:20.098 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:33:20.288 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36625 788
17-03-17 19:33:20.428 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:33:20.488 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:33:20.488 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:33:20.488 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:20.488 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:33:20.488 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:33:20.488 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:20.488 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:20.488 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:33:20.488 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:20.498 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:33:20.628 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:33:20.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:33:20.628 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:20.628 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:33:20.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:33:20.628 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:20.638 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:20.638 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 19:33:20.638 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:20.638 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:33:20.818 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:33:20.818 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:33:20.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36625 150' command took 2 ms to send, 1324 ms to get response, and 1330 ms overall
17-03-17 19:33:20.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:33:20.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166866768978193. ------
17-03-17 19:33:20.938 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17327 mm
17-03-17 19:33:20.938 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:33:20.938 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:20.938 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:33:20.938 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37850, sync = True, waitForSettling = False)
17-03-17 19:33:20.938 -07 000000502 INF: Z Motor: Moving to -0.173266 mm, started at -0.166867 mm, distance = -6.40 um
17-03-17 19:33:20.938 -07 000000475 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 19:33:20.938 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:20.948 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:33:20.948 -07 000000502 INF: FPGA: Xmit ZDACW 37850\n [Z Motor]
17-03-17 19:33:20.948 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:33:20.958 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:20.958 -07 000000502 INF: FPGA: 'ZDACW 37850' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:33:20.958 -07 000000429 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:33:20.968 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:33:20.968 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:33:20.968 -07 000000475 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:20.968 -07 000000475 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:33:20.968 -07 000000475 INF: Y Motor: Moving 1354 steps-33
17-03-17 19:33:20.978 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:20.978 -07 000000608 INF: FPGA: Recv ZDACR 37850
17-03-17 19:33:20.988 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:33:20.988 -07 000000502 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 19:33:20.988 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:33:21.028 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:33:21.028 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:33:21.028 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:21.028 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 19:33:21.028 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:33:21.028 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:21.038 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:33:21.038 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:33:21.038 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:33:21.048 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:33:21.168 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:33:21.168 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:33:21.358 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:33:21.358 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:33:21.388 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:21.388 -07 000000512 INF: FPGA: Recv YRDPOS 151568
17-03-17 19:33:21.398 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:33:21.398 -07 000000475 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:21.398 -07 000000475 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:33:21.398 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 19:33:21.448 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.971733,
17-03-17 19:33:21.698 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:33:21.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:33:22.348 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:22.348 -07 000000569 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:33:22.358 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:22.358 -07 000000475 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:22.368 -07 000000475 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:33:22.368 -07 000000475 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:33:22.368 -07 000000475 INF: Y Motor: Moved to 74.0083 after 1430 ms (table move)
17-03-17 19:33:22.378 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173266 mm (DAC = 37850)
17-03-17 19:33:22.378 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:22.378 -07 000000501 INF: FPGA: Recv ZSGSRD 36265
17-03-17 19:33:22.388 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:22.388 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:22.388 -07 000000431 INF: FPGA: Recv ZSGSRD 36261
17-03-17 19:33:22.398 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:22.398 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:22.398 -07 000000623 INF: FPGA: Recv ZSGSRD 36263
17-03-17 19:33:22.408 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:22.408 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:22.408 -07 000000561 INF: FPGA: Recv ZSGSRD 36263
17-03-17 19:33:22.418 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:22.418 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:22.418 -07 000000482 INF: FPGA: Recv ZSGSRD 36265
17-03-17 19:33:22.428 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:22.428 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:22.428 -07 000000502 INF: FPGA: Recv ZSGSRD 36266
17-03-17 19:33:22.438 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:22.438 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:22.438 -07 000000608 INF: FPGA: Recv ZSGSRD 36259
17-03-17 19:33:22.448 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:22.448 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:22.448 -07 000000623 INF: FPGA: Recv ZSGSRD 36258
17-03-17 19:33:22.458 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:22.458 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:22.458 -07 000000561 INF: FPGA: Recv ZSGSRD 36255
17-03-17 19:33:22.468 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:22.468 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:22.468 -07 000000431 INF: FPGA: Recv ZSGSRD 36269
17-03-17 19:33:22.478 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:22.478 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:22.478 -07 000000429 INF: FPGA: Recv ZPIEZORD 32479
17-03-17 19:33:22.488 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:22.488 -07 000000627 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.776 V. Piezo Error = -8.4 V.
17-03-17 19:33:22.488 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36262 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36263 (-172.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36255 (-172.4 uncal um), Max = 36269 (-172.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:33:22.488 -07 000000627 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36262, posNoise = 7, negNoise = 7
17-03-17 19:33:22.488 -07 000000627 INF: Z Motor: After move to -0.173266, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:22.488 -07 000000627 INF: Z Motor: Settle wait time = 1435 ms, measure time = 110 ms (allowed 150 ms), total time = 1545 ms
17-03-17 19:33:22.488 -07 000000627 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 19:33:22.528 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 19:33:22.528 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:33:22.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:22.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:22.528 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:22.528 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:33:22.528 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:22.528 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:22.528 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:33:22.538 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:33:22.538 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 6 ms.
17-03-17 19:33:22.538 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:33:22.548 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:33:22.548 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:33:22.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:33:22.598 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:33:22.798 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:33:22.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:33:22.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:33:22.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:33:22.838 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:33:22.838 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 19:33:22.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 19:33:22.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:33:22.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:22.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:33:22.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:33:22.938 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:22.938 -07 000000551 INF: Autofocus start
17-03-17 19:33:22.938 -07 000000551 INF: MeasureProfile start
17-03-17 19:33:22.938 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:22.948 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:33:22.948 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:33:22.948 -07 000000551 INF: MeasureProfile done
17-03-17 19:33:22.948 -07 000000551 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:33:22.948 -07 000000551 INF: Autofocus finished
17-03-17 19:33:23.148 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:33:23.148 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:33:23.148 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.173278132695671. ----------
17-03-17 19:33:23.148 -07 000000610 INF: Cycle	27	Tile	18	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:33:23.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36383, sync = True, waitForSettling = True)
17-03-17 19:33:23.158 -07 000000610 INF: Z Motor: Moving to -0.166551 mm, started at -0.173278 mm, distance = 6.73 um
17-03-17 19:33:23.158 -07 000000610 INF: FPGA: Xmit ZDACW 36383\n [Z Motor]
17-03-17 19:33:23.158 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:33:23.168 -07 000000610 INF: FPGA: 'ZDACW 36383' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:33:23.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:23.168 -07 000000478 INF: FPGA: Recv ZDACR 36383
17-03-17 19:33:23.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:23.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:33:23.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:23.328 -07 000000438 INF: FPGA: Recv ZSGSRD 35212
17-03-17 19:33:23.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:23.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:23.338 -07 000000429 INF: FPGA: Recv ZSGSRD 35217
17-03-17 19:33:23.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:23.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:23.348 -07 000000512 INF: FPGA: Recv ZSGSRD 35219
17-03-17 19:33:23.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:23.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:23.358 -07 000000475 INF: FPGA: Recv ZSGSRD 35214
17-03-17 19:33:23.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:23.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:23.368 -07 000000593 INF: FPGA: Recv ZSGSRD 35219
17-03-17 19:33:23.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:23.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:23.378 -07 000000462 INF: FPGA: Recv ZSGSRD 35213
17-03-17 19:33:23.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:23.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:23.388 -07 000000478 INF: FPGA: Recv ZSGSRD 35219
17-03-17 19:33:23.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:23.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:23.398 -07 000000431 INF: FPGA: Recv ZSGSRD 35221
17-03-17 19:33:23.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:23.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:23.408 -07 000000541 INF: FPGA: Recv ZSGSRD 35209
17-03-17 19:33:23.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:23.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:23.418 -07 000000623 INF: FPGA: Recv ZSGSRD 35218
17-03-17 19:33:23.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:23.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:23.428 -07 000000012 INF: FPGA: Recv ZPIEZORD 31113
17-03-17 19:33:23.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:23.438 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.1 V.
17-03-17 19:33:23.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35216 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35218 (-165.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35209 (-165.6 uncal um), Max = 35221 (-165.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:33:23.438 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35216, posNoise = 5, negNoise = 7
17-03-17 19:33:23.438 -07 000000610 INF: Z Motor: After move to -0.166551, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:23.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:33:23.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:23.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:23.438 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:23.438 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:33:23.438 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:23.438 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:33:23.438 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:33:23.438 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:23.438 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:33:23.438 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:33:23.438 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:33:23.438 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:33:23.448 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:33:23.448 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:33:23.448 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:33:23.448 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:33:23.448 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:33:23.448 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:33:23.458 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:33:23.458 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:33:23.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36559 150\n [Camera]
17-03-17 19:33:23.658 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:33:24.058 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:33:24.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:33:24.058 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:24.058 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:33:24.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:33:24.068 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:24.068 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 19:33:24.068 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:24.068 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:24.068 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:33:24.248 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36559 787
17-03-17 19:33:24.398 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:33:24.438 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 19:33:24.438 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 19:33:24.438 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:24.448 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:33:24.448 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:33:24.448 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:24.448 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:24.448 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:24.448 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:33:24.458 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:33:24.598 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:33:24.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:33:24.598 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:24.598 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:33:24.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:33:24.598 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:24.608 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:24.608 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 19:33:24.608 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:24.608 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1059196976, 0x0, 418435064) start.
17-03-17 19:33:24.788 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:33:24.788 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:33:24.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36559 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-17 19:33:24.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:33:24.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.166558406795389. ------
17-03-17 19:33:24.788 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:24.788 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17288 mm
17-03-17 19:33:24.788 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:33:24.798 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:24.798 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:33:24.798 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:33:24.798 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:33:24.798 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37766, sync = True, waitForSettling = False)
17-03-17 19:33:24.798 -07 000000462 INF: Z Motor: Moving to -0.172882 mm, started at -0.166558 mm, distance = -6.32 um
17-03-17 19:33:24.798 -07 000000429 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 19:33:24.808 -07 000000462 INF: FPGA: Xmit ZDACW 37766\n [Z Motor]
17-03-17 19:33:24.808 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:33:24.818 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:24.818 -07 000000462 INF: FPGA: 'ZDACW 37766' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:33:24.818 -07 000000501 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:33:24.828 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:33:24.828 -07 000000429 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:24.828 -07 000000429 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:33:24.828 -07 000000429 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:33:24.828 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:24.828 -07 000000502 INF: FPGA: Recv ZDACR 37766
17-03-17 19:33:24.838 -07 000000462 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:33:24.838 -07 000000462 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 19:33:24.838 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:33:24.998 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:33:24.998 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 19:33:25.008 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:33:25.008 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:33:25.008 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:25.008 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1059196976, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 19:33:25.008 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:33:25.008 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:25.008 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:25.008 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 19:33:25.008 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:25.018 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 19:33:25.208 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 19:33:25.208 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:33:25.228 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:25.238 -07 000000561 INF: FPGA: Recv YRDPOS 153256
17-03-17 19:33:25.238 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:33:25.238 -07 000000429 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:25.238 -07 000000429 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 19:33:25.238 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.176 mm/sec
17-03-17 19:33:26.188 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:26.188 -07 000000561 INF: FPGA: Recv YRDPOS 153256
17-03-17 19:33:26.198 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:26.198 -07 000000429 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:26.208 -07 000000429 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:33:26.208 -07 000000429 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:33:26.208 -07 000000429 INF: Y Motor: Moved to 74.8320 after 1411 ms (table move)
17-03-17 19:33:26.208 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172882 mm (DAC = 37766)
17-03-17 19:33:26.208 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:26.218 -07 000000623 INF: FPGA: Recv ZSGSRD 36205
17-03-17 19:33:26.228 -07 000000012 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:33:26.228 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:26.228 -07 000000462 INF: FPGA: Recv ZSGSRD 36200
17-03-17 19:33:26.238 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:26.238 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:26.238 -07 000000438 INF: FPGA: Recv ZSGSRD 36198
17-03-17 19:33:26.248 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:26.248 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:26.248 -07 000000608 INF: FPGA: Recv ZSGSRD 36197
17-03-17 19:33:26.258 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:26.258 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:26.258 -07 000000569 INF: FPGA: Recv ZSGSRD 36203
17-03-17 19:33:26.268 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:26.268 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:26.268 -07 000000623 INF: FPGA: Recv ZSGSRD 36205
17-03-17 19:33:26.278 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:26.278 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:26.278 -07 000000462 INF: FPGA: Recv ZSGSRD 36205
17-03-17 19:33:26.288 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:26.288 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:26.288 -07 000000593 INF: FPGA: Recv ZSGSRD 36207
17-03-17 19:33:26.298 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:26.298 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:26.298 -07 000000608 INF: FPGA: Recv ZSGSRD 36201
17-03-17 19:33:26.308 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:26.308 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:26.308 -07 000000501 INF: FPGA: Recv ZSGSRD 36205
17-03-17 19:33:26.318 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:26.318 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:26.318 -07 000000623 INF: FPGA: Recv ZPIEZORD 32443
17-03-17 19:33:26.328 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:26.328 -07 000000012 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.763 V. Piezo Error = -8.3 V.
17-03-17 19:33:26.328 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36203 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36204 (-172.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36197 (-172.0 uncal um), Max = 36207 (-172.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:33:26.328 -07 000000012 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36203, posNoise = 4, negNoise = 6
17-03-17 19:33:26.328 -07 000000012 INF: Z Motor: After move to -0.172882, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:26.328 -07 000000012 INF: Z Motor: Settle wait time = 1414 ms, measure time = 112 ms (allowed 150 ms), total time = 1526 ms
17-03-17 19:33:26.328 -07 000000012 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 19:33:26.368 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1571 ms
17-03-17 19:33:26.368 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:33:26.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:26.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:26.368 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:26.368 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:26.368 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:33:26.368 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:26.368 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:33:26.368 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:33:26.378 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:33:26.378 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:33:26.378 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:33:26.378 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:33:26.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:33:26.428 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:33:26.628 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:33:26.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:33:26.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:33:26.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111494304, 0x0, 559484976) start.
17-03-17 19:33:26.668 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:33:26.668 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 19:33:26.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:33:26.698 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:33:26.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111494304, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:33:26.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:26.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:33:26.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:33:26.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:33:26.768 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:26.768 -07 000000541 INF: Autofocus start
17-03-17 19:33:26.768 -07 000000541 INF: MeasureProfile start
17-03-17 19:33:26.768 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:26.778 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:33:26.778 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:33:26.778 -07 000000541 INF: MeasureProfile done
17-03-17 19:33:26.778 -07 000000541 INF: X=-80  Z correction [um]=-0.4885566
17-03-17 19:33:26.778 -07 000000541 INF: Autofocus finished
17-03-17 19:33:26.818 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.977204,
17-03-17 19:33:26.978 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:33:26.978 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:33:26.988 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.172899104179307. ----------
17-03-17 19:33:26.988 -07 000000610 INF: Cycle	27	Tile	19	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:33:26.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36172, sync = True, waitForSettling = True)
17-03-17 19:33:26.988 -07 000000610 INF: Z Motor: Moving to -0.165585 mm, started at -0.172899 mm, distance = 7.31 um
17-03-17 19:33:26.988 -07 000000610 INF: FPGA: Xmit ZDACW 36172\n [Z Motor]
17-03-17 19:33:26.988 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 19:33:26.998 -07 000000610 INF: FPGA: 'ZDACW 36172' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:33:26.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:26.998 -07 000000482 INF: FPGA: Recv ZDACR 36172
17-03-17 19:33:27.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:27.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:33:27.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:27.158 -07 000000502 INF: FPGA: Recv ZSGSRD 35069
17-03-17 19:33:27.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:27.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:27.178 -07 000000626 INF: FPGA: Recv ZSGSRD 35065
17-03-17 19:33:27.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:33:27.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:27.188 -07 000000478 INF: FPGA: Recv ZSGSRD 35060
17-03-17 19:33:27.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:27.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:27.208 -07 000000482 INF: FPGA: Recv ZSGSRD 35064
17-03-17 19:33:27.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:33:27.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:27.218 -07 000000438 INF: FPGA: Recv ZSGSRD 35064
17-03-17 19:33:27.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:27.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:27.228 -07 000000475 INF: FPGA: Recv ZSGSRD 35068
17-03-17 19:33:27.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:27.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:27.238 -07 000000501 INF: FPGA: Recv ZSGSRD 35064
17-03-17 19:33:27.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:27.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:27.248 -07 000000512 INF: FPGA: Recv ZSGSRD 35073
17-03-17 19:33:27.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:27.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:27.258 -07 000000012 INF: FPGA: Recv ZSGSRD 35065
17-03-17 19:33:27.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:27.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:27.268 -07 000000541 INF: FPGA: Recv ZSGSRD 35063
17-03-17 19:33:27.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:27.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:27.278 -07 000000502 INF: FPGA: Recv ZPIEZORD 30917
17-03-17 19:33:27.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:27.288 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.519 V. Piezo Error = -9.1 V.
17-03-17 19:33:27.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.6 um, Read 10 ADC samples: Avg = 35066 (-164.7 uncal um), Error = 0.9 uncal um, Median = 35064 (-164.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35060 (-164.7 uncal um), Max = 35073 (-164.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:33:27.288 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35066, posNoise = 7, negNoise = 6
17-03-17 19:33:27.288 -07 000000610 INF: Z Motor: After move to -0.165585, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:27.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 300 ms)
17-03-17 19:33:27.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:27.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:27.288 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:27.288 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:27.288 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:33:27.288 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:27.288 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:33:27.288 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:33:27.288 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:33:27.288 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:33:27.288 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:33:27.288 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:33:27.298 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:33:27.298 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:33:27.298 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:33:27.298 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:33:27.298 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:33:27.298 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:33:27.308 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:33:27.308 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:33:27.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36349 150\n [Camera]
17-03-17 19:33:27.508 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:33:27.908 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:33:27.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:33:27.908 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:27.908 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:27.908 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:33:27.908 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:33:27.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:33:27.918 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:27.918 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:27.918 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:33:28.098 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36349 787
17-03-17 19:33:28.248 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:33:28.298 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:33:28.298 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:33:28.298 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:28.298 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:33:28.298 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:33:28.298 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:28.298 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:28.298 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:33:28.298 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:28.308 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:33:28.448 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:33:28.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:33:28.448 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:28.448 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:33:28.448 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:28.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:33:28.448 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:33:28.448 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:28.448 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:28.448 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:33:28.638 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:33:28.638 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:33:28.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36349 150' command took 2 ms to send, 1324 ms to get response, and 1329 ms overall
17-03-17 19:33:28.858 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 407 ms.
17-03-17 19:33:28.858 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:33:28.858 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:28.858 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 406 ms.
17-03-17 19:33:28.858 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:33:28.858 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:28.858 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:28.858 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 19:33:28.858 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:33:28.858 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:28.868 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 19:33:28.988 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 121 ms.
17-03-17 19:33:28.988 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:33:29.028 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 19:33:29.028 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 19:33:29.028 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:33:29.028 -07 000000502 INF: FPGA: Recv EMCUR 
17-03-17 19:33:29.038 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:33:29.038 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 19:33:29.538 -07 000000438 INF: FPGA: Recv EMIN
17-03-17 19:33:29.538 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 19:33:29.538 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 19:33:29.538 -07 000000482 INF: FPGA: Recv EMCUR 
17-03-17 19:33:29.548 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:33:29.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:33:29.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.165594774974125. ------
17-03-17 19:33:29.548 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:29.548 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14048 mm
17-03-17 19:33:29.548 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:33:29.558 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:29.558 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:33:29.558 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:33:29.558 -07 000000623 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-17 19:33:29.558 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30688, sync = True, waitForSettling = False)
17-03-17 19:33:29.558 -07 000000462 INF: Z Motor: Moving to -0.140481 mm, started at -0.165595 mm, distance = 25.11 um
17-03-17 19:33:29.558 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:33:29.568 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:29.568 -07 000000429 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:33:29.578 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:33:29.578 -07 000000623 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:29.578 -07 000000462 INF: FPGA: Xmit ZDACW 30688\n [Z Motor]
17-03-17 19:33:29.578 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:33:29.578 -07 000000623 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 19:33:29.578 -07 000000623 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:33:29.588 -07 000000462 INF: FPGA: 'ZDACW 30688' command took 1 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:33:29.588 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:29.588 -07 000000501 INF: FPGA: Recv ZDACR 30688
17-03-17 19:33:29.598 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:29.598 -07 000000462 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 19:33:29.598 -07 000000623 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:33:29.758 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:33:29.758 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 19:33:31.228 -07 000000502 INF: FPGA: Recv YMVTO 122702 23904
17-03-17 19:33:31.228 -07 000000623 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1622 ms to get response, and 1648 ms overall
17-03-17 19:33:31.228 -07 000000623 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 19:33:31.228 -07 000000623 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 19:33:31.228 -07 000000623 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1648 ms, distance = 14.919 mm, average velocity = 9.053 mm/sec
17-03-17 19:33:31.698 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:33:31.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:33:32.188 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.979922,
17-03-17 19:33:34.078 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:34.078 -07 000000482 INF: FPGA: Recv YRDPOS 122697
17-03-17 19:33:34.088 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:34.088 -07 000000623 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:34.108 -07 000000623 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:33:34.108 -07 000000623 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 19:33:34.108 -07 000000623 INF: Y Motor: Moved to 59.9106 after 4556 ms
17-03-17 19:33:34.118 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140481 mm (DAC = 30688)
17-03-17 19:33:34.118 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:34.118 -07 000000012 INF: FPGA: Recv ZSGSRD 31157
17-03-17 19:33:34.128 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:33:34.128 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:34.128 -07 000000482 INF: FPGA: Recv ZSGSRD 31152
17-03-17 19:33:34.138 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:34.138 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:34.138 -07 000000569 INF: FPGA: Recv ZSGSRD 31162
17-03-17 19:33:34.148 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:34.148 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:34.148 -07 000000475 INF: FPGA: Recv ZSGSRD 31158
17-03-17 19:33:34.158 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:34.158 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:34.158 -07 000000478 INF: FPGA: Recv ZSGSRD 31160
17-03-17 19:33:34.168 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:34.168 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:34.168 -07 000000438 INF: FPGA: Recv ZSGSRD 31157
17-03-17 19:33:34.178 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:34.178 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:34.178 -07 000000482 INF: FPGA: Recv ZSGSRD 31156
17-03-17 19:33:34.188 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:34.188 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:34.188 -07 000000569 INF: FPGA: Recv ZSGSRD 31155
17-03-17 19:33:34.198 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:34.198 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:34.198 -07 000000475 INF: FPGA: Recv ZSGSRD 31153
17-03-17 19:33:34.208 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:34.208 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:34.208 -07 000000502 INF: FPGA: Recv ZSGSRD 31163
17-03-17 19:33:34.218 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:34.218 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:34.218 -07 000000561 INF: FPGA: Recv ZPIEZORD 26821
17-03-17 19:33:34.228 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:34.228 -07 000000608 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.683 V. Piezo Error = -9.5 V.
