17-03-17 19:34:47.058 -07 000000610 INF: =================== Cycle #28 ===================
17-03-17 19:34:47.058 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 19:34:47.058 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 19:34:47.058 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:47.058 -07 000000478 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:34:47.068 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:34:47.068 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:47.068 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 19:34:47.068 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 19:34:47.068 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 19:34:47.178 -07 000000475 INF: FPGA: Recv YMVTO 154378 872
17-03-17 19:34:47.178 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 19:34:47.178 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 19:34:47.178 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 19:34:47.178 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 19:34:47.528 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.02213,
17-03-17 19:34:50.178 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:34:50.178 -07 000000501 INF: FPGA: Recv YRDPOS 154381
17-03-17 19:34:50.188 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:50.188 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:34:50.198 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:34:50.198 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 19:34:50.198 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3143 ms
17-03-17 19:34:50.208 -07 000000610 INF: =================== Cycle #28, Flow Cell Temp 60° ===================
17-03-17 19:34:50.208 -07 000000610 INF: =================== Cycle #28, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 19:34:50.208 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 19:34:50.208 -07 000000501 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:34:50.218 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:34:50.218 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:34:50.218 -07 000000512 INF: FPGA: Recv TEC2EN 
17-03-17 19:34:50.228 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:34:50.228 -07 000000610 INF: =================== Cycle #28, Flow Cell Temp 60° ===================
17-03-17 19:34:50.228 -07 000000610 INF: =================== Cycle #28 ===================
17-03-17 19:34:50.228 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:34:50.228 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:34:50.258 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:34:50.258 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 19:34:50.258 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:34:50.558 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:34:50.578 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:34:50.578 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:34:50.628 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:34:50.648 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:34:50.648 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:34:50.748 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3) ===================
17-03-17 19:34:50.748 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:34:50.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:34:50.778 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:34:50.778 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:34:50.778 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:34:50.908 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:34:50.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:34:51.698 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:34:51.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=342, R2=364, Total=706. Warn if over 250 bubbles per interval.
17-03-17 19:34:52.888 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.994908,
17-03-17 19:34:54.078 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:34:54.108 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:34:54.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:34:54.558 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:34:54.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:34:55.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:34:55.008 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:34:55.008 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3) ===================
17-03-17 19:34:55.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:34:55.168 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:34:55.168 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:34:55.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:34:55.328 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:34:55.328 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:34:55.328 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:34:55.458 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:34:55.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:34:55.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:34:55.948 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:34:55.948 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:34:55.948 -07 000000610 INF: =================== Cycle #28 ===================
17-03-17 19:34:56.698 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 5
17-03-17 19:34:56.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=5, R2=7, Total=12. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:34:57.168 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:34:57.168 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 19:34:57.168 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:34:57.188 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:34:57.188 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 19:34:57.188 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 19:34:57.318 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:34:57.338 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 19:34:57.338 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 19:34:57.388 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:34:57.408 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:34:57.408 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:34:57.508 -07 000000610 INF: =================== Cycle #28, Pumping Reagent CMS (4) ===================
17-03-17 19:34:57.508 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:34:57.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:34:57.538 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:34:57.538 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:34:57.538 -07 000000610 INF: =================== Cycle #28, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 19:34:57.668 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:34:57.708 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:34:58.248 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.996267,
17-03-17 19:34:59.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:34:59.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:34:59.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:34:59.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:34:59.628 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:34:59.628 -07 000000610 INF: =================== Cycle #28, Pumping Reagent CMS (4) ===================
17-03-17 19:34:59.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:34:59.788 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:34:59.788 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:34:59.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:34:59.948 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:34:59.948 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:34:59.948 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:35:00.078 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:35:00.108 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:35:00.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:35:00.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:35:00.568 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:35:00.568 -07 000000610 INF: =================== Cycle #28 ===================
17-03-17 19:35:01.698 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:35:01.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:35:01.788 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:35:01.788 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:35:01.788 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:35:01.808 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:35:01.808 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 19:35:01.808 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 19:35:01.958 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:35:01.978 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 19:35:01.978 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 19:35:02.028 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:35:02.048 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:35:02.048 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:35:02.148 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3) ===================
17-03-17 19:35:02.148 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:35:02.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:35:02.178 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:35:02.178 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:35:02.178 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:35:02.308 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:35:02.348 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:35:03.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:35:03.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:35:03.248 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 19:35:03.248 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3) ===================
17-03-17 19:35:03.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:35:03.408 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:35:03.408 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:35:03.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:35:03.568 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:35:03.568 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:35:03.568 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:35:03.608 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.981281,
17-03-17 19:35:03.698 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:35:03.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:35:04.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:35:04.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:35:04.188 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:35:04.188 -07 000000610 INF: =================== Cycle #28 ===================
17-03-17 19:35:04.188 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:35:04.188 -07 000000626 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:35:04.188 -07 000000512 INF: WaitCommand(10000) start
17-03-17 19:35:05.408 -07 000000626 INF: AsyncDelayTimer waited 1213ms
17-03-17 19:35:05.408 -07 000000626 INF: LanePump: Xmit /1?\r
17-03-17 19:35:05.438 -07 000000626 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:35:05.438 -07 000000626 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:35:05.568 -07 000000626 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:35:05.608 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:35:06.698 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:35:06.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:35:07.138 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-17 19:35:07.168 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:35:07.588 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-17 19:35:07.618 -07 000000626 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:35:07.618 -07 000000626 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:35:07.618 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:35:07.618 -07 000000626 INF: ===================  ===================
17-03-17 19:35:08.968 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.978563,
17-03-17 19:35:11.698 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:35:11.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:35:14.198 -07 000000512 INF: WaitCommand(10000) end
17-03-17 19:35:14.198 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3) ===================
17-03-17 19:35:14.198 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 19:35:14.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:35:14.228 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:35:14.228 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:35:14.228 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:35:14.328 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.999021,
17-03-17 19:35:14.358 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 19:35:14.398 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:35:16.698 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:35:16.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:35:19.688 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.014009,
17-03-17 19:35:20.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:35:20.558 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:35:20.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:35:21.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:35:21.428 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:35:21.458 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:35:21.698 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:35:21.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:35:21.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:35:21.908 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:35:22.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:35:22.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:35:22.358 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 19:35:22.358 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3) ===================
17-03-17 19:35:22.488 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:35:22.518 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:35:22.518 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:35:22.648 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:35:22.678 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:35:22.678 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:35:22.678 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:35:22.808 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:35:22.838 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:35:23.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:35:23.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:35:23.298 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:35:23.298 -07 000000610 INF: =================== Cycle #28 ===================
17-03-17 19:35:24.518 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 19:35:24.518 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 19:35:24.518 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:35:24.538 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:35:24.538 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 19:35:24.538 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 19:35:24.748 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:35:24.768 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 19:35:24.768 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 19:35:24.818 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:35:25.748 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.041198,
17-03-17 19:35:25.768 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:35:25.768 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:35:25.868 -07 000000610 INF: =================== Cycle #28, Pumping Reagent IMT (1) ===================
17-03-17 19:35:25.868 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:35:25.868 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:35:25.898 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:35:25.898 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:35:25.898 -07 000000610 INF: =================== Cycle #28, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 19:35:26.028 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:35:26.068 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:35:26.698 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:35:26.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:35:27.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:35:27.538 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:35:27.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:35:27.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:35:27.988 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:35:27.988 -07 000000610 INF: =================== Cycle #28, Pumping Reagent IMT (1) ===================
17-03-17 19:35:28.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:35:28.148 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:35:28.148 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:35:28.278 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:35:28.308 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:35:28.308 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:35:28.308 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:35:28.438 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:35:28.468 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:35:28.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:35:28.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:35:28.928 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:35:28.928 -07 000000610 INF: =================== Cycle #28 ===================
17-03-17 19:35:30.148 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 19:35:30.148 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:35:30.148 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:35:30.168 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:35:30.168 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 19:35:30.168 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:35:30.398 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:35:30.418 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 19:35:30.418 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 19:35:30.468 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:35:30.488 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:35:30.488 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:35:30.588 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3) ===================
17-03-17 19:35:30.588 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:35:30.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:35:30.618 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:35:30.618 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:35:30.618 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:35:30.748 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:35:30.788 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:35:31.108 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.041198,
17-03-17 19:35:31.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:35:31.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:35:31.688 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 19:35:31.688 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3) ===================
17-03-17 19:35:31.698 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:35:31.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:35:31.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:35:31.848 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:35:31.848 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:35:31.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:35:32.008 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:35:32.008 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:35:32.008 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:35:32.138 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:35:32.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:35:32.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:35:32.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:35:32.628 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:35:32.628 -07 000000610 INF: =================== Cycle #28 ===================
17-03-17 19:35:32.628 -07 000000610 INF: =================== Cycle #28, Flow Cell Temp 65° ===================
17-03-17 19:35:32.628 -07 000000610 INF: =================== Cycle #28, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 19:35:32.628 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 19:35:32.628 -07 000000475 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:35:32.638 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:35:32.638 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:35:32.638 -07 000000608 INF: FPGA: Recv TEC2EN 
17-03-17 19:35:32.648 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:35:32.648 -07 000000610 INF: =================== Cycle #28, Flow Cell Temp 65° ===================
17-03-17 19:35:32.648 -07 000000610 INF: =================== Cycle #28 ===================
17-03-17 19:35:32.648 -07 000000610 INF: WaitCommand(30000) start
17-03-17 19:35:36.478 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.018051,
17-03-17 19:35:36.698 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:35:36.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:35:41.698 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:35:41.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:35:41.848 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.005817,
17-03-17 19:35:46.698 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:35:46.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:35:47.218 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.981281,
17-03-17 19:35:51.698 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:35:51.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:35:53.248 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.971733,
17-03-17 19:35:56.698 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:35:56.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:35:58.608 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.98264,
17-03-17 19:36:01.698 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:36:01.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:36:02.658 -07 000000610 INF: WaitCommand(30000) end
17-03-17 19:36:02.658 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3) ===================
17-03-17 19:36:02.658 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 19:36:02.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:36:02.788 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:36:02.788 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:36:02.788 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:36:02.918 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 19:36:02.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:36:03.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:36:03.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:36:03.528 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 19:36:03.528 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3) ===================
17-03-17 19:36:03.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:36:03.688 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:36:03.688 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:36:03.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:36:03.848 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:36:03.848 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:36:03.848 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:36:03.978 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:36:04.518 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.02213,
17-03-17 19:36:04.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:36:04.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:36:04.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:36:04.988 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:36:04.988 -07 000000610 INF: =================== Cycle #28 ===================
17-03-17 19:36:04.988 -07 000000475 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:36:04.988 -07 000000608 INF: WaitCommand(30000) start
17-03-17 19:36:04.988 -07 000000475 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:36:05.688 -07 000000475 INF: AsyncDelayTimer waited 694ms
17-03-17 19:36:05.688 -07 000000475 INF: LanePump: Xmit /1?\r
17-03-17 19:36:05.718 -07 000000475 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:36:05.718 -07 000000475 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:36:05.848 -07 000000475 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:36:05.888 -07 000000475 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:36:06.698 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:36:06.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:36:08.228 -07 000000475 INF: LanePump: Xmit /1Q\r
17-03-17 19:36:08.258 -07 000000475 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:36:08.678 -07 000000475 INF: LanePump: Xmit /1Q\r
17-03-17 19:36:08.708 -07 000000475 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:36:08.708 -07 000000475 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 19:36:08.708 -07 000000475 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:36:08.708 -07 000000475 INF: ===================  ===================
17-03-17 19:36:09.878 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.020806,
17-03-17 19:36:11.698 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:36:11.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:36:15.248 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.03576,
17-03-17 19:36:16.698 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:36:16.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:36:20.628 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.033041,
17-03-17 19:36:21.698 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:36:21.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:36:25.998 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.016692,
17-03-17 19:36:26.698 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:36:26.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:36:31.358 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.011254,
17-03-17 19:36:31.698 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:36:31.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:36:34.998 -07 000000608 INF: WaitCommand(30000) end
17-03-17 19:36:34.998 -07 000000610 INF: =================== Cycle #28, Flow Cell Temp 22° ===================
17-03-17 19:36:34.998 -07 000000610 INF: =================== Cycle #28, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 19:36:34.998 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 19:36:34.998 -07 000000429 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:36:35.008 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:36:35.008 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:36:35.008 -07 000000547 INF: FPGA: Recv TEC2EN 
17-03-17 19:36:35.018 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:36:35.018 -07 000000610 INF: =================== Cycle #28, Flow Cell Temp 22° ===================
17-03-17 19:36:35.018 -07 000000610 INF: =================== Cycle #28 ===================
17-03-17 19:36:35.018 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3) ===================
17-03-17 19:36:35.018 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:36:35.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:36:35.058 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:36:35.058 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:36:35.058 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:36:35.188 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:36:35.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:36:36.698 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:36:36.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:36:36.728 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.016692,
17-03-17 19:36:38.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:36:38.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:36:38.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:36:38.838 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:36:39.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:36:39.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:36:39.288 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:36:39.288 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3) ===================
17-03-17 19:36:39.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:36:39.448 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:36:39.448 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:36:39.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:36:39.608 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:36:39.608 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:36:39.608 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:36:39.738 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:36:39.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:36:40.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:36:40.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:36:40.228 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:36:40.228 -07 000000610 INF: =================== Cycle #28 ===================
17-03-17 19:36:41.448 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:36:41.448 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 19:36:41.448 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:36:41.468 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:36:41.468 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 19:36:41.468 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 19:36:41.618 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:36:41.638 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:36:41.638 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:36:41.688 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:36:41.698 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:36:41.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:36:41.708 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:36:41.708 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:36:41.808 -07 000000610 INF: =================== Cycle #28, Pumping Reagent USM (2) ===================
17-03-17 19:36:41.808 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:36:41.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:36:41.838 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:36:41.838 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:36:41.838 -07 000000610 INF: =================== Cycle #28, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 19:36:41.968 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:36:42.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:36:42.098 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.988112,
17-03-17 19:36:43.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:36:43.478 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:36:43.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:36:43.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:36:43.928 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:36:43.928 -07 000000610 INF: =================== Cycle #28, Pumping Reagent USM (2) ===================
17-03-17 19:36:44.058 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:36:44.088 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:36:44.088 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:36:44.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:36:44.248 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:36:44.248 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:36:44.248 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:36:44.378 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:36:44.408 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:36:44.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:36:44.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:36:44.868 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:36:44.868 -07 000000610 INF: =================== Cycle #28 ===================
17-03-17 19:36:46.088 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:36:46.088 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:36:46.088 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:36:46.108 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:36:46.108 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 19:36:46.108 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:36:46.258 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:36:46.278 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:36:46.278 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:36:46.328 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:36:46.348 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:36:46.348 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:36:46.448 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3) ===================
17-03-17 19:36:46.448 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:36:46.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:36:46.478 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:36:46.478 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:36:46.478 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:36:46.608 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:36:46.648 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:36:46.698 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:36:46.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=347, R2=371, Total=718. Warn if over 250 bubbles per interval.
17-03-17 19:36:47.468 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.975845,
17-03-17 19:36:47.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:36:47.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:36:47.548 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:36:47.548 -07 000000610 INF: =================== Cycle #28, Pumping Reagent PR2 (3) ===================
17-03-17 19:36:47.678 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:36:47.708 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:36:47.708 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:36:47.838 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:36:47.868 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:36:47.868 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:36:47.868 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:36:47.998 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:36:48.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:36:48.458 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:36:48.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:36:48.488 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:36:48.488 -07 000000610 INF: =================== Cycle #28 ===================
17-03-17 19:36:48.488 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:36:48.488 -07 000000608 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:36:49.248 -07 000000478 INF: WaitCommand(10000) start
17-03-17 19:36:49.708 -07 000000608 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:36:49.708 -07 000000608 INF: LanePump: Xmit /1?\r
17-03-17 19:36:50.258 -07 000000608 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:36:50.258 -07 000000608 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:36:50.388 -07 000000608 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:36:50.428 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:36:51.708 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 3
17-03-17 19:36:51.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=3, R2=1, Total=4. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=372, Total=722. Warn if over 250 bubbles per interval.
17-03-17 19:36:51.958 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-17 19:36:51.988 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:36:52.408 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-17 19:36:52.438 -07 000000608 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:36:52.438 -07 000000608 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:36:52.438 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:36:52.438 -07 000000608 INF: ===================  ===================
17-03-17 19:36:52.848 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.985358,
17-03-17 19:36:56.708 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:36:56.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=372, Total=722. Warn if over 250 bubbles per interval.
17-03-17 19:36:58.208 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.001704,
17-03-17 19:36:59.258 -07 000000478 INF: WaitCommand(10000) end
17-03-17 19:36:59.258 -07 000000610 INF: =================== Cycle #28, Imaging ===================
17-03-17 19:36:59.258 -07 000000610 INF: Imaging Cycle 28: ScanTilesCommand Cycle 28 time start.
17-03-17 19:36:59.258 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 19:36:59.258 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:36:59.288 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:36:59.288 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 19:36:59.288 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 19:36:59.588 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:36:59.608 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:36:59.608 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:36:59.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:36:59.678 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:36:59.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:36:59.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:36:59.678 -07 000000475 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 19:36:59.678 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:36:59.678 -07 000000475 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 19:36:59.678 -07 000000478 INF: FPGA: Recv EXLED1ON 
17-03-17 19:36:59.688 -07 000000475 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:36:59.688 -07 000000475 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 19:36:59.688 -07 000000551 INF: FPGA: Recv EXLED1ADCR 23156
17-03-17 19:36:59.698 -07 000000475 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:36:59.698 -07 000000475 INF: RedLED: Using Red data: Photodiode ADC 23156 --> 7.4 mW (old method), or 205.2 mW (new method). Difference = 197.8 mW
17-03-17 19:36:59.698 -07 000000475 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 19:36:59.698 -07 000000551 INF: FPGA: Recv EXLED1OFF 
17-03-17 19:36:59.708 -07 000000475 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:36:59.708 -07 000000475 INF: RedLED: LED was on for 20 ms
17-03-17 19:36:59.708 -07 000000475 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 19:36:59.708 -07 000000475 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 19:36:59.708 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:36:59.708 -07 000000475 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 19:36:59.708 -07 000000551 INF: FPGA: Recv EXLED2ON 
17-03-17 19:36:59.718 -07 000000475 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:36:59.718 -07 000000475 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:36:59.718 -07 000000478 INF: FPGA: Recv EXLED1ADCR 2099
17-03-17 19:36:59.728 -07 000000475 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:36:59.728 -07 000000475 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-17 19:36:59.728 -07 000000475 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 19:36:59.728 -07 000000478 INF: FPGA: Recv EXLED2OFF 
17-03-17 19:36:59.738 -07 000000475 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:36:59.738 -07 000000475 INF: GreenLED: LED was on for 20 ms
17-03-17 19:36:59.738 -07 000000475 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 19:36:59.738 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:36:59.738 -07 000000478 INF: FPGA: Recv EMCUR 
17-03-17 19:36:59.748 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:36:59.748 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 19:37:00.248 -07 000000478 INF: FPGA: Recv EMOUT
17-03-17 19:37:00.248 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 19:37:00.248 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 19:37:00.248 -07 000000478 INF: FPGA: Recv EMCUR 
17-03-17 19:37:00.258 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:37:00.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:37:00.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38134765625, Z-Position -0.127614832792034. ------
17-03-17 19:37:00.258 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:00.258 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17949 mm
17-03-17 19:37:00.258 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:37:01.108 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:37:01.108 -07 000000486 INF: Y Motor: Moving to 59.9126 mm, started at 75.3813 mm, delta = -15.4687 mm
17-03-17 19:37:01.108 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:01.638 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:01.638 -07 000000512 INF: FPGA: Recv YRDPOS 154381
17-03-17 19:37:01.638 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1370 ms to get response, and 1374 ms overall
17-03-17 19:37:01.638 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 520 ms to get response, and 526 ms overall
17-03-17 19:37:01.638 -07 000000486 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:01.638 -07 000000486 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 19:37:01.638 -07 000000486 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:37:01.638 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:37:01.638 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 39209, sync = True, waitForSettling = False)
17-03-17 19:37:01.638 -07 000000512 INF: Z Motor: Moving to -0.179487 mm, started at -0.127615 mm, distance = -51.87 um
17-03-17 19:37:01.648 -07 000000486 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:37:01.658 -07 000000512 INF: FPGA: Xmit ZDACW 39209\n [Z Motor]
17-03-17 19:37:02.168 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 19:37:02.168 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 19:37:02.168 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:37:02.168 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 521 ms to get response, and 530 ms overall
17-03-17 19:37:02.168 -07 000000512 INF: FPGA: 'ZDACW 39209' command took 0 ms to send, 500 ms to get response, and 528 ms overall
17-03-17 19:37:02.168 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:37:02.168 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:02.168 -07 000000478 INF: FPGA: Recv ZDACR 39209
17-03-17 19:37:02.178 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:37:02.178 -07 000000512 INF: Z Motor: MoveAbsStepped took 538 ms (did NOT wait for settling yet))
17-03-17 19:37:03.328 -07 000000547 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 19:37:03.328 -07 000000486 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1694 ms overall
17-03-17 19:37:03.328 -07 000000486 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:37:03.328 -07 000000486 INF: Y Motor: To move from 75.381 to 59.913 (-15.469 mm) should take 24750 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 19:37:03.328 -07 000000486 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1694 ms, distance = 15.469 mm, average velocity = 9.131 mm/sec
17-03-17 19:37:04.298 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.999021,
17-03-17 19:37:06.178 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:06.178 -07 000000512 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:37:06.188 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:06.188 -07 000000486 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:06.208 -07 000000486 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:37:06.208 -07 000000486 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 19:37:06.208 -07 000000486 INF: Y Motor: Moved to 59.9116 after 5097 ms
17-03-17 19:37:06.208 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179487 mm (DAC = 39209)
17-03-17 19:37:06.208 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:06.208 -07 000000608 INF: FPGA: Recv ZSGSRD 37231
17-03-17 19:37:06.218 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:37:06.218 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:06.218 -07 000000512 INF: FPGA: Recv ZSGSRD 37228
17-03-17 19:37:06.228 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:06.228 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:06.228 -07 000000608 INF: FPGA: Recv ZSGSRD 37229
17-03-17 19:37:06.238 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:06.238 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:06.238 -07 000000512 INF: FPGA: Recv ZSGSRD 37227
17-03-17 19:37:06.248 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:06.248 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:06.248 -07 000000547 INF: FPGA: Recv ZSGSRD 37228
17-03-17 19:37:06.258 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:06.258 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:06.258 -07 000000512 INF: FPGA: Recv ZSGSRD 37227
17-03-17 19:37:06.268 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:06.268 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:06.268 -07 000000608 INF: FPGA: Recv ZSGSRD 37228
17-03-17 19:37:06.278 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:06.278 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:06.278 -07 000000551 INF: FPGA: Recv ZSGSRD 37228
17-03-17 19:37:06.288 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:06.288 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:06.288 -07 000000547 INF: FPGA: Recv ZSGSRD 37231
17-03-17 19:37:06.298 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:06.298 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:06.298 -07 000000512 INF: FPGA: Recv ZSGSRD 37223
17-03-17 19:37:06.308 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:06.308 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:06.308 -07 000000608 INF: FPGA: Recv ZPIEZORD 33616
17-03-17 19:37:06.318 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:06.318 -07 000000475 INF: Z Motor: Piezo is near 51.8 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.983 V. Piezo Error = -8.0 V.