17-03-17 19:33:34.228 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.5 um, Read 10 ADC samples: Avg = 31157 (-139.7 uncal um), Error = 0.8 uncal um, Median = 31157 (-139.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31152 (-139.6 uncal um), Max = 31163 (-139.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:33:34.228 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31157, posNoise = 6, negNoise = 5
17-03-17 19:33:34.228 -07 000000608 INF: Z Motor: After move to -0.140481, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:34.228 -07 000000608 INF: Z Motor: Settle wait time = 4559 ms, measure time = 109 ms (allowed 150 ms), total time = 4668 ms
17-03-17 19:33:34.228 -07 000000608 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 19:33:34.278 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4723 ms
17-03-17 19:33:34.278 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:33:34.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:34.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:34.278 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:34.278 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:34.278 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:33:34.278 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:34.278 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:33:34.278 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:33:34.298 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 19:33:34.298 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:33:34.308 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:33:34.308 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:33:34.308 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:33:34.308 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-17 19:33:34.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:33:34.368 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:33:34.568 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:33:34.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:33:34.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:33:34.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:33:34.608 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:33:34.608 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 19:33:34.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 288 ms overall
17-03-17 19:33:34.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 19:33:34.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:34.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:33:34.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 19:33:34.708 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:34.708 -07 000000501 INF: Image SNR check: start
17-03-17 19:33:34.708 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:34.718 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:33:34.718 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:33:34.718 -07 000000501 INF: Image SNR check: pass  [peak (Max-Min)=61.76]
17-03-17 19:33:34.718 -07 000000501 INF: Autofocus start
17-03-17 19:33:34.718 -07 000000501 INF: MeasureProfile start
17-03-17 19:33:34.738 -07 000000501 INF: MeasureProfile done
17-03-17 19:33:34.738 -07 000000501 INF: X=-1  Z correction [um]=-0.008270801
17-03-17 19:33:34.738 -07 000000501 INF: Autofocus finished
17-03-17 19:33:34.918 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:33:34.918 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:33:34.918 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.140482529711981. ----------
17-03-17 19:33:34.918 -07 000000610 INF: Cycle	27	Tile	1	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:33:34.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29199, sync = True, waitForSettling = True)
17-03-17 19:33:34.928 -07 000000610 INF: Z Motor: Moving to -0.133664 mm, started at -0.140483 mm, distance = 6.82 um
17-03-17 19:33:34.928 -07 000000610 INF: FPGA: Xmit ZDACW 29199\n [Z Motor]
17-03-17 19:33:34.928 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:33:34.938 -07 000000610 INF: FPGA: 'ZDACW 29199' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:34.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:34.938 -07 000000482 INF: FPGA: Recv ZDACR 29199
17-03-17 19:33:34.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:34.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:33:35.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:35.098 -07 000000478 INF: FPGA: Recv ZSGSRD 30092
17-03-17 19:33:35.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:35.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:35.108 -07 000000475 INF: FPGA: Recv ZSGSRD 30099
17-03-17 19:33:35.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:35.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:35.118 -07 000000627 INF: FPGA: Recv ZSGSRD 30097
17-03-17 19:33:35.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:35.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:35.128 -07 000000438 INF: FPGA: Recv ZSGSRD 30093
17-03-17 19:33:35.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:35.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:35.138 -07 000000551 INF: FPGA: Recv ZSGSRD 30093
17-03-17 19:33:35.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:35.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:35.148 -07 000000478 INF: FPGA: Recv ZSGSRD 30099
17-03-17 19:33:35.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:35.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:35.158 -07 000000569 INF: FPGA: Recv ZSGSRD 30095
17-03-17 19:33:35.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:35.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:35.168 -07 000000627 INF: FPGA: Recv ZSGSRD 30096
17-03-17 19:33:35.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:35.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:35.178 -07 000000438 INF: FPGA: Recv ZSGSRD 30093
17-03-17 19:33:35.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:35.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:35.188 -07 000000541 INF: FPGA: Recv ZSGSRD 30100
17-03-17 19:33:35.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:35.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:35.198 -07 000000501 INF: FPGA: Recv ZPIEZORD 25673
17-03-17 19:33:35.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:35.208 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.455 V. Piezo Error = -9.7 V.
17-03-17 19:33:35.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30096 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30096 (-132.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30092 (-132.9 uncal um), Max = 30100 (-132.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:33:35.208 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30096, posNoise = 4, negNoise = 4
17-03-17 19:33:35.208 -07 000000610 INF: Z Motor: After move to -0.133664, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:35.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:33:35.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:35.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:35.208 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:35.208 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:35.208 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:33:35.208 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:35.208 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:33:35.208 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:33:35.208 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:33:35.208 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:33:35.208 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:33:35.208 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:33:35.208 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:33:35.208 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:33:35.218 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:33:35.218 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:33:35.228 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 19:33:35.228 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:33:35.238 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:33:35.238 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:33:35.238 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:33:35.238 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 19:33:35.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 29375 150\n [Camera]
17-03-17 19:33:35.438 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:33:35.848 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:33:35.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:33:35.848 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:35.848 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:33:35.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:33:35.848 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:35.848 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:35.848 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 19:33:35.858 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:35.858 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:33:36.038 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29375 787
17-03-17 19:33:36.188 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:33:36.238 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:33:36.238 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:33:36.238 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:33:36.238 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:36.238 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:33:36.238 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:36.238 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:36.238 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:33:36.238 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:36.248 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:33:36.378 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:33:36.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:33:36.388 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:36.388 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:33:36.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:33:36.388 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:36.488 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:36.498 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 19:33:36.498 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:36.498 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:33:36.568 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:33:36.578 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:33:36.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 29375 150' command took 2 ms to send, 1320 ms to get response, and 1329 ms overall
17-03-17 19:33:36.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:33:36.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.133666440629573. ------
17-03-17 19:33:36.578 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:36.578 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14010 mm
17-03-17 19:33:36.578 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:33:36.578 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:36.578 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:33:36.578 -07 000000478 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 19:33:36.588 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:36.588 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:33:36.588 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30604, sync = True, waitForSettling = False)
17-03-17 19:33:36.588 -07 000000501 INF: Z Motor: Moving to -0.140096 mm, started at -0.133666 mm, distance = -6.43 um
17-03-17 19:33:36.588 -07 000000551 INF: FPGA: Recv YRDPOS 122697
17-03-17 19:33:36.598 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:36.598 -07 000000478 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:36.598 -07 000000478 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:33:36.598 -07 000000478 INF: Y Motor: Moving 1331 steps1
17-03-17 19:33:36.598 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:33:36.608 -07 000000501 INF: FPGA: Xmit ZDACW 30604\n [Z Motor]
17-03-17 19:33:36.608 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:33:36.618 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:33:36.618 -07 000000501 INF: FPGA: 'ZDACW 30604' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:33:36.628 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:36.628 -07 000000429 INF: FPGA: Recv ZDACR 30604
17-03-17 19:33:36.638 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:33:36.638 -07 000000501 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 19:33:36.698 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:33:36.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:33:36.798 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:33:36.798 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 194 ms to get response, and 213 ms overall
17-03-17 19:33:36.888 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:33:36.888 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:33:36.888 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:36.888 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 19:33:36.888 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:33:36.888 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:36.888 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:33:36.888 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-17 19:33:36.898 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:33:36.898 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 513 ms.
17-03-17 19:33:36.988 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 19:33:36.988 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:33:37.018 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:37.018 -07 000000551 INF: FPGA: Recv YRDPOS 124381
17-03-17 19:33:37.028 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:33:37.028 -07 000000478 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:37.028 -07 000000478 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 19:33:37.028 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-17 19:33:37.558 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.978563,
17-03-17 19:33:37.978 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:37.978 -07 000000608 INF: FPGA: Recv YRDPOS 124381
17-03-17 19:33:37.988 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:37.988 -07 000000478 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:38.008 -07 000000478 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:33:38.008 -07 000000478 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:33:38.008 -07 000000478 INF: Y Motor: Moved to 60.7329 after 1421 ms (table move)
17-03-17 19:33:38.008 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140096 mm (DAC = 30604)
17-03-17 19:33:38.008 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:38.008 -07 000000569 INF: FPGA: Recv ZSGSRD 31092
17-03-17 19:33:38.018 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:33:38.018 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:38.018 -07 000000626 INF: FPGA: Recv ZSGSRD 31094
17-03-17 19:33:38.028 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:38.028 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:38.028 -07 000000429 INF: FPGA: Recv ZSGSRD 31094
17-03-17 19:33:38.038 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:38.038 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:38.038 -07 000000438 INF: FPGA: Recv ZSGSRD 31099
17-03-17 19:33:38.048 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:38.048 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:38.048 -07 000000501 INF: FPGA: Recv ZSGSRD 31104
17-03-17 19:33:38.058 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:38.058 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:38.058 -07 000000478 INF: FPGA: Recv ZSGSRD 31099
17-03-17 19:33:38.068 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:38.068 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:38.068 -07 000000502 INF: FPGA: Recv ZSGSRD 31103
17-03-17 19:33:38.078 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:38.078 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:38.078 -07 000000475 INF: FPGA: Recv ZSGSRD 31096
17-03-17 19:33:38.088 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:38.088 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:38.088 -07 000000551 INF: FPGA: Recv ZSGSRD 31088
17-03-17 19:33:38.098 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:38.098 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:38.098 -07 000000429 INF: FPGA: Recv ZSGSRD 31099
17-03-17 19:33:38.108 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:38.108 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:38.108 -07 000000462 INF: FPGA: Recv ZPIEZORD 27010
17-03-17 19:33:38.118 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:38.118 -07 000000593 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.670 V. Piezo Error = -9.0 V.
17-03-17 19:33:38.118 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.1 um, Read 10 ADC samples: Avg = 31097 (-139.3 uncal um), Error = 0.8 uncal um, Median = 31098 (-139.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31088 (-139.2 uncal um), Max = 31104 (-139.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:33:38.118 -07 000000593 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31097, posNoise = 7, negNoise = 9
17-03-17 19:33:38.118 -07 000000593 INF: Z Motor: After move to -0.140096, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:38.118 -07 000000593 INF: Z Motor: Settle wait time = 1423 ms, measure time = 106 ms (allowed 150 ms), total time = 1529 ms
17-03-17 19:33:38.118 -07 000000593 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:33:38.168 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 19:33:38.168 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:33:38.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:38.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:38.168 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:38.168 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:38.168 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:33:38.168 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:38.168 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:33:38.168 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:33:38.178 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:33:38.178 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:33:38.188 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:33:38.188 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:33:38.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:33:38.228 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:33:38.428 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:33:38.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:33:38.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:33:38.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 19:33:38.468 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:33:38.468 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 19:33:38.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 19:33:38.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:33:38.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:38.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:33:38.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:33:38.668 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:38.668 -07 000000627 INF: Autofocus start
17-03-17 19:33:38.668 -07 000000627 INF: MeasureProfile start
17-03-17 19:33:38.668 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:38.678 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:33:38.678 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:33:38.678 -07 000000627 INF: MeasureProfile done
17-03-17 19:33:38.678 -07 000000627 INF: X=-11  Z correction [um]=-0.05694899
17-03-17 19:33:38.678 -07 000000627 INF: Autofocus finished
17-03-17 19:33:38.878 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:33:38.878 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:33:38.878 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.140097076983475. ----------
17-03-17 19:33:38.878 -07 000000610 INF: Cycle	27	Tile	2	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:33:38.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29105, sync = True, waitForSettling = True)
17-03-17 19:33:38.888 -07 000000610 INF: Z Motor: Moving to -0.133234 mm, started at -0.140097 mm, distance = 6.86 um
17-03-17 19:33:38.888 -07 000000610 INF: FPGA: Xmit ZDACW 29105\n [Z Motor]
17-03-17 19:33:38.888 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:33:38.898 -07 000000610 INF: FPGA: 'ZDACW 29105' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:33:38.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:38.898 -07 000000593 INF: FPGA: Recv ZDACR 29105
17-03-17 19:33:38.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:38.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:33:39.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:39.058 -07 000000569 INF: FPGA: Recv ZSGSRD 30031
17-03-17 19:33:39.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:39.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:39.068 -07 000000482 INF: FPGA: Recv ZSGSRD 30035
17-03-17 19:33:39.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:39.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:39.078 -07 000000541 INF: FPGA: Recv ZSGSRD 30030
17-03-17 19:33:39.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:39.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:39.088 -07 000000561 INF: FPGA: Recv ZSGSRD 30023
17-03-17 19:33:39.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:39.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:39.098 -07 000000593 INF: FPGA: Recv ZSGSRD 30029
17-03-17 19:33:39.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:39.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:39.108 -07 000000478 INF: FPGA: Recv ZSGSRD 30034
17-03-17 19:33:39.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:39.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:39.118 -07 000000551 INF: FPGA: Recv ZSGSRD 30028
17-03-17 19:33:39.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:39.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:39.128 -07 000000541 INF: FPGA: Recv ZSGSRD 30027
17-03-17 19:33:39.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:39.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:39.138 -07 000000626 INF: FPGA: Recv ZSGSRD 30032
17-03-17 19:33:39.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:39.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:39.148 -07 000000608 INF: FPGA: Recv ZSGSRD 30031
17-03-17 19:33:39.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:39.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:39.158 -07 000000462 INF: FPGA: Recv ZPIEZORD 25624
17-03-17 19:33:39.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:39.168 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.7 V.
17-03-17 19:33:39.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30030 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30030 (-132.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30023 (-132.4 uncal um), Max = 30035 (-132.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:33:39.168 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30030, posNoise = 5, negNoise = 7
17-03-17 19:33:39.168 -07 000000610 INF: Z Motor: After move to -0.133234, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:39.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:33:39.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:39.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:39.168 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:39.168 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:39.168 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:33:39.168 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:33:39.168 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:33:39.168 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:39.168 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:33:39.168 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:33:39.168 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:33:39.168 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:33:39.178 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:33:39.178 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:33:39.178 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:33:39.178 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:33:39.188 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:33:39.188 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:33:39.188 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:33:39.188 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:33:39.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 29281 150\n [Camera]
17-03-17 19:33:39.398 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:33:39.798 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:33:39.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:33:39.798 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:39.798 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:33:39.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:33:39.798 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:39.798 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:39.798 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:33:39.808 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:39.808 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:33:39.988 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29281 787
17-03-17 19:33:40.138 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:33:40.188 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 19:33:40.188 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:33:40.188 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:40.198 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:33:40.198 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:33:40.198 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:40.198 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:40.198 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:33:40.198 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:33:40.208 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 19:33:40.328 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:33:40.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:33:40.328 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:40.338 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:33:40.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:33:40.338 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:40.338 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:40.338 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:33:40.338 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:40.338 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1059196976, 0x0, 418435064) start.
17-03-17 19:33:40.518 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:33:40.528 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:33:40.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 29281 150' command took 2 ms to send, 1322 ms to get response, and 1332 ms overall
17-03-17 19:33:40.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:33:40.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.133242442628217. ------
17-03-17 19:33:40.528 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:40.528 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13992 mm
17-03-17 19:33:40.528 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:33:40.538 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:33:40.538 -07 000000569 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 19:33:40.538 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:40.538 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:40.538 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:33:40.538 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30565, sync = True, waitForSettling = False)
17-03-17 19:33:40.538 -07 000000608 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:33:40.538 -07 000000623 INF: Z Motor: Moving to -0.139918 mm, started at -0.133242 mm, distance = -6.68 um
17-03-17 19:33:40.548 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:40.548 -07 000000569 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:40.548 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:33:40.548 -07 000000569 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:33:40.548 -07 000000569 INF: Y Motor: Moving 1343 steps-20
17-03-17 19:33:40.558 -07 000000623 INF: FPGA: Xmit ZDACW 30565\n [Z Motor]
17-03-17 19:33:40.558 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 19:33:40.568 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:33:40.568 -07 000000623 INF: FPGA: 'ZDACW 30565' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:33:40.578 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:40.578 -07 000000482 INF: FPGA: Recv ZDACR 30565
17-03-17 19:33:40.588 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:33:40.588 -07 000000623 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 19:33:40.738 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1059196976, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:33:40.738 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:33:40.738 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:40.738 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:33:40.738 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:33:40.738 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:40.748 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:40.748 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:40.748 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 19:33:40.748 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:33:40.748 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-17 19:33:40.748 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:33:40.938 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:33:40.938 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 19:33:40.978 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:40.978 -07 000000541 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:33:40.988 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:33:40.988 -07 000000569 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:40.988 -07 000000569 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:33:40.988 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.840 mm, average velocity = 2.148 mm/sec
17-03-17 19:33:41.698 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:33:41.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:33:41.938 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:41.938 -07 000000551 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:33:41.948 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:41.948 -07 000000569 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:41.968 -07 000000569 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:33:41.968 -07 000000569 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:33:41.968 -07 000000569 INF: Y Motor: Moved to 61.5640 after 1431 ms (table move)
17-03-17 19:33:41.968 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139918 mm (DAC = 30565)
17-03-17 19:33:41.968 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:41.968 -07 000000626 INF: FPGA: Recv ZSGSRD 31070
17-03-17 19:33:41.978 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:33:41.978 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:41.978 -07 000000012 INF: FPGA: Recv ZSGSRD 31071
17-03-17 19:33:41.988 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:41.988 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:41.988 -07 000000501 INF: FPGA: Recv ZSGSRD 31059
17-03-17 19:33:41.998 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:41.998 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:41.998 -07 000000593 INF: FPGA: Recv ZSGSRD 31072
17-03-17 19:33:42.008 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:42.008 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:42.008 -07 000000569 INF: FPGA: Recv ZSGSRD 31076
17-03-17 19:33:42.018 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:42.018 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:42.018 -07 000000626 INF: FPGA: Recv ZSGSRD 31070
17-03-17 19:33:42.028 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:42.028 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:42.028 -07 000000012 INF: FPGA: Recv ZSGSRD 31076
17-03-17 19:33:42.038 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:42.038 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:42.038 -07 000000561 INF: FPGA: Recv ZSGSRD 31061
17-03-17 19:33:42.048 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:42.048 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:42.048 -07 000000462 INF: FPGA: Recv ZSGSRD 31067
17-03-17 19:33:42.058 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:42.058 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:42.058 -07 000000512 INF: FPGA: Recv ZSGSRD 31071
17-03-17 19:33:42.068 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:42.068 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:42.068 -07 000000501 INF: FPGA: Recv ZPIEZORD 27033
17-03-17 19:33:42.078 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:42.078 -07 000000429 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.664 V. Piezo Error = -8.9 V.
17-03-17 19:33:42.078 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31069 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31070 (-139.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 31059 (-139.1 uncal um), Max = 31076 (-139.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:33:42.078 -07 000000429 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31069, posNoise = 7, negNoise = 10
17-03-17 19:33:42.078 -07 000000429 INF: Z Motor: After move to -0.139918, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:42.078 -07 000000429 INF: Z Motor: Settle wait time = 1431 ms, measure time = 105 ms (allowed 150 ms), total time = 1536 ms
17-03-17 19:33:42.078 -07 000000429 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:33:42.128 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 19:33:42.128 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:33:42.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:42.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:42.128 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:42.128 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:42.128 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:33:42.128 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:42.128 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:33:42.128 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:33:42.138 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:33:42.138 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:33:42.148 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:33:42.148 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:33:42.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:33:42.198 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:33:42.398 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:33:42.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:33:42.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:33:42.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094619240, 0x0, 559484976) start.
17-03-17 19:33:42.438 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:33:42.438 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 19:33:42.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 19:33:42.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094619240, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:33:42.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:42.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:33:42.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:33:42.538 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:42.538 -07 000000429 INF: Autofocus start
17-03-17 19:33:42.538 -07 000000429 INF: MeasureProfile start
17-03-17 19:33:42.538 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:42.548 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:33:42.548 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:33:42.548 -07 000000429 INF: MeasureProfile done
17-03-17 19:33:42.548 -07 000000429 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:33:42.548 -07 000000429 INF: Autofocus finished
17-03-17 19:33:42.748 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:33:42.748 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:33:42.748 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139917199043506. ----------
17-03-17 19:33:42.748 -07 000000610 INF: Cycle	27	Tile	3	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:33:42.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29089, sync = True, waitForSettling = True)
17-03-17 19:33:42.758 -07 000000610 INF: Z Motor: Moving to -0.133161 mm, started at -0.139917 mm, distance = 6.76 um
17-03-17 19:33:42.758 -07 000000610 INF: FPGA: Xmit ZDACW 29089\n [Z Motor]
17-03-17 19:33:42.758 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:33:42.768 -07 000000610 INF: FPGA: 'ZDACW 29089' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:42.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:42.768 -07 000000627 INF: FPGA: Recv ZDACR 29089
17-03-17 19:33:42.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:42.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:33:42.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:42.928 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.988112,
17-03-17 19:33:42.928 -07 000000429 INF: FPGA: Recv ZSGSRD 30015
17-03-17 19:33:42.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:42.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:42.958 -07 000000012 INF: FPGA: Recv ZSGSRD 30013
17-03-17 19:33:42.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:33:42.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:42.968 -07 000000501 INF: FPGA: Recv ZSGSRD 30015
17-03-17 19:33:42.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:42.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:42.998 -07 000000462 INF: FPGA: Recv ZSGSRD 30018
17-03-17 19:33:43.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:33:43.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:43.018 -07 000000551 INF: FPGA: Recv ZSGSRD 30015
17-03-17 19:33:43.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:33:43.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:43.028 -07 000000608 INF: FPGA: Recv ZSGSRD 30018
17-03-17 19:33:43.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:43.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:43.038 -07 000000478 INF: FPGA: Recv ZSGSRD 30020
17-03-17 19:33:43.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:43.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:43.048 -07 000000569 INF: FPGA: Recv ZSGSRD 30015
17-03-17 19:33:43.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:43.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:43.058 -07 000000626 INF: FPGA: Recv ZSGSRD 30021
17-03-17 19:33:43.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:43.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:43.068 -07 000000429 INF: FPGA: Recv ZSGSRD 30016
17-03-17 19:33:43.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:43.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:43.078 -07 000000627 INF: FPGA: Recv ZPIEZORD 25676
17-03-17 19:33:43.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:43.088 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.439 V. Piezo Error = -9.5 V.
17-03-17 19:33:43.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30017 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30016 (-132.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30013 (-132.3 uncal um), Max = 30021 (-132.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:33:43.088 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30017, posNoise = 4, negNoise = 4
17-03-17 19:33:43.088 -07 000000610 INF: Z Motor: After move to -0.133161, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:43.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 331 ms)
17-03-17 19:33:43.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:43.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:43.088 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:43.088 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:43.088 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:33:43.088 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:43.088 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:33:43.088 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:33:43.088 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:33:43.088 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:33:43.088 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:33:43.088 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:33:43.098 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:33:43.098 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:33:43.098 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:33:43.098 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:33:43.098 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:33:43.098 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:33:43.108 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:33:43.108 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:33:43.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 29266 150\n [Camera]
17-03-17 19:33:43.308 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:33:43.708 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:33:43.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:33:43.708 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:43.708 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:43.708 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:33:43.708 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:33:43.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:33:43.708 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:43.708 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:43.708 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:33:43.898 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29266 787
17-03-17 19:33:44.048 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:33:44.088 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:33:44.088 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:33:44.088 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:33:44.088 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:33:44.088 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:44.088 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:44.098 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:33:44.098 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:33:44.098 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:33:44.108 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:33:44.248 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:33:44.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:33:44.248 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:44.248 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:44.248 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:33:44.248 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:33:44.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:33:44.248 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:44.248 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:44.248 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:33:44.438 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:33:44.438 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:33:44.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 29266 150' command took 2 ms to send, 1322 ms to get response, and 1329 ms overall
17-03-17 19:33:44.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:33:44.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.133158927870374. ------
17-03-17 19:33:44.438 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:44.438 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13961 mm
17-03-17 19:33:44.438 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:33:44.448 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:44.448 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:33:44.448 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30497, sync = True, waitForSettling = False)
17-03-17 19:33:44.448 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:33:44.448 -07 000000608 INF: Z Motor: Moving to -0.139606 mm, started at -0.133159 mm, distance = -6.45 um
17-03-17 19:33:44.448 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:33:44.448 -07 000000569 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 19:33:44.458 -07 000000608 INF: FPGA: Xmit ZDACW 30497\n [Z Motor]
17-03-17 19:33:44.458 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:33:44.468 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:44.468 -07 000000608 INF: FPGA: 'ZDACW 30497' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:33:44.468 -07 000000541 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:33:44.478 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:33:44.478 -07 000000569 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:44.478 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:44.478 -07 000000478 INF: FPGA: Recv ZDACR 30497
17-03-17 19:33:44.478 -07 000000569 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:33:44.478 -07 000000569 INF: Y Motor: Moving 1341 steps-18
17-03-17 19:33:44.488 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:33:44.488 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:33:44.488 -07 000000608 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:33:44.638 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 19:33:44.638 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:33:44.638 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:44.638 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:33:44.638 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:33:44.638 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:44.638 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:44.638 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:44.638 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:33:44.648 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:33:44.648 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:33:44.648 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:33:44.868 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 19:33:44.868 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 384 ms overall
17-03-17 19:33:44.898 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:44.898 -07 000000561 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:33:44.908 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:33:44.908 -07 000000569 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:44.908 -07 000000569 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:33:44.908 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.839 mm, average velocity = 2.184 mm/sec
17-03-17 19:33:45.858 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:45.858 -07 000000478 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:33:45.868 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:45.868 -07 000000569 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:45.888 -07 000000569 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:33:45.888 -07 000000569 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:33:45.888 -07 000000569 INF: Y Motor: Moved to 62.3955 after 1436 ms (table move)
17-03-17 19:33:45.888 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139606 mm (DAC = 30497)
17-03-17 19:33:45.888 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:45.888 -07 000000501 INF: FPGA: Recv ZSGSRD 31026
17-03-17 19:33:45.898 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:33:45.898 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:45.898 -07 000000627 INF: FPGA: Recv ZSGSRD 31025
17-03-17 19:33:45.908 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:45.908 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:45.908 -07 000000608 INF: FPGA: Recv ZSGSRD 31012
17-03-17 19:33:45.918 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:45.918 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:45.918 -07 000000482 INF: FPGA: Recv ZSGSRD 31018
17-03-17 19:33:45.928 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:45.928 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:45.928 -07 000000541 INF: FPGA: Recv ZSGSRD 31018
17-03-17 19:33:45.938 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:45.938 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:45.938 -07 000000502 INF: FPGA: Recv ZSGSRD 31020
17-03-17 19:33:45.948 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:45.948 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:45.948 -07 000000012 INF: FPGA: Recv ZSGSRD 31031
17-03-17 19:33:45.958 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:45.958 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:45.958 -07 000000627 INF: FPGA: Recv ZSGSRD 31021
17-03-17 19:33:45.968 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:45.968 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:45.968 -07 000000482 INF: FPGA: Recv ZSGSRD 31028
17-03-17 19:33:45.978 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:45.978 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:45.978 -07 000000626 INF: FPGA: Recv ZSGSRD 31020
17-03-17 19:33:45.988 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:45.988 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:45.988 -07 000000429 INF: FPGA: Recv ZPIEZORD 26926
17-03-17 19:33:45.998 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:45.998 -07 000000475 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.654 V. Piezo Error = -9.0 V.
17-03-17 19:33:45.998 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31022 (-138.8 uncal um), Error = 0.8 uncal um, Median = 31020 (-138.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 31012 (-138.7 uncal um), Max = 31031 (-138.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:33:45.998 -07 000000475 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31022, posNoise = 9, negNoise = 10
17-03-17 19:33:45.998 -07 000000475 INF: Z Motor: After move to -0.139606, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:45.998 -07 000000475 INF: Z Motor: Settle wait time = 1442 ms, measure time = 105 ms (allowed 150 ms), total time = 1547 ms
17-03-17 19:33:45.998 -07 000000475 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:33:46.048 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 19:33:46.048 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:33:46.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:46.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:46.048 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:46.048 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:46.048 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:33:46.048 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:46.048 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:33:46.058 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:33:46.058 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:33:46.058 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:33:46.068 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:33:46.068 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:33:46.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:33:46.118 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:33:46.318 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:33:46.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:33:46.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:33:46.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130575688, 0x0, 559484976) start.
17-03-17 19:33:46.348 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:33:46.358 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 19:33:46.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:33:46.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130575688, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 19:33:46.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:46.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:33:46.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 19:33:46.458 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:46.458 -07 000000551 INF: Autofocus start
17-03-17 19:33:46.458 -07 000000551 INF: MeasureProfile start
17-03-17 19:33:46.458 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:46.468 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:33:46.468 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:33:46.468 -07 000000551 INF: MeasureProfile done
17-03-17 19:33:46.468 -07 000000551 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:33:46.468 -07 000000551 INF: Autofocus finished
17-03-17 19:33:46.668 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:33:46.668 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:33:46.668 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139615261072843. ----------
17-03-17 19:33:46.678 -07 000000610 INF: Cycle	27	Tile	4	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:33:46.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29004, sync = True, waitForSettling = True)
17-03-17 19:33:46.678 -07 000000610 INF: Z Motor: Moving to -0.132772 mm, started at -0.139615 mm, distance = 6.84 um
17-03-17 19:33:46.678 -07 000000610 INF: FPGA: Xmit ZDACW 29004\n [Z Motor]
17-03-17 19:33:46.678 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:33:46.688 -07 000000610 INF: FPGA: 'ZDACW 29004' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:33:46.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:46.688 -07 000000569 INF: FPGA: Recv ZDACR 29004
17-03-17 19:33:46.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:46.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:33:46.698 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:33:46.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:33:46.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:46.848 -07 000000593 INF: FPGA: Recv ZSGSRD 29962
17-03-17 19:33:46.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:46.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:46.858 -07 000000012 INF: FPGA: Recv ZSGSRD 29955
17-03-17 19:33:46.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:46.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:46.868 -07 000000478 INF: FPGA: Recv ZSGSRD 29961
17-03-17 19:33:46.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:46.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:46.878 -07 000000462 INF: FPGA: Recv ZSGSRD 29957
17-03-17 19:33:46.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:46.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:46.888 -07 000000569 INF: FPGA: Recv ZSGSRD 29952
17-03-17 19:33:46.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:46.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:46.898 -07 000000608 INF: FPGA: Recv ZSGSRD 29960
17-03-17 19:33:46.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:46.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:46.908 -07 000000541 INF: FPGA: Recv ZSGSRD 29958
17-03-17 19:33:46.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:46.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:46.918 -07 000000551 INF: FPGA: Recv ZSGSRD 29960
17-03-17 19:33:46.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:46.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:46.928 -07 000000438 INF: FPGA: Recv ZSGSRD 29955
17-03-17 19:33:46.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:46.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:46.938 -07 000000501 INF: FPGA: Recv ZSGSRD 29954
17-03-17 19:33:46.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:46.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:46.948 -07 000000593 INF: FPGA: Recv ZPIEZORD 25582
17-03-17 19:33:46.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:46.958 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.426 V. Piezo Error = -9.6 V.
17-03-17 19:33:46.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29957 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29958 (-132.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29952 (-132.0 uncal um), Max = 29962 (-132.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:33:46.958 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29957, posNoise = 5, negNoise = 5
17-03-17 19:33:46.958 -07 000000610 INF: Z Motor: After move to -0.132772, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:46.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:33:46.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:46.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:46.958 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:46.958 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:46.958 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:33:46.958 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:46.958 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:33:46.958 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:33:46.958 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:33:46.958 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:33:46.958 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:33:46.958 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:33:46.968 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:33:46.968 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:33:46.968 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:33:46.968 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:33:46.968 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:33:46.968 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:33:46.978 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:33:46.978 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:33:46.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 29181 150\n [Camera]
17-03-17 19:33:47.178 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:33:47.578 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:33:47.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:33:47.578 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:47.578 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:47.578 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:33:47.578 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:33:47.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:33:47.578 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:47.588 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:47.588 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:33:47.768 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29181 787
17-03-17 19:33:47.918 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:33:47.958 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:33:47.958 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:33:47.958 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:47.958 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:33:47.958 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:33:47.958 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:47.968 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:47.968 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:47.968 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:33:47.968 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:33:48.118 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:33:48.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:33:48.118 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:48.228 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:33:48.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:33:48.228 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:48.228 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:48.228 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 19:33:48.238 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:48.238 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:33:48.308 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:33:48.308 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:33:48.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 29181 150' command took 2 ms to send, 1324 ms to get response, and 1330 ms overall
17-03-17 19:33:48.318 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:33:48.318 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132773475141868. ------
17-03-17 19:33:48.318 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:48.318 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13914 mm
17-03-17 19:33:48.328 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:33:48.328 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:33:48.328 -07 000000482 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 19:33:48.328 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:48.328 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 6 ms to get response, and 7 ms overall
17-03-17 19:33:48.328 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30396, sync = True, waitForSettling = False)
17-03-17 19:33:48.328 -07 000000627 INF: Z Motor: Moving to -0.139144 mm, started at -0.132773 mm, distance = -6.37 um
17-03-17 19:33:48.338 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:48.338 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.030322,
17-03-17 19:33:48.338 -07 000000626 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:33:48.348 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:33:48.348 -07 000000482 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:48.348 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:33:48.348 -07 000000482 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:33:48.348 -07 000000482 INF: Y Motor: Moving 1339 steps-15
17-03-17 19:33:48.358 -07 000000627 INF: FPGA: Xmit ZDACW 30396\n [Z Motor]
17-03-17 19:33:48.358 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:33:48.368 -07 000000627 INF: FPGA: 'ZDACW 30396' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 19:33:48.378 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:33:48.388 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:48.388 -07 000000502 INF: FPGA: Recv ZDACR 30396
17-03-17 19:33:48.398 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:33:48.398 -07 000000627 INF: Z Motor: MoveAbsStepped took 63 ms (did NOT wait for settling yet))
17-03-17 19:33:48.548 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:33:48.548 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 216 ms overall
17-03-17 19:33:48.618 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:33:48.618 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:33:48.618 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:48.618 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:33:48.628 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:33:48.628 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:33:48.628 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:48.628 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:33:48.628 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:33:48.628 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-17 19:33:48.748 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 19:33:48.748 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 403 ms overall
17-03-17 19:33:48.788 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:48.788 -07 000000431 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:33:48.798 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:33:48.798 -07 000000482 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:48.798 -07 000000482 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:33:48.798 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 403 ms, distance = 0.837 mm, average velocity = 2.077 mm/sec
17-03-17 19:33:49.748 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:49.748 -07 000000627 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:33:49.758 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:49.758 -07 000000482 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:49.778 -07 000000482 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:33:49.778 -07 000000482 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:33:49.778 -07 000000482 INF: Y Motor: Moved to 63.2241 after 1446 ms (table move)
17-03-17 19:33:49.778 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139144 mm (DAC = 30396)
17-03-17 19:33:49.778 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:49.778 -07 000000475 INF: FPGA: Recv ZSGSRD 30951
17-03-17 19:33:49.788 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:33:49.788 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:49.788 -07 000000431 INF: FPGA: Recv ZSGSRD 30944
17-03-17 19:33:49.798 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:49.798 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:49.798 -07 000000512 INF: FPGA: Recv ZSGSRD 30952
17-03-17 19:33:49.808 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:49.808 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:49.808 -07 000000569 INF: FPGA: Recv ZSGSRD 30954
17-03-17 19:33:49.818 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:49.818 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:49.818 -07 000000608 INF: FPGA: Recv ZSGSRD 30955
17-03-17 19:33:49.828 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:49.828 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:49.828 -07 000000429 INF: FPGA: Recv ZSGSRD 30941
17-03-17 19:33:49.838 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:49.838 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:49.838 -07 000000627 INF: FPGA: Recv ZSGSRD 30949
17-03-17 19:33:49.848 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:49.848 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:49.848 -07 000000626 INF: FPGA: Recv ZSGSRD 30945
17-03-17 19:33:49.858 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:49.858 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:49.858 -07 000000475 INF: FPGA: Recv ZSGSRD 30945
17-03-17 19:33:49.868 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:49.868 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:49.868 -07 000000593 INF: FPGA: Recv ZSGSRD 30947
17-03-17 19:33:49.878 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:49.878 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:49.878 -07 000000627 INF: FPGA: Recv ZPIEZORD 26884
17-03-17 19:33:49.888 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:49.888 -07 000000462 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.638 V. Piezo Error = -9.0 V.
17-03-17 19:33:49.888 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30948 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30948 (-138.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30941 (-138.3 uncal um), Max = 30955 (-138.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:33:49.888 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30948, posNoise = 7, negNoise = 7
17-03-17 19:33:49.888 -07 000000462 INF: Z Motor: After move to -0.139144, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:49.888 -07 000000462 INF: Z Motor: Settle wait time = 1448 ms, measure time = 105 ms (allowed 150 ms), total time = 1553 ms
17-03-17 19:33:49.888 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:33:49.938 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 19:33:49.938 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:33:49.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:49.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:49.938 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:49.938 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:49.938 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:33:49.938 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:49.938 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:33:49.938 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:33:49.948 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:33:49.948 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:33:49.948 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:33:49.948 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:33:49.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:33:49.998 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:33:50.198 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:33:50.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:33:50.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:33:50.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 19:33:50.238 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:33:50.238 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 19:33:50.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 19:33:50.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:33:50.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:50.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:33:50.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:33:50.338 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:50.338 -07 000000561 INF: Autofocus start
17-03-17 19:33:50.338 -07 000000561 INF: MeasureProfile start
17-03-17 19:33:50.338 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:50.348 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:33:50.348 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:33:50.348 -07 000000561 INF: MeasureProfile done
17-03-17 19:33:50.348 -07 000000561 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:33:50.348 -07 000000561 INF: Autofocus finished
17-03-17 19:33:50.548 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:33:50.548 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:33:50.548 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.139139869374353. ----------
17-03-17 19:33:50.548 -07 000000610 INF: Cycle	27	Tile	5	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:33:50.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28891, sync = True, waitForSettling = True)
17-03-17 19:33:50.558 -07 000000610 INF: Z Motor: Moving to -0.132255 mm, started at -0.139140 mm, distance = 6.89 um
17-03-17 19:33:50.558 -07 000000610 INF: FPGA: Xmit ZDACW 28891\n [Z Motor]
17-03-17 19:33:50.558 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:33:50.568 -07 000000610 INF: FPGA: 'ZDACW 28891' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:33:50.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:50.568 -07 000000438 INF: FPGA: Recv ZDACR 28891
17-03-17 19:33:50.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:50.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:33:50.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:50.728 -07 000000551 INF: FPGA: Recv ZSGSRD 29874
17-03-17 19:33:50.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:50.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:50.738 -07 000000429 INF: FPGA: Recv ZSGSRD 29881
17-03-17 19:33:50.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:50.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:50.748 -07 000000502 INF: FPGA: Recv ZSGSRD 29877
17-03-17 19:33:50.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:50.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:50.758 -07 000000501 INF: FPGA: Recv ZSGSRD 29878
17-03-17 19:33:50.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:50.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:50.768 -07 000000561 INF: FPGA: Recv ZSGSRD 29877
17-03-17 19:33:50.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:50.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:50.778 -07 000000551 INF: FPGA: Recv ZSGSRD 29879
17-03-17 19:33:50.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:50.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:50.788 -07 000000429 INF: FPGA: Recv ZSGSRD 29876
17-03-17 19:33:50.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:50.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:50.798 -07 000000438 INF: FPGA: Recv ZSGSRD 29878
17-03-17 19:33:50.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:50.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:50.808 -07 000000608 INF: FPGA: Recv ZSGSRD 29874
17-03-17 19:33:50.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:50.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:50.818 -07 000000561 INF: FPGA: Recv ZSGSRD 29879
17-03-17 19:33:50.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:50.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:50.828 -07 000000512 INF: FPGA: Recv ZPIEZORD 25481
17-03-17 19:33:50.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:50.838 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -9.7 V.
17-03-17 19:33:50.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29877 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29878 (-131.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29874 (-131.5 uncal um), Max = 29881 (-131.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:33:50.838 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29877, posNoise = 4, negNoise = 3
17-03-17 19:33:50.838 -07 000000610 INF: Z Motor: After move to -0.132255, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:50.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:33:50.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:50.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:50.838 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:50.838 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:50.838 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:33:50.838 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:50.838 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:33:50.838 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:33:50.838 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:33:50.838 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:33:50.838 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:33:50.838 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:33:50.848 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:33:50.848 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:33:50.848 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:33:50.848 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:33:50.858 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:33:50.858 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:33:50.858 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:33:50.868 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:33:50.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 29067 150\n [Camera]
17-03-17 19:33:51.068 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:33:51.468 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:33:51.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:33:51.468 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:51.468 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:33:51.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:33:51.468 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:51.468 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:51.468 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-17 19:33:51.478 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:51.478 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) start.
17-03-17 19:33:51.658 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29067 787
17-03-17 19:33:51.698 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:33:51.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:33:51.808 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:33:51.848 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:33:51.848 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:33:51.848 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:51.848 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:33:51.848 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:33:51.848 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:51.858 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:51.858 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:33:51.858 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:51.868 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:33:51.998 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:33:51.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:33:52.008 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:52.108 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:33:52.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:33:52.118 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:52.118 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:52.118 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:52.118 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:33:52.118 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) start.
17-03-17 19:33:52.198 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:33:52.198 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:33:52.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 29067 150' command took 4 ms to send, 1321 ms to get response, and 1329 ms overall
17-03-17 19:33:52.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:33:52.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132259538170527. ------
17-03-17 19:33:52.198 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:52.198 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13874 mm
17-03-17 19:33:52.198 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:33:52.198 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:33:52.198 -07 000000475 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 19:33:52.198 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30308, sync = True, waitForSettling = False)
17-03-17 19:33:52.198 -07 000000012 INF: Z Motor: Moving to -0.138741 mm, started at -0.132260 mm, distance = -6.48 um
17-03-17 19:33:52.198 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:52.208 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:33:52.208 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:52.208 -07 000000502 INF: FPGA: Recv YRDPOS 129484
17-03-17 19:33:52.218 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:33:52.218 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:52.218 -07 000000475 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:52.218 -07 000000475 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:33:52.218 -07 000000475 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:33:52.228 -07 000000012 INF: FPGA: Xmit ZDACW 30308\n [Z Motor]
17-03-17 19:33:52.228 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:33:52.238 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:33:52.238 -07 000000012 INF: FPGA: 'ZDACW 30308' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:33:52.248 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:52.248 -07 000000593 INF: FPGA: Recv ZDACR 30308
17-03-17 19:33:52.258 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:33:52.258 -07 000000012 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 19:33:52.418 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:33:52.418 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 19:33:52.518 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:33:52.518 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:33:52.518 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:52.518 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:33:52.518 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:33:52.518 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:52.518 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:52.518 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:52.518 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-17 19:33:52.528 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:33:52.608 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:33:52.608 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:33:52.648 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:52.648 -07 000000593 INF: FPGA: Recv YRDPOS 131188
17-03-17 19:33:52.658 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:33:52.658 -07 000000475 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:52.658 -07 000000475 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 19:33:52.658 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.134 mm/sec
17-03-17 19:33:53.608 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:53.608 -07 000000561 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:33:53.618 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:53.618 -07 000000475 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:53.628 -07 000000475 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:33:53.628 -07 000000475 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:33:53.628 -07 000000475 INF: Y Motor: Moved to 64.0571 after 1430 ms (table move)
17-03-17 19:33:53.638 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138741 mm (DAC = 30308)
17-03-17 19:33:53.638 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:53.638 -07 000000475 INF: FPGA: Recv ZSGSRD 30890
17-03-17 19:33:53.648 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:33:53.648 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:53.648 -07 000000593 INF: FPGA: Recv ZSGSRD 30891
17-03-17 19:33:53.658 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:53.658 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:53.658 -07 000000478 INF: FPGA: Recv ZSGSRD 30889
17-03-17 19:33:53.668 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:53.668 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:53.668 -07 000000627 INF: FPGA: Recv ZSGSRD 30891
17-03-17 19:33:53.678 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:53.678 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:53.678 -07 000000512 INF: FPGA: Recv ZSGSRD 30890
17-03-17 19:33:53.688 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:53.698 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:53.698 -07 000000551 INF: FPGA: Recv ZSGSRD 30888
17-03-17 19:33:53.708 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:33:53.708 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:53.708 -07 000000608 INF: FPGA: Recv ZSGSRD 30885
17-03-17 19:33:53.718 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:53.718 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:53.718 -07 000000627 INF: FPGA: Recv ZSGSRD 30880
17-03-17 19:33:53.728 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:53.728 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:53.728 -07 000000569 INF: FPGA: Recv ZSGSRD 30889
17-03-17 19:33:53.738 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:53.748 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:53.748 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.011254,
17-03-17 19:33:53.748 -07 000000593 INF: FPGA: Recv ZSGSRD 30893
17-03-17 19:33:53.758 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:33:53.768 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:53.768 -07 000000429 INF: FPGA: Recv ZPIEZORD 26848
17-03-17 19:33:53.778 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:33:53.778 -07 000000501 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.625 V. Piezo Error = -8.9 V.
17-03-17 19:33:53.778 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30889 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30890 (-138.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30880 (-137.9 uncal um), Max = 30893 (-138.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:33:53.778 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30889, posNoise = 4, negNoise = 9
17-03-17 19:33:53.778 -07 000000501 INF: Z Motor: After move to -0.138741, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:53.778 -07 000000501 INF: Z Motor: Settle wait time = 1433 ms, measure time = 138 ms (allowed 150 ms), total time = 1571 ms
17-03-17 19:33:53.778 -07 000000501 INF: Z Motor: Waiting extra 12 ms after reading position to reach expected total of 150 ms
17-03-17 19:33:53.798 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 19:33:53.798 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:33:53.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:53.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:53.798 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:53.798 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:53.798 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:33:53.798 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:53.798 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:33:53.798 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:33:53.808 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:33:53.808 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:33:53.818 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:33:53.818 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 19:33:53.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:33:53.858 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:33:54.058 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:33:54.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:33:54.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:33:54.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2617114384, 0x0, 559484976) start.
17-03-17 19:33:54.098 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:33:54.098 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 19:33:54.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 19:33:54.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2617114384, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:33:54.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:54.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:33:54.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:33:54.298 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:54.298 -07 000000551 INF: Autofocus start
17-03-17 19:33:54.298 -07 000000551 INF: MeasureProfile start
17-03-17 19:33:54.298 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:54.308 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:33:54.308 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:33:54.308 -07 000000551 INF: MeasureProfile done
17-03-17 19:33:54.308 -07 000000551 INF: X=3  Z correction [um]=-0.009517147
17-03-17 19:33:54.308 -07 000000551 INF: Autofocus finished
17-03-17 19:33:54.508 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:33:54.508 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:33:54.508 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138760840857989. ----------
17-03-17 19:33:54.508 -07 000000610 INF: Cycle	27	Tile	6	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:33:54.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28819, sync = True, waitForSettling = True)
17-03-17 19:33:54.518 -07 000000610 INF: Z Motor: Moving to -0.131925 mm, started at -0.138761 mm, distance = 6.84 um
17-03-17 19:33:54.518 -07 000000610 INF: FPGA: Xmit ZDACW 28819\n [Z Motor]
17-03-17 19:33:54.518 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:33:54.528 -07 000000610 INF: FPGA: 'ZDACW 28819' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:33:54.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:54.528 -07 000000475 INF: FPGA: Recv ZDACR 28819
17-03-17 19:33:54.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:54.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:33:54.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:54.688 -07 000000012 INF: FPGA: Recv ZSGSRD 29823
17-03-17 19:33:54.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:54.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:54.698 -07 000000551 INF: FPGA: Recv ZSGSRD 29825
17-03-17 19:33:54.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:54.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:54.708 -07 000000561 INF: FPGA: Recv ZSGSRD 29828
17-03-17 19:33:54.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:54.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:54.718 -07 000000626 INF: FPGA: Recv ZSGSRD 29825
17-03-17 19:33:54.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:54.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:54.728 -07 000000569 INF: FPGA: Recv ZSGSRD 29828
17-03-17 19:33:54.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:54.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:54.738 -07 000000012 INF: FPGA: Recv ZSGSRD 29827
17-03-17 19:33:54.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:54.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:54.748 -07 000000502 INF: FPGA: Recv ZSGSRD 29830
17-03-17 19:33:54.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:54.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:54.758 -07 000000478 INF: FPGA: Recv ZSGSRD 29825
17-03-17 19:33:54.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:54.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:54.768 -07 000000593 INF: FPGA: Recv ZSGSRD 29820
17-03-17 19:33:54.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:54.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:54.778 -07 000000462 INF: FPGA: Recv ZSGSRD 29822
17-03-17 19:33:54.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:54.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:54.788 -07 000000475 INF: FPGA: Recv ZPIEZORD 25458
17-03-17 19:33:54.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:54.798 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -9.6 V.