17-03-17 19:37:06.318 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37228 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37228 (-178.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37223 (-178.6 uncal um), Max = 37231 (-178.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:37:06.318 -07 000000475 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37228, posNoise = 3, negNoise = 5
17-03-17 19:37:06.318 -07 000000475 INF: Z Motor: After move to -0.179487, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:06.318 -07 000000475 INF: Z Motor: Settle wait time = 4572 ms, measure time = 106 ms (allowed 150 ms), total time = 4678 ms
17-03-17 19:37:06.318 -07 000000475 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:37:06.368 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 6103 ms
17-03-17 19:37:06.368 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:37:06.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:06.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:06.368 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:06.368 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:06.368 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:37:06.368 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:06.368 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 19:37:06.368 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:37:06.398 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 19:37:06.398 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:37:06.398 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:37:06.398 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:37:06.408 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:37:06.408 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-17 19:37:06.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:37:06.458 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:37:06.658 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:37:06.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:37:06.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:37:06.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:37:06.698 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:37:06.698 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 19:37:06.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:37:06.708 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:37:06.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:37:06.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:06.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:37:06.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:37:06.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:37:06.898 -07 000000512 INF: Image SNR check: start
17-03-17 19:37:06.898 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:06.898 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:06.908 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:37:06.908 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:37:06.908 -07 000000512 INF: Image SNR check: pass  [peak (Max-Min)=66.99]
17-03-17 19:37:06.908 -07 000000512 INF: Autofocus start
17-03-17 19:37:06.908 -07 000000512 INF: MeasureProfile start
17-03-17 19:37:06.918 -07 000000512 INF: MeasureProfile done
17-03-17 19:37:06.918 -07 000000512 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 19:37:06.918 -07 000000512 INF: Autofocus finished
17-03-17 19:37:07.108 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:37:07.108 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 19:37:07.108 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.179483921624612. ----------
17-03-17 19:37:07.118 -07 000000610 INF: Cycle	28	Tile	1	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:37:07.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37689, sync = True, waitForSettling = True)
17-03-17 19:37:07.118 -07 000000610 INF: Z Motor: Moving to -0.172529 mm, started at -0.179484 mm, distance = 6.95 um
17-03-17 19:37:07.118 -07 000000610 INF: FPGA: Xmit ZDACW 37689\n [Z Motor]
17-03-17 19:37:07.118 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 19:37:07.128 -07 000000610 INF: FPGA: 'ZDACW 37689' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:37:07.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:07.128 -07 000000608 INF: FPGA: Recv ZDACR 37689
17-03-17 19:37:07.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:07.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:37:07.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:07.288 -07 000000512 INF: FPGA: Recv ZSGSRD 36150
17-03-17 19:37:07.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:07.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:07.298 -07 000000512 INF: FPGA: Recv ZSGSRD 36149
17-03-17 19:37:07.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:07.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:07.308 -07 000000608 INF: FPGA: Recv ZSGSRD 36146
17-03-17 19:37:07.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:07.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:07.318 -07 000000608 INF: FPGA: Recv ZSGSRD 36146
17-03-17 19:37:07.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:07.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:07.328 -07 000000608 INF: FPGA: Recv ZSGSRD 36148
17-03-17 19:37:07.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:07.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:07.338 -07 000000512 INF: FPGA: Recv ZSGSRD 36147
17-03-17 19:37:07.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:07.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:07.348 -07 000000541 INF: FPGA: Recv ZSGSRD 36142
17-03-17 19:37:07.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:07.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:07.358 -07 000000512 INF: FPGA: Recv ZSGSRD 36147
17-03-17 19:37:07.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:07.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:07.368 -07 000000541 INF: FPGA: Recv ZSGSRD 36155
17-03-17 19:37:07.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:07.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:07.378 -07 000000541 INF: FPGA: Recv ZSGSRD 36146
17-03-17 19:37:07.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:07.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:07.388 -07 000000541 INF: FPGA: Recv ZPIEZORD 32224
17-03-17 19:37:07.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:07.398 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.751 V. Piezo Error = -8.7 V.
17-03-17 19:37:07.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36148 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36147 (-171.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36142 (-171.6 uncal um), Max = 36155 (-171.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:37:07.398 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36148, posNoise = 7, negNoise = 6
17-03-17 19:37:07.398 -07 000000610 INF: Z Motor: After move to -0.172529, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:07.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:37:07.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:07.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:07.398 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:07.398 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:07.398 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:37:07.398 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:07.398 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:07.398 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:37:07.398 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:37:07.398 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:37:07.408 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:37:07.408 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:37:07.408 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:37:07.408 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:37:07.418 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:37:07.418 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:37:07.428 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 19:37:07.428 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:37:07.428 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:37:07.428 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:37:07.438 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 19:37:07.438 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-17 19:37:07.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 37865 150\n [Camera]
17-03-17 19:37:07.648 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:37:08.048 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:37:08.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:37:08.048 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:08.048 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:37:08.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:37:08.048 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:08.178 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:08.178 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:37:08.178 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:08.178 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:37:08.238 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37865 788
17-03-17 19:37:08.388 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:37:08.578 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:37:08.578 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:37:08.578 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:08.578 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:37:08.578 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:37:08.578 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:08.578 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:37:08.578 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:37:08.578 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 532 ms.
17-03-17 19:37:08.588 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:37:08.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:37:08.588 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:08.588 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 536 ms.
17-03-17 19:37:08.588 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:37:08.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:37:08.588 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:08.598 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:08.598 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:37:08.598 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:08.598 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:37:08.778 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1324
17-03-17 19:37:08.778 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:37:08.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 37865 150' command took 2 ms to send, 1323 ms to get response, and 1331 ms overall
17-03-17 19:37:08.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:37:08.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.17254577251151. ------
17-03-17 19:37:08.778 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17891 mm
17-03-17 19:37:08.778 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:37:08.778 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:08.788 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:08.788 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:37:08.788 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:37:08.788 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:37:08.788 -07 000000551 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 19:37:08.788 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 39083, sync = True, waitForSettling = False)
17-03-17 19:37:08.788 -07 000000478 INF: Z Motor: Moving to -0.178911 mm, started at -0.172546 mm, distance = -6.36 um
17-03-17 19:37:08.798 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:08.798 -07 000000501 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:37:08.808 -07 000000478 INF: FPGA: Xmit ZDACW 39083\n [Z Motor]
17-03-17 19:37:08.808 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:37:08.808 -07 000000551 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:08.808 -07 000000551 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:37:08.808 -07 000000551 INF: Y Motor: Moving 1330 steps2
17-03-17 19:37:08.808 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:37:08.818 -07 000000478 INF: FPGA: 'ZDACW 39083' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:37:08.818 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:08.818 -07 000000501 INF: FPGA: Recv ZDACR 39083
17-03-17 19:37:08.828 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:37:08.828 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:08.828 -07 000000478 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 19:37:08.978 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:37:08.978 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:37:08.978 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:08.988 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:08.988 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:37:08.988 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:37:08.988 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:08.988 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:08.988 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:37:08.988 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:37:08.988 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 205 ms overall
17-03-17 19:37:08.988 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:37:09.198 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 19:37:09.198 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:37:09.228 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:09.228 -07 000000475 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:37:09.238 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:37:09.238 -07 000000551 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:09.238 -07 000000551 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:37:09.238 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.093 mm/sec
17-03-17 19:37:09.658 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.986717,
17-03-17 19:37:10.188 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:10.188 -07 000000512 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:37:10.198 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:10.198 -07 000000551 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:10.218 -07 000000551 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:37:10.218 -07 000000551 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:37:10.218 -07 000000551 INF: Y Motor: Moved to 60.7339 after 1428 ms (table move)
17-03-17 19:37:10.218 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178911 mm (DAC = 39083)
17-03-17 19:37:10.218 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:10.218 -07 000000512 INF: FPGA: Recv ZSGSRD 37142
17-03-17 19:37:10.228 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:37:10.228 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:10.228 -07 000000551 INF: FPGA: Recv ZSGSRD 37134
17-03-17 19:37:10.238 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:10.238 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:10.238 -07 000000512 INF: FPGA: Recv ZSGSRD 37136
17-03-17 19:37:10.248 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:10.248 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:10.248 -07 000000475 INF: FPGA: Recv ZSGSRD 37142
17-03-17 19:37:10.258 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:10.258 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:10.258 -07 000000475 INF: FPGA: Recv ZSGSRD 37138
17-03-17 19:37:10.268 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:10.268 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:10.268 -07 000000475 INF: FPGA: Recv ZSGSRD 37146
17-03-17 19:37:10.278 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:10.278 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:10.278 -07 000000475 INF: FPGA: Recv ZSGSRD 37145
17-03-17 19:37:10.288 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:10.288 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:10.288 -07 000000475 INF: FPGA: Recv ZSGSRD 37138
17-03-17 19:37:10.298 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:10.298 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:10.298 -07 000000475 INF: FPGA: Recv ZSGSRD 37136
17-03-17 19:37:10.308 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:10.308 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:10.308 -07 000000475 INF: FPGA: Recv ZSGSRD 37137
17-03-17 19:37:10.318 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:10.318 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:10.318 -07 000000475 INF: FPGA: Recv ZPIEZORD 33570
17-03-17 19:37:10.328 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:10.328 -07 000000541 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.964 V. Piezo Error = -7.9 V.
17-03-17 19:37:10.328 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.9 um, Read 10 ADC samples: Avg = 37139 (-178.0 uncal um), Error = 0.9 uncal um, Median = 37138 (-178.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37134 (-178.0 uncal um), Max = 37146 (-178.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:37:10.328 -07 000000541 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37139, posNoise = 7, negNoise = 5
17-03-17 19:37:10.328 -07 000000541 INF: Z Motor: After move to -0.178911, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:10.328 -07 000000541 INF: Z Motor: Settle wait time = 1432 ms, measure time = 105 ms (allowed 150 ms), total time = 1537 ms
17-03-17 19:37:10.328 -07 000000541 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:37:10.378 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 19:37:10.378 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:37:10.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:10.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:10.378 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:10.378 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:10.378 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:37:10.378 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:10.388 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:10.388 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:37:10.388 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:37:10.388 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:37:10.398 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:37:10.398 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:37:10.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:37:10.448 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:37:10.648 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:37:10.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:37:10.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:37:10.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:37:10.688 -07 000000475 INF: FPGA: Recv @CAMSNAP 282
17-03-17 19:37:10.688 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 19:37:10.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 289 ms overall
17-03-17 19:37:10.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:37:10.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:10.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:37:10.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:37:10.888 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:11.748 -07 000000547 INF: Autofocus start
17-03-17 19:37:11.748 -07 000000547 INF: MeasureProfile start
17-03-17 19:37:11.758 -07 000000547 INF: MeasureProfile done
17-03-17 19:37:11.758 -07 000000547 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:37:11.758 -07 000000547 INF: Autofocus finished
17-03-17 19:37:11.758 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:11.758 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:37:11.758 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 865 ms to get response, and 870 ms overall
17-03-17 19:37:11.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:37:11.758 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:37:11.958 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:37:11.958 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 203 ms overall
17-03-17 19:37:11.968 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.178912166743995. ----------
17-03-17 19:37:11.968 -07 000000610 INF: Cycle	28	Tile	2	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:37:11.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37616, sync = True, waitForSettling = True)
17-03-17 19:37:11.968 -07 000000610 INF: Z Motor: Moving to -0.172195 mm, started at -0.178912 mm, distance = 6.72 um
17-03-17 19:37:11.968 -07 000000610 INF: FPGA: Xmit ZDACW 37616\n [Z Motor]
17-03-17 19:37:11.978 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 19:37:11.978 -07 000000610 INF: FPGA: 'ZDACW 37616' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:37:11.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:11.978 -07 000000475 INF: FPGA: Recv ZDACR 37616
17-03-17 19:37:11.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:11.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:37:12.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:12.138 -07 000000475 INF: FPGA: Recv ZSGSRD 36097
17-03-17 19:37:12.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:12.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:12.148 -07 000000547 INF: FPGA: Recv ZSGSRD 36093
17-03-17 19:37:12.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:12.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:12.158 -07 000000475 INF: FPGA: Recv ZSGSRD 36093
17-03-17 19:37:12.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:12.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:12.168 -07 000000551 INF: FPGA: Recv ZSGSRD 36094
17-03-17 19:37:12.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:12.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:12.178 -07 000000501 INF: FPGA: Recv ZSGSRD 36096
17-03-17 19:37:12.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:12.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:12.188 -07 000000551 INF: FPGA: Recv ZSGSRD 36097
17-03-17 19:37:12.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:12.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:12.198 -07 000000501 INF: FPGA: Recv ZSGSRD 36089
17-03-17 19:37:12.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:12.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:12.208 -07 000000501 INF: FPGA: Recv ZSGSRD 36093
17-03-17 19:37:12.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:12.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:12.218 -07 000000551 INF: FPGA: Recv ZSGSRD 36101
17-03-17 19:37:12.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:12.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:12.228 -07 000000475 INF: FPGA: Recv ZSGSRD 36092
17-03-17 19:37:12.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:12.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:12.238 -07 000000608 INF: FPGA: Recv ZPIEZORD 32149
17-03-17 19:37:12.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:12.248 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.740 V. Piezo Error = -8.7 V.
17-03-17 19:37:12.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36094 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36094 (-171.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36089 (-171.3 uncal um), Max = 36101 (-171.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:37:12.248 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36094, posNoise = 7, negNoise = 5
17-03-17 19:37:12.248 -07 000000610 INF: Z Motor: After move to -0.172195, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:12.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:37:12.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:12.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:12.248 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:12.248 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:12.248 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:37:12.248 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:12.248 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:37:12.248 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:37:12.248 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:12.248 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:37:12.248 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:37:12.248 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:37:12.258 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:37:12.258 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:37:12.258 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:37:12.258 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:37:12.268 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:37:12.268 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:37:12.268 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:37:12.268 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:37:12.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 37793 150\n [Camera]
17-03-17 19:37:12.478 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:37:12.878 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:37:12.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:37:12.878 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:12.878 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:12.878 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2617114384, 0x0, 391868352) start.
17-03-17 19:37:12.878 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:37:12.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:37:12.878 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:12.878 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:12.878 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:37:13.068 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37793 788
17-03-17 19:37:13.218 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:37:13.278 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2617114384, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:37:13.278 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:37:13.278 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:13.278 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:37:13.278 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:37:13.278 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:13.288 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:37:13.288 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:37:13.288 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:37:13.288 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:37:13.418 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:37:13.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:37:13.418 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:13.418 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:37:13.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:37:13.418 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:13.418 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:13.418 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:37:13.418 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:13.418 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:37:13.608 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1324
17-03-17 19:37:13.608 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:37:13.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 37793 150' command took 2 ms to send, 1324 ms to get response, and 1334 ms overall
17-03-17 19:37:13.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:37:13.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.172198865055855. ------
17-03-17 19:37:13.618 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:13.618 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17885 mm
17-03-17 19:37:13.618 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:37:13.618 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:13.618 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 39069, sync = True, waitForSettling = False)
17-03-17 19:37:13.618 -07 000000486 INF: Z Motor: Moving to -0.178846 mm, started at -0.172199 mm, distance = -6.65 um
17-03-17 19:37:13.618 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:37:13.618 -07 000000512 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 19:37:13.628 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:13.628 -07 000000486 INF: FPGA: Xmit ZDACW 39069\n [Z Motor]
17-03-17 19:37:13.628 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:37:13.638 -07 000000486 INF: FPGA: 'ZDACW 39069' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:37:13.638 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:13.638 -07 000000475 INF: FPGA: Recv ZDACR 39069
17-03-17 19:37:13.648 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:13.648 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:13.648 -07 000000486 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 19:37:13.648 -07 000000475 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:37:13.658 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:37:13.658 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 19:37:13.658 -07 000000512 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:13.658 -07 000000512 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:37:13.658 -07 000000512 INF: Y Motor: Moving 1342 steps-19
17-03-17 19:37:13.668 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:37:13.798 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:37:13.798 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:37:13.808 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:13.808 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:13.808 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:37:13.808 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:37:13.808 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:13.818 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:13.818 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:37:13.818 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:37:13.858 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:37:13.858 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 19:37:14.038 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:37:14.038 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:37:14.078 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:14.078 -07 000000486 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:37:14.088 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:37:14.088 -07 000000512 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:14.088 -07 000000512 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:37:14.088 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-17 19:37:15.038 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:15.248 -07 000000486 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:37:15.248 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 202 ms to get response, and 212 ms overall
17-03-17 19:37:15.248 -07 000000512 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:15.268 -07 000000512 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:37:15.268 -07 000000512 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:37:15.268 -07 000000512 INF: Y Motor: Moved to 61.5645 after 1648 ms (table move)
17-03-17 19:37:15.268 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178846 mm (DAC = 39069)
17-03-17 19:37:15.268 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:15.278 -07 000000475 INF: FPGA: Recv ZSGSRD 37134
17-03-17 19:37:15.278 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:37:15.278 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:15.278 -07 000000512 INF: FPGA: Recv ZSGSRD 37133
17-03-17 19:37:15.288 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:37:15.288 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:15.288 -07 000000501 INF: FPGA: Recv ZSGSRD 37128
17-03-17 19:37:15.298 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:15.298 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:15.298 -07 000000512 INF: FPGA: Recv ZSGSRD 37123
17-03-17 19:37:15.308 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:15.308 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:15.308 -07 000000541 INF: FPGA: Recv ZSGSRD 37129
17-03-17 19:37:15.318 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:15.318 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:15.318 -07 000000608 INF: FPGA: Recv ZSGSRD 37124
17-03-17 19:37:15.328 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:15.328 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:15.328 -07 000000541 INF: FPGA: Recv ZSGSRD 37133
17-03-17 19:37:15.338 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:15.338 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:15.338 -07 000000475 INF: FPGA: Recv ZSGSRD 37135
17-03-17 19:37:15.348 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:15.348 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:15.348 -07 000000541 INF: FPGA: Recv ZSGSRD 37130
17-03-17 19:37:15.358 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:15.358 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:15.358 -07 000000475 INF: FPGA: Recv ZSGSRD 37135
17-03-17 19:37:15.368 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:15.368 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:15.368 -07 000000541 INF: FPGA: Recv ZPIEZORD 33584
17-03-17 19:37:15.378 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:15.378 -07 000000478 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.962 V. Piezo Error = -7.9 V.