17-03-17 19:33:54.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29825 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29825 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29820 (-131.1 uncal um), Max = 29830 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:33:54.798 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29825, posNoise = 5, negNoise = 5
17-03-17 19:33:54.798 -07 000000610 INF: Z Motor: After move to -0.131925, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:54.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:33:54.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:54.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:54.798 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:54.798 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:54.798 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:33:54.798 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:54.798 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:33:54.798 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:33:54.798 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:33:54.798 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:33:54.798 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:33:54.798 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:33:54.808 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:33:54.808 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:33:54.808 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:33:54.808 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:33:54.808 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:33:54.808 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:33:54.818 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:33:54.818 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:33:54.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28995 150\n [Camera]
17-03-17 19:33:55.018 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:33:55.418 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:33:55.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:33:55.418 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:55.418 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:33:55.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:33:55.418 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:55.428 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:55.428 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:33:55.428 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:55.428 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:33:55.608 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28995 787
17-03-17 19:33:55.758 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:33:55.808 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:33:55.808 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:33:55.808 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:55.808 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:33:55.808 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:33:55.918 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 487 ms.
17-03-17 19:33:55.918 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 488 ms.
17-03-17 19:33:55.918 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:55.918 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:33:55.928 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-17 19:33:55.948 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:33:55.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:33:55.958 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:55.958 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:33:55.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:33:55.958 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:55.958 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:55.968 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:33:55.968 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:55.968 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:33:56.148 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:33:56.148 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:33:56.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28995 150' command took 2 ms to send, 1322 ms to get response, and 1329 ms overall
17-03-17 19:33:56.148 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:33:56.148 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131925479139156. ------
17-03-17 19:33:56.148 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13845 mm
17-03-17 19:33:56.148 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:33:56.148 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:56.158 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:56.158 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:33:56.158 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:33:56.158 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30245, sync = True, waitForSettling = False)
17-03-17 19:33:56.158 -07 000000593 INF: Z Motor: Moving to -0.138453 mm, started at -0.131925 mm, distance = -6.53 um
17-03-17 19:33:56.158 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:33:56.158 -07 000000512 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 19:33:56.168 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:56.168 -07 000000478 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:33:56.178 -07 000000593 INF: FPGA: Xmit ZDACW 30245\n [Z Motor]
17-03-17 19:33:56.178 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:33:56.178 -07 000000512 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:56.178 -07 000000512 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:33:56.178 -07 000000512 INF: Y Motor: Moving 1337 steps-12
17-03-17 19:33:56.178 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:33:56.188 -07 000000593 INF: FPGA: 'ZDACW 30245' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:33:56.188 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:56.188 -07 000000627 INF: FPGA: Recv ZDACR 30245
17-03-17 19:33:56.198 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:33:56.198 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:56.198 -07 000000593 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 19:33:56.338 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:33:56.338 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:33:56.338 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:56.348 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:33:56.348 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:33:56.348 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:56.348 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:56.348 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:33:56.348 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:33:56.348 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:33:56.358 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:33:56.358 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:33:56.568 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 19:33:56.568 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:33:56.608 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:56.608 -07 000000626 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:33:56.618 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:56.618 -07 000000512 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:56.618 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:33:56.618 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 19:33:56.698 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:33:56.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:33:57.568 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:33:57.568 -07 000000561 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:33:57.578 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:57.578 -07 000000512 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:33:57.598 -07 000000512 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:33:57.598 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:33:57.598 -07 000000512 INF: Y Motor: Moved to 64.8789 after 1438 ms (table move)
17-03-17 19:33:57.598 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138453 mm (DAC = 30245)
17-03-17 19:33:57.598 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:57.598 -07 000000482 INF: FPGA: Recv ZSGSRD 30841
17-03-17 19:33:57.608 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:33:57.608 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:57.608 -07 000000593 INF: FPGA: Recv ZSGSRD 30832
17-03-17 19:33:57.618 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:57.618 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:57.618 -07 000000431 INF: FPGA: Recv ZSGSRD 30847
17-03-17 19:33:57.628 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:57.628 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:57.628 -07 000000569 INF: FPGA: Recv ZSGSRD 30840
17-03-17 19:33:57.638 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:57.638 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:57.638 -07 000000429 INF: FPGA: Recv ZSGSRD 30843
17-03-17 19:33:57.648 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:57.648 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:57.648 -07 000000561 INF: FPGA: Recv ZSGSRD 30854
17-03-17 19:33:57.658 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:57.658 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:57.658 -07 000000431 INF: FPGA: Recv ZSGSRD 30843
17-03-17 19:33:57.668 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:57.668 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:57.668 -07 000000569 INF: FPGA: Recv ZSGSRD 30837
17-03-17 19:33:57.678 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:57.678 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:57.678 -07 000000012 INF: FPGA: Recv ZSGSRD 30838
17-03-17 19:33:57.688 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:57.688 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:57.688 -07 000000627 INF: FPGA: Recv ZSGSRD 30836
17-03-17 19:33:57.698 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:57.698 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:57.698 -07 000000501 INF: FPGA: Recv ZPIEZORD 26828
17-03-17 19:33:57.708 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:57.708 -07 000000462 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.615 V. Piezo Error = -8.8 V.
17-03-17 19:33:57.708 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30841 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30840 (-137.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 30832 (-137.6 uncal um), Max = 30854 (-137.7 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:33:57.708 -07 000000462 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30841, posNoise = 13, negNoise = 9
17-03-17 19:33:57.708 -07 000000462 INF: Z Motor: After move to -0.138453, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:57.708 -07 000000462 INF: Z Motor: Settle wait time = 1441 ms, measure time = 106 ms (allowed 150 ms), total time = 1547 ms
17-03-17 19:33:57.708 -07 000000462 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:33:57.758 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 19:33:57.758 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:33:57.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:57.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:57.758 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:57.758 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:57.758 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:33:57.758 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:57.758 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:33:57.758 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:33:57.768 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:33:57.768 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:33:57.768 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:33:57.768 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:33:57.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:33:57.818 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:33:58.018 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:33:58.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:33:58.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:33:58.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:33:58.058 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:33:58.058 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 19:33:58.058 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 19:33:58.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:33:58.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:58.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:33:58.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:33:58.158 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:33:58.158 -07 000000501 INF: Autofocus start
17-03-17 19:33:58.158 -07 000000501 INF: MeasureProfile start
17-03-17 19:33:58.158 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:33:58.168 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:33:58.168 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:33:58.168 -07 000000501 INF: MeasureProfile done
17-03-17 19:33:58.168 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:33:58.168 -07 000000501 INF: Autofocus finished
17-03-17 19:33:58.368 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:33:58.368 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:33:58.368 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.138452478675185. ----------
17-03-17 19:33:58.368 -07 000000610 INF: Cycle	27	Tile	7	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:33:58.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28769, sync = True, waitForSettling = True)
17-03-17 19:33:58.378 -07 000000610 INF: Z Motor: Moving to -0.131696 mm, started at -0.138452 mm, distance = 6.76 um
17-03-17 19:33:58.378 -07 000000610 INF: FPGA: Xmit ZDACW 28769\n [Z Motor]
17-03-17 19:33:58.378 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 19:33:58.388 -07 000000610 INF: FPGA: 'ZDACW 28769' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:58.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:33:58.388 -07 000000608 INF: FPGA: Recv ZDACR 28769
17-03-17 19:33:58.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:58.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:33:58.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:58.548 -07 000000626 INF: FPGA: Recv ZSGSRD 29794
17-03-17 19:33:58.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:33:58.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:58.558 -07 000000501 INF: FPGA: Recv ZSGSRD 29789
17-03-17 19:33:58.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:58.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:58.568 -07 000000551 INF: FPGA: Recv ZSGSRD 29790
17-03-17 19:33:58.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:58.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:58.578 -07 000000593 INF: FPGA: Recv ZSGSRD 29792
17-03-17 19:33:58.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:58.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:58.588 -07 000000608 INF: FPGA: Recv ZSGSRD 29788
17-03-17 19:33:58.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:58.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:58.598 -07 000000482 INF: FPGA: Recv ZSGSRD 29794
17-03-17 19:33:58.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:58.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:58.608 -07 000000512 INF: FPGA: Recv ZSGSRD 29784
17-03-17 19:33:58.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:58.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:58.618 -07 000000431 INF: FPGA: Recv ZSGSRD 29790
17-03-17 19:33:58.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:58.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:58.628 -07 000000569 INF: FPGA: Recv ZSGSRD 29790
17-03-17 19:33:58.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:58.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:33:58.638 -07 000000608 INF: FPGA: Recv ZSGSRD 29790
17-03-17 19:33:58.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:33:58.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:33:58.648 -07 000000438 INF: FPGA: Recv ZPIEZORD 25454
17-03-17 19:33:58.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:33:58.658 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.5 V.
17-03-17 19:33:58.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29790 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29790 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29784 (-130.9 uncal um), Max = 29794 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:33:58.658 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29790, posNoise = 4, negNoise = 6
17-03-17 19:33:58.658 -07 000000610 INF: Z Motor: After move to -0.131696, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:33:58.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:33:58.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:33:58.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:33:58.658 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:33:58.658 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:33:58.658 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:33:58.658 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:33:58.658 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:33:58.658 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:33:58.658 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:33:58.658 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:33:58.658 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:33:58.658 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:33:58.658 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:33:58.658 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:33:58.668 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:33:58.668 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:33:58.668 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:33:58.668 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:33:58.668 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:33:58.668 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:33:58.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28946 150\n [Camera]
17-03-17 19:33:58.868 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:33:59.128 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.019446,
17-03-17 19:33:59.278 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:33:59.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:33:59.278 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:59.278 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:33:59.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:33:59.278 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:59.278 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:59.278 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:33:59.288 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:59.288 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1059196976, 0x0, 418435064) start.
17-03-17 19:33:59.468 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28946 787
17-03-17 19:33:59.618 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:33:59.658 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1059196976, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:33:59.658 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:33:59.658 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:33:59.658 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:59.658 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:33:59.658 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:33:59.668 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:59.668 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:33:59.668 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:33:59.668 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:33:59.808 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:33:59.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:33:59.808 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:33:59.818 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:33:59.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:33:59.818 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:33:59.818 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:33:59.818 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:33:59.818 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:33:59.818 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1094619240, 0x0, 391868352) start.
17-03-17 19:33:59.998 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:34:00.008 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:34:00.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28946 150' command took 2 ms to send, 1320 ms to get response, and 1329 ms overall
17-03-17 19:34:00.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:34:00.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131700631714194. ------
17-03-17 19:34:00.008 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:00.008 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13836 mm
17-03-17 19:34:00.008 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:34:00.008 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:34:00.008 -07 000000438 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 19:34:00.008 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30226, sync = True, waitForSettling = False)
17-03-17 19:34:00.008 -07 000000569 INF: Z Motor: Moving to -0.138366 mm, started at -0.131701 mm, distance = -6.67 um
17-03-17 19:34:00.008 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:00.018 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:34:00.018 -07 000000569 INF: FPGA: Xmit ZDACW 30226\n [Z Motor]
17-03-17 19:34:00.018 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:34:00.028 -07 000000569 INF: FPGA: 'ZDACW 30226' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:00.028 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:34:00.038 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:00.038 -07 000000482 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:34:00.048 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:00.048 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:34:00.048 -07 000000438 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:00.048 -07 000000626 INF: FPGA: Recv ZDACR 30226
17-03-17 19:34:00.048 -07 000000438 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:34:00.048 -07 000000438 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:34:00.058 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:34:00.058 -07 000000569 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 19:34:00.058 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:34:00.198 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 19:34:00.198 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:34:00.198 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:00.208 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:34:00.208 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1094619240, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:34:00.208 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:34:00.208 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:00.218 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:34:00.218 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:34:00.218 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:34:00.228 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:34:00.228 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 19:34:00.438 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 19:34:00.438 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 386 ms overall
17-03-17 19:34:00.468 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:00.468 -07 000000502 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:34:00.478 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:34:00.478 -07 000000438 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:00.478 -07 000000438 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:34:00.478 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.186 mm/sec
17-03-17 19:34:01.428 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:01.428 -07 000000626 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:34:01.438 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:01.438 -07 000000438 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:01.458 -07 000000438 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:34:01.458 -07 000000438 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:34:01.458 -07 000000438 INF: Y Motor: Moved to 65.7144 after 1443 ms (table move)
17-03-17 19:34:01.458 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138366 mm (DAC = 30226)
17-03-17 19:34:01.458 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:01.468 -07 000000593 INF: FPGA: Recv ZSGSRD 30826
17-03-17 19:34:01.468 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:34:01.468 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:01.468 -07 000000626 INF: FPGA: Recv ZSGSRD 30835
17-03-17 19:34:01.478 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:01.478 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:01.478 -07 000000501 INF: FPGA: Recv ZSGSRD 30831
17-03-17 19:34:01.488 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:01.488 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:01.488 -07 000000482 INF: FPGA: Recv ZSGSRD 30822
17-03-17 19:34:01.498 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:01.498 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:01.498 -07 000000593 INF: FPGA: Recv ZSGSRD 30826
17-03-17 19:34:01.508 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:01.508 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:01.508 -07 000000438 INF: FPGA: Recv ZSGSRD 30824
17-03-17 19:34:01.518 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:01.518 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:01.518 -07 000000429 INF: FPGA: Recv ZSGSRD 30822
17-03-17 19:34:01.528 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:01.528 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:01.528 -07 000000478 INF: FPGA: Recv ZSGSRD 30833
17-03-17 19:34:01.538 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:01.538 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:01.538 -07 000000593 INF: FPGA: Recv ZSGSRD 30837
17-03-17 19:34:01.548 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:01.548 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:01.548 -07 000000501 INF: FPGA: Recv ZSGSRD 30829
17-03-17 19:34:01.558 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:01.558 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:01.558 -07 000000431 INF: FPGA: Recv ZPIEZORD 26826
17-03-17 19:34:01.568 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:01.568 -07 000000608 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.612 V. Piezo Error = -8.8 V.
17-03-17 19:34:01.568 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30828 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30828 (-137.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30822 (-137.5 uncal um), Max = 30837 (-137.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:34:01.568 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30828, posNoise = 9, negNoise = 6
17-03-17 19:34:01.568 -07 000000608 INF: Z Motor: After move to -0.138366, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:01.568 -07 000000608 INF: Z Motor: Settle wait time = 1447 ms, measure time = 104 ms (allowed 150 ms), total time = 1551 ms
17-03-17 19:34:01.568 -07 000000608 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:34:01.618 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 19:34:01.618 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:34:01.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:01.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:01.618 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:01.618 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:01.618 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:34:01.618 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:01.618 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:01.618 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:34:01.628 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:34:01.628 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:34:01.638 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:34:01.638 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:34:01.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:34:01.688 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:34:01.698 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:34:01.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:34:01.888 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:34:01.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:34:01.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:34:01.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 19:34:01.928 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:34:01.928 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 19:34:01.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 19:34:02.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:34:02.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:02.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:34:02.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:34:02.028 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:02.028 -07 000000012 INF: Autofocus start
17-03-17 19:34:02.028 -07 000000012 INF: MeasureProfile start
17-03-17 19:34:02.028 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:02.038 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:34:02.038 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:34:02.038 -07 000000012 INF: MeasureProfile done
17-03-17 19:34:02.038 -07 000000012 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:34:02.038 -07 000000012 INF: Autofocus finished
17-03-17 19:34:02.238 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:34:02.238 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:34:02.238 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138368963917342. ----------
17-03-17 19:34:02.248 -07 000000610 INF: Cycle	27	Tile	8	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:34:02.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28750, sync = True, waitForSettling = True)
17-03-17 19:34:02.248 -07 000000610 INF: Z Motor: Moving to -0.131609 mm, started at -0.138369 mm, distance = 6.76 um
17-03-17 19:34:02.248 -07 000000610 INF: FPGA: Xmit ZDACW 28750\n [Z Motor]
17-03-17 19:34:02.248 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 19:34:02.258 -07 000000610 INF: FPGA: 'ZDACW 28750' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:34:02.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:02.258 -07 000000626 INF: FPGA: Recv ZDACR 28750
17-03-17 19:34:02.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:02.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:34:02.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:02.418 -07 000000608 INF: FPGA: Recv ZSGSRD 29779
17-03-17 19:34:02.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:02.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:02.428 -07 000000512 INF: FPGA: Recv ZSGSRD 29776
17-03-17 19:34:02.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:02.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:02.438 -07 000000561 INF: FPGA: Recv ZSGSRD 29778
17-03-17 19:34:02.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:02.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:02.448 -07 000000431 INF: FPGA: Recv ZSGSRD 29773
17-03-17 19:34:02.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:02.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:02.458 -07 000000593 INF: FPGA: Recv ZSGSRD 29776
17-03-17 19:34:02.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:02.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:02.468 -07 000000608 INF: FPGA: Recv ZSGSRD 29783
17-03-17 19:34:02.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:02.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:02.478 -07 000000475 INF: FPGA: Recv ZSGSRD 29780
17-03-17 19:34:02.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:02.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:02.488 -07 000000482 INF: FPGA: Recv ZSGSRD 29774
17-03-17 19:34:02.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:02.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:02.498 -07 000000438 INF: FPGA: Recv ZSGSRD 29775
17-03-17 19:34:02.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:02.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:02.508 -07 000000478 INF: FPGA: Recv ZSGSRD 29778
17-03-17 19:34:02.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:02.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:02.518 -07 000000608 INF: FPGA: Recv ZPIEZORD 25455
17-03-17 19:34:02.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:02.528 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -9.5 V.
17-03-17 19:34:02.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29777 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29777 (-130.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29773 (-130.8 uncal um), Max = 29783 (-130.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:34:02.528 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29777, posNoise = 6, negNoise = 4
17-03-17 19:34:02.528 -07 000000610 INF: Z Motor: After move to -0.131609, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:02.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:34:02.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:02.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:02.528 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:02.528 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:02.528 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:34:02.528 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:02.528 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:34:02.528 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:34:02.528 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:02.528 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:34:02.528 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:34:02.528 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:34:02.538 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:34:02.538 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:34:02.538 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:34:02.538 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:34:02.548 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:34:02.548 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:34:02.548 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:34:02.548 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:34:02.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28927 150\n [Camera]
17-03-17 19:34:02.748 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:34:03.148 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:34:03.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:34:03.148 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:03.148 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:03.148 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:34:03.148 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:34:03.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:34:03.158 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:03.158 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:03.158 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:34:03.338 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28927 787
17-03-17 19:34:03.488 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:34:03.528 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:34:03.528 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:34:03.528 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:03.528 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:34:03.528 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:34:03.528 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:03.538 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:34:03.538 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:34:03.538 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:34:03.538 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:34:03.688 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:34:03.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:34:03.688 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:03.688 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:03.688 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:34:03.688 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:34:03.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:34:03.688 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:03.688 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:03.688 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:34:03.878 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:34:03.878 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:34:03.878 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28927 150' command took 2 ms to send, 1323 ms to get response, and 1330 ms overall
17-03-17 19:34:03.878 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:34:03.878 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131617116956351. ------
17-03-17 19:34:03.878 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:03.878 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13788 mm
17-03-17 19:34:03.878 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:34:03.888 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:03.888 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:34:03.888 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:34:03.888 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30121, sync = True, waitForSettling = False)
17-03-17 19:34:03.888 -07 000000478 INF: Z Motor: Moving to -0.137885 mm, started at -0.131617 mm, distance = -6.27 um
17-03-17 19:34:03.888 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:34:03.888 -07 000000569 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 19:34:03.898 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:03.898 -07 000000608 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:34:03.908 -07 000000478 INF: FPGA: Xmit ZDACW 30121\n [Z Motor]
17-03-17 19:34:03.908 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:34:03.908 -07 000000569 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:03.908 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:34:03.908 -07 000000569 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:34:03.908 -07 000000569 INF: Y Motor: Moving 1340 steps-17
17-03-17 19:34:03.918 -07 000000478 INF: FPGA: 'ZDACW 30121' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:34:03.918 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:03.918 -07 000000502 INF: FPGA: Recv ZDACR 30121
17-03-17 19:34:03.928 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:34:03.928 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:03.928 -07 000000478 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 19:34:04.088 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:34:04.088 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:34:04.098 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 19:34:04.098 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:34:04.098 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 19:34:04.098 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 19:34:04.098 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:04.098 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:04.098 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:04.098 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:34:04.098 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 19:34:04.108 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 19:34:04.298 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:34:04.298 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 19:34:04.338 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:04.338 -07 000000475 INF: FPGA: Recv YRDPOS 136272
17-03-17 19:34:04.348 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:34:04.348 -07 000000569 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:04.348 -07 000000569 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:34:04.348 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.133 mm/sec
17-03-17 19:34:04.488 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.974486,
17-03-17 19:34:05.298 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:05.298 -07 000000608 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:34:05.308 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:05.308 -07 000000569 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:05.328 -07 000000569 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:34:05.328 -07 000000569 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:34:05.328 -07 000000569 INF: Y Motor: Moved to 66.5396 after 1437 ms (table move)
17-03-17 19:34:05.328 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137885 mm (DAC = 30121)
17-03-17 19:34:05.328 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:05.328 -07 000000478 INF: FPGA: Recv ZSGSRD 30754
17-03-17 19:34:05.338 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:34:05.338 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:05.338 -07 000000626 INF: FPGA: Recv ZSGSRD 30759
17-03-17 19:34:05.348 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:05.348 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:05.348 -07 000000012 INF: FPGA: Recv ZSGSRD 30750
17-03-17 19:34:05.358 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:05.358 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:05.358 -07 000000482 INF: FPGA: Recv ZSGSRD 30759
17-03-17 19:34:05.368 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:05.368 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:05.368 -07 000000431 INF: FPGA: Recv ZSGSRD 30754
17-03-17 19:34:05.378 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:05.378 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:05.378 -07 000000501 INF: FPGA: Recv ZSGSRD 30752
17-03-17 19:34:05.388 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:05.388 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:05.388 -07 000000429 INF: FPGA: Recv ZSGSRD 30759
17-03-17 19:34:05.398 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:05.398 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:05.398 -07 000000438 INF: FPGA: Recv ZSGSRD 30748
17-03-17 19:34:05.408 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:05.408 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:05.408 -07 000000478 INF: FPGA: Recv ZSGSRD 30751
17-03-17 19:34:05.418 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:05.418 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:05.418 -07 000000569 INF: FPGA: Recv ZSGSRD 30755
17-03-17 19:34:05.428 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:05.428 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:05.428 -07 000000502 INF: FPGA: Recv ZPIEZORD 26767
17-03-17 19:34:05.438 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:05.438 -07 000000627 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.596 V. Piezo Error = -8.8 V.
17-03-17 19:34:05.438 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30754 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30754 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30748 (-137.1 uncal um), Max = 30759 (-137.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:34:05.438 -07 000000627 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30754, posNoise = 5, negNoise = 6
17-03-17 19:34:05.438 -07 000000627 INF: Z Motor: After move to -0.137885, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:05.438 -07 000000627 INF: Z Motor: Settle wait time = 1441 ms, measure time = 105 ms (allowed 150 ms), total time = 1546 ms
17-03-17 19:34:05.438 -07 000000627 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:34:05.488 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 19:34:05.488 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:34:05.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:05.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:05.488 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:05.488 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:05.488 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:34:05.488 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:05.488 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:05.488 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:34:05.498 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:34:05.498 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:34:05.508 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:34:05.508 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:34:05.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:34:05.548 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:34:05.748 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:34:05.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:34:05.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:34:05.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 19:34:05.788 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:34:05.788 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 19:34:05.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 19:34:05.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 19:34:05.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:05.878 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:34:05.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 19:34:05.898 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:05.898 -07 000000569 INF: Autofocus start
17-03-17 19:34:05.898 -07 000000569 INF: MeasureProfile start
17-03-17 19:34:05.898 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:05.908 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:34:05.908 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:34:05.908 -07 000000569 INF: MeasureProfile done
17-03-17 19:34:05.908 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:34:05.908 -07 000000569 INF: Autofocus finished
17-03-17 19:34:06.108 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:34:06.108 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:34:06.108 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.137893572218851. ----------
17-03-17 19:34:06.118 -07 000000610 INF: Cycle	27	Tile	9	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:34:06.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28628, sync = True, waitForSettling = True)
17-03-17 19:34:06.118 -07 000000610 INF: Z Motor: Moving to -0.131051 mm, started at -0.137894 mm, distance = 6.84 um
17-03-17 19:34:06.118 -07 000000610 INF: FPGA: Xmit ZDACW 28628\n [Z Motor]
17-03-17 19:34:06.118 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:34:06.128 -07 000000610 INF: FPGA: 'ZDACW 28628' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:34:06.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:06.128 -07 000000438 INF: FPGA: Recv ZDACR 28628
17-03-17 19:34:06.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:06.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:34:06.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:06.288 -07 000000475 INF: FPGA: Recv ZSGSRD 29688
17-03-17 19:34:06.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:06.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:06.298 -07 000000627 INF: FPGA: Recv ZSGSRD 29687
17-03-17 19:34:06.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:06.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:06.308 -07 000000626 INF: FPGA: Recv ZSGSRD 29693
17-03-17 19:34:06.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:06.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:06.318 -07 000000482 INF: FPGA: Recv ZSGSRD 29686
17-03-17 19:34:06.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:06.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:06.328 -07 000000502 INF: FPGA: Recv ZSGSRD 29683
17-03-17 19:34:06.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:06.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:06.338 -07 000000475 INF: FPGA: Recv ZSGSRD 29693
17-03-17 19:34:06.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:06.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:06.348 -07 000000431 INF: FPGA: Recv ZSGSRD 29693
17-03-17 19:34:06.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:06.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:06.358 -07 000000012 INF: FPGA: Recv ZSGSRD 29692
17-03-17 19:34:06.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:06.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:06.368 -07 000000482 INF: FPGA: Recv ZSGSRD 29685
17-03-17 19:34:06.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:06.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:06.378 -07 000000438 INF: FPGA: Recv ZSGSRD 29686
17-03-17 19:34:06.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:06.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:06.388 -07 000000475 INF: FPGA: Recv ZPIEZORD 25379
17-03-17 19:34:06.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:06.398 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.368 V. Piezo Error = -9.5 V.
17-03-17 19:34:06.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29689 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29688 (-130.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29683 (-130.2 uncal um), Max = 29693 (-130.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:34:06.398 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29689, posNoise = 4, negNoise = 6
17-03-17 19:34:06.398 -07 000000610 INF: Z Motor: After move to -0.131051, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:06.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:34:06.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:06.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:06.398 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:06.398 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:06.398 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:34:06.398 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:34:06.398 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:06.398 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:34:06.398 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:06.398 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:34:06.398 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:34:06.398 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:34:06.408 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:34:06.408 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:34:06.408 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:34:06.408 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:34:06.418 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:34:06.418 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:34:06.418 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:34:06.418 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:34:06.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28805 150\n [Camera]
17-03-17 19:34:06.618 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:34:06.698 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:34:06.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:34:07.018 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:34:07.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:34:07.018 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:07.018 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:07.018 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 19:34:07.018 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:34:07.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:34:07.018 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:07.018 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:07.018 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 19:34:07.208 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28805 787
17-03-17 19:34:07.358 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:34:07.398 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:34:07.398 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:34:07.398 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:34:07.398 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:07.398 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:34:07.398 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:07.408 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:34:07.408 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:34:07.408 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:34:07.408 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:34:07.558 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:34:07.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:34:07.558 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:07.558 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:07.558 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:34:07.558 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:34:07.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:34:07.558 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:07.558 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:07.558 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 19:34:07.748 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:34:07.748 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:34:07.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28805 150' command took 2 ms to send, 1322 ms to get response, and 1329 ms overall
17-03-17 19:34:07.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:34:07.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.131051786287876. ------
17-03-17 19:34:07.748 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:07.748 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13783 mm
17-03-17 19:34:07.748 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:34:07.758 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:07.758 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:34:07.758 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:34:07.758 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30108, sync = True, waitForSettling = False)
17-03-17 19:34:07.758 -07 000000431 INF: Z Motor: Moving to -0.137826 mm, started at -0.131052 mm, distance = -6.77 um
17-03-17 19:34:07.758 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:34:07.758 -07 000000501 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 19:34:07.768 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:07.768 -07 000000012 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:34:07.778 -07 000000431 INF: FPGA: Xmit ZDACW 30108\n [Z Motor]
17-03-17 19:34:07.778 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:34:07.778 -07 000000501 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:07.778 -07 000000501 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:34:07.778 -07 000000501 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:34:07.778 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:34:07.788 -07 000000431 INF: FPGA: 'ZDACW 30108' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:34:07.788 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:07.788 -07 000000593 INF: FPGA: Recv ZDACR 30108
17-03-17 19:34:07.798 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:34:07.798 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:07.798 -07 000000431 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 19:34:07.948 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:34:07.948 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:34:07.948 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:07.948 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 19:34:07.948 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:34:07.948 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:07.958 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:34:07.958 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:34:07.958 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:34:07.958 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:34:07.958 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:34:07.958 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 19:34:08.168 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 19:34:08.168 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:34:08.208 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:08.208 -07 000000438 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:34:08.218 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:34:08.218 -07 000000501 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:08.218 -07 000000501 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 19:34:08.218 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.118 mm/sec
17-03-17 19:34:09.168 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:09.168 -07 000000429 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:34:09.178 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:09.178 -07 000000501 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:09.198 -07 000000501 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:34:09.198 -07 000000501 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:34:09.198 -07 000000501 INF: Y Motor: Moved to 67.3721 after 1440 ms (table move)
17-03-17 19:34:09.198 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137826 mm (DAC = 30108)
17-03-17 19:34:09.198 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:09.198 -07 000000012 INF: FPGA: Recv ZSGSRD 30745
17-03-17 19:34:09.208 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:34:09.208 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:09.208 -07 000000627 INF: FPGA: Recv ZSGSRD 30740
17-03-17 19:34:09.218 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:09.218 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:09.218 -07 000000608 INF: FPGA: Recv ZSGSRD 30745
17-03-17 19:34:09.228 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:09.228 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:09.228 -07 000000431 INF: FPGA: Recv ZSGSRD 30739
17-03-17 19:34:09.238 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:09.238 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:09.238 -07 000000626 INF: FPGA: Recv ZSGSRD 30744
17-03-17 19:34:09.248 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:09.248 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:09.248 -07 000000478 INF: FPGA: Recv ZSGSRD 30751
17-03-17 19:34:09.258 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:09.258 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:09.258 -07 000000429 INF: FPGA: Recv ZSGSRD 30752
17-03-17 19:34:09.268 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:09.268 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:09.268 -07 000000431 INF: FPGA: Recv ZSGSRD 30741
17-03-17 19:34:09.278 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:09.278 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:09.278 -07 000000438 INF: FPGA: Recv ZSGSRD 30734
17-03-17 19:34:09.288 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:09.288 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:09.288 -07 000000478 INF: FPGA: Recv ZSGSRD 30742
17-03-17 19:34:09.298 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:09.298 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:09.298 -07 000000501 INF: FPGA: Recv ZPIEZORD 26757
17-03-17 19:34:09.308 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:09.308 -07 000000462 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.594 V. Piezo Error = -8.8 V.
17-03-17 19:34:09.308 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30743 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30743 (-137.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30734 (-137.0 uncal um), Max = 30752 (-137.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:34:09.308 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30743, posNoise = 9, negNoise = 9
17-03-17 19:34:09.308 -07 000000462 INF: Z Motor: After move to -0.137826, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:09.308 -07 000000462 INF: Z Motor: Settle wait time = 1443 ms, measure time = 105 ms (allowed 150 ms), total time = 1548 ms
17-03-17 19:34:09.308 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:34:09.358 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 19:34:09.358 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:34:09.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:09.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:09.358 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:09.358 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:09.358 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:34:09.358 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:09.368 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:09.368 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:34:09.368 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:34:09.368 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:34:09.378 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:34:09.378 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:34:09.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:34:09.428 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:34:09.628 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:34:09.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:34:09.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:34:09.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) start.
17-03-17 19:34:09.668 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:34:09.668 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 19:34:09.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 19:34:09.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 19:34:09.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:09.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:34:09.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 19:34:09.768 -07 000000478 INF: Autofocus start
17-03-17 19:34:09.768 -07 000000478 INF: MeasureProfile start
17-03-17 19:34:09.768 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:09.768 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:09.778 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:34:09.778 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:34:09.788 -07 000000478 INF: MeasureProfile done
17-03-17 19:34:09.788 -07 000000478 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:34:09.788 -07 000000478 INF: Autofocus finished
17-03-17 19:34:09.858 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.981281,
17-03-17 19:34:09.978 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:34:09.978 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:34:09.978 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137822905885292. ----------
17-03-17 19:34:09.978 -07 000000610 INF: Cycle	27	Tile	10	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:34:09.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28632, sync = True, waitForSettling = True)
17-03-17 19:34:09.988 -07 000000610 INF: Z Motor: Moving to -0.131069 mm, started at -0.137823 mm, distance = 6.75 um
17-03-17 19:34:09.988 -07 000000610 INF: FPGA: Xmit ZDACW 28632\n [Z Motor]
17-03-17 19:34:09.988 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:34:09.998 -07 000000610 INF: FPGA: 'ZDACW 28632' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:09.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:09.998 -07 000000012 INF: FPGA: Recv ZDACR 28632
17-03-17 19:34:10.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:10.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:34:10.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:10.158 -07 000000475 INF: FPGA: Recv ZSGSRD 29697
17-03-17 19:34:10.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:10.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:10.168 -07 000000627 INF: FPGA: Recv ZSGSRD 29695
17-03-17 19:34:10.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:10.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:10.188 -07 000000462 INF: FPGA: Recv ZSGSRD 29698
17-03-17 19:34:10.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:34:10.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:10.218 -07 000000626 INF: FPGA: Recv ZSGSRD 29693
17-03-17 19:34:10.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:34:10.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:10.248 -07 000000626 INF: FPGA: Recv ZSGSRD 29693
17-03-17 19:34:10.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:34:10.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:10.258 -07 000000593 INF: FPGA: Recv ZSGSRD 29687
17-03-17 19:34:10.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:10.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:10.268 -07 000000551 INF: FPGA: Recv ZSGSRD 29695
17-03-17 19:34:10.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:10.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:10.278 -07 000000478 INF: FPGA: Recv ZSGSRD 29690
17-03-17 19:34:10.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:10.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:10.288 -07 000000626 INF: FPGA: Recv ZSGSRD 29694
17-03-17 19:34:10.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:10.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:10.298 -07 000000429 INF: FPGA: Recv ZSGSRD 29692
17-03-17 19:34:10.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:10.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:10.308 -07 000000501 INF: FPGA: Recv ZPIEZORD 25364
17-03-17 19:34:10.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:10.318 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.369 V. Piezo Error = -9.5 V.
17-03-17 19:34:10.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29693 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29694 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29687 (-130.3 uncal um), Max = 29698 (-130.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:34:10.318 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29693, posNoise = 5, negNoise = 6
17-03-17 19:34:10.318 -07 000000610 INF: Z Motor: After move to -0.131069, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:10.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 331 ms)
17-03-17 19:34:10.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:10.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:10.318 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:10.318 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:10.318 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:34:10.318 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:10.318 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:34:10.318 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:34:10.318 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:10.318 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:34:10.318 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:34:10.318 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:34:10.318 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:34:10.318 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:34:10.328 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:34:10.328 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:34:10.328 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:34:10.328 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:34:10.328 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:34:10.328 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:34:10.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28809 150\n [Camera]
17-03-17 19:34:10.538 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 19:34:10.938 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:34:10.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:34:10.938 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:10.938 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:10.938 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 19:34:10.938 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:34:10.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:34:10.938 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:10.938 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:10.938 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 19:34:11.128 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28809 787
17-03-17 19:34:11.278 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:34:11.318 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:34:11.318 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:34:11.318 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:11.318 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:34:11.318 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:34:11.318 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:11.328 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:11.328 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:34:11.328 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:11.328 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:34:11.478 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:34:11.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:34:11.478 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:11.598 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:34:11.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:34:11.598 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:11.598 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:11.598 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 19:34:11.608 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:11.608 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:34:11.668 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:34:11.668 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:34:11.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28809 150' command took 2 ms to send, 1322 ms to get response, and 1330 ms overall
17-03-17 19:34:11.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:34:11.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.131077483136443. ------
17-03-17 19:34:11.668 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:11.668 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13751 mm
17-03-17 19:34:11.668 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:34:11.678 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:11.678 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:34:11.678 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:34:11.678 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:34:11.678 -07 000000626 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 19:34:11.678 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30040, sync = True, waitForSettling = False)
17-03-17 19:34:11.678 -07 000000438 INF: Z Motor: Moving to -0.137514 mm, started at -0.131077 mm, distance = -6.44 um
17-03-17 19:34:11.688 -07 000000438 INF: FPGA: Xmit ZDACW 30040\n [Z Motor]
17-03-17 19:34:11.688 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:34:11.698 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:11.698 -07 000000438 INF: FPGA: 'ZDACW 30040' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:34:11.698 -07 000000569 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:34:11.698 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:34:11.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:34:11.708 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:34:11.708 -07 000000626 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:11.708 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:11.708 -07 000000626 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:34:11.708 -07 000000626 INF: Y Motor: Moving 1344 steps-22
17-03-17 19:34:11.708 -07 000000475 INF: FPGA: Recv ZDACR 30040
17-03-17 19:34:11.718 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:34:11.718 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:34:11.718 -07 000000438 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:34:11.878 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:34:11.878 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:34:11.998 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 19:34:11.998 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:34:11.998 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:11.998 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:34:11.998 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:34:11.998 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:11.998 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:11.998 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:11.998 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-17 19:34:12.008 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:34:12.088 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:34:12.088 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 19:34:12.128 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:12.128 -07 000000551 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:34:12.138 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:34:12.138 -07 000000626 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:12.138 -07 000000626 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:34:12.138 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.841 mm, average velocity = 2.195 mm/sec
17-03-17 19:34:13.088 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:13.088 -07 000000608 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:34:13.098 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:13.098 -07 000000626 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:13.108 -07 000000626 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:34:13.108 -07 000000626 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:34:13.108 -07 000000626 INF: Y Motor: Moved to 68.2051 after 1437 ms (table move)
17-03-17 19:34:13.118 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137514 mm (DAC = 30040)
17-03-17 19:34:13.118 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:13.118 -07 000000482 INF: FPGA: Recv ZSGSRD 30697
17-03-17 19:34:13.128 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:34:13.128 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:13.128 -07 000000478 INF: FPGA: Recv ZSGSRD 30699
17-03-17 19:34:13.138 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:13.138 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:13.138 -07 000000569 INF: FPGA: Recv ZSGSRD 30697
17-03-17 19:34:13.148 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:13.148 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:13.148 -07 000000627 INF: FPGA: Recv ZSGSRD 30699
17-03-17 19:34:13.158 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:13.158 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:13.158 -07 000000431 INF: FPGA: Recv ZSGSRD 30695
17-03-17 19:34:13.168 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:13.168 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:13.168 -07 000000438 INF: FPGA: Recv ZSGSRD 30696
17-03-17 19:34:13.178 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:13.178 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:13.178 -07 000000502 INF: FPGA: Recv ZSGSRD 30695
17-03-17 19:34:13.188 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:13.188 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:13.188 -07 000000475 INF: FPGA: Recv ZSGSRD 30689
17-03-17 19:34:13.198 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:13.198 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:13.198 -07 000000482 INF: FPGA: Recv ZSGSRD 30689
17-03-17 19:34:13.208 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:13.208 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:13.208 -07 000000501 INF: FPGA: Recv ZSGSRD 30695
17-03-17 19:34:13.218 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:13.218 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:13.218 -07 000000569 INF: FPGA: Recv ZPIEZORD 26676
17-03-17 19:34:13.228 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:13.228 -07 000000593 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.584 V. Piezo Error = -8.9 V.
17-03-17 19:34:13.228 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30695 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30696 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30689 (-136.7 uncal um), Max = 30699 (-136.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:34:13.228 -07 000000593 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30695, posNoise = 4, negNoise = 6
17-03-17 19:34:13.228 -07 000000593 INF: Z Motor: After move to -0.137514, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:13.228 -07 000000593 INF: Z Motor: Settle wait time = 1441 ms, measure time = 107 ms (allowed 150 ms), total time = 1548 ms
17-03-17 19:34:13.228 -07 000000593 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:34:13.278 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 19:34:13.278 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:34:13.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:13.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:13.278 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:13.278 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:34:13.278 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:13.278 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:13.278 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:13.278 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:34:13.288 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:34:13.288 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:34:13.298 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:34:13.298 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:34:13.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:34:13.348 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:34:13.548 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:34:13.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:34:13.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:34:13.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 19:34:13.588 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:34:13.588 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 19:34:13.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 19:34:13.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 19:34:13.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:13.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:34:13.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:34:13.688 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:13.688 -07 000000593 INF: Autofocus start
17-03-17 19:34:13.688 -07 000000593 INF: MeasureProfile start
17-03-17 19:34:13.688 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:13.698 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:34:13.698 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:34:13.698 -07 000000593 INF: MeasureProfile done
17-03-17 19:34:13.698 -07 000000593 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:34:13.698 -07 000000593 INF: Autofocus finished
17-03-17 19:34:13.898 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:34:13.898 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 19:34:13.898 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.137514543702488. ----------
17-03-17 19:34:13.908 -07 000000610 INF: Cycle	27	Tile	11	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:34:13.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28547, sync = True, waitForSettling = True)
17-03-17 19:34:13.908 -07 000000610 INF: Z Motor: Moving to -0.130680 mm, started at -0.137515 mm, distance = 6.83 um
17-03-17 19:34:13.908 -07 000000610 INF: FPGA: Xmit ZDACW 28547\n [Z Motor]
17-03-17 19:34:13.908 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:34:13.918 -07 000000610 INF: FPGA: 'ZDACW 28547' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:34:13.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:13.918 -07 000000626 INF: FPGA: Recv ZDACR 28547
17-03-17 19:34:13.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:13.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:34:14.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:14.078 -07 000000608 INF: FPGA: Recv ZSGSRD 29633
17-03-17 19:34:14.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:14.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:14.088 -07 000000551 INF: FPGA: Recv ZSGSRD 29633
17-03-17 19:34:14.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:14.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:14.098 -07 000000429 INF: FPGA: Recv ZSGSRD 29634
17-03-17 19:34:14.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:14.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:14.108 -07 000000501 INF: FPGA: Recv ZSGSRD 29633
17-03-17 19:34:14.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:14.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:14.118 -07 000000608 INF: FPGA: Recv ZSGSRD 29627
17-03-17 19:34:14.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:14.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:14.128 -07 000000512 INF: FPGA: Recv ZSGSRD 29629
17-03-17 19:34:14.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:14.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:14.138 -07 000000475 INF: FPGA: Recv ZSGSRD 29632
17-03-17 19:34:14.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:14.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:14.148 -07 000000627 INF: FPGA: Recv ZSGSRD 29635
17-03-17 19:34:14.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:14.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:14.158 -07 000000429 INF: FPGA: Recv ZSGSRD 29630
17-03-17 19:34:14.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:14.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:14.168 -07 000000512 INF: FPGA: Recv ZSGSRD 29629
17-03-17 19:34:14.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:14.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:14.178 -07 000000482 INF: FPGA: Recv ZPIEZORD 25287
17-03-17 19:34:14.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:14.188 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.356 V. Piezo Error = -9.5 V.
17-03-17 19:34:14.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29632 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29632 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29627 (-129.9 uncal um), Max = 29635 (-129.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:34:14.188 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29632, posNoise = 3, negNoise = 5
17-03-17 19:34:14.188 -07 000000610 INF: Z Motor: After move to -0.130680, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:14.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:34:14.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:14.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:14.188 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:14.188 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:14.188 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:34:14.188 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:34:14.188 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:34:14.188 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:14.188 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:34:14.188 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:34:14.188 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:14.188 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:34:14.198 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:34:14.198 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:34:14.198 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:34:14.198 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:34:14.208 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:34:14.208 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:34:14.208 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:34:14.208 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:34:14.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28724 150\n [Camera]
17-03-17 19:34:14.408 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:34:14.808 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:34:14.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:34:14.808 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:14.808 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:34:14.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:34:14.818 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:14.818 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:14.818 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:34:14.818 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:14.818 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:34:14.998 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28724 787
17-03-17 19:34:15.148 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:34:15.188 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 19:34:15.188 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 19:34:15.298 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:15.298 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 486 ms.
17-03-17 19:34:15.298 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 487 ms.
17-03-17 19:34:15.298 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:15.308 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.005817,
17-03-17 19:34:15.308 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 119 ms.
17-03-17 19:34:15.308 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:34:15.308 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 497 ms.
17-03-17 19:34:15.318 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 504 ms.