17-03-17 19:37:15.378 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37130 (-178.0 uncal um), Error = 0.9 uncal um, Median = 37132 (-178.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37123 (-177.9 uncal um), Max = 37135 (-178.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:37:15.378 -07 000000478 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37130, posNoise = 5, negNoise = 7
17-03-17 19:37:15.378 -07 000000478 INF: Z Motor: After move to -0.178846, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:15.378 -07 000000478 INF: Z Motor: Settle wait time = 1651 ms, measure time = 102 ms (allowed 150 ms), total time = 1753 ms
17-03-17 19:37:15.378 -07 000000478 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 19:37:15.428 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1809 ms
17-03-17 19:37:15.428 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:37:15.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:15.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:15.428 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:37:15.428 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:15.428 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:15.428 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:15.428 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:15.428 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:37:15.438 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:37:15.438 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:37:15.438 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:37:15.438 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:37:15.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:37:15.498 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 19:37:15.558 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.994908,
17-03-17 19:37:15.698 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 19:37:15.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 19:37:15.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:37:15.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 19:37:15.728 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:37:15.728 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 19:37:15.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 19:37:15.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:37:15.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:15.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:37:15.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:37:15.828 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:15.828 -07 000000478 INF: Autofocus start
17-03-17 19:37:15.828 -07 000000478 INF: MeasureProfile start
17-03-17 19:37:15.828 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:15.838 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:37:15.838 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:37:15.838 -07 000000478 INF: MeasureProfile done
17-03-17 19:37:15.838 -07 000000478 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:37:15.838 -07 000000478 INF: Autofocus finished
17-03-17 19:37:16.038 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:37:16.038 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:37:16.038 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.178854348834719. ----------
17-03-17 19:37:16.038 -07 000000610 INF: Cycle	28	Tile	3	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:37:16.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37566, sync = True, waitForSettling = True)
17-03-17 19:37:16.048 -07 000000610 INF: Z Motor: Moving to -0.171966 mm, started at -0.178854 mm, distance = 6.89 um
17-03-17 19:37:16.048 -07 000000610 INF: FPGA: Xmit ZDACW 37566\n [Z Motor]
17-03-17 19:37:16.048 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:37:16.058 -07 000000610 INF: FPGA: 'ZDACW 37566' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:16.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:16.058 -07 000000475 INF: FPGA: Recv ZDACR 37566
17-03-17 19:37:16.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:16.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:37:16.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:16.218 -07 000000551 INF: FPGA: Recv ZSGSRD 36059
17-03-17 19:37:16.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:16.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:16.228 -07 000000501 INF: FPGA: Recv ZSGSRD 36058
17-03-17 19:37:16.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:16.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:16.238 -07 000000475 INF: FPGA: Recv ZSGSRD 36061
17-03-17 19:37:16.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:16.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:16.248 -07 000000551 INF: FPGA: Recv ZSGSRD 36056
17-03-17 19:37:16.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:16.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:16.258 -07 000000475 INF: FPGA: Recv ZSGSRD 36062
17-03-17 19:37:16.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:16.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:16.268 -07 000000501 INF: FPGA: Recv ZSGSRD 36062
17-03-17 19:37:16.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:16.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:16.278 -07 000000512 INF: FPGA: Recv ZSGSRD 36058
17-03-17 19:37:16.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:16.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:16.288 -07 000000501 INF: FPGA: Recv ZSGSRD 36063
17-03-17 19:37:16.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:16.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:16.298 -07 000000512 INF: FPGA: Recv ZSGSRD 36059
17-03-17 19:37:16.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:16.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:16.308 -07 000000501 INF: FPGA: Recv ZSGSRD 36063
17-03-17 19:37:16.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:16.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:16.318 -07 000000512 INF: FPGA: Recv ZPIEZORD 32136
17-03-17 19:37:16.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:16.328 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.732 V. Piezo Error = -8.7 V.
17-03-17 19:37:16.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36060 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36060 (-171.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36056 (-171.1 uncal um), Max = 36063 (-171.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:37:16.328 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36060, posNoise = 3, negNoise = 4
17-03-17 19:37:16.328 -07 000000610 INF: Z Motor: After move to -0.171966, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:16.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:37:16.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:16.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:16.328 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:16.328 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:16.328 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:37:16.328 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:37:16.328 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:37:16.328 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:16.328 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:37:16.328 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:37:16.328 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:37:16.328 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:37:16.328 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:37:16.328 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:37:16.338 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:37:16.338 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:37:16.338 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:37:16.338 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:37:16.348 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:37:16.348 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:37:16.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 37743 150\n [Camera]
17-03-17 19:37:16.548 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:37:16.708 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:37:16.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:37:16.948 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:37:16.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:37:16.948 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:16.948 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:16.948 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1090818152, 0x0, 391868352) start.
17-03-17 19:37:16.948 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:37:16.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:37:16.948 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:16.948 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:16.948 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1126240416, 0x0, 418435064) start.
17-03-17 19:37:17.138 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37743 788
17-03-17 19:37:17.298 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:37:17.348 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1090818152, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:37:17.348 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:37:17.348 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:17.348 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:17.348 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:37:17.348 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1126240416, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:37:17.348 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:37:17.348 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:17.358 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:17.358 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:37:17.488 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:37:17.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:37:17.488 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:17.488 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:17.488 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:37:17.488 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:37:17.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:37:17.488 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:17.488 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:17.488 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:37:17.678 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1324
17-03-17 19:37:17.678 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:37:17.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 37743 150' command took 2 ms to send, 1324 ms to get response, and 1332 ms overall
17-03-17 19:37:17.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:37:17.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.171980441843035. ------
17-03-17 19:37:17.678 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:17.678 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17813 mm
17-03-17 19:37:17.678 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:37:17.688 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38912, sync = True, waitForSettling = False)
17-03-17 19:37:17.688 -07 000000475 INF: Z Motor: Moving to -0.178128 mm, started at -0.171980 mm, distance = -6.15 um
17-03-17 19:37:17.688 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:17.688 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:37:17.688 -07 000000475 INF: FPGA: Xmit ZDACW 38912\n [Z Motor]
17-03-17 19:37:17.688 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:37:17.688 -07 000000551 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 19:37:17.688 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:37:17.698 -07 000000475 INF: FPGA: 'ZDACW 38912' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:37:17.698 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:17.698 -07 000000608 INF: FPGA: Recv ZDACR 38912
17-03-17 19:37:17.708 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:17.708 -07 000000475 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet))
17-03-17 19:37:17.708 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:37:17.718 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:17.718 -07 000000482 INF: FPGA: Recv YRDPOS 126085
17-03-17 19:37:17.728 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-17 19:37:17.728 -07 000000551 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:17.728 -07 000000551 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:37:17.728 -07 000000551 INF: Y Motor: Moving 1340 steps-17
17-03-17 19:37:17.728 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:37:17.888 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 19:37:17.888 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:37:17.888 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:17.888 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 19:37:17.888 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:37:17.888 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:17.898 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:17.898 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:37:17.898 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 19:37:17.908 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:37:17.908 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:37:17.908 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 224 ms overall
17-03-17 19:37:18.108 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:37:18.108 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 378 ms overall
17-03-17 19:37:18.138 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:18.138 -07 000000541 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:37:18.148 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:37:18.148 -07 000000551 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:18.148 -07 000000551 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:37:18.148 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.217 mm/sec
17-03-17 19:37:19.098 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:19.098 -07 000000593 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:37:19.108 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:19.108 -07 000000551 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:19.118 -07 000000551 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:37:19.118 -07 000000551 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:37:19.118 -07 000000551 INF: Y Motor: Moved to 62.3960 after 1436 ms (table move)
17-03-17 19:37:19.128 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178128 mm (DAC = 38912)
17-03-17 19:37:19.128 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:19.128 -07 000000475 INF: FPGA: Recv ZSGSRD 37024
17-03-17 19:37:19.138 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:37:19.138 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:19.138 -07 000000475 INF: FPGA: Recv ZSGSRD 37020
17-03-17 19:37:19.148 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:19.148 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:19.148 -07 000000475 INF: FPGA: Recv ZSGSRD 37012
17-03-17 19:37:19.158 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:19.158 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:19.158 -07 000000551 INF: FPGA: Recv ZSGSRD 37014
17-03-17 19:37:19.168 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:19.168 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:19.168 -07 000000608 INF: FPGA: Recv ZSGSRD 37022
17-03-17 19:37:19.178 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:19.178 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:19.178 -07 000000608 INF: FPGA: Recv ZSGSRD 37020
17-03-17 19:37:19.188 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:19.188 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:19.188 -07 000000486 INF: FPGA: Recv ZSGSRD 37021
17-03-17 19:37:19.198 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:19.198 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:19.198 -07 000000551 INF: FPGA: Recv ZSGSRD 37025
17-03-17 19:37:19.208 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:19.208 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:19.208 -07 000000486 INF: FPGA: Recv ZSGSRD 37020
17-03-17 19:37:19.218 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:19.218 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:19.218 -07 000000501 INF: FPGA: Recv ZSGSRD 37019
17-03-17 19:37:19.228 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:19.228 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:19.228 -07 000000608 INF: FPGA: Recv ZPIEZORD 33409
17-03-17 19:37:19.238 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:19.238 -07 000000547 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.938 V. Piezo Error = -8.0 V.
17-03-17 19:37:19.238 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37020 (-177.3 uncal um), Error = 0.9 uncal um, Median = 37020 (-177.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37012 (-177.2 uncal um), Max = 37025 (-177.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:37:19.238 -07 000000547 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37020, posNoise = 5, negNoise = 8
17-03-17 19:37:19.238 -07 000000547 INF: Z Motor: After move to -0.178128, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:19.238 -07 000000547 INF: Z Motor: Settle wait time = 1442 ms, measure time = 106 ms (allowed 150 ms), total time = 1548 ms
17-03-17 19:37:19.238 -07 000000547 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:37:19.288 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 19:37:19.288 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:37:19.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:19.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:19.288 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:19.288 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:37:19.288 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:19.288 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:19.298 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:19.298 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:37:19.298 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:37:19.298 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:37:19.308 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:37:19.308 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:37:19.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:37:19.358 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:37:19.558 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:37:19.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:37:19.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:37:19.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-17 19:37:19.598 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:37:19.598 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 19:37:19.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 19:37:19.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 19:37:19.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:19.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:37:19.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:37:19.698 -07 000000551 INF: Autofocus start
17-03-17 19:37:19.698 -07 000000551 INF: MeasureProfile start
17-03-17 19:37:19.698 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:19.698 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:19.708 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:37:19.708 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:37:19.708 -07 000000551 INF: MeasureProfile done
17-03-17 19:37:19.708 -07 000000551 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 19:37:19.708 -07 000000551 INF: Autofocus finished
17-03-17 19:37:19.908 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:37:19.908 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:37:19.908 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.178147685499126. ----------
17-03-17 19:37:19.908 -07 000000610 INF: Cycle	28	Tile	4	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:37:19.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37392, sync = True, waitForSettling = True)
17-03-17 19:37:19.918 -07 000000610 INF: Z Motor: Moving to -0.171170 mm, started at -0.178148 mm, distance = 6.98 um
17-03-17 19:37:19.918 -07 000000610 INF: FPGA: Xmit ZDACW 37392\n [Z Motor]
17-03-17 19:37:19.918 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:37:19.928 -07 000000610 INF: FPGA: 'ZDACW 37392' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:37:19.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:19.928 -07 000000551 INF: FPGA: Recv ZDACR 37392
17-03-17 19:37:19.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:19.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:37:20.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:20.088 -07 000000547 INF: FPGA: Recv ZSGSRD 35930
17-03-17 19:37:20.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:20.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:20.098 -07 000000486 INF: FPGA: Recv ZSGSRD 35942
17-03-17 19:37:20.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:20.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:20.108 -07 000000547 INF: FPGA: Recv ZSGSRD 35931
17-03-17 19:37:20.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:20.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:20.118 -07 000000551 INF: FPGA: Recv ZSGSRD 35937
17-03-17 19:37:20.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:20.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:20.128 -07 000000593 INF: FPGA: Recv ZSGSRD 35935
17-03-17 19:37:20.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:20.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:20.138 -07 000000547 INF: FPGA: Recv ZSGSRD 35939
17-03-17 19:37:20.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:20.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:20.148 -07 000000608 INF: FPGA: Recv ZSGSRD 35932
17-03-17 19:37:20.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:20.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:20.158 -07 000000486 INF: FPGA: Recv ZSGSRD 35929
17-03-17 19:37:20.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:20.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:20.168 -07 000000608 INF: FPGA: Recv ZSGSRD 35939
17-03-17 19:37:20.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:20.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:20.178 -07 000000486 INF: FPGA: Recv ZSGSRD 35938
17-03-17 19:37:20.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:20.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:20.188 -07 000000608 INF: FPGA: Recv ZPIEZORD 31955
17-03-17 19:37:20.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:20.198 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.706 V. Piezo Error = -8.8 V.
17-03-17 19:37:20.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35935 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35936 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35929 (-170.3 uncal um), Max = 35942 (-170.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:37:20.198 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35935, posNoise = 7, negNoise = 6
17-03-17 19:37:20.198 -07 000000610 INF: Z Motor: After move to -0.171170, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:20.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:37:20.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:20.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:20.198 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:20.198 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:20.198 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:37:20.198 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:37:20.198 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:37:20.198 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:20.198 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:37:20.198 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:37:20.198 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:20.198 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:37:20.208 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:37:20.208 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:37:20.208 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:37:20.208 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:37:20.208 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:37:20.208 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:37:20.218 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:37:20.218 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:37:20.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 37569 150\n [Camera]
17-03-17 19:37:20.418 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:37:20.818 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:37:20.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:37:20.818 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:20.818 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:20.818 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:37:20.818 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:37:20.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:37:20.828 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:20.958 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:20.958 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:37:20.978 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.985358,
17-03-17 19:37:21.008 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37569 789
17-03-17 19:37:21.158 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:37:21.208 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:37:21.208 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:37:21.208 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:21.208 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:21.208 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:37:21.338 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:37:21.338 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:37:21.338 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:21.338 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:37:21.348 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-17 19:37:21.358 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:37:21.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:37:21.358 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:21.358 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:37:21.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:37:21.358 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:21.368 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:21.368 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 19:37:21.368 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:21.368 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 19:37:21.548 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1324
17-03-17 19:37:21.548 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:37:21.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 37569 150' command took 2 ms to send, 1324 ms to get response, and 1331 ms overall
17-03-17 19:37:21.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:37:21.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.171177415325315. ------
17-03-17 19:37:21.558 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17750 mm
17-03-17 19:37:21.558 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:37:21.558 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:21.558 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:21.558 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:37:21.558 -07 000000501 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 19:37:21.558 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38775, sync = True, waitForSettling = False)
17-03-17 19:37:21.558 -07 000000482 INF: Z Motor: Moving to -0.177501 mm, started at -0.171177 mm, distance = -6.32 um
17-03-17 19:37:21.568 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:37:21.568 -07 000000482 INF: FPGA: Xmit ZDACW 38775\n [Z Motor]
17-03-17 19:37:21.568 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:37:21.578 -07 000000482 INF: FPGA: 'ZDACW 38775' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:37:21.578 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:21.578 -07 000000541 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:37:21.588 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:37:21.588 -07 000000501 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:21.588 -07 000000501 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:37:21.588 -07 000000501 INF: Y Motor: Moving 1339 steps-14
17-03-17 19:37:21.588 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:37:21.598 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:21.598 -07 000000478 INF: FPGA: Recv ZDACR 38775
17-03-17 19:37:21.608 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:37:21.608 -07 000000482 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 19:37:21.608 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:37:21.708 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:37:21.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:37:21.748 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:37:21.748 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:37:21.748 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:21.758 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:37:21.758 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:37:21.758 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:21.758 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:37:21.758 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:37:21.758 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:37:21.768 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:37:21.788 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:37:21.788 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 19:37:21.978 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:37:21.978 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 19:37:22.018 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:22.018 -07 000000512 INF: FPGA: Recv YRDPOS 129484
17-03-17 19:37:22.028 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:37:22.028 -07 000000501 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:22.028 -07 000000501 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:37:22.028 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.102 mm/sec
17-03-17 19:37:22.978 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:22.978 -07 000000551 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:37:22.988 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:22.988 -07 000000501 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:23.008 -07 000000501 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:37:23.008 -07 000000501 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:37:23.008 -07 000000501 INF: Y Motor: Moved to 63.2251 after 1450 ms (table move)
17-03-17 19:37:23.008 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177501 mm (DAC = 38775)
17-03-17 19:37:23.008 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:23.018 -07 000000547 INF: FPGA: Recv ZSGSRD 36923
17-03-17 19:37:23.018 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 19:37:23.018 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:23.018 -07 000000608 INF: FPGA: Recv ZSGSRD 36918
17-03-17 19:37:23.028 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:37:23.028 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:23.028 -07 000000593 INF: FPGA: Recv ZSGSRD 36920
17-03-17 19:37:23.038 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:23.038 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:23.038 -07 000000608 INF: FPGA: Recv ZSGSRD 36922
17-03-17 19:37:23.048 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:23.048 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:23.048 -07 000000501 INF: FPGA: Recv ZSGSRD 36930
17-03-17 19:37:23.058 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:23.058 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:23.058 -07 000000551 INF: FPGA: Recv ZSGSRD 36919
17-03-17 19:37:23.068 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:23.068 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:23.068 -07 000000512 INF: FPGA: Recv ZSGSRD 36920
17-03-17 19:37:23.078 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:23.078 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:23.078 -07 000000501 INF: FPGA: Recv ZSGSRD 36917
17-03-17 19:37:23.088 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:23.088 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:23.088 -07 000000608 INF: FPGA: Recv ZSGSRD 36917
17-03-17 19:37:23.098 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:23.098 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:23.098 -07 000000501 INF: FPGA: Recv ZSGSRD 36923
17-03-17 19:37:23.108 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:23.108 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:23.108 -07 000000608 INF: FPGA: Recv ZPIEZORD 33280
17-03-17 19:37:23.118 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:23.118 -07 000000486 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.917 V. Piezo Error = -8.1 V.
17-03-17 19:37:23.118 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36921 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36920 (-176.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36917 (-176.6 uncal um), Max = 36930 (-176.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:37:23.118 -07 000000486 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36921, posNoise = 9, negNoise = 4
17-03-17 19:37:23.118 -07 000000486 INF: Z Motor: After move to -0.177501, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:23.118 -07 000000486 INF: Z Motor: Settle wait time = 1452 ms, measure time = 103 ms (allowed 150 ms), total time = 1555 ms
17-03-17 19:37:23.118 -07 000000486 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:37:23.168 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 19:37:23.168 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:37:23.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:23.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:23.168 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:23.168 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:23.168 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:37:23.168 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:23.168 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:37:23.168 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:37:23.178 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:37:23.178 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:37:23.178 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:37:23.178 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:37:23.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:37:23.228 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:37:23.428 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:37:23.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:37:23.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:37:23.558 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:37:23.558 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 19:37:23.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 362 ms to get response, and 369 ms overall
17-03-17 19:37:23.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) start.
17-03-17 19:37:23.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 19:37:23.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:23.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:37:23.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 243 ms.