17-03-17 19:34:15.348 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:34:15.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:34:15.348 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:15.348 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:34:15.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:34:15.348 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:15.358 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:15.358 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:34:15.358 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:15.358 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:34:15.538 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:34:15.538 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:34:15.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28724 150' command took 2 ms to send, 1326 ms to get response, and 1332 ms overall
17-03-17 19:34:15.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:34:15.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.130685606195796. ------
17-03-17 19:34:15.548 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:15.548 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13730 mm
17-03-17 19:34:15.548 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:34:15.548 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:15.548 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:34:15.548 -07 000000502 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 19:34:15.548 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29992, sync = True, waitForSettling = False)
17-03-17 19:34:15.548 -07 000000501 INF: Z Motor: Moving to -0.137295 mm, started at -0.130686 mm, distance = -6.61 um
17-03-17 19:34:15.558 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:34:15.558 -07 000000501 INF: FPGA: Xmit ZDACW 29992\n [Z Motor]
17-03-17 19:34:15.558 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:34:15.568 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:15.568 -07 000000501 INF: FPGA: 'ZDACW 29992' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:34:15.568 -07 000000482 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:34:15.578 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:34:15.578 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:34:15.578 -07 000000502 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:15.578 -07 000000502 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:34:15.578 -07 000000502 INF: Y Motor: Moving 1339 steps-15
17-03-17 19:34:15.588 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:15.588 -07 000000593 INF: FPGA: Recv ZDACR 29992
17-03-17 19:34:15.598 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:34:15.598 -07 000000501 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 19:34:15.598 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:34:15.728 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:34:15.728 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:34:15.728 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:15.728 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:34:15.728 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:34:15.728 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:15.738 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:34:15.738 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:34:15.738 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:34:15.748 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:34:15.778 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:34:15.778 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:34:15.968 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 19:34:15.978 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 396 ms overall
17-03-17 19:34:16.008 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:16.008 -07 000000626 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:34:16.018 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:34:16.018 -07 000000502 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:16.018 -07 000000502 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 19:34:16.018 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.838 mm, average velocity = 2.115 mm/sec
17-03-17 19:34:16.698 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:34:16.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:34:16.968 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:16.968 -07 000000478 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:34:16.978 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:16.978 -07 000000502 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:16.998 -07 000000502 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:34:16.998 -07 000000502 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:34:16.998 -07 000000502 INF: Y Motor: Moved to 69.0273 after 1443 ms (table move)
17-03-17 19:34:16.998 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137295 mm (DAC = 29992)
17-03-17 19:34:16.998 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:16.998 -07 000000501 INF: FPGA: Recv ZSGSRD 30669
17-03-17 19:34:17.008 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:34:17.008 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:17.008 -07 000000569 INF: FPGA: Recv ZSGSRD 30662
17-03-17 19:34:17.018 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:17.018 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:17.018 -07 000000482 INF: FPGA: Recv ZSGSRD 30665
17-03-17 19:34:17.028 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:17.028 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:17.028 -07 000000551 INF: FPGA: Recv ZSGSRD 30657
17-03-17 19:34:17.038 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:17.038 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:17.038 -07 000000462 INF: FPGA: Recv ZSGSRD 30660
17-03-17 19:34:17.048 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:17.048 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:17.048 -07 000000569 INF: FPGA: Recv ZSGSRD 30664
17-03-17 19:34:17.058 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:17.058 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:17.058 -07 000000593 INF: FPGA: Recv ZSGSRD 30663
17-03-17 19:34:17.068 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:17.068 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:17.068 -07 000000482 INF: FPGA: Recv ZSGSRD 30665
17-03-17 19:34:17.078 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:17.078 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:17.078 -07 000000012 INF: FPGA: Recv ZSGSRD 30665
17-03-17 19:34:17.088 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:17.088 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:17.088 -07 000000475 INF: FPGA: Recv ZSGSRD 30667
17-03-17 19:34:17.098 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:17.098 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:17.098 -07 000000593 INF: FPGA: Recv ZPIEZORD 26616
17-03-17 19:34:17.108 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:17.108 -07 000000627 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.576 V. Piezo Error = -8.9 V.
17-03-17 19:34:17.108 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30664 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30664 (-136.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30657 (-136.5 uncal um), Max = 30669 (-136.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:34:17.108 -07 000000627 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30664, posNoise = 5, negNoise = 7
17-03-17 19:34:17.108 -07 000000627 INF: Z Motor: After move to -0.137295, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:17.108 -07 000000627 INF: Z Motor: Settle wait time = 1446 ms, measure time = 105 ms (allowed 150 ms), total time = 1551 ms
17-03-17 19:34:17.108 -07 000000627 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:34:17.158 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 19:34:17.158 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:34:17.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:17.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:17.158 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:17.158 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:17.158 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:34:17.158 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:17.158 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:17.158 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:34:17.168 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:34:17.168 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:34:17.168 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:34:17.168 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:34:17.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:34:17.218 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:34:17.418 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:34:17.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:34:17.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:34:17.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 19:34:17.458 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:34:17.458 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 19:34:17.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 19:34:17.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:34:17.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:17.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:34:17.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:34:17.658 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:17.658 -07 000000502 INF: Autofocus start
17-03-17 19:34:17.658 -07 000000502 INF: MeasureProfile start
17-03-17 19:34:17.658 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:17.668 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:34:17.668 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:34:17.668 -07 000000502 INF: MeasureProfile done
17-03-17 19:34:17.668 -07 000000502 INF: X=23  Z correction [um]=0.08669062
17-03-17 19:34:17.668 -07 000000502 INF: Autofocus finished
17-03-17 19:34:17.868 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:34:17.868 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:34:17.868 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.137315393126093. ----------
17-03-17 19:34:17.868 -07 000000610 INF: Cycle	27	Tile	12	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:34:17.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28524, sync = True, waitForSettling = True)
17-03-17 19:34:17.878 -07 000000610 INF: Z Motor: Moving to -0.130575 mm, started at -0.137315 mm, distance = 6.74 um
17-03-17 19:34:17.878 -07 000000610 INF: FPGA: Xmit ZDACW 28524\n [Z Motor]
17-03-17 19:34:17.878 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:34:17.888 -07 000000610 INF: FPGA: 'ZDACW 28524' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:34:17.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:17.888 -07 000000608 INF: FPGA: Recv ZDACR 28524
17-03-17 19:34:17.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:17.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:34:18.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:18.048 -07 000000438 INF: FPGA: Recv ZSGSRD 29620
17-03-17 19:34:18.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:18.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:18.058 -07 000000551 INF: FPGA: Recv ZSGSRD 29617
17-03-17 19:34:18.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:18.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:18.068 -07 000000501 INF: FPGA: Recv ZSGSRD 29615
17-03-17 19:34:18.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:18.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:18.078 -07 000000627 INF: FPGA: Recv ZSGSRD 29620
17-03-17 19:34:18.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:18.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:18.088 -07 000000502 INF: FPGA: Recv ZSGSRD 29611
17-03-17 19:34:18.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:18.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:18.098 -07 000000626 INF: FPGA: Recv ZSGSRD 29608
17-03-17 19:34:18.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:18.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:18.108 -07 000000569 INF: FPGA: Recv ZSGSRD 29611
17-03-17 19:34:18.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:18.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:18.118 -07 000000462 INF: FPGA: Recv ZSGSRD 29612
17-03-17 19:34:18.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:18.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:18.128 -07 000000475 INF: FPGA: Recv ZSGSRD 29619
17-03-17 19:34:18.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:18.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:18.138 -07 000000438 INF: FPGA: Recv ZSGSRD 29617
17-03-17 19:34:18.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:18.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:18.148 -07 000000482 INF: FPGA: Recv ZPIEZORD 25283
17-03-17 19:34:18.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:18.158 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.5 V.
17-03-17 19:34:18.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29615 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29616 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29608 (-129.8 uncal um), Max = 29620 (-129.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:34:18.158 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29615, posNoise = 5, negNoise = 7
17-03-17 19:34:18.158 -07 000000610 INF: Z Motor: After move to -0.130575, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:18.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:34:18.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:18.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:18.158 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:18.158 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:34:18.158 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:18.158 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:18.158 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:34:18.158 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:34:18.158 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:34:18.158 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:34:18.158 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:34:18.158 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:34:18.168 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:34:18.168 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:34:18.168 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:34:18.168 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:34:18.168 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:34:18.168 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:34:18.168 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:34:18.168 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:34:18.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28701 150\n [Camera]
17-03-17 19:34:18.378 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:34:18.778 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:34:18.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:34:18.778 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:18.778 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:34:18.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:34:18.778 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:18.788 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:18.788 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1059196976, 0x0, 391868352) start.
17-03-17 19:34:18.788 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:18.788 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1094619240, 0x0, 418435064) start.
17-03-17 19:34:18.968 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28701 787
17-03-17 19:34:19.118 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:34:19.168 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1059196976, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:34:19.168 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1094619240, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:34:19.168 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:34:19.168 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:19.168 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:34:19.168 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:19.178 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:34:19.178 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:34:19.178 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:34:19.178 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:34:19.308 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:34:19.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:34:19.318 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:19.318 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:34:19.318 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:19.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:34:19.318 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 654475248, 0x0, 391868352) start.
17-03-17 19:34:19.318 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:19.318 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:19.318 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:34:19.508 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:34:19.508 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:34:19.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28701 150' command took 2 ms to send, 1322 ms to get response, and 1330 ms overall
17-03-17 19:34:19.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:34:19.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.130576394589386. ------
17-03-17 19:34:19.508 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:19.508 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13696 mm
17-03-17 19:34:19.508 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:34:19.508 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:34:19.508 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29918, sync = True, waitForSettling = False)
17-03-17 19:34:19.508 -07 000000502 INF: Z Motor: Moving to -0.136956 mm, started at -0.130576 mm, distance = -6.38 um
17-03-17 19:34:19.508 -07 000000012 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 19:34:19.508 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:19.518 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:34:19.518 -07 000000502 INF: FPGA: Xmit ZDACW 29918\n [Z Motor]
17-03-17 19:34:19.518 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:34:19.528 -07 000000502 INF: FPGA: 'ZDACW 29918' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:19.528 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:34:19.538 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:19.538 -07 000000608 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:34:19.548 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:34:19.548 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:19.548 -07 000000012 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:19.548 -07 000000501 INF: FPGA: Recv ZDACR 29918
17-03-17 19:34:19.548 -07 000000012 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:34:19.548 -07 000000012 INF: Y Motor: Moving 1352 steps-31
17-03-17 19:34:19.558 -07 000000502 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:34:19.558 -07 000000502 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 19:34:19.558 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:34:19.698 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:34:19.698 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:34:19.698 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:19.698 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:34:19.698 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 654475248, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:34:19.698 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:34:19.698 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:19.708 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:34:19.708 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:34:19.708 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:34:19.728 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:34:19.728 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 19:34:19.928 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 19:34:19.928 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 19:34:19.968 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:19.968 -07 000000593 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:34:19.978 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:34:19.978 -07 000000012 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:19.978 -07 000000012 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:34:19.978 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.845 mm, average velocity = 2.219 mm/sec
17-03-17 19:34:20.678 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.986717,
17-03-17 19:34:20.928 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:20.928 -07 000000593 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:34:20.938 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:20.938 -07 000000012 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:20.958 -07 000000012 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:34:20.958 -07 000000012 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:34:20.958 -07 000000012 INF: Y Motor: Moved to 69.8638 after 1443 ms (table move)
17-03-17 19:34:20.958 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136956 mm (DAC = 29918)
17-03-17 19:34:20.958 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:20.958 -07 000000502 INF: FPGA: Recv ZSGSRD 30611
17-03-17 19:34:20.968 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:34:20.968 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:20.968 -07 000000438 INF: FPGA: Recv ZSGSRD 30616
17-03-17 19:34:20.978 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:20.978 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:20.978 -07 000000626 INF: FPGA: Recv ZSGSRD 30605
17-03-17 19:34:20.988 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:21.008 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:21.008 -07 000000512 INF: FPGA: Recv ZSGSRD 30609
17-03-17 19:34:21.018 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:34:21.028 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:21.028 -07 000000438 INF: FPGA: Recv ZSGSRD 30606
17-03-17 19:34:21.038 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:34:21.038 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:21.038 -07 000000627 INF: FPGA: Recv ZSGSRD 30608
17-03-17 19:34:21.048 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:21.068 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:21.068 -07 000000608 INF: FPGA: Recv ZSGSRD 30616
17-03-17 19:34:21.078 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:34:21.078 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:21.078 -07 000000593 INF: FPGA: Recv ZSGSRD 30610
17-03-17 19:34:21.088 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:21.088 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:21.088 -07 000000478 INF: FPGA: Recv ZSGSRD 30608
17-03-17 19:34:21.098 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:21.098 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:21.098 -07 000000431 INF: FPGA: Recv ZSGSRD 30607
17-03-17 19:34:21.108 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:21.108 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:21.108 -07 000000502 INF: FPGA: Recv ZPIEZORD 26608
17-03-17 19:34:21.118 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:21.118 -07 000000569 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.565 V. Piezo Error = -8.8 V.
17-03-17 19:34:21.118 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30610 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30608 (-136.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30605 (-136.1 uncal um), Max = 30616 (-136.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:34:21.118 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30610, posNoise = 6, negNoise = 5
17-03-17 19:34:21.118 -07 000000569 INF: Z Motor: After move to -0.136956, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:21.118 -07 000000569 INF: Z Motor: Settle wait time = 1446 ms, measure time = 155 ms (allowed 150 ms), total time = 1601 ms
17-03-17 19:34:21.118 -07 000000569 INF: Z Motor: Warning: Actual position measuring time = 155 ms, longer than max expected time of 150 ms
17-03-17 19:34:21.118 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 19:34:21.118 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:34:21.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:21.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:21.118 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:21.118 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:21.118 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:34:21.118 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:21.118 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:21.118 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:34:21.128 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:34:21.128 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:34:21.128 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:34:21.128 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:34:21.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:34:21.178 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:34:21.378 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:34:21.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:34:21.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:34:21.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460549448, 0x0, 559484976) start.
17-03-17 19:34:21.418 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:34:21.418 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 19:34:21.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 19:34:21.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460549448, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:34:21.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:21.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:34:21.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 19:34:21.518 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:21.518 -07 000000593 INF: Autofocus start
17-03-17 19:34:21.518 -07 000000593 INF: MeasureProfile start
17-03-17 19:34:21.518 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:21.528 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:34:21.528 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:34:21.528 -07 000000593 INF: MeasureProfile done
17-03-17 19:34:21.528 -07 000000593 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:34:21.528 -07 000000593 INF: Autofocus finished
17-03-17 19:34:21.698 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:34:21.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:34:21.728 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:34:21.728 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:34:21.728 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.136968485670438. ----------
17-03-17 19:34:21.728 -07 000000610 INF: Cycle	27	Tile	13	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:34:21.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28413, sync = True, waitForSettling = True)
17-03-17 19:34:21.738 -07 000000610 INF: Z Motor: Moving to -0.130066 mm, started at -0.136968 mm, distance = 6.90 um
17-03-17 19:34:21.738 -07 000000610 INF: FPGA: Xmit ZDACW 28413\n [Z Motor]
17-03-17 19:34:21.738 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:34:21.748 -07 000000610 INF: FPGA: 'ZDACW 28413' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:21.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:21.748 -07 000000475 INF: FPGA: Recv ZDACR 28413
17-03-17 19:34:21.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:21.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:34:21.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:21.908 -07 000000512 INF: FPGA: Recv ZSGSRD 29538
17-03-17 19:34:21.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:21.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:21.918 -07 000000608 INF: FPGA: Recv ZSGSRD 29537
17-03-17 19:34:21.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:21.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:21.928 -07 000000626 INF: FPGA: Recv ZSGSRD 29537
17-03-17 19:34:21.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:21.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:21.938 -07 000000569 INF: FPGA: Recv ZSGSRD 29535
17-03-17 19:34:21.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:21.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:21.948 -07 000000627 INF: FPGA: Recv ZSGSRD 29542
17-03-17 19:34:21.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:21.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:21.958 -07 000000551 INF: FPGA: Recv ZSGSRD 29535
17-03-17 19:34:21.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:21.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:21.968 -07 000000593 INF: FPGA: Recv ZSGSRD 29535
17-03-17 19:34:21.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:21.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:21.978 -07 000000012 INF: FPGA: Recv ZSGSRD 29541
17-03-17 19:34:21.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:21.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:21.988 -07 000000626 INF: FPGA: Recv ZSGSRD 29542
17-03-17 19:34:21.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:21.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:21.998 -07 000000608 INF: FPGA: Recv ZSGSRD 29538
17-03-17 19:34:22.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:22.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:22.008 -07 000000431 INF: FPGA: Recv ZPIEZORD 25201
17-03-17 19:34:22.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:22.018 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.336 V. Piezo Error = -9.5 V.
17-03-17 19:34:22.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29538 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29538 (-129.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29535 (-129.3 uncal um), Max = 29542 (-129.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:34:22.018 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29538, posNoise = 4, negNoise = 3
17-03-17 19:34:22.018 -07 000000610 INF: Z Motor: After move to -0.130066, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:22.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:34:22.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:22.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:22.018 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:22.018 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:22.028 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:34:22.028 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:22.028 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:34:22.028 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:34:22.028 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:22.028 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:34:22.028 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:34:22.028 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:34:22.028 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:34:22.028 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:34:22.028 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:34:22.028 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:34:22.038 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:34:22.038 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:34:22.038 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:34:22.038 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:34:22.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28590 150\n [Camera]
17-03-17 19:34:22.248 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:34:22.648 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:34:22.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:34:22.648 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:22.648 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:22.648 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:34:22.648 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:34:22.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:34:22.648 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:22.648 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:22.648 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:34:22.838 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28590 789
17-03-17 19:34:22.988 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:34:23.028 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:34:23.028 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:34:23.028 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:23.028 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:34:23.028 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:34:23.028 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:34:23.028 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:23.028 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:34:23.028 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:34:23.038 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:34:23.178 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:34:23.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:34:23.188 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:23.188 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:23.188 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:34:23.188 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:34:23.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:34:23.188 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:23.188 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:23.188 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:34:23.378 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:34:23.378 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:34:23.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28590 150' command took 2 ms to send, 1321 ms to get response, and 1330 ms overall
17-03-17 19:34:23.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:34:23.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.13008173025447. ------
17-03-17 19:34:23.378 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:23.378 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13652 mm
17-03-17 19:34:23.378 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:34:23.388 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:34:23.388 -07 000000462 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 19:34:23.388 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:23.388 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29823, sync = True, waitForSettling = False)
17-03-17 19:34:23.388 -07 000000012 INF: Z Motor: Moving to -0.136521 mm, started at -0.130082 mm, distance = -6.44 um
17-03-17 19:34:23.388 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:23.388 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:34:23.388 -07 000000501 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:34:23.398 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:34:23.398 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:34:23.398 -07 000000462 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:23.398 -07 000000462 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:34:23.398 -07 000000462 INF: Y Motor: Moving 1342 steps-18
17-03-17 19:34:23.408 -07 000000012 INF: FPGA: Xmit ZDACW 29823\n [Z Motor]
17-03-17 19:34:23.408 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:34:23.418 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:34:23.418 -07 000000012 INF: FPGA: 'ZDACW 29823' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:34:23.428 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:23.428 -07 000000501 INF: FPGA: Recv ZDACR 29823
17-03-17 19:34:23.438 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:34:23.438 -07 000000012 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 19:34:23.588 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 19:34:23.588 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 19:34:23.588 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:34:23.588 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:23.588 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:34:23.588 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:23.598 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:23.598 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:23.598 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 19:34:23.598 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:34:23.598 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 19:34:23.598 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:34:23.788 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:34:23.788 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:34:23.828 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:23.828 -07 000000512 INF: FPGA: Recv YRDPOS 144770
17-03-17 19:34:23.838 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:34:23.838 -07 000000462 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:23.838 -07 000000462 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:34:23.838 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 19:34:24.788 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:24.788 -07 000000551 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:34:24.798 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:24.798 -07 000000462 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:24.818 -07 000000462 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:34:24.818 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:34:24.818 -07 000000462 INF: Y Motor: Moved to 70.6890 after 1430 ms (table move)
17-03-17 19:34:24.818 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136521 mm (DAC = 29823)
17-03-17 19:34:24.818 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:24.818 -07 000000475 INF: FPGA: Recv ZSGSRD 30541
17-03-17 19:34:24.828 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:34:24.828 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:24.828 -07 000000478 INF: FPGA: Recv ZSGSRD 30541
17-03-17 19:34:24.838 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:24.838 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:24.838 -07 000000608 INF: FPGA: Recv ZSGSRD 30541
17-03-17 19:34:24.848 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:24.848 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:24.848 -07 000000462 INF: FPGA: Recv ZSGSRD 30548
17-03-17 19:34:24.858 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:24.858 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:24.858 -07 000000626 INF: FPGA: Recv ZSGSRD 30540
17-03-17 19:34:24.868 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:24.868 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:24.868 -07 000000608 INF: FPGA: Recv ZSGSRD 30545
17-03-17 19:34:24.878 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:24.878 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:24.878 -07 000000626 INF: FPGA: Recv ZSGSRD 30544
17-03-17 19:34:24.888 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:24.888 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:24.888 -07 000000462 INF: FPGA: Recv ZSGSRD 30539
17-03-17 19:34:24.898 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:24.898 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:24.898 -07 000000608 INF: FPGA: Recv ZSGSRD 30544
17-03-17 19:34:24.908 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:24.908 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:24.908 -07 000000626 INF: FPGA: Recv ZSGSRD 30533
17-03-17 19:34:24.918 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:24.918 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:24.918 -07 000000462 INF: FPGA: Recv ZPIEZORD 26506
17-03-17 19:34:24.928 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:24.928 -07 000000502 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.551 V. Piezo Error = -8.9 V.
17-03-17 19:34:24.928 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30542 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30541 (-135.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30533 (-135.7 uncal um), Max = 30548 (-135.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:34:24.928 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30542, posNoise = 6, negNoise = 9
17-03-17 19:34:24.928 -07 000000502 INF: Z Motor: After move to -0.136521, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:24.928 -07 000000502 INF: Z Motor: Settle wait time = 1433 ms, measure time = 105 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:34:24.928 -07 000000502 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:34:24.978 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 19:34:24.978 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:34:24.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:24.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:24.978 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:24.978 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:24.978 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:34:24.978 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:24.978 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:34:24.978 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:34:24.988 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:34:24.988 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:34:24.988 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:34:24.988 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:34:24.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:34:25.038 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:34:25.238 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:34:25.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:34:25.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:34:25.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1479630832, 0x0, 559484976) start.
17-03-17 19:34:25.278 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:34:25.278 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:34:25.278 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 287 ms overall
17-03-17 19:34:25.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1479630832, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:34:25.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:25.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:34:25.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 19:34:25.378 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:25.378 -07 000000608 INF: Autofocus start
17-03-17 19:34:25.378 -07 000000608 INF: MeasureProfile start
17-03-17 19:34:25.378 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:25.388 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:34:25.388 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:34:25.388 -07 000000608 INF: MeasureProfile done
17-03-17 19:34:25.388 -07 000000608 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:34:25.388 -07 000000608 INF: Autofocus finished
17-03-17 19:34:25.588 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:34:25.588 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:34:25.588 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136531639244798. ----------
17-03-17 19:34:25.588 -07 000000610 INF: Cycle	27	Tile	14	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:34:25.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28347, sync = True, waitForSettling = True)
17-03-17 19:34:25.598 -07 000000610 INF: Z Motor: Moving to -0.129764 mm, started at -0.136532 mm, distance = 6.77 um
17-03-17 19:34:25.598 -07 000000610 INF: FPGA: Xmit ZDACW 28347\n [Z Motor]
17-03-17 19:34:25.598 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:34:25.608 -07 000000610 INF: FPGA: 'ZDACW 28347' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:34:25.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:25.608 -07 000000431 INF: FPGA: Recv ZDACR 28347
17-03-17 19:34:25.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:25.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:34:25.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:25.768 -07 000000502 INF: FPGA: Recv ZSGSRD 29486
17-03-17 19:34:25.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:25.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:25.778 -07 000000431 INF: FPGA: Recv ZSGSRD 29490
17-03-17 19:34:25.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:25.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:25.788 -07 000000462 INF: FPGA: Recv ZSGSRD 29496
17-03-17 19:34:25.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:25.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:25.798 -07 000000569 INF: FPGA: Recv ZSGSRD 29482
17-03-17 19:34:25.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:25.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:25.808 -07 000000502 INF: FPGA: Recv ZSGSRD 29490
17-03-17 19:34:25.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:25.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:25.818 -07 000000431 INF: FPGA: Recv ZSGSRD 29489
17-03-17 19:34:25.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:25.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:25.828 -07 000000012 INF: FPGA: Recv ZSGSRD 29486
17-03-17 19:34:25.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:25.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:25.838 -07 000000569 INF: FPGA: Recv ZSGSRD 29491
17-03-17 19:34:25.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:25.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:25.848 -07 000000478 INF: FPGA: Recv ZSGSRD 29481
17-03-17 19:34:25.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:25.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:25.858 -07 000000482 INF: FPGA: Recv ZSGSRD 29492
17-03-17 19:34:25.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:25.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:25.868 -07 000000551 INF: FPGA: Recv ZPIEZORD 25171
17-03-17 19:34:25.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:25.878 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.325 V. Piezo Error = -9.5 V.
17-03-17 19:34:25.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29488 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29490 (-129.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29481 (-128.9 uncal um), Max = 29496 (-129.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:34:25.878 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29488, posNoise = 8, negNoise = 7
17-03-17 19:34:25.878 -07 000000610 INF: Z Motor: After move to -0.129764, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:25.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:34:25.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:25.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:25.878 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:25.878 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:34:25.878 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:25.878 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:25.878 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:25.878 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:34:25.878 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:34:25.878 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:34:25.878 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:34:25.878 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:34:25.878 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:34:25.878 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:34:25.888 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:34:25.888 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:34:25.898 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 19:34:25.898 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:34:25.898 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 19:34:25.898 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:34:25.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28524 150\n [Camera]
17-03-17 19:34:26.048 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.981281,
17-03-17 19:34:26.098 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 19:34:26.508 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:34:26.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:34:26.508 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:26.508 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:26.508 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 19:34:26.508 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:34:26.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:34:26.508 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:26.508 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:26.508 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:34:26.698 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28524 787
17-03-17 19:34:26.708 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:34:26.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:34:26.848 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:34:26.888 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:34:26.888 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:34:26.888 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:26.888 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:34:26.888 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:34:26.888 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:26.888 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:26.888 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:34:26.888 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:26.898 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:34:27.038 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:34:27.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:34:27.038 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:27.048 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:27.048 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 19:34:27.048 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:34:27.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:34:27.048 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:27.048 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:27.048 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 19:34:27.228 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:34:27.228 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:34:27.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28524 150' command took 2 ms to send, 1318 ms to get response, and 1329 ms overall
17-03-17 19:34:27.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:34:27.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129760519647382. ------
17-03-17 19:34:27.238 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:27.238 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13641 mm
17-03-17 19:34:27.238 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:34:27.238 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:27.238 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:34:27.238 -07 000000475 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 19:34:27.238 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29799, sync = True, waitForSettling = False)
17-03-17 19:34:27.238 -07 000000012 INF: Z Motor: Moving to -0.136411 mm, started at -0.129761 mm, distance = -6.65 um
17-03-17 19:34:27.248 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:34:27.248 -07 000000012 INF: FPGA: Xmit ZDACW 29799\n [Z Motor]
17-03-17 19:34:27.248 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:34:27.258 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:27.258 -07 000000012 INF: FPGA: 'ZDACW 29799' command took 5 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:27.258 -07 000000608 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:34:27.268 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:34:27.268 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:34:27.268 -07 000000475 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:27.268 -07 000000475 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:34:27.268 -07 000000475 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:34:27.278 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:27.278 -07 000000502 INF: FPGA: Recv ZDACR 29799
17-03-17 19:34:27.288 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:34:27.288 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:34:27.288 -07 000000012 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 19:34:27.448 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 19:34:27.448 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:34:27.448 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:27.448 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 19:34:27.448 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:34:27.448 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:27.448 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:27.448 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 19:34:27.458 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:27.458 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:34:27.468 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:34:27.468 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 217 ms overall
17-03-17 19:34:27.658 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 19:34:27.658 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:34:27.698 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:27.698 -07 000000626 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:34:27.708 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:34:27.708 -07 000000475 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:27.708 -07 000000475 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:34:27.708 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 19:34:28.658 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:28.658 -07 000000593 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:34:28.668 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:28.668 -07 000000475 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:28.688 -07 000000475 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:34:28.688 -07 000000475 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:34:28.688 -07 000000475 INF: Y Motor: Moved to 71.5195 after 1444 ms (table move)
17-03-17 19:34:28.688 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136411 mm (DAC = 29799)
17-03-17 19:34:28.688 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:28.688 -07 000000478 INF: FPGA: Recv ZSGSRD 30527
17-03-17 19:34:28.698 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:34:28.698 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:28.698 -07 000000475 INF: FPGA: Recv ZSGSRD 30524
17-03-17 19:34:28.708 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:28.708 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:28.708 -07 000000462 INF: FPGA: Recv ZSGSRD 30518
17-03-17 19:34:28.718 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:28.718 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:28.718 -07 000000478 INF: FPGA: Recv ZSGSRD 30523
17-03-17 19:34:28.728 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:28.728 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:28.728 -07 000000482 INF: FPGA: Recv ZSGSRD 30530
17-03-17 19:34:28.738 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:28.738 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:28.738 -07 000000478 INF: FPGA: Recv ZSGSRD 30527
17-03-17 19:34:28.748 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:28.748 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:28.748 -07 000000482 INF: FPGA: Recv ZSGSRD 30526
17-03-17 19:34:28.758 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:28.758 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:28.758 -07 000000478 INF: FPGA: Recv ZSGSRD 30520
17-03-17 19:34:28.768 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:28.768 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:28.768 -07 000000502 INF: FPGA: Recv ZSGSRD 30520
17-03-17 19:34:28.778 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:28.778 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:28.778 -07 000000551 INF: FPGA: Recv ZSGSRD 30523
17-03-17 19:34:28.788 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:28.788 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:28.788 -07 000000478 INF: FPGA: Recv ZPIEZORD 26491
17-03-17 19:34:28.798 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:28.798 -07 000000501 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -8.9 V.
17-03-17 19:34:28.798 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30524 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30524 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30518 (-135.6 uncal um), Max = 30530 (-135.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:34:28.798 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30524, posNoise = 6, negNoise = 6
17-03-17 19:34:28.798 -07 000000501 INF: Z Motor: After move to -0.136411, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:28.798 -07 000000501 INF: Z Motor: Settle wait time = 1447 ms, measure time = 104 ms (allowed 150 ms), total time = 1551 ms
17-03-17 19:34:28.798 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:34:28.848 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 19:34:28.848 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:34:28.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:28.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:28.848 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:28.848 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:28.848 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:34:28.848 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:28.858 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:28.858 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:34:28.858 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:34:28.858 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:34:28.868 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:34:28.868 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:34:28.868 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:34:28.918 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:34:29.118 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:34:29.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:34:29.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:34:29.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) start.
17-03-17 19:34:29.158 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:34:29.158 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 19:34:29.158 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 19:34:29.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:34:29.248 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:29.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:34:29.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:34:29.258 -07 000000626 INF: Autofocus start
17-03-17 19:34:29.258 -07 000000626 INF: MeasureProfile start
17-03-17 19:34:29.258 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:29.258 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:29.268 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:34:29.268 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:34:29.268 -07 000000626 INF: MeasureProfile done
17-03-17 19:34:29.268 -07 000000626 INF: X=-2  Z correction [um]=-0.01313862
17-03-17 19:34:29.268 -07 000000626 INF: Autofocus finished
17-03-17 19:34:29.468 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:34:29.468 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 19:34:29.478 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.136416003426246. ----------
17-03-17 19:34:29.478 -07 000000610 INF: Cycle	27	Tile	15	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:34:29.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28309, sync = True, waitForSettling = True)
17-03-17 19:34:29.478 -07 000000610 INF: Z Motor: Moving to -0.129590 mm, started at -0.136416 mm, distance = 6.83 um
17-03-17 19:34:29.478 -07 000000610 INF: FPGA: Xmit ZDACW 28309\n [Z Motor]
17-03-17 19:34:29.488 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:34:29.488 -07 000000610 INF: FPGA: 'ZDACW 28309' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:34:29.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:29.488 -07 000000462 INF: FPGA: Recv ZDACR 28309
17-03-17 19:34:29.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:29.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:34:29.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:29.648 -07 000000501 INF: FPGA: Recv ZSGSRD 29465
17-03-17 19:34:29.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:29.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:29.658 -07 000000512 INF: FPGA: Recv ZSGSRD 29467
17-03-17 19:34:29.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:29.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:29.668 -07 000000593 INF: FPGA: Recv ZSGSRD 29460
17-03-17 19:34:29.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:29.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:29.678 -07 000000478 INF: FPGA: Recv ZSGSRD 29458
17-03-17 19:34:29.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:29.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:29.688 -07 000000482 INF: FPGA: Recv ZSGSRD 29463
17-03-17 19:34:29.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:29.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:29.698 -07 000000512 INF: FPGA: Recv ZSGSRD 29462
17-03-17 19:34:29.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:29.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:29.708 -07 000000593 INF: FPGA: Recv ZSGSRD 29464
17-03-17 19:34:29.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:29.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:29.718 -07 000000462 INF: FPGA: Recv ZSGSRD 29458
17-03-17 19:34:29.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:29.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:29.728 -07 000000482 INF: FPGA: Recv ZSGSRD 29464
17-03-17 19:34:29.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:29.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:29.738 -07 000000608 INF: FPGA: Recv ZSGSRD 29464
17-03-17 19:34:29.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:29.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:29.748 -07 000000482 INF: FPGA: Recv ZPIEZORD 25125
17-03-17 19:34:29.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:34:29.758 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -9.5 V.
17-03-17 19:34:29.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29462 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29464 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29458 (-128.8 uncal um), Max = 29467 (-128.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:34:29.758 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29462, posNoise = 5, negNoise = 4
17-03-17 19:34:29.758 -07 000000610 INF: Z Motor: After move to -0.129590, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:29.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 19:34:29.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:29.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:29.758 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:29.758 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:29.758 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:34:29.758 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:34:29.758 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:34:29.758 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:29.758 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:34:29.758 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:34:29.758 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:29.758 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:34:29.758 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:34:29.758 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:34:29.768 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:34:29.768 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:34:29.768 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:34:29.768 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:34:29.778 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:34:29.778 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:34:29.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28486 150\n [Camera]
17-03-17 19:34:29.978 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:34:30.378 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:34:30.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:34:30.378 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:30.378 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:30.378 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 19:34:30.378 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:34:30.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:34:30.378 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:30.378 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:30.378 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 19:34:30.568 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28486 787
17-03-17 19:34:30.718 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:34:30.758 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:34:30.758 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:34:30.758 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:30.768 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:34:30.768 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:34:30.768 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:30.768 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:30.768 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:30.768 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:34:30.778 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:34:30.908 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:34:30.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:34:30.918 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:31.038 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:34:31.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:34:31.038 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:31.038 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:31.038 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 19:34:31.048 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:31.048 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:34:31.108 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:34:31.108 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:34:31.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28486 150' command took 3 ms to send, 1322 ms to get response, and 1330 ms overall
17-03-17 19:34:31.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:34:31.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.129593490131696. ------
17-03-17 19:34:31.108 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:31.108 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13558 mm
17-03-17 19:34:31.108 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:34:31.118 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:31.118 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:34:31.118 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:34:31.118 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:34:31.118 -07 000000482 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 19:34:31.118 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29618, sync = True, waitForSettling = False)
17-03-17 19:34:31.118 -07 000000431 INF: Z Motor: Moving to -0.135583 mm, started at -0.129593 mm, distance = -5.99 um
17-03-17 19:34:31.128 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:31.128 -07 000000501 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:34:31.138 -07 000000431 INF: FPGA: Xmit ZDACW 29618\n [Z Motor]
17-03-17 19:34:31.138 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:34:31.138 -07 000000482 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:31.138 -07 000000482 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:34:31.138 -07 000000482 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:34:31.138 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:34:31.148 -07 000000431 INF: FPGA: 'ZDACW 29618' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:34:31.148 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:34:31.158 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:31.158 -07 000000512 INF: FPGA: Recv ZDACR 29618
17-03-17 19:34:31.168 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:34:31.168 -07 000000431 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 19:34:31.318 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:34:31.318 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:34:31.418 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.98264,
17-03-17 19:34:31.428 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:34:31.428 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:34:31.428 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:31.428 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:34:31.438 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:34:31.438 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:34:31.438 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:31.438 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:34:31.438 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 19:34:31.438 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:34:31.518 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 19:34:31.518 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:34:31.558 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:31.558 -07 000000512 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:34:31.568 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:34:31.568 -07 000000482 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:31.568 -07 000000482 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:34:31.568 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.178 mm/sec
17-03-17 19:34:31.698 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:34:31.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:34:32.518 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:32.518 -07 000000431 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:34:32.528 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:32.528 -07 000000482 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:32.548 -07 000000482 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:34:32.548 -07 000000482 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:34:32.548 -07 000000482 INF: Y Motor: Moved to 72.3496 after 1430 ms (table move)
17-03-17 19:34:32.548 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135583 mm (DAC = 29618)
17-03-17 19:34:32.548 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:32.548 -07 000000569 INF: FPGA: Recv ZSGSRD 30398
17-03-17 19:34:32.558 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:34:32.558 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:32.558 -07 000000482 INF: FPGA: Recv ZSGSRD 30392
17-03-17 19:34:32.568 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:32.568 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:32.568 -07 000000569 INF: FPGA: Recv ZSGSRD 30399
17-03-17 19:34:32.578 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:32.578 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:32.578 -07 000000482 INF: FPGA: Recv ZSGSRD 30398
17-03-17 19:34:32.588 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:32.588 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:32.588 -07 000000569 INF: FPGA: Recv ZSGSRD 30399
17-03-17 19:34:32.598 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:32.598 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:32.598 -07 000000482 INF: FPGA: Recv ZSGSRD 30396
17-03-17 19:34:32.608 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:32.608 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:32.608 -07 000000569 INF: FPGA: Recv ZSGSRD 30395
17-03-17 19:34:32.618 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:32.618 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:32.618 -07 000000482 INF: FPGA: Recv ZSGSRD 30396
17-03-17 19:34:32.628 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:32.628 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:32.628 -07 000000431 INF: FPGA: Recv ZSGSRD 30389
17-03-17 19:34:32.638 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:32.638 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:32.638 -07 000000608 INF: FPGA: Recv ZSGSRD 30390
17-03-17 19:34:32.648 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:32.648 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:32.648 -07 000000626 INF: FPGA: Recv ZPIEZORD 26379
17-03-17 19:34:32.658 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:32.658 -07 000000593 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.519 V. Piezo Error = -8.8 V.
17-03-17 19:34:32.658 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30395 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30396 (-134.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30389 (-134.8 uncal um), Max = 30399 (-134.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:34:32.658 -07 000000593 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30395, posNoise = 4, negNoise = 6
17-03-17 19:34:32.658 -07 000000593 INF: Z Motor: After move to -0.135583, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:32.658 -07 000000593 INF: Z Motor: Settle wait time = 1433 ms, measure time = 105 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:34:32.658 -07 000000593 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:34:32.708 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 19:34:32.708 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:34:32.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:32.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:32.708 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:32.708 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:32.708 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:34:32.708 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:32.708 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:32.708 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:34:32.718 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:34:32.718 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:34:32.728 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:34:32.728 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:34:32.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:34:32.778 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:34:32.978 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:34:32.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:34:32.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:34:32.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 19:34:33.018 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:34:33.018 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 19:34:33.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:34:33.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 19:34:33.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:33.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:34:33.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 19:34:33.118 -07 000000569 INF: Autofocus start
17-03-17 19:34:33.118 -07 000000569 INF: MeasureProfile start
17-03-17 19:34:33.118 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:33.118 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:33.128 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:34:33.128 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:34:33.128 -07 000000569 INF: MeasureProfile done
17-03-17 19:34:33.128 -07 000000569 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:34:33.128 -07 000000569 INF: Autofocus finished
17-03-17 19:34:33.328 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:34:33.328 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:34:33.328 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135587280059959. ----------
17-03-17 19:34:33.328 -07 000000610 INF: Cycle	27	Tile	16	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:34:33.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28112, sync = True, waitForSettling = True)
17-03-17 19:34:33.338 -07 000000610 INF: Z Motor: Moving to -0.128688 mm, started at -0.135587 mm, distance = 6.90 um
17-03-17 19:34:33.338 -07 000000610 INF: FPGA: Xmit ZDACW 28112\n [Z Motor]
17-03-17 19:34:33.338 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:34:33.348 -07 000000610 INF: FPGA: 'ZDACW 28112' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:34:33.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:33.348 -07 000000431 INF: FPGA: Recv ZDACR 28112
17-03-17 19:34:33.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:33.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:34:33.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:33.508 -07 000000478 INF: FPGA: Recv ZSGSRD 29325
17-03-17 19:34:33.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:33.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:33.518 -07 000000502 INF: FPGA: Recv ZSGSRD 29317
17-03-17 19:34:33.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:33.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:33.528 -07 000000462 INF: FPGA: Recv ZSGSRD 29323
17-03-17 19:34:33.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:33.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:33.538 -07 000000431 INF: FPGA: Recv ZSGSRD 29323
17-03-17 19:34:33.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:33.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:33.548 -07 000000478 INF: FPGA: Recv ZSGSRD 29313
17-03-17 19:34:33.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:33.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:33.558 -07 000000012 INF: FPGA: Recv ZSGSRD 29323
17-03-17 19:34:33.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:33.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:33.568 -07 000000569 INF: FPGA: Recv ZSGSRD 29322
17-03-17 19:34:33.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:33.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:33.578 -07 000000431 INF: FPGA: Recv ZSGSRD 29323
17-03-17 19:34:33.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:33.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:33.588 -07 000000478 INF: FPGA: Recv ZSGSRD 29324
17-03-17 19:34:33.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:33.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:33.598 -07 000000512 INF: FPGA: Recv ZSGSRD 29322
17-03-17 19:34:33.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:33.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:33.608 -07 000000462 INF: FPGA: Recv ZPIEZORD 24975
17-03-17 19:34:33.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:33.618 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.290 V. Piezo Error = -9.5 V.
17-03-17 19:34:33.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29322 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29323 (-127.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29313 (-127.9 uncal um), Max = 29325 (-127.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:34:33.618 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29322, posNoise = 3, negNoise = 9
17-03-17 19:34:33.618 -07 000000610 INF: Z Motor: After move to -0.128688, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:33.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:34:33.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:33.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:33.618 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:33.618 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:33.618 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:34:33.618 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:33.618 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:34:33.618 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:34:33.618 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:34:33.618 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:34:33.618 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:34:33.618 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:34:33.628 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:34:33.628 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:34:33.628 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:34:33.628 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:34:33.628 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:34:33.628 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:34:33.638 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:34:33.638 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:34:33.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28289 150\n [Camera]
17-03-17 19:34:33.838 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:34:34.238 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:34:34.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:34:34.248 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:34.248 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:34:34.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:34:34.248 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:34.248 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-17 19:34:34.248 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:34.258 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:34.258 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) start.
17-03-17 19:34:34.428 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28289 787
17-03-17 19:34:34.578 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:34:34.628 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 19:34:34.628 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:34:34.628 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:34.628 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:34:34.628 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:34:34.628 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:34.628 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:34:34.628 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:34:34.628 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:34.638 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:34:34.778 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:34:34.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:34:34.778 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:34.888 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:34:34.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:34:34.888 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:34.898 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:34.898 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) start.
17-03-17 19:34:34.898 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:34.898 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:34:34.968 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:34:34.968 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:34:34.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28289 150' command took 2 ms to send, 1324 ms to get response, and 1332 ms overall
17-03-17 19:34:34.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:34:34.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.12869410043185. ------
17-03-17 19:34:34.968 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:34.968 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13528 mm
17-03-17 19:34:34.968 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:34:34.978 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:34:34.978 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:34.978 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-17 19:34:34.978 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29552, sync = True, waitForSettling = False)
17-03-17 19:34:34.978 -07 000000502 INF: Z Motor: Moving to -0.135280 mm, started at -0.128694 mm, distance = -6.59 um
17-03-17 19:34:34.978 -07 000000502 INF: FPGA: Xmit ZDACW 29552\n [Z Motor]
17-03-17 19:34:34.978 -07 000000431 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 19:34:34.978 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:34:34.988 -07 000000502 INF: FPGA: 'ZDACW 29552' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:34:34.988 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:34.988 -07 000000569 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:34:34.998 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:34:34.998 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:34:34.998 -07 000000431 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:34.998 -07 000000431 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:34:34.998 -07 000000431 INF: Y Motor: Moving 1349 steps-27
17-03-17 19:34:35.008 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:35.008 -07 000000608 INF: FPGA: Recv ZDACR 29552
17-03-17 19:34:35.018 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:34:35.018 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:34:35.018 -07 000000502 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:34:35.198 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:34:35.198 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 19:34:35.298 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:34:35.298 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:34:35.298 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:35.298 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:34:35.298 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:34:35.298 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:35.298 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:35.298 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 19:34:35.298 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:35.308 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 19:34:35.388 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:34:35.388 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 19:34:35.428 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:35.428 -07 000000626 INF: FPGA: Recv YRDPOS 149864
17-03-17 19:34:35.438 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:34:35.438 -07 000000431 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:35.438 -07 000000431 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 19:34:35.438 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.843 mm, average velocity = 2.129 mm/sec
17-03-17 19:34:36.388 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:36.388 -07 000000569 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:34:36.398 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:36.398 -07 000000431 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:36.418 -07 000000431 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:34:36.418 -07 000000431 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:34:36.418 -07 000000431 INF: Y Motor: Moved to 73.1763 after 1438 ms (table move)
17-03-17 19:34:36.418 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135280 mm (DAC = 29552)
17-03-17 19:34:36.418 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:36.418 -07 000000482 INF: FPGA: Recv ZSGSRD 30348
17-03-17 19:34:36.428 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:34:36.428 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:36.428 -07 000000502 INF: FPGA: Recv ZSGSRD 30338
17-03-17 19:34:36.438 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:36.438 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:36.438 -07 000000475 INF: FPGA: Recv ZSGSRD 30344
17-03-17 19:34:36.448 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:36.448 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:36.448 -07 000000482 INF: FPGA: Recv ZSGSRD 30352
17-03-17 19:34:36.458 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:36.458 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:36.458 -07 000000475 INF: FPGA: Recv ZSGSRD 30351
17-03-17 19:34:36.468 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:36.478 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:36.478 -07 000000569 INF: FPGA: Recv ZSGSRD 30348
17-03-17 19:34:36.488 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:34:36.488 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:36.488 -07 000000512 INF: FPGA: Recv ZSGSRD 30348
17-03-17 19:34:36.498 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:36.498 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:36.498 -07 000000012 INF: FPGA: Recv ZSGSRD 30342
17-03-17 19:34:36.508 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:36.508 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:36.508 -07 000000569 INF: FPGA: Recv ZSGSRD 30338
17-03-17 19:34:36.518 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:36.518 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:36.518 -07 000000012 INF: FPGA: Recv ZSGSRD 30349
17-03-17 19:34:36.528 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:36.528 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:36.528 -07 000000608 INF: FPGA: Recv ZPIEZORD 26350
17-03-17 19:34:36.538 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:36.538 -07 000000478 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.509 V. Piezo Error = -8.8 V.
17-03-17 19:34:36.538 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30346 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30348 (-134.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30338 (-134.4 uncal um), Max = 30352 (-134.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:34:36.538 -07 000000478 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30346, posNoise = 6, negNoise = 8
17-03-17 19:34:36.538 -07 000000478 INF: Z Motor: After move to -0.135280, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:36.538 -07 000000478 INF: Z Motor: Settle wait time = 1442 ms, measure time = 115 ms (allowed 150 ms), total time = 1557 ms
17-03-17 19:34:36.538 -07 000000478 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-17 19:34:36.578 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 19:34:36.578 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:34:36.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:36.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:36.578 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:36.578 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:36.578 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:34:36.578 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:36.578 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:36.578 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:34:36.588 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:34:36.588 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:34:36.598 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:34:36.598 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:34:36.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:34:36.648 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:34:36.698 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:34:36.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:34:36.788 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 3.988112,
17-03-17 19:34:36.848 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:34:36.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:34:36.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:34:36.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2617114384, 0x0, 559484976) start.