17-03-17 19:37:23.758 -07 000000501 INF: Autofocus start
17-03-17 19:37:23.758 -07 000000501 INF: MeasureProfile start
17-03-17 19:37:23.758 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:23.758 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:23.768 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:37:23.768 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:37:23.768 -07 000000501 INF: MeasureProfile done
17-03-17 19:37:23.768 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:37:23.768 -07 000000501 INF: Autofocus finished
17-03-17 19:37:23.968 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:37:23.968 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:37:23.968 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.177511688497091. ----------
17-03-17 19:37:23.968 -07 000000610 INF: Cycle	28	Tile	5	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:37:23.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37289, sync = True, waitForSettling = True)
17-03-17 19:37:23.978 -07 000000610 INF: Z Motor: Moving to -0.170698 mm, started at -0.177512 mm, distance = 6.81 um
17-03-17 19:37:23.978 -07 000000610 INF: FPGA: Xmit ZDACW 37289\n [Z Motor]
17-03-17 19:37:23.978 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:37:23.988 -07 000000610 INF: FPGA: 'ZDACW 37289' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:37:23.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:23.988 -07 000000608 INF: FPGA: Recv ZDACR 37289
17-03-17 19:37:23.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:23.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:37:24.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:24.148 -07 000000608 INF: FPGA: Recv ZSGSRD 35866
17-03-17 19:37:24.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:24.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:24.158 -07 000000501 INF: FPGA: Recv ZSGSRD 35861
17-03-17 19:37:24.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:24.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:24.168 -07 000000501 INF: FPGA: Recv ZSGSRD 35857
17-03-17 19:37:24.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:24.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:24.178 -07 000000608 INF: FPGA: Recv ZSGSRD 35859
17-03-17 19:37:24.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:24.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:24.188 -07 000000501 INF: FPGA: Recv ZSGSRD 35860
17-03-17 19:37:24.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:24.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:24.198 -07 000000512 INF: FPGA: Recv ZSGSRD 35868
17-03-17 19:37:24.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:24.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:24.208 -07 000000512 INF: FPGA: Recv ZSGSRD 35866
17-03-17 19:37:24.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:24.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:24.218 -07 000000512 INF: FPGA: Recv ZSGSRD 35856
17-03-17 19:37:24.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:24.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:24.228 -07 000000501 INF: FPGA: Recv ZSGSRD 35863
17-03-17 19:37:24.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:24.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:24.238 -07 000000608 INF: FPGA: Recv ZSGSRD 35857
17-03-17 19:37:24.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:24.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:24.248 -07 000000551 INF: FPGA: Recv ZPIEZORD 31899
17-03-17 19:37:24.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:24.258 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.690 V. Piezo Error = -8.8 V.
17-03-17 19:37:24.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35861 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35860 (-169.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35856 (-169.8 uncal um), Max = 35868 (-169.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:37:24.258 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35861, posNoise = 7, negNoise = 5
17-03-17 19:37:24.258 -07 000000610 INF: Z Motor: After move to -0.170698, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:24.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:37:24.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:24.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:24.258 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:24.258 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:24.258 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:37:24.258 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:24.258 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:37:24.258 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:37:24.258 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:24.258 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:37:24.258 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:37:24.258 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:37:24.268 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:37:24.268 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:37:24.268 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:37:24.268 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:37:24.278 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:37:24.278 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:37:24.278 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:37:24.278 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:37:24.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 37466 150\n [Camera]
17-03-17 19:37:24.478 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:37:24.878 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:37:24.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:37:24.878 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:24.878 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:24.878 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 19:37:24.888 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:37:24.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:37:24.888 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:24.888 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:24.888 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1416316576, 0x0, 418435064) start.
17-03-17 19:37:25.078 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37466 788
17-03-17 19:37:25.218 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:37:25.278 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:37:25.278 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:37:25.278 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:25.278 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1416316576, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:37:25.278 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:37:25.278 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:25.288 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:37:25.288 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:37:25.288 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:25.298 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:37:25.418 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:37:25.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:37:25.418 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:25.418 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:25.418 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1451738840, 0x0, 391868352) start.
17-03-17 19:37:25.418 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:37:25.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:37:25.418 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:25.418 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:25.418 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:37:25.608 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:37:25.608 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:37:25.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 37466 150' command took 2 ms to send, 1328 ms to get response, and 1334 ms overall
17-03-17 19:37:25.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:37:25.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.170702023626825. ------
17-03-17 19:37:25.618 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:25.618 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17714 mm
17-03-17 19:37:25.618 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:37:25.618 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:37:25.618 -07 000000512 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 19:37:25.618 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:25.618 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38696, sync = True, waitForSettling = False)
17-03-17 19:37:25.618 -07 000000551 INF: Z Motor: Moving to -0.177139 mm, started at -0.170702 mm, distance = -6.44 um
17-03-17 19:37:25.628 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:37:25.628 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:25.628 -07 000000475 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:37:25.638 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:37:25.638 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:37:25.638 -07 000000512 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:25.638 -07 000000512 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:37:25.638 -07 000000512 INF: Y Motor: Moving 1340 steps-16
17-03-17 19:37:25.648 -07 000000551 INF: FPGA: Xmit ZDACW 38696\n [Z Motor]
17-03-17 19:37:25.648 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:37:25.658 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:37:25.658 -07 000000551 INF: FPGA: 'ZDACW 38696' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:37:25.668 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:25.668 -07 000000501 INF: FPGA: Recv ZDACR 38696
17-03-17 19:37:25.678 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:37:25.678 -07 000000551 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 19:37:25.818 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1451738840, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 19:37:25.818 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:37:25.818 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:25.828 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 19:37:25.828 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:37:25.828 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:25.828 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:25.828 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:37:25.828 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 19:37:25.838 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:37:25.838 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:37:25.838 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 19:37:26.028 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 19:37:26.028 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:37:26.068 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:26.068 -07 000000551 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:37:26.078 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:37:26.078 -07 000000512 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:26.078 -07 000000512 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 19:37:26.078 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.104 mm/sec
17-03-17 19:37:26.338 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.981281,
17-03-17 19:37:26.708 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:37:26.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:37:27.028 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:27.028 -07 000000551 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:37:27.038 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:27.038 -07 000000512 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:27.048 -07 000000512 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:37:27.048 -07 000000512 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:37:27.048 -07 000000512 INF: Y Motor: Moved to 64.0576 after 1428 ms (table move)
17-03-17 19:37:27.058 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177139 mm (DAC = 38696)
17-03-17 19:37:27.058 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:27.058 -07 000000512 INF: FPGA: Recv ZSGSRD 36861
17-03-17 19:37:27.068 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:27.068 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:27.068 -07 000000501 INF: FPGA: Recv ZSGSRD 36857
17-03-17 19:37:27.078 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:27.078 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:27.078 -07 000000512 INF: FPGA: Recv ZSGSRD 36868
17-03-17 19:37:27.088 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:27.088 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:27.088 -07 000000478 INF: FPGA: Recv ZSGSRD 36868
17-03-17 19:37:27.098 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:27.098 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:27.098 -07 000000501 INF: FPGA: Recv ZSGSRD 36867
17-03-17 19:37:27.108 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:27.108 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:27.108 -07 000000478 INF: FPGA: Recv ZSGSRD 36867
17-03-17 19:37:27.118 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:27.118 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:27.118 -07 000000501 INF: FPGA: Recv ZSGSRD 36866
17-03-17 19:37:27.128 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:27.128 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:27.128 -07 000000478 INF: FPGA: Recv ZSGSRD 36862
17-03-17 19:37:27.138 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:27.138 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:27.138 -07 000000501 INF: FPGA: Recv ZSGSRD 36855
17-03-17 19:37:27.148 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:27.148 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:27.148 -07 000000478 INF: FPGA: Recv ZSGSRD 36860
17-03-17 19:37:27.158 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:27.158 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:27.158 -07 000000501 INF: FPGA: Recv ZPIEZORD 33186
17-03-17 19:37:27.168 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:27.168 -07 000000541 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.905 V. Piezo Error = -8.2 V.
17-03-17 19:37:27.168 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36863 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36864 (-176.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36855 (-176.2 uncal um), Max = 36868 (-176.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:37:27.168 -07 000000541 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36863, posNoise = 5, negNoise = 8
17-03-17 19:37:27.168 -07 000000541 INF: Z Motor: After move to -0.177139, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:27.168 -07 000000541 INF: Z Motor: Settle wait time = 1430 ms, measure time = 111 ms (allowed 150 ms), total time = 1541 ms
17-03-17 19:37:27.168 -07 000000541 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 19:37:27.208 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 19:37:27.208 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:37:27.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:27.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:27.208 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:27.208 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:27.208 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:37:27.208 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:27.208 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:27.208 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:37:27.218 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:37:27.218 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:37:27.228 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:37:27.228 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 19:37:27.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:37:27.268 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:37:27.468 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:37:27.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:37:27.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:37:27.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-17 19:37:27.508 -07 000000478 INF: FPGA: Recv @CAMSNAP 281
17-03-17 19:37:27.518 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 19:37:27.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 286 ms overall
17-03-17 19:37:27.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 19:37:27.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:27.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:37:27.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 19:37:27.618 -07 000000501 INF: Autofocus start
17-03-17 19:37:27.618 -07 000000501 INF: MeasureProfile start
17-03-17 19:37:27.618 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:27.618 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:27.628 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:37:27.628 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:37:27.628 -07 000000501 INF: MeasureProfile done
17-03-17 19:37:27.628 -07 000000501 INF: X=48  Z correction [um]=0.1739867
17-03-17 19:37:27.628 -07 000000501 INF: Autofocus finished
17-03-17 19:37:27.828 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:37:27.828 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 19:37:27.828 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.177139084192869. ----------
17-03-17 19:37:27.828 -07 000000610 INF: Cycle	28	Tile	6	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:37:27.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37247, sync = True, waitForSettling = True)
17-03-17 19:37:27.838 -07 000000610 INF: Z Motor: Moving to -0.170506 mm, started at -0.177139 mm, distance = 6.63 um
17-03-17 19:37:27.838 -07 000000610 INF: FPGA: Xmit ZDACW 37247\n [Z Motor]
17-03-17 19:37:27.838 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:37:27.848 -07 000000610 INF: FPGA: 'ZDACW 37247' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:37:27.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:27.848 -07 000000541 INF: FPGA: Recv ZDACR 37247
17-03-17 19:37:27.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:27.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:37:28.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:28.008 -07 000000478 INF: FPGA: Recv ZSGSRD 35837
17-03-17 19:37:28.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:28.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:28.018 -07 000000501 INF: FPGA: Recv ZSGSRD 35833
17-03-17 19:37:28.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:28.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:28.028 -07 000000541 INF: FPGA: Recv ZSGSRD 35832
17-03-17 19:37:28.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:28.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:28.038 -07 000000501 INF: FPGA: Recv ZSGSRD 35829
17-03-17 19:37:28.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:28.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:28.048 -07 000000541 INF: FPGA: Recv ZSGSRD 35833
17-03-17 19:37:28.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:28.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:28.058 -07 000000541 INF: FPGA: Recv ZSGSRD 35833
17-03-17 19:37:28.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:28.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:28.068 -07 000000512 INF: FPGA: Recv ZSGSRD 35831
17-03-17 19:37:28.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:28.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:28.078 -07 000000541 INF: FPGA: Recv ZSGSRD 35829
17-03-17 19:37:28.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:28.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:28.088 -07 000000478 INF: FPGA: Recv ZSGSRD 35830
17-03-17 19:37:28.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:28.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:28.098 -07 000000541 INF: FPGA: Recv ZSGSRD 35834
17-03-17 19:37:28.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:28.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:28.108 -07 000000478 INF: FPGA: Recv ZPIEZORD 31844
17-03-17 19:37:28.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:28.118 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -8.8 V.
17-03-17 19:37:28.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35832 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35832 (-169.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35829 (-169.6 uncal um), Max = 35837 (-169.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:37:28.118 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35832, posNoise = 5, negNoise = 3
17-03-17 19:37:28.118 -07 000000610 INF: Z Motor: After move to -0.170506, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:28.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:37:28.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:28.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:28.118 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:28.118 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:28.118 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:37:28.118 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:37:28.118 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:37:28.118 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:28.118 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:37:28.118 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:37:28.118 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:37:28.118 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:37:28.128 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:37:28.128 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:37:28.128 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:37:28.128 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:37:28.138 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:37:28.138 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:37:28.138 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:37:28.138 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:37:28.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 37424 150\n [Camera]
17-03-17 19:37:28.338 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:37:28.738 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:37:28.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:37:28.738 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:28.738 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:28.738 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1090818152, 0x0, 391868352) start.
17-03-17 19:37:28.748 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:37:28.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:37:28.748 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:28.748 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:28.748 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1126240416, 0x0, 418435064) start.
17-03-17 19:37:28.938 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37424 788
17-03-17 19:37:29.088 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:37:29.118 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1126240416, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 19:37:29.118 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 19:37:29.118 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:29.118 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:29.118 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1090818152, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:37:29.118 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:37:29.118 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:29.128 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:29.128 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:37:29.128 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:37:29.278 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:37:29.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:37:29.278 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:29.398 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:37:29.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:37:29.398 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:29.408 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:29.408 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:37:29.408 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:29.408 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:37:29.468 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:37:29.468 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:37:29.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 37424 150' command took 4 ms to send, 1327 ms to get response, and 1331 ms overall
17-03-17 19:37:29.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:37:29.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.170515721474714. ------
17-03-17 19:37:29.478 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:29.478 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17701 mm
17-03-17 19:37:29.478 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:37:29.478 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:37:29.478 -07 000000512 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 19:37:29.478 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:29.478 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38667, sync = True, waitForSettling = False)
17-03-17 19:37:29.478 -07 000000482 INF: Z Motor: Moving to -0.177006 mm, started at -0.170516 mm, distance = -6.49 um
17-03-17 19:37:29.488 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:37:29.488 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:37:29.498 -07 000000482 INF: FPGA: Xmit ZDACW 38667\n [Z Motor]
17-03-17 19:37:29.498 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:37:29.508 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:29.508 -07 000000482 INF: FPGA: 'ZDACW 38667' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:37:29.508 -07 000000475 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:37:29.518 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-17 19:37:29.518 -07 000000512 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:29.518 -07 000000512 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:37:29.518 -07 000000512 INF: Y Motor: Moving 1336 steps-11
17-03-17 19:37:29.518 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:29.518 -07 000000486 INF: FPGA: Recv ZDACR 38667
17-03-17 19:37:29.528 -07 000000482 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:37:29.528 -07 000000482 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 19:37:29.528 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:37:29.688 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:37:29.688 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:37:29.798 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:37:29.798 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:37:29.798 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:29.798 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 19:37:29.798 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:37:29.798 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:29.808 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:37:29.808 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-17 19:37:29.808 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:37:29.808 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:37:29.898 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 19:37:29.898 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 19:37:29.928 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:29.938 -07 000000482 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:37:29.938 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:37:29.938 -07 000000512 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:29.938 -07 000000512 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:37:29.938 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.835 mm, average velocity = 2.169 mm/sec
17-03-17 19:37:30.888 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:30.888 -07 000000626 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:37:30.898 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:30.898 -07 000000512 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:30.918 -07 000000512 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:37:30.918 -07 000000512 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:37:30.918 -07 000000512 INF: Y Motor: Moved to 64.8794 after 1436 ms (table move)
17-03-17 19:37:30.918 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177006 mm (DAC = 38667)
17-03-17 19:37:30.918 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:30.918 -07 000000551 INF: FPGA: Recv ZSGSRD 36841
17-03-17 19:37:30.928 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:37:30.928 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:30.928 -07 000000551 INF: FPGA: Recv ZSGSRD 36836
17-03-17 19:37:30.938 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:30.938 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:30.938 -07 000000608 INF: FPGA: Recv ZSGSRD 36836
17-03-17 19:37:30.948 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:30.948 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:30.948 -07 000000551 INF: FPGA: Recv ZSGSRD 36843
17-03-17 19:37:30.958 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:30.958 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:30.958 -07 000000608 INF: FPGA: Recv ZSGSRD 36843
17-03-17 19:37:30.968 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:30.968 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:30.968 -07 000000608 INF: FPGA: Recv ZSGSRD 36844
17-03-17 19:37:30.978 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:30.978 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:30.978 -07 000000551 INF: FPGA: Recv ZSGSRD 36849
17-03-17 19:37:30.988 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:30.988 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:30.988 -07 000000608 INF: FPGA: Recv ZSGSRD 36845
17-03-17 19:37:30.998 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:30.998 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:30.998 -07 000000551 INF: FPGA: Recv ZSGSRD 36847
17-03-17 19:37:31.008 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:31.008 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:31.008 -07 000000551 INF: FPGA: Recv ZSGSRD 36838
17-03-17 19:37:31.018 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:31.018 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:31.018 -07 000000593 INF: FPGA: Recv ZPIEZORD 33183
17-03-17 19:37:31.028 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:31.028 -07 000000478 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.900 V. Piezo Error = -8.1 V.
17-03-17 19:37:31.028 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36842 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36843 (-176.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36836 (-176.1 uncal um), Max = 36849 (-176.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:37:31.028 -07 000000478 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36842, posNoise = 7, negNoise = 6
17-03-17 19:37:31.028 -07 000000478 INF: Z Motor: After move to -0.177006, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:31.028 -07 000000478 INF: Z Motor: Settle wait time = 1438 ms, measure time = 107 ms (allowed 150 ms), total time = 1545 ms
17-03-17 19:37:31.028 -07 000000478 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:37:31.078 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 19:37:31.078 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:37:31.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:31.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:31.078 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:31.078 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:31.078 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:37:31.078 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:31.078 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:37:31.078 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:37:31.088 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:37:31.088 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:37:31.088 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:37:31.088 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:37:31.098 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:37:31.138 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:37:31.338 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:37:31.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:37:31.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:37:31.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-17 19:37:31.378 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:37:31.378 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 19:37:31.378 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 19:37:31.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:37:31.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:31.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:37:31.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:37:31.478 -07 000000551 INF: Autofocus start
17-03-17 19:37:31.478 -07 000000551 INF: MeasureProfile start
17-03-17 19:37:31.478 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:31.478 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:31.488 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:37:31.488 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:37:31.488 -07 000000551 INF: MeasureProfile done
17-03-17 19:37:31.488 -07 000000551 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:37:31.488 -07 000000551 INF: Autofocus finished
17-03-17 19:37:31.688 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:37:31.688 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:37:31.688 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.177004175737892. ----------
17-03-17 19:37:31.688 -07 000000610 INF: Cycle	28	Tile	7	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:37:31.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37164, sync = True, waitForSettling = True)
17-03-17 19:37:31.698 -07 000000610 INF: Z Motor: Moving to -0.170126 mm, started at -0.177004 mm, distance = 6.88 um
17-03-17 19:37:31.708 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:37:31.708 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.003063,
17-03-17 19:37:31.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:37:31.718 -07 000000610 INF: FPGA: Xmit ZDACW 37164\n [Z Motor]
17-03-17 19:37:31.718 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:37:31.728 -07 000000610 INF: FPGA: 'ZDACW 37164' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:37:31.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:31.738 -07 000000551 INF: FPGA: Recv ZDACR 37164
17-03-17 19:37:31.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:37:31.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:37:31.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:31.898 -07 000000541 INF: FPGA: Recv ZSGSRD 35766
17-03-17 19:37:31.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:31.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:31.908 -07 000000478 INF: FPGA: Recv ZSGSRD 35777
17-03-17 19:37:31.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:31.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:31.918 -07 000000541 INF: FPGA: Recv ZSGSRD 35777
17-03-17 19:37:31.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:31.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:31.928 -07 000000593 INF: FPGA: Recv ZSGSRD 35772
17-03-17 19:37:31.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:31.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:31.938 -07 000000551 INF: FPGA: Recv ZSGSRD 35774
17-03-17 19:37:31.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:31.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:31.948 -07 000000593 INF: FPGA: Recv ZSGSRD 35773
17-03-17 19:37:31.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:31.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:31.958 -07 000000541 INF: FPGA: Recv ZSGSRD 35768
17-03-17 19:37:31.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:31.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:31.968 -07 000000478 INF: FPGA: Recv ZSGSRD 35777
17-03-17 19:37:31.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:31.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:31.978 -07 000000551 INF: FPGA: Recv ZSGSRD 35769
17-03-17 19:37:31.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:31.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:31.988 -07 000000551 INF: FPGA: Recv ZSGSRD 35775
17-03-17 19:37:31.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:31.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:31.998 -07 000000593 INF: FPGA: Recv ZPIEZORD 31727
17-03-17 19:37:32.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:32.008 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.671 V. Piezo Error = -8.9 V.