17-03-17 19:34:36.888 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:34:36.888 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 19:34:36.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 286 ms overall
17-03-17 19:34:36.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2617114384, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:34:36.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:36.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:34:36.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:34:36.988 -07 000000512 INF: Autofocus start
17-03-17 19:34:36.988 -07 000000512 INF: MeasureProfile start
17-03-17 19:34:36.988 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:36.988 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:36.998 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:34:36.998 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:34:36.998 -07 000000512 INF: MeasureProfile done
17-03-17 19:34:36.998 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:34:36.998 -07 000000512 INF: Autofocus finished
17-03-17 19:34:37.198 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:34:37.198 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:34:37.198 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135272493665013. ----------
17-03-17 19:34:37.208 -07 000000610 INF: Cycle	27	Tile	17	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:34:37.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28060, sync = True, waitForSettling = True)
17-03-17 19:34:37.208 -07 000000610 INF: Z Motor: Moving to -0.128450 mm, started at -0.135272 mm, distance = 6.82 um
17-03-17 19:34:37.208 -07 000000610 INF: FPGA: Xmit ZDACW 28060\n [Z Motor]
17-03-17 19:34:37.208 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:34:37.218 -07 000000610 INF: FPGA: 'ZDACW 28060' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:34:37.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:37.218 -07 000000431 INF: FPGA: Recv ZDACR 28060
17-03-17 19:34:37.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:37.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:34:37.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:37.378 -07 000000482 INF: FPGA: Recv ZSGSRD 29284
17-03-17 19:34:37.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:37.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:37.388 -07 000000478 INF: FPGA: Recv ZSGSRD 29288
17-03-17 19:34:37.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:37.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:37.398 -07 000000462 INF: FPGA: Recv ZSGSRD 29287
17-03-17 19:34:37.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:37.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:37.408 -07 000000501 INF: FPGA: Recv ZSGSRD 29285
17-03-17 19:34:37.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:37.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:37.418 -07 000000482 INF: FPGA: Recv ZSGSRD 29288
17-03-17 19:34:37.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:37.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:37.428 -07 000000478 INF: FPGA: Recv ZSGSRD 29285
17-03-17 19:34:37.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:37.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:37.438 -07 000000626 INF: FPGA: Recv ZSGSRD 29285
17-03-17 19:34:37.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:37.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:37.448 -07 000000501 INF: FPGA: Recv ZSGSRD 29286
17-03-17 19:34:37.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:37.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:37.458 -07 000000482 INF: FPGA: Recv ZSGSRD 29287
17-03-17 19:34:37.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:37.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:37.468 -07 000000478 INF: FPGA: Recv ZSGSRD 29282
17-03-17 19:34:37.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:37.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:37.478 -07 000000475 INF: FPGA: Recv ZPIEZORD 24945
17-03-17 19:34:37.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:37.488 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.282 V. Piezo Error = -9.5 V.
17-03-17 19:34:37.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29286 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29286 (-127.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29282 (-127.7 uncal um), Max = 29288 (-127.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:34:37.488 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29286, posNoise = 2, negNoise = 4
17-03-17 19:34:37.488 -07 000000610 INF: Z Motor: After move to -0.128450, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:37.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:34:37.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:37.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:37.488 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:37.488 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:34:37.488 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:34:37.488 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:34:37.488 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:37.488 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:37.488 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:34:37.488 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:34:37.488 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:37.488 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:34:37.498 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:34:37.498 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:34:37.498 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:34:37.498 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:34:37.498 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:34:37.498 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:34:37.508 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:34:37.508 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:34:37.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28236 150\n [Camera]
17-03-17 19:34:37.708 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:34:38.108 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:34:38.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:34:38.108 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:38.108 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:34:38.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:34:38.118 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:38.118 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:38.118 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:34:38.118 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:38.118 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:34:38.308 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28236 787
17-03-17 19:34:38.448 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:34:38.488 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 19:34:38.488 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 19:34:38.488 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:38.488 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:34:38.488 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:34:38.488 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:38.498 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:34:38.498 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:34:38.498 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:34:38.498 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:34:38.648 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1131
17-03-17 19:34:38.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1131
17-03-17 19:34:38.648 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:38.758 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1131
17-03-17 19:34:38.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1131
17-03-17 19:34:38.758 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:38.768 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:38.768 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:38.768 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:34:38.768 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:34:38.838 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-17 19:34:38.838 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:34:38.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28236 150' command took 2 ms to send, 1324 ms to get response, and 1329 ms overall
17-03-17 19:34:38.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:34:38.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128462828794746. ------
17-03-17 19:34:38.838 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:38.838 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13482 mm
17-03-17 19:34:38.838 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:34:38.848 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:38.848 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:34:38.848 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29451, sync = True, waitForSettling = False)
17-03-17 19:34:38.848 -07 000000551 INF: Z Motor: Moving to -0.134818 mm, started at -0.128463 mm, distance = -6.36 um
17-03-17 19:34:38.848 -07 000000551 INF: FPGA: Xmit ZDACW 29451\n [Z Motor]
17-03-17 19:34:38.848 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:34:38.848 -07 000000501 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 19:34:38.848 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:34:38.858 -07 000000551 INF: FPGA: 'ZDACW 29451' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:34:38.858 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:38.858 -07 000000462 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:34:38.868 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:34:38.868 -07 000000501 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:38.868 -07 000000501 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:34:38.868 -07 000000501 INF: Y Motor: Moving 1354 steps-34
17-03-17 19:34:38.868 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:34:38.878 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:38.878 -07 000000431 INF: FPGA: Recv ZDACR 29451
17-03-17 19:34:38.888 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:34:38.888 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:34:38.888 -07 000000551 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:34:39.068 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:34:39.068 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 223 ms overall
17-03-17 19:34:39.138 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:34:39.138 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:34:39.138 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:39.138 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:34:39.148 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:34:39.148 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:34:39.148 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:39.148 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:39.148 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 499 ms.
17-03-17 19:34:39.148 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:34:39.258 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 19:34:39.258 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:34:39.288 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:39.288 -07 000000593 INF: FPGA: Recv YRDPOS 151568
17-03-17 19:34:39.298 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:34:39.298 -07 000000501 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:39.298 -07 000000501 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:34:39.298 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec
17-03-17 19:34:40.248 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:40.248 -07 000000482 INF: FPGA: Recv YRDPOS 151568
17-03-17 19:34:40.258 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:40.258 -07 000000501 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:40.268 -07 000000501 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:34:40.268 -07 000000501 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:34:40.268 -07 000000501 INF: Y Motor: Moved to 74.0078 after 1422 ms (table move)
17-03-17 19:34:40.278 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134818 mm (DAC = 29451)
17-03-17 19:34:40.278 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:40.278 -07 000000462 INF: FPGA: Recv ZSGSRD 30280
17-03-17 19:34:40.288 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:40.288 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:40.288 -07 000000626 INF: FPGA: Recv ZSGSRD 30273
17-03-17 19:34:40.298 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:40.298 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:40.298 -07 000000478 INF: FPGA: Recv ZSGSRD 30272
17-03-17 19:34:40.308 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:40.308 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:40.308 -07 000000626 INF: FPGA: Recv ZSGSRD 30278
17-03-17 19:34:40.318 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:40.318 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:40.318 -07 000000475 INF: FPGA: Recv ZSGSRD 30280
17-03-17 19:34:40.328 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:40.328 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:40.328 -07 000000012 INF: FPGA: Recv ZSGSRD 30282
17-03-17 19:34:40.338 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:40.338 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:40.338 -07 000000478 INF: FPGA: Recv ZSGSRD 30271
17-03-17 19:34:40.348 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:40.348 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:40.348 -07 000000012 INF: FPGA: Recv ZSGSRD 30270
17-03-17 19:34:40.358 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:40.358 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:40.358 -07 000000482 INF: FPGA: Recv ZSGSRD 30271
17-03-17 19:34:40.368 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:40.368 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:40.368 -07 000000626 INF: FPGA: Recv ZSGSRD 30273
17-03-17 19:34:40.378 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:40.378 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:40.378 -07 000000478 INF: FPGA: Recv ZPIEZORD 26220
17-03-17 19:34:40.388 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:40.388 -07 000000502 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.494 V. Piezo Error = -8.9 V.
17-03-17 19:34:40.388 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30275 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30273 (-134.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30270 (-134.0 uncal um), Max = 30282 (-134.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:34:40.388 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30275, posNoise = 7, negNoise = 5
17-03-17 19:34:40.388 -07 000000502 INF: Z Motor: After move to -0.134818, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:40.388 -07 000000502 INF: Z Motor: Settle wait time = 1427 ms, measure time = 110 ms (allowed 150 ms), total time = 1537 ms
17-03-17 19:34:40.388 -07 000000502 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 19:34:40.428 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 19:34:40.428 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:34:40.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:40.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:40.428 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:40.428 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:40.428 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:34:40.428 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:40.428 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:40.428 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:34:40.438 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:34:40.438 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:34:40.448 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:34:40.448 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:34:40.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:34:40.498 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:34:40.698 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:34:40.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:34:40.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:34:40.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:34:40.738 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:34:40.738 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 19:34:40.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 19:34:40.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:34:40.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:40.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:34:40.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:34:40.838 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:40.838 -07 000000501 INF: Autofocus start
17-03-17 19:34:40.838 -07 000000501 INF: MeasureProfile start
17-03-17 19:34:40.848 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:40.848 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 19:34:40.848 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:34:40.848 -07 000000501 INF: MeasureProfile done
17-03-17 19:34:40.848 -07 000000501 INF: X=10  Z correction [um]=0.02415557
17-03-17 19:34:40.848 -07 000000501 INF: Autofocus finished
17-03-17 19:34:41.048 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:34:41.048 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:34:41.058 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.134816374602948. ----------
17-03-17 19:34:41.058 -07 000000610 INF: Cycle	27	Tile	18	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:34:41.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27969, sync = True, waitForSettling = True)
17-03-17 19:34:41.058 -07 000000610 INF: Z Motor: Moving to -0.128034 mm, started at -0.134816 mm, distance = 6.78 um
17-03-17 19:34:41.058 -07 000000610 INF: FPGA: Xmit ZDACW 27969\n [Z Motor]
17-03-17 19:34:41.058 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:34:41.068 -07 000000610 INF: FPGA: 'ZDACW 27969' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:34:41.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:41.068 -07 000000478 INF: FPGA: Recv ZDACR 27969
17-03-17 19:34:41.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:41.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:34:41.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:41.228 -07 000000593 INF: FPGA: Recv ZSGSRD 29219
17-03-17 19:34:41.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:41.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:41.238 -07 000000551 INF: FPGA: Recv ZSGSRD 29223
17-03-17 19:34:41.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:41.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:41.248 -07 000000475 INF: FPGA: Recv ZSGSRD 29223
17-03-17 19:34:41.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:41.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:41.258 -07 000000626 INF: FPGA: Recv ZSGSRD 29224
17-03-17 19:34:41.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:41.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:41.268 -07 000000512 INF: FPGA: Recv ZSGSRD 29216
17-03-17 19:34:41.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:41.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:41.278 -07 000000551 INF: FPGA: Recv ZSGSRD 29216
17-03-17 19:34:41.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:34:41.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:41.288 -07 000000012 INF: FPGA: Recv ZSGSRD 29216
17-03-17 19:34:41.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:41.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:41.298 -07 000000482 INF: FPGA: Recv ZSGSRD 29217
17-03-17 19:34:41.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:41.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:41.308 -07 000000608 INF: FPGA: Recv ZSGSRD 29219
17-03-17 19:34:41.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:41.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:41.318 -07 000000478 INF: FPGA: Recv ZSGSRD 29215
17-03-17 19:34:41.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:41.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:41.328 -07 000000551 INF: FPGA: Recv ZPIEZORD 24866
17-03-17 19:34:41.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:41.338 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.268 V. Piezo Error = -9.6 V.
17-03-17 19:34:41.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29219 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29218 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29215 (-127.2 uncal um), Max = 29224 (-127.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:34:41.338 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29219, posNoise = 5, negNoise = 4
17-03-17 19:34:41.338 -07 000000610 INF: Z Motor: After move to -0.128034, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:41.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:34:41.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:41.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:41.338 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:41.338 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:34:41.338 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:34:41.338 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:41.338 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:34:41.338 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:41.338 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:34:41.338 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:34:41.338 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:41.338 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:34:41.348 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:34:41.348 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:34:41.348 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:34:41.348 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:34:41.358 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:34:41.358 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:34:41.358 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 19:34:41.358 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:34:41.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28145 150\n [Camera]
17-03-17 19:34:41.558 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:34:41.698 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:34:41.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:34:41.958 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:34:41.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:34:41.958 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:34:41.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:34:41.968 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:41.968 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:41.968 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:41.968 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:34:41.968 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:41.968 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:34:42.148 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28145 787
17-03-17 19:34:42.158 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.039839,
17-03-17 19:34:42.308 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:34:42.338 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 19:34:42.338 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:34:42.338 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:42.348 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:34:42.348 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:34:42.348 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:34:42.348 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:42.348 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:34:42.348 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:34:42.348 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:34:42.498 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:34:42.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:34:42.498 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:42.608 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:34:42.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:34:42.608 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:42.618 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:42.618 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:34:42.618 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:42.618 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:34:42.688 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:34:42.688 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:34:42.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28145 150' command took 2 ms to send, 1324 ms to get response, and 1329 ms overall
17-03-17 19:34:42.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:34:42.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.128032406581248. ------
17-03-17 19:34:42.688 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:42.698 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13444 mm
17-03-17 19:34:42.698 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:34:42.698 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:42.698 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29369, sync = True, waitForSettling = False)
17-03-17 19:34:42.698 -07 000000608 INF: Z Motor: Moving to -0.134443 mm, started at -0.128032 mm, distance = -6.41 um
17-03-17 19:34:42.698 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:34:42.698 -07 000000501 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 19:34:42.708 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:42.708 -07 000000608 INF: FPGA: Xmit ZDACW 29369\n [Z Motor]
17-03-17 19:34:42.708 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:34:42.718 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:42.718 -07 000000608 INF: FPGA: 'ZDACW 29369' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:34:42.718 -07 000000593 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:34:42.728 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:34:42.728 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:34:42.728 -07 000000501 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:42.728 -07 000000501 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:34:42.728 -07 000000501 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:34:42.738 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:42.738 -07 000000626 INF: FPGA: Recv ZDACR 29369
17-03-17 19:34:42.748 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:34:42.748 -07 000000608 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 19:34:42.748 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:34:42.928 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:34:42.928 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:34:43.008 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 19:34:43.008 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:34:43.008 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:43.008 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:34:43.008 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:34:43.008 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:43.008 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:43.008 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:43.008 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 19:34:43.018 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:34:43.118 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 19:34:43.118 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:34:43.148 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:43.148 -07 000000502 INF: FPGA: Recv YRDPOS 153256
17-03-17 19:34:43.158 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:43.158 -07 000000501 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:43.158 -07 000000501 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 19:34:43.158 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.150 mm/sec
17-03-17 19:34:44.108 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:44.108 -07 000000569 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:34:44.118 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:44.118 -07 000000501 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:44.128 -07 000000501 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:34:44.128 -07 000000501 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:34:44.128 -07 000000501 INF: Y Motor: Moved to 74.8325 after 1431 ms (table move)
17-03-17 19:34:44.128 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134443 mm (DAC = 29369)
17-03-17 19:34:44.128 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:44.138 -07 000000462 INF: FPGA: Recv ZSGSRD 30217
17-03-17 19:34:44.138 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:34:44.138 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:44.138 -07 000000512 INF: FPGA: Recv ZSGSRD 30222
17-03-17 19:34:44.148 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:34:44.148 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:44.148 -07 000000462 INF: FPGA: Recv ZSGSRD 30215
17-03-17 19:34:44.158 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:44.158 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:44.158 -07 000000482 INF: FPGA: Recv ZSGSRD 30211
17-03-17 19:34:44.168 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:44.168 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:44.168 -07 000000608 INF: FPGA: Recv ZSGSRD 30216
17-03-17 19:34:44.178 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:44.178 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:44.178 -07 000000462 INF: FPGA: Recv ZSGSRD 30222
17-03-17 19:34:44.188 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:44.188 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:44.188 -07 000000482 INF: FPGA: Recv ZSGSRD 30217
17-03-17 19:34:44.198 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:44.198 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:44.198 -07 000000512 INF: FPGA: Recv ZSGSRD 30225
17-03-17 19:34:44.208 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:44.208 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:44.208 -07 000000482 INF: FPGA: Recv ZSGSRD 30221
17-03-17 19:34:44.218 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:44.218 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:44.218 -07 000000608 INF: FPGA: Recv ZSGSRD 30212
17-03-17 19:34:44.228 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:44.228 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:44.228 -07 000000608 INF: FPGA: Recv ZPIEZORD 26152
17-03-17 19:34:44.238 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:44.238 -07 000000478 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.481 V. Piezo Error = -8.9 V.
17-03-17 19:34:44.238 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30218 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30217 (-133.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30211 (-133.6 uncal um), Max = 30225 (-133.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:34:44.238 -07 000000478 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30218, posNoise = 7, negNoise = 7
17-03-17 19:34:44.238 -07 000000478 INF: Z Motor: After move to -0.134443, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:44.238 -07 000000478 INF: Z Motor: Settle wait time = 1434 ms, measure time = 104 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:34:44.238 -07 000000478 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:34:44.288 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 19:34:44.288 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:34:44.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:44.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:44.288 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:44.288 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:44.288 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:34:44.288 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:44.288 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:44.288 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:34:44.298 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:34:44.298 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:34:44.308 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:34:44.308 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:34:44.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:34:44.358 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:34:44.558 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:34:44.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:34:44.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:34:44.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:34:44.598 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:34:44.598 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:34:44.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 19:34:44.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:34:44.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:44.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:34:44.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:34:44.698 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:34:44.698 -07 000000512 INF: Autofocus start
17-03-17 19:34:44.698 -07 000000512 INF: MeasureProfile start
17-03-17 19:34:44.698 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:34:44.708 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:34:44.708 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:34:44.708 -07 000000512 INF: MeasureProfile done
17-03-17 19:34:44.708 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:34:44.708 -07 000000512 INF: Autofocus finished
17-03-17 19:34:44.908 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:34:44.908 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 19:34:44.908 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134450194510868. ----------
17-03-17 19:34:44.918 -07 000000610 INF: Cycle	27	Tile	19	Exposure Settings		A	402	G	193	T	193	C	402
17-03-17 19:34:44.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27876, sync = True, waitForSettling = True)
17-03-17 19:34:44.918 -07 000000610 INF: Z Motor: Moving to -0.127608 mm, started at -0.134450 mm, distance = 6.84 um
17-03-17 19:34:44.918 -07 000000610 INF: FPGA: Xmit ZDACW 27876\n [Z Motor]
17-03-17 19:34:44.918 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:34:44.928 -07 000000610 INF: FPGA: 'ZDACW 27876' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:34:44.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:34:44.928 -07 000000462 INF: FPGA: Recv ZDACR 27876
17-03-17 19:34:44.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:44.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:34:45.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:45.088 -07 000000431 INF: FPGA: Recv ZSGSRD 29159
17-03-17 19:34:45.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:34:45.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:45.098 -07 000000501 INF: FPGA: Recv ZSGSRD 29154
17-03-17 19:34:45.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:45.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:45.108 -07 000000478 INF: FPGA: Recv ZSGSRD 29153
17-03-17 19:34:45.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:45.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:45.118 -07 000000462 INF: FPGA: Recv ZSGSRD 29154
17-03-17 19:34:45.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:45.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:45.128 -07 000000478 INF: FPGA: Recv ZSGSRD 29155
17-03-17 19:34:45.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:45.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:45.138 -07 000000608 INF: FPGA: Recv ZSGSRD 29158
17-03-17 19:34:45.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:45.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:45.148 -07 000000478 INF: FPGA: Recv ZSGSRD 29157
17-03-17 19:34:45.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:45.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:45.158 -07 000000462 INF: FPGA: Recv ZSGSRD 29145
17-03-17 19:34:45.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:45.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:45.168 -07 000000431 INF: FPGA: Recv ZSGSRD 29154
17-03-17 19:34:45.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:45.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:34:45.178 -07 000000608 INF: FPGA: Recv ZSGSRD 29153
17-03-17 19:34:45.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:45.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:34:45.188 -07 000000478 INF: FPGA: Recv ZPIEZORD 24773
17-03-17 19:34:45.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:45.198 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.254 V. Piezo Error = -9.6 V.
17-03-17 19:34:45.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29154 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29154 (-126.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29145 (-126.8 uncal um), Max = 29159 (-126.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:34:45.198 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29154, posNoise = 5, negNoise = 9
17-03-17 19:34:45.198 -07 000000610 INF: Z Motor: After move to -0.127608, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:34:45.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:34:45.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:34:45.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:34:45.198 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:34:45.198 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:34:45.198 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:34:45.198 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:34:45.198 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:34:45.198 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:34:45.198 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:34:45.198 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:34:45.198 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:34:45.198 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:34:45.198 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:34:45.208 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:34:45.208 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:34:45.208 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:34:45.208 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:34:45.208 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:34:45.218 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:34:45.218 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:34:45.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28053 150\n [Camera]
17-03-17 19:34:45.418 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:34:45.818 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-17 19:34:45.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-17 19:34:45.818 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:45.818 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-17 19:34:45.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-17 19:34:45.828 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:45.828 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:45.828 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2617114384, 0x0, 391868352) start.
17-03-17 19:34:45.828 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:45.828 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:34:46.008 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28053 787
17-03-17 19:34:46.158 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-17 19:34:46.198 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2617114384, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 19:34:46.198 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 19:34:46.198 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:46.198 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:34:46.198 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:34:46.198 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:46.208 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:34:46.208 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:34:46.208 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:34:46.218 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:34:46.358 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-17 19:34:46.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-17 19:34:46.358 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:34:46.458 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-17 19:34:46.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-17 19:34:46.468 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:34:46.468 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:34:46.468 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:34:46.468 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:34:46.468 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:34:46.548 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-17 19:34:46.548 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:34:46.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28053 150' command took 2 ms to send, 1324 ms to get response, and 1330 ms overall
17-03-17 19:34:46.698 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:34:46.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 26. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:34:46.878 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:34:46.878 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:34:46.878 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:46.878 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 19:34:46.878 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:34:46.878 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:34:46.878 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:46.878 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:34:46.878 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-17 19:34:46.878 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:34:46.888 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 19:34:46.918 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 19:34:46.918 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:34:46.968 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 19:34:46.978 -07 000000610 INF: Enabling Skipping AutoFocus in the next 2 cycles.
17-03-17 19:34:46.978 -07 000000610 INF: Imaging Cycle 27: ScanTilesCommand Cycle 27 time end. Duration was 156864 ms.
17-03-17 19:34:46.978 -07 000000610 INF: =================== Cycle #27 ===================
17-03-17 19:34:46.978 -07 000000610 INF: ===================  ===================
17-03-17 19:34:46.978 -07 000000569 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:34:46.978 -07 000000551 INF: FPGA: Recv EXLED1ADCR 22
17-03-17 19:34:46.988 -07 000000569 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:34:46.988 -07 000000569 INF: GreenLED: Using Green data: Photodiode ADC 22 --> 0.0 mW (old method), or 1.6 mW (new method). Difference = 1.6 mW
17-03-17 19:34:46.988 -07 000000569 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 27, FrontChillerTemperature: 4.039839, FrontChillerHeatSinkTemperature: 0.516488, AmbientTemperature: 18.95252, FlowCellCompartmentTemperature: 21.99836, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.78689, GreenLEDSensorTemperature: 26.27255, PhotodiodePowerAdcGreen: 22, PhotodiodePowerMwGreen: 1.562308
17-03-17 19:34:47.008 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.