17-03-17 19:37:32.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35773 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35774 (-169.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35766 (-169.2 uncal um), Max = 35777 (-169.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:37:32.008 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35773, posNoise = 4, negNoise = 7
17-03-17 19:37:32.008 -07 000000610 INF: Z Motor: After move to -0.170126, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:32.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 309 ms)
17-03-17 19:37:32.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:32.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:32.008 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:32.008 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:37:32.008 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:37:32.008 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:32.008 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:37:32.008 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:37:32.008 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:37:32.008 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:32.008 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:32.008 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:37:32.018 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:37:32.018 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:37:32.018 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:37:32.018 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:37:32.028 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:37:32.028 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:37:32.028 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:37:32.028 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:37:32.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 37341 150\n [Camera]
17-03-17 19:37:32.238 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:37:32.648 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:37:32.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:37:32.648 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:32.648 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:32.648 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:37:32.648 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:37:32.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:37:32.648 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:32.768 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:32.768 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:37:32.838 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37341 788
17-03-17 19:37:32.988 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:37:33.028 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:37:33.028 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:37:33.038 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:33.038 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:33.038 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:37:33.148 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:37:33.148 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:37:33.148 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:33.158 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:33.158 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 19:37:33.188 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:37:33.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:37:33.188 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:33.188 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:37:33.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:37:33.188 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:33.188 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:33.188 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:37:33.188 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:33.188 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:37:33.378 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:37:33.378 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:37:33.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 37341 150' command took 2 ms to send, 1322 ms to get response, and 1347 ms overall
17-03-17 19:37:33.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:37:33.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.17013669295835. ------
17-03-17 19:37:33.378 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:33.378 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17670 mm
17-03-17 19:37:33.378 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:37:33.388 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:33.388 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:37:33.388 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:37:33.388 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:37:33.388 -07 000000475 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 19:37:33.388 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38601, sync = True, waitForSettling = False)
17-03-17 19:37:33.388 -07 000000482 INF: Z Motor: Moving to -0.176704 mm, started at -0.170137 mm, distance = -6.57 um
17-03-17 19:37:33.398 -07 000000482 INF: FPGA: Xmit ZDACW 38601\n [Z Motor]
17-03-17 19:37:33.398 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:37:33.408 -07 000000482 INF: FPGA: 'ZDACW 38601' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:37:33.408 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:33.408 -07 000000593 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:37:33.418 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:37:33.418 -07 000000475 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:33.418 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:33.418 -07 000000551 INF: FPGA: Recv ZDACR 38601
17-03-17 19:37:33.418 -07 000000475 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:37:33.418 -07 000000475 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:37:33.428 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:37:33.428 -07 000000482 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 19:37:33.428 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:37:33.588 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:37:33.588 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:37:33.588 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:33.588 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:37:33.588 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:37:33.588 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:33.588 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:37:33.588 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:37:33.588 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:33.598 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:37:34.248 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:37:34.248 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:37:34.248 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 810 ms to get response, and 826 ms overall
17-03-17 19:37:34.248 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 850 ms to get response, and 858 ms overall
17-03-17 19:37:34.278 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:34.278 -07 000000593 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:37:34.288 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:37:34.288 -07 000000475 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:34.288 -07 000000475 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:37:34.288 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 827 ms, distance = 0.843 mm, average velocity = 1.020 mm/sec
17-03-17 19:37:35.238 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:35.238 -07 000000486 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:37:35.248 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:35.248 -07 000000475 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:35.268 -07 000000475 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:37:35.268 -07 000000475 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:37:35.268 -07 000000475 INF: Y Motor: Moved to 65.7148 after 1879 ms (table move)
17-03-17 19:37:35.268 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176704 mm (DAC = 38601)
17-03-17 19:37:35.268 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:35.268 -07 000000512 INF: FPGA: Recv ZSGSRD 36802
17-03-17 19:37:35.278 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:37:35.278 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:35.278 -07 000000478 INF: FPGA: Recv ZSGSRD 36792
17-03-17 19:37:35.288 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:35.288 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:35.288 -07 000000512 INF: FPGA: Recv ZSGSRD 36793
17-03-17 19:37:35.298 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:35.298 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:35.298 -07 000000478 INF: FPGA: Recv ZSGSRD 36789
17-03-17 19:37:35.308 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:35.308 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:35.308 -07 000000512 INF: FPGA: Recv ZSGSRD 36793
17-03-17 19:37:35.318 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:35.318 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:35.318 -07 000000475 INF: FPGA: Recv ZSGSRD 36793
17-03-17 19:37:35.328 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:35.328 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:35.328 -07 000000551 INF: FPGA: Recv ZSGSRD 36803
17-03-17 19:37:35.338 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:35.338 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:35.338 -07 000000475 INF: FPGA: Recv ZSGSRD 36798
17-03-17 19:37:35.348 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:35.348 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:35.348 -07 000000626 INF: FPGA: Recv ZSGSRD 36795
17-03-17 19:37:35.358 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:35.358 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:35.358 -07 000000486 INF: FPGA: Recv ZSGSRD 36792
17-03-17 19:37:35.368 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:35.368 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:35.368 -07 000000478 INF: FPGA: Recv ZPIEZORD 33071
17-03-17 19:37:35.378 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:35.378 -07 000000541 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.890 V. Piezo Error = -8.3 V.
17-03-17 19:37:35.378 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36795 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36793 (-175.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36789 (-175.8 uncal um), Max = 36803 (-175.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:37:35.378 -07 000000541 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36795, posNoise = 8, negNoise = 6
17-03-17 19:37:35.378 -07 000000541 INF: Z Motor: After move to -0.176704, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:35.378 -07 000000541 INF: Z Motor: Settle wait time = 1882 ms, measure time = 104 ms (allowed 150 ms), total time = 1986 ms
17-03-17 19:37:35.378 -07 000000541 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:37:35.428 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2041 ms
17-03-17 19:37:35.428 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:37:35.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:35.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:35.428 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:35.428 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:35.428 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:37:35.428 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:35.428 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:35.428 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:37:35.438 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:37:35.438 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:37:35.448 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:37:35.448 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:37:35.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:37:35.488 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:37:35.688 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:37:35.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:37:35.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:37:35.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-17 19:37:35.728 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:37:35.728 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 19:37:35.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 19:37:35.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 19:37:35.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:35.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:37:35.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 19:37:35.828 -07 000000541 INF: Autofocus start
17-03-17 19:37:35.828 -07 000000541 INF: MeasureProfile start
17-03-17 19:37:35.828 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:35.828 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:35.838 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:37:35.838 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:37:35.838 -07 000000541 INF: MeasureProfile done
17-03-17 19:37:35.838 -07 000000541 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:37:35.838 -07 000000541 INF: Autofocus finished
17-03-17 19:37:36.038 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:37:36.038 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:37:36.038 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.176702237767229. ----------
17-03-17 19:37:36.038 -07 000000610 INF: Cycle	28	Tile	8	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:37:36.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37098, sync = True, waitForSettling = True)
17-03-17 19:37:36.048 -07 000000610 INF: Z Motor: Moving to -0.169824 mm, started at -0.176702 mm, distance = 6.88 um
17-03-17 19:37:36.048 -07 000000610 INF: FPGA: Xmit ZDACW 37098\n [Z Motor]
17-03-17 19:37:36.048 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:37:36.058 -07 000000610 INF: FPGA: 'ZDACW 37098' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:36.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:36.058 -07 000000541 INF: FPGA: Recv ZDACR 37098
17-03-17 19:37:36.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:36.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:37:36.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:36.218 -07 000000626 INF: FPGA: Recv ZSGSRD 35729
17-03-17 19:37:36.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:36.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:36.228 -07 000000475 INF: FPGA: Recv ZSGSRD 35727
17-03-17 19:37:36.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:36.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:36.238 -07 000000478 INF: FPGA: Recv ZSGSRD 35728
17-03-17 19:37:36.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:36.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:36.248 -07 000000541 INF: FPGA: Recv ZSGSRD 35725
17-03-17 19:37:36.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:36.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:36.258 -07 000000551 INF: FPGA: Recv ZSGSRD 35725
17-03-17 19:37:36.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:36.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:36.268 -07 000000475 INF: FPGA: Recv ZSGSRD 35728
17-03-17 19:37:36.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:36.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:36.278 -07 000000478 INF: FPGA: Recv ZSGSRD 35724
17-03-17 19:37:36.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:36.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:36.288 -07 000000486 INF: FPGA: Recv ZSGSRD 35726
17-03-17 19:37:36.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:36.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:36.298 -07 000000626 INF: FPGA: Recv ZSGSRD 35722
17-03-17 19:37:36.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:36.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:36.308 -07 000000593 INF: FPGA: Recv ZSGSRD 35730
17-03-17 19:37:36.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:36.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:36.318 -07 000000541 INF: FPGA: Recv ZPIEZORD 31704
17-03-17 19:37:36.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:36.328 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.661 V. Piezo Error = -8.9 V.
17-03-17 19:37:36.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35726 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35726 (-169.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35722 (-168.9 uncal um), Max = 35730 (-169.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:37:36.328 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35726, posNoise = 4, negNoise = 4
17-03-17 19:37:36.328 -07 000000610 INF: Z Motor: After move to -0.169824, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:36.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:37:36.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:36.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:36.328 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:36.328 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:36.328 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:37:36.328 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:36.328 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:37:36.328 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:37:36.328 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:36.328 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:37:36.328 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:37:36.328 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:37:36.338 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:37:36.338 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:37:36.338 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:37:36.338 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:37:36.338 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:37:36.338 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:37:36.348 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:37:36.348 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:37:36.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 37274 150\n [Camera]
17-03-17 19:37:36.548 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:37:36.708 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:37:36.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:37:36.948 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:37:36.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:37:36.958 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:36.958 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:37:36.958 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:36.958 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1090818152, 0x0, 391868352) start.
17-03-17 19:37:36.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:37:36.958 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:36.958 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:36.958 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1126240416, 0x0, 418435064) start.
17-03-17 19:37:37.098 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.989471,
17-03-17 19:37:37.148 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37274 788
17-03-17 19:37:37.288 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:37:37.338 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1090818152, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:37:37.338 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:37:37.338 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:37.338 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1126240416, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:37:37.338 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:37:37.338 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:37.338 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:37:37.338 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:37:37.338 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:37:37.348 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:37:37.488 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:37:37.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:37:37.488 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:37.488 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:37.488 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:37:37.488 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:37:37.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:37:37.488 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:37.488 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:37.488 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:37:37.678 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:37:37.678 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:37:37.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 37274 150' command took 2 ms to send, 1327 ms to get response, and 1333 ms overall
17-03-17 19:37:37.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:37:37.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.169834754987687. ------
17-03-17 19:37:37.688 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:37.688 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17612 mm
17-03-17 19:37:37.688 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:37:37.688 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:37.688 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:37:37.688 -07 000000551 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 19:37:37.688 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38473, sync = True, waitForSettling = False)
17-03-17 19:37:37.688 -07 000000475 INF: Z Motor: Moving to -0.176118 mm, started at -0.169835 mm, distance = -6.28 um
17-03-17 19:37:37.698 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:37:37.698 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:37.698 -07 000000478 INF: FPGA: Recv YRDPOS 134585
17-03-17 19:37:37.708 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:37:37.708 -07 000000551 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:37.708 -07 000000475 INF: FPGA: Xmit ZDACW 38473\n [Z Motor]
17-03-17 19:37:37.708 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:37:37.708 -07 000000551 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:37:37.708 -07 000000551 INF: Y Motor: Moving 1340 steps-16
17-03-17 19:37:37.718 -07 000000475 INF: FPGA: 'ZDACW 38473' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:37:37.718 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:37:37.728 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:37:37.738 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:37.738 -07 000000623 INF: FPGA: Recv ZDACR 38473
17-03-17 19:37:37.748 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:37:37.748 -07 000000475 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 19:37:37.868 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:37:37.868 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:37:37.868 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:37.878 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:37.878 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:37:37.878 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:37:37.878 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:37.878 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:37:37.888 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:37:37.888 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:37:37.918 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:37:37.918 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:37:38.098 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:37:38.098 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 19:37:38.138 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:38.138 -07 000000593 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:37:38.148 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:37:38.148 -07 000000551 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:38.148 -07 000000551 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:37:38.148 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.838 mm, average velocity = 2.143 mm/sec
17-03-17 19:37:39.098 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:39.098 -07 000000486 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:37:39.108 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:39.108 -07 000000551 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:39.128 -07 000000551 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:37:39.128 -07 000000551 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:37:39.128 -07 000000551 INF: Y Motor: Moved to 66.5400 after 1433 ms (table move)
17-03-17 19:37:39.128 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176118 mm (DAC = 38473)
17-03-17 19:37:39.128 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:39.128 -07 000000482 INF: FPGA: Recv ZSGSRD 36707
17-03-17 19:37:39.138 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:37:39.138 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:39.138 -07 000000512 INF: FPGA: Recv ZSGSRD 36704
17-03-17 19:37:39.148 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:39.148 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:39.148 -07 000000623 INF: FPGA: Recv ZSGSRD 36704
17-03-17 19:37:39.158 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:39.158 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:39.158 -07 000000551 INF: FPGA: Recv ZSGSRD 36705
17-03-17 19:37:39.168 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:39.168 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:39.168 -07 000000541 INF: FPGA: Recv ZSGSRD 36711
17-03-17 19:37:39.178 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:39.178 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:39.178 -07 000000486 INF: FPGA: Recv ZSGSRD 36707
17-03-17 19:37:39.188 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:39.188 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:39.188 -07 000000482 INF: FPGA: Recv ZSGSRD 36704
17-03-17 19:37:39.198 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:39.198 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:39.198 -07 000000541 INF: FPGA: Recv ZSGSRD 36701
17-03-17 19:37:39.208 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:39.208 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:39.208 -07 000000551 INF: FPGA: Recv ZSGSRD 36697
17-03-17 19:37:39.218 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:39.218 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:39.218 -07 000000626 INF: FPGA: Recv ZSGSRD 36705
17-03-17 19:37:39.228 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:39.228 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:39.228 -07 000000482 INF: FPGA: Recv ZPIEZORD 33010
17-03-17 19:37:39.238 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:39.238 -07 000000501 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.871 V. Piezo Error = -8.2 V.
17-03-17 19:37:39.238 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36704 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36704 (-175.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36697 (-175.2 uncal um), Max = 36711 (-175.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:37:39.238 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36704, posNoise = 7, negNoise = 7
17-03-17 19:37:39.238 -07 000000501 INF: Z Motor: After move to -0.176118, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:39.238 -07 000000501 INF: Z Motor: Settle wait time = 1438 ms, measure time = 104 ms (allowed 150 ms), total time = 1542 ms
17-03-17 19:37:39.238 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:37:39.288 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 19:37:39.288 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:37:39.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:39.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:39.288 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:39.298 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:37:39.298 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:39.298 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:39.298 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:37:39.298 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:37:39.298 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:37:39.298 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:37:39.308 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:37:39.308 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:37:39.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:37:39.348 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:37:39.548 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:37:39.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:37:39.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:37:39.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-17 19:37:39.588 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:37:39.588 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 19:37:39.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 19:37:39.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:37:39.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:39.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:37:39.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:37:39.688 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:39.688 -07 000000482 INF: Autofocus start
17-03-17 19:37:39.688 -07 000000482 INF: MeasureProfile start
17-03-17 19:37:39.688 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:39.698 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:37:39.698 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:37:39.698 -07 000000482 INF: MeasureProfile done
17-03-17 19:37:39.698 -07 000000482 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:37:39.698 -07 000000482 INF: Autofocus finished
17-03-17 19:37:39.898 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:37:39.898 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 19:37:39.908 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.176117634462329. ----------
17-03-17 19:37:39.908 -07 000000610 INF: Cycle	28	Tile	9	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:37:39.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37006, sync = True, waitForSettling = True)
17-03-17 19:37:39.908 -07 000000610 INF: Z Motor: Moving to -0.169403 mm, started at -0.176118 mm, distance = 6.72 um
17-03-17 19:37:39.908 -07 000000610 INF: FPGA: Xmit ZDACW 37006\n [Z Motor]
17-03-17 19:37:39.908 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:37:39.918 -07 000000610 INF: FPGA: 'ZDACW 37006' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:37:39.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:39.918 -07 000000486 INF: FPGA: Recv ZDACR 37006
17-03-17 19:37:39.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:39.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:37:40.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:40.078 -07 000000551 INF: FPGA: Recv ZSGSRD 35655
17-03-17 19:37:40.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:40.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:40.088 -07 000000486 INF: FPGA: Recv ZSGSRD 35663
17-03-17 19:37:40.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:40.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:40.098 -07 000000551 INF: FPGA: Recv ZSGSRD 35660
17-03-17 19:37:40.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:40.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:40.108 -07 000000486 INF: FPGA: Recv ZSGSRD 35659
17-03-17 19:37:40.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:40.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:40.118 -07 000000541 INF: FPGA: Recv ZSGSRD 35659
17-03-17 19:37:40.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:40.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:40.128 -07 000000486 INF: FPGA: Recv ZSGSRD 35661
17-03-17 19:37:40.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:40.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:40.138 -07 000000541 INF: FPGA: Recv ZSGSRD 35663
17-03-17 19:37:40.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:40.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:40.148 -07 000000551 INF: FPGA: Recv ZSGSRD 35659
17-03-17 19:37:40.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:40.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:40.158 -07 000000541 INF: FPGA: Recv ZSGSRD 35662
17-03-17 19:37:40.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:40.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:40.168 -07 000000551 INF: FPGA: Recv ZSGSRD 35658
17-03-17 19:37:40.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:40.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:40.178 -07 000000541 INF: FPGA: Recv ZPIEZORD 31602
17-03-17 19:37:40.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:40.188 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.647 V. Piezo Error = -9.0 V.
17-03-17 19:37:40.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35660 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35660 (-168.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35655 (-168.5 uncal um), Max = 35663 (-168.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:37:40.188 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35660, posNoise = 3, negNoise = 5
17-03-17 19:37:40.188 -07 000000610 INF: Z Motor: After move to -0.169403, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:40.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:37:40.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:40.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:40.188 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:40.188 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:40.188 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:37:40.188 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:37:40.188 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:37:40.188 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:40.188 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:37:40.188 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:37:40.188 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:40.188 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:37:40.198 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:37:40.198 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:37:40.198 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:37:40.198 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:37:40.208 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:37:40.208 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:37:40.208 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:37:40.208 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:37:40.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 37183 150\n [Camera]
17-03-17 19:37:40.408 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:37:40.808 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:37:40.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:37:40.808 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:40.808 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:40.808 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:37:40.808 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:37:40.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:37:40.818 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:40.818 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:40.818 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:37:40.998 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37183 788
17-03-17 19:37:41.148 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:37:41.198 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:37:41.208 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:37:41.208 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:41.208 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:37:41.208 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:37:41.208 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:41.208 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:41.208 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:41.208 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:37:41.218 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:37:41.348 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:37:41.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:37:41.348 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:41.348 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:41.348 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 19:37:41.348 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:37:41.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:37:41.348 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:41.348 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:41.348 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 19:37:41.538 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:37:41.538 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:37:41.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 37183 150' command took 2 ms to send, 1325 ms to get response, and 1332 ms overall
17-03-17 19:37:41.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:37:41.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.169410756986331. ------
17-03-17 19:37:41.548 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:41.548 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17622 mm
17-03-17 19:37:41.548 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:37:41.678 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:41.678 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 134 ms overall
17-03-17 19:37:41.678 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:37:41.678 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38494, sync = True, waitForSettling = False)
17-03-17 19:37:41.678 -07 000000482 INF: Z Motor: Moving to -0.176214 mm, started at -0.169411 mm, distance = -6.80 um
17-03-17 19:37:41.678 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:37:41.678 -07 000000608 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 19:37:41.688 -07 000000482 INF: FPGA: Xmit ZDACW 38494\n [Z Motor]
17-03-17 19:37:41.688 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:37:41.698 -07 000000482 INF: FPGA: 'ZDACW 38494' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:37:41.698 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:41.698 -07 000000431 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:37:41.708 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:41.708 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:37:41.708 -07 000000608 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:41.708 -07 000000608 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:37:41.708 -07 000000608 INF: Y Motor: Moving 1348 steps-26
17-03-17 19:37:41.708 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:37:41.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:37:41.708 -07 000000593 INF: FPGA: Recv ZDACR 38494
17-03-17 19:37:41.718 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:37:41.718 -07 000000482 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 19:37:41.718 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:37:41.758 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 407 ms.
17-03-17 19:37:41.758 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:37:41.758 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:41.758 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 406 ms.
17-03-17 19:37:41.758 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:37:41.758 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:41.758 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:41.768 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:37:41.768 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 19:37:41.768 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 19:37:41.878 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:37:41.878 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-17 19:37:42.088 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 19:37:42.088 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:37:42.128 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:42.128 -07 000000512 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:37:42.138 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:37:42.138 -07 000000608 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:42.138 -07 000000608 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 19:37:42.138 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.172 mm/sec
17-03-17 19:37:42.458 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.988112,
17-03-17 19:37:43.088 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:43.088 -07 000000551 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:37:43.098 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:43.098 -07 000000608 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:43.118 -07 000000608 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:37:43.118 -07 000000608 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:37:43.118 -07 000000608 INF: Y Motor: Moved to 67.3726 after 1435 ms (table move)
17-03-17 19:37:43.118 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176214 mm (DAC = 38494)
17-03-17 19:37:43.118 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:43.118 -07 000000551 INF: FPGA: Recv ZSGSRD 36717
17-03-17 19:37:43.128 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:37:43.128 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:43.128 -07 000000623 INF: FPGA: Recv ZSGSRD 36716
17-03-17 19:37:43.138 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:43.138 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:43.138 -07 000000482 INF: FPGA: Recv ZSGSRD 36721
17-03-17 19:37:43.148 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:43.148 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:43.148 -07 000000551 INF: FPGA: Recv ZSGSRD 36723
17-03-17 19:37:43.158 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:43.158 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:43.158 -07 000000475 INF: FPGA: Recv ZSGSRD 36722
17-03-17 19:37:43.168 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:43.168 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:43.168 -07 000000486 INF: FPGA: Recv ZSGSRD 36722
17-03-17 19:37:43.178 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:43.178 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:43.178 -07 000000482 INF: FPGA: Recv ZSGSRD 36722
17-03-17 19:37:43.188 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:43.188 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:43.188 -07 000000462 INF: FPGA: Recv ZSGSRD 36714
17-03-17 19:37:43.198 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:43.198 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:43.198 -07 000000475 INF: FPGA: Recv ZSGSRD 36717
17-03-17 19:37:43.208 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:43.208 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:43.208 -07 000000501 INF: FPGA: Recv ZSGSRD 36723
17-03-17 19:37:43.218 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:43.218 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:43.218 -07 000000486 INF: FPGA: Recv ZPIEZORD 33016
17-03-17 19:37:43.228 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:43.228 -07 000000626 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.874 V. Piezo Error = -8.2 V.
17-03-17 19:37:43.228 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36720 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36722 (-175.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36714 (-175.3 uncal um), Max = 36723 (-175.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:37:43.228 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36720, posNoise = 3, negNoise = 6
17-03-17 19:37:43.228 -07 000000626 INF: Z Motor: After move to -0.176214, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:43.228 -07 000000626 INF: Z Motor: Settle wait time = 1439 ms, measure time = 104 ms (allowed 150 ms), total time = 1543 ms
17-03-17 19:37:43.228 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:37:43.278 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1729 ms
17-03-17 19:37:43.278 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:37:43.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:43.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:43.278 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:43.278 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:43.278 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:37:43.278 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:43.278 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:43.278 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:37:43.288 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:37:43.288 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:37:43.298 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:37:43.298 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:37:43.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:37:43.348 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:37:43.548 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:37:43.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:37:43.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:37:43.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1055395888, 0x0, 559484976) start.
17-03-17 19:37:43.588 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:37:43.588 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 19:37:43.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 19:37:43.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1055395888, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:37:43.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:43.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:37:43.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:37:43.688 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:43.688 -07 000000623 INF: Autofocus start
17-03-17 19:37:43.688 -07 000000623 INF: MeasureProfile start
17-03-17 19:37:43.688 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:43.698 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:37:43.698 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:37:43.698 -07 000000623 INF: MeasureProfile done
17-03-17 19:37:43.698 -07 000000623 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:37:43.698 -07 000000623 INF: Autofocus finished
17-03-17 19:37:43.898 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:37:43.898 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 204 ms overall
17-03-17 19:37:43.908 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.176220421856597. ----------
17-03-17 19:37:43.908 -07 000000610 INF: Cycle	28	Tile	10	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:37:43.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37027, sync = True, waitForSettling = True)
17-03-17 19:37:43.908 -07 000000610 INF: Z Motor: Moving to -0.169499 mm, started at -0.176220 mm, distance = 6.72 um
17-03-17 19:37:43.908 -07 000000610 INF: FPGA: Xmit ZDACW 37027\n [Z Motor]
17-03-17 19:37:43.908 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:37:43.918 -07 000000610 INF: FPGA: 'ZDACW 37027' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:37:43.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:43.918 -07 000000623 INF: FPGA: Recv ZDACR 37027
17-03-17 19:37:43.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:43.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:37:44.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:44.078 -07 000000547 INF: FPGA: Recv ZSGSRD 35670
17-03-17 19:37:44.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:44.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:44.088 -07 000000462 INF: FPGA: Recv ZSGSRD 35677
17-03-17 19:37:44.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:44.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:44.098 -07 000000608 INF: FPGA: Recv ZSGSRD 35677
17-03-17 19:37:44.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:44.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:44.108 -07 000000462 INF: FPGA: Recv ZSGSRD 35677
17-03-17 19:37:44.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:44.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:44.118 -07 000000551 INF: FPGA: Recv ZSGSRD 35670
17-03-17 19:37:44.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:44.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:44.128 -07 000000623 INF: FPGA: Recv ZSGSRD 35679
17-03-17 19:37:44.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:44.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:44.138 -07 000000547 INF: FPGA: Recv ZSGSRD 35680
17-03-17 19:37:44.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:44.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:44.148 -07 000000551 INF: FPGA: Recv ZSGSRD 35678
17-03-17 19:37:44.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:44.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:44.158 -07 000000551 INF: FPGA: Recv ZSGSRD 35673
17-03-17 19:37:44.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:44.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:44.168 -07 000000608 INF: FPGA: Recv ZSGSRD 35677
17-03-17 19:37:44.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:44.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:44.178 -07 000000547 INF: FPGA: Recv ZPIEZORD 31653
17-03-17 19:37:44.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:44.188 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -8.9 V.
17-03-17 19:37:44.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35676 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35677 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35670 (-168.6 uncal um), Max = 35680 (-168.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:37:44.188 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35676, posNoise = 4, negNoise = 6
17-03-17 19:37:44.188 -07 000000610 INF: Z Motor: After move to -0.169499, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:44.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:37:44.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:44.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:44.188 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:44.188 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:44.188 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:37:44.188 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:37:44.188 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:37:44.188 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:44.198 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:37:44.198 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:37:44.198 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:44.198 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:37:44.198 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:37:44.198 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:37:44.198 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:37:44.198 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:37:44.208 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:37:44.208 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:37:44.208 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:37:44.208 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:37:44.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 37204 150\n [Camera]
17-03-17 19:37:44.408 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:37:44.818 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:37:44.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:37:44.818 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:44.818 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:37:44.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:37:44.818 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:44.828 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:44.828 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1074477272, 0x0, 391868352) start.
17-03-17 19:37:44.828 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:44.828 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1109899536, 0x0, 418435064) start.
17-03-17 19:37:45.008 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37204 788
17-03-17 19:37:45.158 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:37:45.208 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1074477272, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:37:45.208 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:37:45.208 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:45.208 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1109899536, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:37:45.208 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:37:45.208 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:45.208 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:45.208 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:37:45.208 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:45.218 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:37:45.348 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:37:45.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:37:45.358 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:45.358 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:37:45.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:37:45.358 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:45.358 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:45.358 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:37:45.488 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:45.488 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:37:45.548 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:37:45.548 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:37:45.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 37204 150' command took 2 ms to send, 1331 ms to get response, and 1334 ms overall
17-03-17 19:37:45.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:37:45.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.169513544380599. ------
17-03-17 19:37:45.548 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:45.548 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17582 mm
17-03-17 19:37:45.548 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:37:45.548 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:37:45.558 -07 000000623 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 19:37:45.558 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:45.558 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38407, sync = True, waitForSettling = False)
17-03-17 19:37:45.558 -07 000000593 INF: Z Motor: Moving to -0.175816 mm, started at -0.169514 mm, distance = -6.30 um
17-03-17 19:37:45.558 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:45.558 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:37:45.558 -07 000000431 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:37:45.568 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:45.568 -07 000000623 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:45.568 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:37:45.568 -07 000000623 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:37:45.568 -07 000000623 INF: Y Motor: Moving 1343 steps-21
17-03-17 19:37:45.578 -07 000000593 INF: FPGA: Xmit ZDACW 38407\n [Z Motor]
17-03-17 19:37:45.578 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:37:45.588 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:37:45.588 -07 000000593 INF: FPGA: 'ZDACW 38407' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:37:45.598 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:45.598 -07 000000486 INF: FPGA: Recv ZDACR 38407
17-03-17 19:37:45.608 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:37:45.608 -07 000000593 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 19:37:45.748 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:37:45.748 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:37:45.748 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:45.748 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:37:45.758 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:37:45.768 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:37:45.768 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 19:37:45.868 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:37:45.868 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:37:45.868 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:45.878 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:37:45.878 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-17 19:37:45.958 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 19:37:45.958 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 19:37:45.998 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:45.998 -07 000000486 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:37:46.008 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:37:46.008 -07 000000623 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:46.008 -07 000000623 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:37:46.008 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.143 mm/sec
17-03-17 19:37:46.708 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:37:46.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:37:46.958 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:46.958 -07 000000593 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:37:46.968 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:46.968 -07 000000623 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:46.978 -07 000000623 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:37:46.978 -07 000000623 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:37:46.978 -07 000000623 INF: Y Motor: Moved to 68.2056 after 1429 ms (table move)
17-03-17 19:37:46.988 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175816 mm (DAC = 38407)
17-03-17 19:37:46.988 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:46.988 -07 000000541 INF: FPGA: Recv ZSGSRD 36657
17-03-17 19:37:46.998 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:37:46.998 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:46.998 -07 000000482 INF: FPGA: Recv ZSGSRD 36656
17-03-17 19:37:47.008 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:47.008 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:47.008 -07 000000593 INF: FPGA: Recv ZSGSRD 36660
17-03-17 19:37:47.018 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:47.018 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:47.018 -07 000000541 INF: FPGA: Recv ZSGSRD 36646
17-03-17 19:37:47.028 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:47.028 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:47.028 -07 000000541 INF: FPGA: Recv ZSGSRD 36658
17-03-17 19:37:47.038 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:47.038 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:47.038 -07 000000541 INF: FPGA: Recv ZSGSRD 36662
17-03-17 19:37:47.048 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:47.048 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:47.048 -07 000000541 INF: FPGA: Recv ZSGSRD 36663
17-03-17 19:37:47.058 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:47.058 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:47.058 -07 000000623 INF: FPGA: Recv ZSGSRD 36651
17-03-17 19:37:47.068 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:47.068 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:47.068 -07 000000431 INF: FPGA: Recv ZSGSRD 36652
17-03-17 19:37:47.078 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:47.078 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:47.078 -07 000000431 INF: FPGA: Recv ZSGSRD 36658
17-03-17 19:37:47.088 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:47.088 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:47.088 -07 000000431 INF: FPGA: Recv ZPIEZORD 32973
17-03-17 19:37:47.098 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:47.098 -07 000000626 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.861 V. Piezo Error = -8.2 V.
17-03-17 19:37:47.098 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36656 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36658 (-174.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36646 (-174.9 uncal um), Max = 36663 (-175.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:37:47.098 -07 000000626 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36656, posNoise = 7, negNoise = 10
17-03-17 19:37:47.098 -07 000000626 INF: Z Motor: After move to -0.175816, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:47.098 -07 000000626 INF: Z Motor: Settle wait time = 1433 ms, measure time = 107 ms (allowed 150 ms), total time = 1540 ms
17-03-17 19:37:47.098 -07 000000626 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:37:47.148 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 19:37:47.148 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:37:47.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:47.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:47.148 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:47.148 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:47.148 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:37:47.148 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:47.148 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:47.148 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:37:47.158 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:37:47.158 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:37:47.158 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:37:47.158 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:37:47.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:37:47.208 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:37:47.408 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:37:47.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:37:47.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:37:47.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1055395888, 0x0, 559484976) start.
17-03-17 19:37:47.448 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:37:47.448 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 19:37:47.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 19:37:47.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1055395888, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:37:47.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:47.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:37:47.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:37:47.548 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:47.548 -07 000000475 INF: Autofocus start
17-03-17 19:37:47.548 -07 000000475 INF: MeasureProfile start
17-03-17 19:37:47.548 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:47.558 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:37:47.558 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:37:47.558 -07 000000475 INF: MeasureProfile done
17-03-17 19:37:47.558 -07 000000475 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:37:47.558 -07 000000475 INF: Autofocus finished
17-03-17 19:37:47.758 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:37:47.758 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:37:47.758 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.175809272279525. ----------
17-03-17 19:37:47.758 -07 000000610 INF: Cycle	28	Tile	11	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:37:47.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36922, sync = True, waitForSettling = True)
17-03-17 19:37:47.768 -07 000000610 INF: Z Motor: Moving to -0.169018 mm, started at -0.175809 mm, distance = 6.79 um
17-03-17 19:37:47.768 -07 000000610 INF: FPGA: Xmit ZDACW 36922\n [Z Motor]
17-03-17 19:37:47.768 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:37:47.778 -07 000000610 INF: FPGA: 'ZDACW 36922' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:37:47.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:47.778 -07 000000475 INF: FPGA: Recv ZDACR 36922
17-03-17 19:37:47.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:47.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:37:47.828 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.033041,
17-03-17 19:37:47.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:47.938 -07 000000486 INF: FPGA: Recv ZSGSRD 35603
17-03-17 19:37:47.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:47.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:47.948 -07 000000482 INF: FPGA: Recv ZSGSRD 35605
17-03-17 19:37:47.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:47.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:47.958 -07 000000623 INF: FPGA: Recv ZSGSRD 35604
17-03-17 19:37:47.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:47.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:47.968 -07 000000486 INF: FPGA: Recv ZSGSRD 35600
17-03-17 19:37:47.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:47.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:47.978 -07 000000482 INF: FPGA: Recv ZSGSRD 35599
17-03-17 19:37:47.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:47.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:47.988 -07 000000482 INF: FPGA: Recv ZSGSRD 35602
17-03-17 19:37:47.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:47.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:47.998 -07 000000475 INF: FPGA: Recv ZSGSRD 35604
17-03-17 19:37:48.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:48.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:48.008 -07 000000547 INF: FPGA: Recv ZSGSRD 35597
17-03-17 19:37:48.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:48.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:48.018 -07 000000547 INF: FPGA: Recv ZSGSRD 35595
17-03-17 19:37:48.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:48.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:48.028 -07 000000623 INF: FPGA: Recv ZSGSRD 35604
17-03-17 19:37:48.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:37:48.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:48.038 -07 000000486 INF: FPGA: Recv ZPIEZORD 31515
17-03-17 19:37:48.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:48.048 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.634 V. Piezo Error = -9.0 V.
17-03-17 19:37:48.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35601 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35602 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35595 (-168.1 uncal um), Max = 35605 (-168.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:37:48.048 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35601, posNoise = 4, negNoise = 6
17-03-17 19:37:48.048 -07 000000610 INF: Z Motor: After move to -0.169018, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:48.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:37:48.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:48.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:48.048 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:48.048 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:48.048 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:37:48.048 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:48.048 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:37:48.048 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:37:48.048 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:48.048 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:37:48.048 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:37:48.048 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:37:48.058 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:37:48.058 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:37:48.058 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:37:48.058 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:37:48.068 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:37:48.068 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:37:48.068 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:37:48.068 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:37:48.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 37099 150\n [Camera]
17-03-17 19:37:48.268 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:37:48.668 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:37:48.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:37:48.668 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:48.678 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:48.678 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1074477272, 0x0, 391868352) start.
17-03-17 19:37:48.678 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:37:48.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:37:48.678 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:48.678 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:48.678 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1109899536, 0x0, 418435064) start.
17-03-17 19:37:48.868 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37099 788
17-03-17 19:37:49.018 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:37:49.068 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1074477272, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:37:49.068 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:37:49.068 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:49.068 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1109899536, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:37:49.068 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:37:49.068 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:49.068 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:37:49.068 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:37:49.068 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:37:49.078 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:37:49.208 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:37:49.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:37:49.208 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:49.208 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:49.208 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1145321800, 0x0, 391868352) start.
17-03-17 19:37:49.208 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:37:49.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:37:49.208 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:49.208 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:49.208 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 19:37:49.398 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:37:49.408 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:37:49.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 37099 150' command took 4 ms to send, 1320 ms to get response, and 1334 ms overall
17-03-17 19:37:49.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:37:49.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.169031728469967. ------
17-03-17 19:37:49.408 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:49.408 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17570 mm
17-03-17 19:37:49.408 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:37:49.418 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:37:49.418 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38381, sync = True, waitForSettling = False)
17-03-17 19:37:49.418 -07 000000501 INF: Z Motor: Moving to -0.175697 mm, started at -0.169032 mm, distance = -6.67 um
17-03-17 19:37:49.418 -07 000000482 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 19:37:49.418 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:49.418 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 19:37:49.418 -07 000000501 INF: FPGA: Xmit ZDACW 38381\n [Z Motor]
17-03-17 19:37:49.418 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:37:49.428 -07 000000501 INF: FPGA: 'ZDACW 38381' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:49.428 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:37:49.438 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:49.438 -07 000000486 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:37:49.448 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:49.448 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:37:49.448 -07 000000482 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:49.448 -07 000000486 INF: FPGA: Recv ZDACR 38381
17-03-17 19:37:49.448 -07 000000482 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:37:49.448 -07 000000482 INF: Y Motor: Moving 1338 steps-14
17-03-17 19:37:49.458 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:37:49.458 -07 000000501 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 19:37:49.458 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:37:49.608 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1145321800, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 19:37:49.608 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:37:49.608 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:49.608 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 19:37:49.608 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:37:49.618 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:49.618 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:49.618 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 19:37:49.618 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 19:37:49.628 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:37:49.628 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:37:49.628 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 19:37:49.828 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 19:37:49.828 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 19:37:49.868 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:49.868 -07 000000501 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:37:49.878 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:37:49.878 -07 000000482 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:49.878 -07 000000482 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:37:49.878 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.837 mm, average velocity = 2.180 mm/sec
17-03-17 19:37:50.828 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:50.828 -07 000000431 INF: FPGA: Recv YRDPOS 141370
17-03-17 19:37:50.838 -07 000000482 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:50.838 -07 000000482 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:50.858 -07 000000482 INF: Y Motor: After move to 69.042610, error = -0.014290, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:37:50.858 -07 000000482 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:37:50.858 -07 000000482 INF: Y Motor: Moved to 69.0283 after 1441 ms (table move)
17-03-17 19:37:50.858 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175697 mm (DAC = 38381)
17-03-17 19:37:50.858 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:50.858 -07 000000475 INF: FPGA: Recv ZSGSRD 36639
17-03-17 19:37:50.868 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:37:50.868 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:50.868 -07 000000482 INF: FPGA: Recv ZSGSRD 36632
17-03-17 19:37:50.878 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:50.878 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:50.878 -07 000000482 INF: FPGA: Recv ZSGSRD 36641
17-03-17 19:37:50.888 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:50.888 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:50.888 -07 000000547 INF: FPGA: Recv ZSGSRD 36636
17-03-17 19:37:50.898 -07 000000623 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:50.898 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:50.898 -07 000000547 INF: FPGA: Recv ZSGSRD 36638
17-03-17 19:37:50.908 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:50.908 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:50.908 -07 000000431 INF: FPGA: Recv ZSGSRD 36652
17-03-17 19:37:50.918 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:50.918 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:50.918 -07 000000431 INF: FPGA: Recv ZSGSRD 36636
17-03-17 19:37:50.928 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:50.928 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:50.928 -07 000000431 INF: FPGA: Recv ZSGSRD 36634
17-03-17 19:37:50.938 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:50.938 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:50.938 -07 000000431 INF: FPGA: Recv ZSGSRD 36643
17-03-17 19:37:50.948 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:50.948 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:50.948 -07 000000431 INF: FPGA: Recv ZSGSRD 36632
17-03-17 19:37:50.958 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:50.958 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:50.958 -07 000000431 INF: FPGA: Recv ZPIEZORD 32918
17-03-17 19:37:50.968 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:50.968 -07 000000623 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.857 V. Piezo Error = -8.2 V.
17-03-17 19:37:50.968 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36638 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36637 (-174.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36632 (-174.8 uncal um), Max = 36652 (-174.9 uncal um), Pos Noise = 14 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:37:50.968 -07 000000623 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36638, posNoise = 14, negNoise = 6
17-03-17 19:37:50.968 -07 000000623 INF: Z Motor: After move to -0.175697, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:50.968 -07 000000623 INF: Z Motor: Settle wait time = 1444 ms, measure time = 106 ms (allowed 150 ms), total time = 1550 ms
17-03-17 19:37:50.968 -07 000000623 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:37:51.018 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 19:37:51.018 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:37:51.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:51.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:51.018 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:51.018 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:51.018 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:37:51.018 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:51.018 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:37:51.018 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:37:51.028 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:37:51.028 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:37:51.038 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:37:51.038 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:37:51.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:37:51.088 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:37:51.288 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:37:51.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:37:51.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:37:51.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369425112, 0x0, 559484976) start.
17-03-17 19:37:51.328 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:37:51.328 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 19:37:51.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 19:37:51.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369425112, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:37:51.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:51.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:37:51.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:37:51.428 -07 000000475 INF: Autofocus start
17-03-17 19:37:51.428 -07 000000475 INF: MeasureProfile start
17-03-17 19:37:51.428 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:51.428 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:51.438 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:37:51.438 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:37:51.438 -07 000000475 INF: MeasureProfile done
17-03-17 19:37:51.438 -07 000000475 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:37:51.438 -07 000000475 INF: Autofocus finished
17-03-17 19:37:51.638 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:37:51.638 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:37:51.638 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0283203125, Z-position -0.175693636460973. ----------
17-03-17 19:37:51.638 -07 000000610 INF: Cycle	28	Tile	12	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:37:51.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36878, sync = True, waitForSettling = True)
17-03-17 19:37:51.648 -07 000000610 INF: Z Motor: Moving to -0.168817 mm, started at -0.175694 mm, distance = 6.88 um
17-03-17 19:37:51.648 -07 000000610 INF: FPGA: Xmit ZDACW 36878\n [Z Motor]
17-03-17 19:37:51.648 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:37:51.658 -07 000000610 INF: FPGA: 'ZDACW 36878' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:37:51.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:51.658 -07 000000593 INF: FPGA: Recv ZDACR 36878
17-03-17 19:37:51.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:51.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:37:51.708 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:37:51.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:37:51.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:51.818 -07 000000482 INF: FPGA: Recv ZSGSRD 35566
17-03-17 19:37:51.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:51.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:51.828 -07 000000478 INF: FPGA: Recv ZSGSRD 35569
17-03-17 19:37:51.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:51.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:51.838 -07 000000512 INF: FPGA: Recv ZSGSRD 35566
17-03-17 19:37:51.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:51.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:51.848 -07 000000475 INF: FPGA: Recv ZSGSRD 35566
17-03-17 19:37:51.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:51.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:51.858 -07 000000593 INF: FPGA: Recv ZSGSRD 35572
17-03-17 19:37:51.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:51.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:51.868 -07 000000475 INF: FPGA: Recv ZSGSRD 35576
17-03-17 19:37:51.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:51.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:51.878 -07 000000475 INF: FPGA: Recv ZSGSRD 35570
17-03-17 19:37:51.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:51.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:51.888 -07 000000593 INF: FPGA: Recv ZSGSRD 35574
17-03-17 19:37:51.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:51.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:51.898 -07 000000478 INF: FPGA: Recv ZSGSRD 35572
17-03-17 19:37:51.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:51.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:51.908 -07 000000593 INF: FPGA: Recv ZSGSRD 35571
17-03-17 19:37:51.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:51.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:51.918 -07 000000478 INF: FPGA: Recv ZPIEZORD 31479
17-03-17 19:37:51.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:51.928 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.627 V. Piezo Error = -9.0 V.
17-03-17 19:37:51.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35570 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35570 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35566 (-167.9 uncal um), Max = 35576 (-168.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:37:51.928 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35570, posNoise = 6, negNoise = 4
17-03-17 19:37:51.928 -07 000000610 INF: Z Motor: After move to -0.168817, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:51.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:37:51.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:51.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:51.928 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:51.928 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:37:51.928 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:37:51.928 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:51.928 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:37:51.928 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:37:51.928 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:37:51.928 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:51.928 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:51.928 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:37:51.938 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:37:51.938 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:37:51.938 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:37:51.938 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:37:51.938 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:37:51.938 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:37:51.948 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:37:51.948 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:37:51.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 37055 150\n [Camera]
17-03-17 19:37:52.148 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:37:52.548 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:37:52.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:37:52.548 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:52.548 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:52.548 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2379695888, 0x0, 391868352) start.
17-03-17 19:37:52.548 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:37:52.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:37:52.558 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:52.558 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:52.558 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:37:52.738 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37055 788
17-03-17 19:37:52.888 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:37:52.928 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2379695888, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:37:52.928 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:37:52.928 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:52.928 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:37:52.928 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:37:52.928 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:52.928 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:37:52.938 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:37:52.938 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:37:52.938 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:37:53.088 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:37:53.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:37:53.088 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:53.208 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:37:53.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:37:53.218 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:53.218 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:53.218 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:37:53.218 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.031682,
17-03-17 19:37:53.218 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:53.218 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1072270952, 0x0, 418435064) start.
17-03-17 19:37:53.278 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:37:53.278 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:37:53.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 37055 150' command took 2 ms to send, 1325 ms to get response, and 1331 ms overall
17-03-17 19:37:53.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:37:53.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0283203125, Z-Position -0.168832577893572. ------
17-03-17 19:37:53.288 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:53.288 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17523 mm
17-03-17 19:37:53.288 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:37:53.288 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:53.288 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38279, sync = True, waitForSettling = False)
17-03-17 19:37:53.288 -07 000000486 INF: Z Motor: Moving to -0.175230 mm, started at -0.168833 mm, distance = -6.40 um
17-03-17 19:37:53.288 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:37:53.288 -07 000000608 INF: Y Motor: Moving to 69.8726 mm, started at 69.0283 mm, delta = 0.8443 mm
17-03-17 19:37:53.298 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:53.298 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:53.298 -07 000000547 INF: FPGA: Recv YRDPOS 141370
17-03-17 19:37:53.308 -07 000000486 INF: FPGA: Xmit ZDACW 38279\n [Z Motor]
17-03-17 19:37:53.308 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:37:53.308 -07 000000608 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:53.308 -07 000000608 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:37:53.308 -07 000000608 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:37:53.308 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:37:53.318 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:37:53.318 -07 000000486 INF: FPGA: 'ZDACW 38279' command took 3 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:37:53.328 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:37:53.338 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:53.338 -07 000000593 INF: FPGA: Recv ZDACR 38279
17-03-17 19:37:53.348 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:37:53.348 -07 000000486 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 19:37:53.518 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:37:53.518 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:37:53.598 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1072270952, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:37:53.598 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:37:53.598 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:53.598 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:37:53.598 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:37:53.598 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:53.608 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:37:53.608 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:37:53.608 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-17 19:37:53.618 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:37:53.698 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:37:53.698 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 395 ms overall
17-03-17 19:37:53.738 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:53.738 -07 000000593 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:37:53.748 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:37:53.748 -07 000000608 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:53.748 -07 000000608 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:37:53.748 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.137 mm/sec
17-03-17 19:37:54.698 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:54.698 -07 000000482 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:37:54.708 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:54.708 -07 000000608 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:54.728 -07 000000608 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:37:54.728 -07 000000608 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:37:54.728 -07 000000608 INF: Y Motor: Moved to 69.8643 after 1436 ms (table move)
17-03-17 19:37:54.728 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175230 mm (DAC = 38279)
17-03-17 19:37:54.728 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:54.728 -07 000000608 INF: FPGA: Recv ZSGSRD 36564
17-03-17 19:37:54.738 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:37:54.738 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:54.738 -07 000000608 INF: FPGA: Recv ZSGSRD 36565
17-03-17 19:37:54.748 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:54.748 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:54.748 -07 000000475 INF: FPGA: Recv ZSGSRD 36565
17-03-17 19:37:54.758 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:54.758 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:54.758 -07 000000478 INF: FPGA: Recv ZSGSRD 36568
17-03-17 19:37:54.768 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:54.768 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:54.768 -07 000000478 INF: FPGA: Recv ZSGSRD 36579
17-03-17 19:37:54.778 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:54.778 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:54.778 -07 000000478 INF: FPGA: Recv ZSGSRD 36565
17-03-17 19:37:54.788 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:54.788 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:54.788 -07 000000478 INF: FPGA: Recv ZSGSRD 36565
17-03-17 19:37:54.798 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:54.798 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:54.798 -07 000000478 INF: FPGA: Recv ZSGSRD 36563
17-03-17 19:37:54.808 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:54.808 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:54.808 -07 000000478 INF: FPGA: Recv ZSGSRD 36564
17-03-17 19:37:54.818 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:54.818 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:54.818 -07 000000551 INF: FPGA: Recv ZSGSRD 36574
17-03-17 19:37:54.828 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:54.828 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:54.828 -07 000000431 INF: FPGA: Recv ZPIEZORD 32825
17-03-17 19:37:54.838 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:54.838 -07 000000541 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.841 V. Piezo Error = -8.3 V.
17-03-17 19:37:54.838 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36567 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36565 (-174.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36563 (-174.3 uncal um), Max = 36579 (-174.4 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:37:54.838 -07 000000541 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36567, posNoise = 12, negNoise = 4
17-03-17 19:37:54.838 -07 000000541 INF: Z Motor: After move to -0.175230, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:54.838 -07 000000541 INF: Z Motor: Settle wait time = 1440 ms, measure time = 106 ms (allowed 150 ms), total time = 1546 ms
17-03-17 19:37:54.838 -07 000000541 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:37:54.888 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 19:37:54.888 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:37:54.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:54.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:54.888 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:54.888 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:54.888 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:37:54.888 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:54.898 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:54.898 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:37:54.898 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:37:54.898 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:37:54.908 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:37:54.908 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:37:54.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:37:54.958 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:37:55.158 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:37:55.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:37:55.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:37:55.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1107693216, 0x0, 559484976) start.
17-03-17 19:37:55.198 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:37:55.198 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:37:55.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 19:37:55.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1107693216, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:37:55.278 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:55.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:37:55.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:37:55.298 -07 000000541 INF: Autofocus start
17-03-17 19:37:55.298 -07 000000541 INF: MeasureProfile start
17-03-17 19:37:55.298 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:55.308 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:55.308 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:37:55.308 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:37:55.308 -07 000000541 INF: MeasureProfile done
17-03-17 19:37:55.308 -07 000000541 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 19:37:55.308 -07 000000541 INF: Autofocus finished
17-03-17 19:37:55.508 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:37:55.508 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:37:55.518 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.175237517398908. ----------
17-03-17 19:37:55.518 -07 000000610 INF: Cycle	28	Tile	13	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:37:55.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36759, sync = True, waitForSettling = True)
17-03-17 19:37:55.518 -07 000000610 INF: Z Motor: Moving to -0.168272 mm, started at -0.175238 mm, distance = 6.97 um
17-03-17 19:37:55.518 -07 000000610 INF: FPGA: Xmit ZDACW 36759\n [Z Motor]
17-03-17 19:37:55.518 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:37:55.528 -07 000000610 INF: FPGA: 'ZDACW 36759' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:37:55.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:55.528 -07 000000593 INF: FPGA: Recv ZDACR 36759
17-03-17 19:37:55.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:55.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:37:55.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:55.688 -07 000000431 INF: FPGA: Recv ZSGSRD 35485
17-03-17 19:37:55.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:55.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:55.698 -07 000000551 INF: FPGA: Recv ZSGSRD 35483
17-03-17 19:37:55.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:55.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:55.708 -07 000000551 INF: FPGA: Recv ZSGSRD 35486
17-03-17 19:37:55.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:55.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:55.718 -07 000000593 INF: FPGA: Recv ZSGSRD 35483
17-03-17 19:37:55.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:55.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:55.728 -07 000000431 INF: FPGA: Recv ZSGSRD 35483
17-03-17 19:37:55.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:55.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:55.738 -07 000000551 INF: FPGA: Recv ZSGSRD 35489
17-03-17 19:37:55.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:55.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:55.748 -07 000000593 INF: FPGA: Recv ZSGSRD 35484
17-03-17 19:37:55.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:55.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:55.758 -07 000000431 INF: FPGA: Recv ZSGSRD 35484
17-03-17 19:37:55.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:55.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:55.768 -07 000000551 INF: FPGA: Recv ZSGSRD 35482
17-03-17 19:37:55.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:55.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:55.778 -07 000000551 INF: FPGA: Recv ZSGSRD 35489
17-03-17 19:37:55.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:55.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:55.788 -07 000000431 INF: FPGA: Recv ZPIEZORD 31384
17-03-17 19:37:55.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:55.798 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.609 V. Piezo Error = -9.0 V.
17-03-17 19:37:55.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35485 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35484 (-167.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35482 (-167.4 uncal um), Max = 35489 (-167.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:37:55.798 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35485, posNoise = 4, negNoise = 3
17-03-17 19:37:55.798 -07 000000610 INF: Z Motor: After move to -0.168272, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:55.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:37:55.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:55.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:55.798 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:55.798 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:37:55.798 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:55.798 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:55.798 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:55.798 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:37:55.798 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:37:55.798 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:37:55.798 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:37:55.798 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:37:55.808 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:37:55.808 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:37:55.808 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:37:55.808 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:37:55.808 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:37:55.808 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:37:55.818 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:37:55.818 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:37:55.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 36936 150\n [Camera]
17-03-17 19:37:56.018 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:37:56.418 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:37:56.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:37:56.428 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:37:56.428 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:56.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:37:56.428 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:56.438 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:56.438 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:56.438 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1126774600, 0x0, 391868352) start.
17-03-17 19:37:56.438 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:37:56.618 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36936 788
17-03-17 19:37:56.708 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:37:56.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:37:56.758 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:37:56.808 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 19:37:56.808 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 19:37:56.808 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:56.808 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1126774600, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 19:37:56.808 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 19:37:56.808 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:56.808 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:56.818 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:37:56.818 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:37:56.818 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:37:56.958 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:37:56.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:37:56.958 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:37:57.078 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:37:57.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:37:57.078 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:37:57.078 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:37:57.078 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:37:57.078 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:37:57.078 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:37:57.148 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:37:57.148 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:37:57.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 36936 150' command took 2 ms to send, 1326 ms to get response, and 1332 ms overall
17-03-17 19:37:57.148 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:37:57.148 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8642578125, Z-Position -0.168286519861523. ------
17-03-17 19:37:57.158 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:57.158 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17469 mm
17-03-17 19:37:57.158 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:37:57.158 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:57.158 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38160, sync = True, waitForSettling = False)
17-03-17 19:37:57.158 -07 000000593 INF: Z Motor: Moving to -0.174685 mm, started at -0.168287 mm, distance = -6.40 um
17-03-17 19:37:57.158 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:37:57.158 -07 000000501 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 19:37:57.168 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:37:57.168 -07 000000593 INF: FPGA: Xmit ZDACW 38160\n [Z Motor]
17-03-17 19:37:57.168 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:37:57.178 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:57.178 -07 000000593 INF: FPGA: 'ZDACW 38160' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:37:57.178 -07 000000551 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:37:57.188 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:37:57.188 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:37:57.188 -07 000000501 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:57.188 -07 000000501 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:37:57.188 -07 000000501 INF: Y Motor: Moving 1341 steps-18
17-03-17 19:37:57.198 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:57.198 -07 000000541 INF: FPGA: Recv ZDACR 38160
17-03-17 19:37:57.208 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:37:57.208 -07 000000593 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 19:37:57.208 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:37:57.388 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:37:57.388 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:37:57.478 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:37:57.478 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:37:57.478 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:57.478 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:37:57.478 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:37:57.478 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:57.478 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:37:57.478 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 19:37:57.478 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:37:57.488 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:37:57.578 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:37:57.578 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 19:37:57.618 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:57.618 -07 000000593 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:37:57.628 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:37:57.628 -07 000000501 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:57.628 -07 000000501 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:37:57.628 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.838 mm, average velocity = 2.117 mm/sec
17-03-17 19:37:58.588 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:37:58.588 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.028963,
17-03-17 19:37:58.588 -07 000000623 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:37:58.598 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 19:37:58.598 -07 000000501 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:37:58.618 -07 000000501 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:37:58.618 -07 000000501 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:37:58.618 -07 000000501 INF: Y Motor: Moved to 70.6895 after 1456 ms (table move)
17-03-17 19:37:58.618 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174685 mm (DAC = 38160)
17-03-17 19:37:58.638 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:58.638 -07 000000475 INF: FPGA: Recv ZSGSRD 36485
17-03-17 19:37:58.648 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:37:58.648 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:58.648 -07 000000478 INF: FPGA: Recv ZSGSRD 36487
17-03-17 19:37:58.658 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:58.668 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:58.668 -07 000000541 INF: FPGA: Recv ZSGSRD 36477
17-03-17 19:37:58.678 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:37:58.678 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:58.678 -07 000000541 INF: FPGA: Recv ZSGSRD 36483
17-03-17 19:37:58.688 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:58.688 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:58.688 -07 000000608 INF: FPGA: Recv ZSGSRD 36479
17-03-17 19:37:58.698 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:58.698 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:58.698 -07 000000593 INF: FPGA: Recv ZSGSRD 36480
17-03-17 19:37:58.708 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:58.708 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:58.708 -07 000000593 INF: FPGA: Recv ZSGSRD 36482
17-03-17 19:37:58.718 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:58.718 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:58.718 -07 000000608 INF: FPGA: Recv ZSGSRD 36484
17-03-17 19:37:58.728 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:58.728 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:58.728 -07 000000623 INF: FPGA: Recv ZSGSRD 36487
17-03-17 19:37:58.738 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:58.738 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:58.738 -07 000000608 INF: FPGA: Recv ZSGSRD 36484
17-03-17 19:37:58.748 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:58.748 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:58.748 -07 000000608 INF: FPGA: Recv ZPIEZORD 32728
17-03-17 19:37:58.758 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:58.758 -07 000000512 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.823 V. Piezo Error = -8.3 V.
17-03-17 19:37:58.758 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36483 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36484 (-173.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36477 (-173.8 uncal um), Max = 36487 (-173.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:37:58.758 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36483, posNoise = 4, negNoise = 6
17-03-17 19:37:58.758 -07 000000512 INF: Z Motor: After move to -0.174685, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:58.758 -07 000000512 INF: Z Motor: Settle wait time = 1461 ms, measure time = 133 ms (allowed 150 ms), total time = 1594 ms
17-03-17 19:37:58.758 -07 000000512 INF: Z Motor: Waiting extra 17 ms after reading position to reach expected total of 150 ms
17-03-17 19:37:58.778 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-17 19:37:58.778 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:37:58.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:58.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:58.778 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:58.778 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:37:58.778 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:58.778 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:58.778 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:58.778 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:37:58.788 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:37:58.788 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:37:58.798 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:37:58.798 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:37:58.798 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:37:58.848 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:37:59.048 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:37:59.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:37:59.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:37:59.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1107693216, 0x0, 559484976) start.
17-03-17 19:37:59.088 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:37:59.088 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 19:37:59.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 286 ms overall
17-03-17 19:37:59.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1107693216, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 19:37:59.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:37:59.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:37:59.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 19:37:59.188 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:37:59.188 -07 000000541 INF: Autofocus start
17-03-17 19:37:59.188 -07 000000541 INF: MeasureProfile start
17-03-17 19:37:59.188 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:37:59.198 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:37:59.198 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:37:59.198 -07 000000541 INF: MeasureProfile done
17-03-17 19:37:59.198 -07 000000541 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:37:59.198 -07 000000541 INF: Autofocus finished
17-03-17 19:37:59.398 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:37:59.398 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:37:59.398 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.174697883579. ----------
17-03-17 19:37:59.398 -07 000000610 INF: Cycle	28	Tile	14	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:37:59.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36693, sync = True, waitForSettling = True)
17-03-17 19:37:59.408 -07 000000610 INF: Z Motor: Moving to -0.167970 mm, started at -0.174698 mm, distance = 6.73 um
17-03-17 19:37:59.408 -07 000000610 INF: FPGA: Xmit ZDACW 36693\n [Z Motor]
17-03-17 19:37:59.408 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:37:59.418 -07 000000610 INF: FPGA: 'ZDACW 36693' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:37:59.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:37:59.418 -07 000000512 INF: FPGA: Recv ZDACR 36693
17-03-17 19:37:59.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:59.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:37:59.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:59.578 -07 000000608 INF: FPGA: Recv ZSGSRD 35440
17-03-17 19:37:59.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:37:59.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:59.588 -07 000000608 INF: FPGA: Recv ZSGSRD 35438
17-03-17 19:37:59.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:59.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:59.598 -07 000000512 INF: FPGA: Recv ZSGSRD 35436
17-03-17 19:37:59.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:59.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:59.608 -07 000000512 INF: FPGA: Recv ZSGSRD 35436
17-03-17 19:37:59.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:59.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:59.618 -07 000000512 INF: FPGA: Recv ZSGSRD 35437
17-03-17 19:37:59.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:59.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:59.628 -07 000000608 INF: FPGA: Recv ZSGSRD 35433
17-03-17 19:37:59.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:59.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:59.638 -07 000000512 INF: FPGA: Recv ZSGSRD 35437
17-03-17 19:37:59.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:59.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:59.648 -07 000000608 INF: FPGA: Recv ZSGSRD 35436
17-03-17 19:37:59.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:59.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:59.658 -07 000000512 INF: FPGA: Recv ZSGSRD 35444
17-03-17 19:37:59.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:59.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:37:59.668 -07 000000608 INF: FPGA: Recv ZSGSRD 35437
17-03-17 19:37:59.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:59.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:37:59.678 -07 000000608 INF: FPGA: Recv ZPIEZORD 31329
17-03-17 19:37:59.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:37:59.688 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.599 V. Piezo Error = -9.1 V.
17-03-17 19:37:59.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35437 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35437 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35433 (-167.1 uncal um), Max = 35444 (-167.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:37:59.688 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35437, posNoise = 7, negNoise = 4
17-03-17 19:37:59.688 -07 000000610 INF: Z Motor: After move to -0.167970, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:37:59.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:37:59.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:37:59.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:37:59.688 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:37:59.688 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:37:59.688 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:37:59.688 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:37:59.688 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:37:59.688 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:37:59.688 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:37:59.688 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:37:59.688 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:37:59.688 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:37:59.698 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:37:59.698 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:37:59.698 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:37:59.698 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:37:59.708 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:37:59.708 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:37:59.708 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:37:59.708 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:37:59.708 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 36870 150\n [Camera]
17-03-17 19:37:59.908 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:38:00.308 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:38:00.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:38:00.308 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:00.308 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:38:00.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:38:00.308 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:00.308 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1122369296, 0x0, 391868352) start.
17-03-17 19:38:00.318 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:00.318 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:00.318 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:38:00.508 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36870 788
17-03-17 19:38:00.648 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:38:00.688 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 19:38:00.688 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 19:38:00.688 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:00.688 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:00.688 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1122369296, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:38:00.688 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:38:00.688 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:00.698 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:38:00.698 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:00.698 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:38:00.848 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:38:00.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:38:00.848 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:00.958 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:00.958 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:38:00.958 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:38:00.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:38:00.968 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:00.968 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:00.968 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:38:01.038 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:38:01.038 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:38:01.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 36870 150' command took 2 ms to send, 1325 ms to get response, and 1332 ms overall
17-03-17 19:38:01.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:38:01.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.689453125, Z-Position -0.167978157678718. ------
17-03-17 19:38:01.048 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:01.048 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17463 mm
17-03-17 19:38:01.048 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:38:01.048 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:01.048 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:38:01.048 -07 000000541 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-17 19:38:01.048 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38148, sync = True, waitForSettling = False)
17-03-17 19:38:01.048 -07 000000478 INF: Z Motor: Moving to -0.174630 mm, started at -0.167978 mm, distance = -6.65 um
17-03-17 19:38:01.058 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:01.058 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:01.058 -07 000000462 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:38:01.068 -07 000000478 INF: FPGA: Xmit ZDACW 38148\n [Z Motor]
17-03-17 19:38:01.068 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:38:01.068 -07 000000541 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:01.068 -07 000000541 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:38:01.068 -07 000000541 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:38:01.068 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:38:01.078 -07 000000478 INF: FPGA: 'ZDACW 38148' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:38:01.078 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:38:01.088 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:38:01.098 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:01.098 -07 000000593 INF: FPGA: Recv ZDACR 38148
17-03-17 19:38:01.108 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:38:01.108 -07 000000478 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 19:38:01.278 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:38:01.278 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 19:38:01.358 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:38:01.358 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:38:01.358 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:01.358 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:38:01.358 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:38:01.358 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:01.368 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:01.368 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:38:01.368 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 19:38:01.378 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:38:01.458 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 19:38:01.458 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 19:38:01.498 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:01.498 -07 000000462 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:38:01.508 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:38:01.508 -07 000000541 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:01.508 -07 000000541 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:38:01.508 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 19:38:01.708 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:38:01.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:38:02.458 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:02.458 -07 000000486 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:38:02.468 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:02.468 -07 000000541 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:02.488 -07 000000541 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:38:02.488 -07 000000541 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:38:02.488 -07 000000541 INF: Y Motor: Moved to 71.5200 after 1437 ms (table move)
17-03-17 19:38:02.488 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174630 mm (DAC = 38148)
17-03-17 19:38:02.488 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:02.488 -07 000000486 INF: FPGA: Recv ZSGSRD 36478
17-03-17 19:38:02.498 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:38:02.498 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:02.498 -07 000000486 INF: FPGA: Recv ZSGSRD 36468
17-03-17 19:38:02.508 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:02.508 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:02.508 -07 000000486 INF: FPGA: Recv ZSGSRD 36471
17-03-17 19:38:02.518 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:02.518 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:02.518 -07 000000486 INF: FPGA: Recv ZSGSRD 36469
17-03-17 19:38:02.528 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:02.528 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:02.528 -07 000000608 INF: FPGA: Recv ZSGSRD 36476
17-03-17 19:38:02.538 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:02.538 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:02.538 -07 000000486 INF: FPGA: Recv ZSGSRD 36481
17-03-17 19:38:02.548 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:02.548 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:02.548 -07 000000486 INF: FPGA: Recv ZSGSRD 36474
17-03-17 19:38:02.558 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:02.558 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:02.558 -07 000000486 INF: FPGA: Recv ZSGSRD 36476
17-03-17 19:38:02.568 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:02.568 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:02.568 -07 000000486 INF: FPGA: Recv ZSGSRD 36470
17-03-17 19:38:02.578 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:02.578 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:02.578 -07 000000486 INF: FPGA: Recv ZSGSRD 36469
17-03-17 19:38:02.588 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:02.588 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:02.588 -07 000000486 INF: FPGA: Recv ZPIEZORD 32732
17-03-17 19:38:02.598 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:02.598 -07 000000482 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.821 V. Piezo Error = -8.3 V.
17-03-17 19:38:02.598 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36473 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36472 (-173.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36468 (-173.7 uncal um), Max = 36481 (-173.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:38:02.598 -07 000000482 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36473, posNoise = 8, negNoise = 5
17-03-17 19:38:02.598 -07 000000482 INF: Z Motor: After move to -0.174630, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:02.598 -07 000000482 INF: Z Motor: Settle wait time = 1441 ms, measure time = 105 ms (allowed 150 ms), total time = 1546 ms
17-03-17 19:38:02.598 -07 000000482 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:38:02.648 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 19:38:02.648 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:38:02.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:02.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:02.648 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:02.648 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:02.648 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:38:02.648 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:02.648 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:02.648 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:38:02.658 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:38:02.658 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:38:02.658 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:38:02.658 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:38:02.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:38:02.708 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:38:02.908 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:38:02.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:38:02.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:38:02.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:38:02.948 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:38:02.948 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 19:38:02.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:38:03.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 19:38:03.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:03.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:38:03.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:38:03.148 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:03.148 -07 000000478 INF: Autofocus start
17-03-17 19:38:03.148 -07 000000478 INF: MeasureProfile start
17-03-17 19:38:03.158 -07 000000478 INF: MeasureProfile done
17-03-17 19:38:03.158 -07 000000478 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:38:03.158 -07 000000478 INF: Autofocus finished
17-03-17 19:38:03.158 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:03.158 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 14 ms overall
17-03-17 19:38:03.168 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:38:03.368 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:38:03.368 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 19:38:03.368 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.174633641457582. ----------
17-03-17 19:38:03.368 -07 000000610 INF: Cycle	28	Tile	15	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:38:03.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36663, sync = True, waitForSettling = True)
17-03-17 19:38:03.378 -07 000000610 INF: Z Motor: Moving to -0.167832 mm, started at -0.174634 mm, distance = 6.80 um
17-03-17 19:38:03.378 -07 000000610 INF: FPGA: Xmit ZDACW 36663\n [Z Motor]
17-03-17 19:38:03.378 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:38:03.388 -07 000000610 INF: FPGA: 'ZDACW 36663' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:38:03.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:03.388 -07 000000478 INF: FPGA: Recv ZDACR 36663
17-03-17 19:38:03.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:03.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:38:03.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:03.548 -07 000000623 INF: FPGA: Recv ZSGSRD 35416
17-03-17 19:38:03.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:03.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:03.558 -07 000000478 INF: FPGA: Recv ZSGSRD 35416
17-03-17 19:38:03.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:03.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:03.568 -07 000000623 INF: FPGA: Recv ZSGSRD 35414
17-03-17 19:38:03.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:03.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:03.578 -07 000000478 INF: FPGA: Recv ZSGSRD 35416
17-03-17 19:38:03.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:03.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:03.588 -07 000000478 INF: FPGA: Recv ZSGSRD 35414
17-03-17 19:38:03.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:03.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:03.598 -07 000000478 INF: FPGA: Recv ZSGSRD 35418
17-03-17 19:38:03.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:03.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:03.608 -07 000000478 INF: FPGA: Recv ZSGSRD 35417
17-03-17 19:38:03.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:03.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:03.618 -07 000000478 INF: FPGA: Recv ZSGSRD 35417
17-03-17 19:38:03.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:03.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:03.628 -07 000000623 INF: FPGA: Recv ZSGSRD 35414
17-03-17 19:38:03.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:03.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:03.638 -07 000000478 INF: FPGA: Recv ZSGSRD 35415
17-03-17 19:38:03.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:03.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:03.648 -07 000000623 INF: FPGA: Recv ZPIEZORD 31337
17-03-17 19:38:03.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:03.658 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.594 V. Piezo Error = -9.0 V.
17-03-17 19:38:03.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35416 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35416 (-167.0 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35414 (-167.0 uncal um), Max = 35418 (-167.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 19:38:03.658 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35416, posNoise = 2, negNoise = 2
17-03-17 19:38:03.658 -07 000000610 INF: Z Motor: After move to -0.167832, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:03.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:38:03.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:03.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:03.658 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:03.658 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:03.658 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:38:03.658 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:03.658 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:38:03.658 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:38:03.658 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:03.658 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:38:03.668 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:38:03.668 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:38:03.668 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:38:03.668 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:38:03.668 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:38:03.668 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:38:03.678 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:38:03.678 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:38:03.678 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:38:03.678 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:38:03.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 36840 150\n [Camera]
17-03-17 19:38:03.878 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:38:03.988 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.003063,
17-03-17 19:38:04.288 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:38:04.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:38:04.288 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:04.288 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:04.288 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) start.
17-03-17 19:38:04.288 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:38:04.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:38:04.288 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:04.288 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:04.288 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) start.
17-03-17 19:38:04.478 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36840 788
17-03-17 19:38:04.628 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:38:04.668 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:38:04.668 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:38:04.668 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:04.668 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:38:04.668 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:38:04.668 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:04.668 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:38:04.668 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:38:04.678 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:38:04.678 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:38:04.818 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:38:04.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:38:04.818 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:04.938 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:38:04.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:38:04.938 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:04.938 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:04.938 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:38:04.938 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:04.938 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:38:05.008 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1324
17-03-17 19:38:05.008 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:38:05.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 36840 150' command took 2 ms to send, 1319 ms to get response, and 1332 ms overall
17-03-17 19:38:05.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:38:05.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52001953125, Z-Position -0.167843249223741. ------
17-03-17 19:38:05.018 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:05.018 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17374 mm
17-03-17 19:38:05.018 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:38:05.018 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:38:05.018 -07 000000551 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 19:38:05.018 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:05.018 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37954, sync = True, waitForSettling = False)
17-03-17 19:38:05.018 -07 000000512 INF: Z Motor: Moving to -0.173742 mm, started at -0.167843 mm, distance = -5.90 um
17-03-17 19:38:05.028 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:38:05.028 -07 000000512 INF: FPGA: Xmit ZDACW 37954\n [Z Motor]
17-03-17 19:38:05.028 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:38:05.038 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:05.038 -07 000000512 INF: FPGA: 'ZDACW 37954' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:38:05.038 -07 000000541 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:38:05.048 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:38:05.048 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:38:05.048 -07 000000551 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:05.048 -07 000000551 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:38:05.048 -07 000000551 INF: Y Motor: Moving 1348 steps-26
17-03-17 19:38:05.058 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:05.058 -07 000000623 INF: FPGA: Recv ZDACR 37954
17-03-17 19:38:05.068 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:38:05.068 -07 000000512 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 19:38:05.068 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:38:05.248 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:38:05.248 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:38:05.318 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:38:05.318 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:38:05.318 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:05.328 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:38:05.328 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:38:05.328 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:05.328 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:05.328 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:38:05.328 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-17 19:38:05.328 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:38:05.438 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 19:38:05.438 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 19:38:05.478 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:05.478 -07 000000541 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:38:05.488 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:38:05.488 -07 000000551 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:05.488 -07 000000551 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:38:05.488 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 19:38:06.438 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:06.438 -07 000000547 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:38:06.448 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:06.448 -07 000000551 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:06.468 -07 000000551 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:38:06.468 -07 000000551 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:38:06.468 -07 000000551 INF: Y Motor: Moved to 72.3501 after 1443 ms (table move)
17-03-17 19:38:06.468 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173742 mm (DAC = 37954)
17-03-17 19:38:06.468 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:06.468 -07 000000501 INF: FPGA: Recv ZSGSRD 36334
17-03-17 19:38:06.478 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:38:06.478 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:06.478 -07 000000551 INF: FPGA: Recv ZSGSRD 36334
17-03-17 19:38:06.488 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:06.488 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:06.488 -07 000000626 INF: FPGA: Recv ZSGSRD 36332
17-03-17 19:38:06.498 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:06.498 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:06.498 -07 000000541 INF: FPGA: Recv ZSGSRD 36336
17-03-17 19:38:06.508 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:06.508 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:06.508 -07 000000541 INF: FPGA: Recv ZSGSRD 36339
17-03-17 19:38:06.518 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:06.518 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:06.518 -07 000000541 INF: FPGA: Recv ZSGSRD 36339
17-03-17 19:38:06.528 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:06.528 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:06.528 -07 000000541 INF: FPGA: Recv ZSGSRD 36340
17-03-17 19:38:06.538 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:06.538 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:06.538 -07 000000541 INF: FPGA: Recv ZSGSRD 36326
17-03-17 19:38:06.548 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:06.548 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:06.548 -07 000000541 INF: FPGA: Recv ZSGSRD 36333
17-03-17 19:38:06.558 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:06.558 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:06.558 -07 000000541 INF: FPGA: Recv ZSGSRD 36334
17-03-17 19:38:06.568 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:06.568 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:06.568 -07 000000541 INF: FPGA: Recv ZPIEZORD 32568
17-03-17 19:38:06.578 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:06.578 -07 000000478 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.791 V. Piezo Error = -8.3 V.
17-03-17 19:38:06.578 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36335 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36334 (-172.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36326 (-172.8 uncal um), Max = 36340 (-172.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:38:06.578 -07 000000478 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36335, posNoise = 5, negNoise = 9
17-03-17 19:38:06.578 -07 000000478 INF: Z Motor: After move to -0.173742, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:06.578 -07 000000478 INF: Z Motor: Settle wait time = 1447 ms, measure time = 105 ms (allowed 150 ms), total time = 1552 ms
17-03-17 19:38:06.578 -07 000000478 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:38:06.628 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 19:38:06.628 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:38:06.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:06.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:06.628 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:06.628 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:06.628 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:38:06.628 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:06.638 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:06.638 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:38:06.638 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:38:06.638 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:38:06.648 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:38:06.648 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:38:06.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:38:06.698 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:38:06.708 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:38:06.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:38:06.898 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:38:06.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:38:06.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:38:06.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:38:06.938 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:38:06.938 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:38:06.938 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 19:38:07.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:38:07.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:07.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:38:07.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 19:38:07.138 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:07.138 -07 000000541 INF: Autofocus start
17-03-17 19:38:07.138 -07 000000541 INF: MeasureProfile start
17-03-17 19:38:07.148 -07 000000541 INF: MeasureProfile done
17-03-17 19:38:07.148 -07 000000541 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:38:07.148 -07 000000541 INF: Autofocus finished
17-03-17 19:38:07.158 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:07.158 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 11 ms to get response, and 16 ms overall
17-03-17 19:38:07.158 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:38:07.358 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:38:07.358 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:38:07.368 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.173747100182019. ----------
17-03-17 19:38:07.368 -07 000000610 INF: Cycle	28	Tile	16	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:38:07.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36469, sync = True, waitForSettling = True)
17-03-17 19:38:07.368 -07 000000610 INF: Z Motor: Moving to -0.166944 mm, started at -0.173747 mm, distance = 6.80 um
17-03-17 19:38:07.368 -07 000000610 INF: FPGA: Xmit ZDACW 36469\n [Z Motor]
17-03-17 19:38:07.368 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:38:07.378 -07 000000610 INF: FPGA: 'ZDACW 36469' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:38:07.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:07.378 -07 000000541 INF: FPGA: Recv ZDACR 36469
17-03-17 19:38:07.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:07.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:38:07.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:07.538 -07 000000478 INF: FPGA: Recv ZSGSRD 35275
17-03-17 19:38:07.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:07.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:07.548 -07 000000478 INF: FPGA: Recv ZSGSRD 35279
17-03-17 19:38:07.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:07.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:07.558 -07 000000478 INF: FPGA: Recv ZSGSRD 35271
17-03-17 19:38:07.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:07.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:07.568 -07 000000478 INF: FPGA: Recv ZSGSRD 35275
17-03-17 19:38:07.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:07.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:07.578 -07 000000431 INF: FPGA: Recv ZSGSRD 35282
17-03-17 19:38:07.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:07.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:07.588 -07 000000541 INF: FPGA: Recv ZSGSRD 35282
17-03-17 19:38:07.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:07.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:07.598 -07 000000541 INF: FPGA: Recv ZSGSRD 35278
17-03-17 19:38:07.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:07.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:07.608 -07 000000482 INF: FPGA: Recv ZSGSRD 35271
17-03-17 19:38:07.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:07.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:07.618 -07 000000431 INF: FPGA: Recv ZSGSRD 35281
17-03-17 19:38:07.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:07.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:07.628 -07 000000478 INF: FPGA: Recv ZSGSRD 35273
17-03-17 19:38:07.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:07.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:07.638 -07 000000541 INF: FPGA: Recv ZPIEZORD 31158
17-03-17 19:38:07.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:07.648 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.565 V. Piezo Error = -9.1 V.
17-03-17 19:38:07.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35277 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35276 (-166.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35271 (-166.0 uncal um), Max = 35282 (-166.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:38:07.648 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35277, posNoise = 5, negNoise = 6
17-03-17 19:38:07.648 -07 000000610 INF: Z Motor: After move to -0.166944, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:07.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:38:07.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:07.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:07.648 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:07.648 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:38:07.648 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:07.648 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:38:07.648 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:38:07.648 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:07.648 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:38:07.648 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:38:07.648 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:38:07.648 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:38:07.658 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:38:07.658 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:38:07.658 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:38:07.658 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:38:07.668 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:38:07.668 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:38:07.668 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:38:07.668 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:38:07.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 36646 150\n [Camera]
17-03-17 19:38:07.868 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:38:08.268 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:38:08.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:38:08.268 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:08.268 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:08.268 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) start.
17-03-17 19:38:08.278 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:38:08.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:38:08.278 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:08.278 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:08.278 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) start.
17-03-17 19:38:08.468 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36646 788
17-03-17 19:38:08.608 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:38:08.658 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:38:08.658 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:38:08.658 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:08.658 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:38:08.658 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:38:08.658 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:08.658 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:38:08.658 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:38:08.658 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:38:08.668 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:38:08.808 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:38:08.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:38:08.808 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:08.808 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:38:08.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:38:08.808 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:08.818 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:08.818 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:38:08.818 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:08.818 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:38:08.998 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1324
17-03-17 19:38:08.998 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:38:08.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 36646 150' command took 2 ms to send, 1326 ms to get response, and 1331 ms overall
17-03-17 19:38:08.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:38:08.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.166950283736036. ------
17-03-17 19:38:09.008 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17354 mm
17-03-17 19:38:09.008 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:38:09.008 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:09.008 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:09.008 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:38:09.008 -07 000000462 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 19:38:09.008 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 37910, sync = True, waitForSettling = False)
17-03-17 19:38:09.008 -07 000000482 INF: Z Motor: Moving to -0.173541 mm, started at -0.166950 mm, distance = -6.59 um
17-03-17 19:38:09.018 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:38:09.018 -07 000000482 INF: FPGA: Xmit ZDACW 37910\n [Z Motor]
17-03-17 19:38:09.018 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:38:09.028 -07 000000482 INF: FPGA: 'ZDACW 37910' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:38:09.038 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:09.038 -07 000000431 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:38:09.048 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:38:09.048 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 19:38:09.048 -07 000000462 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:09.048 -07 000000462 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:38:09.048 -07 000000462 INF: Y Motor: Moving 1348 steps-26
17-03-17 19:38:09.058 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:09.058 -07 000000623 INF: FPGA: Recv ZDACR 37910
17-03-17 19:38:09.068 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:38:09.068 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 19:38:09.068 -07 000000482 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 19:38:09.188 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:38:09.188 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:38:09.188 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:09.198 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:09.198 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:38:09.198 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:38:09.198 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:09.198 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:09.198 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:38:09.198 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:38:09.248 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:38:09.258 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 203 ms to get response, and 242 ms overall
17-03-17 19:38:09.348 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.008536,
17-03-17 19:38:10.248 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 19:38:10.248 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1170 ms to get response, and 1200 ms overall
17-03-17 19:38:10.288 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:10.288 -07 000000623 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:38:10.298 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:38:10.298 -07 000000462 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:10.298 -07 000000462 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 19:38:10.298 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1200 ms, distance = 0.843 mm, average velocity = 0.702 mm/sec
17-03-17 19:38:11.248 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:11.248 -07 000000593 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:38:11.258 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:11.258 -07 000000462 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:11.278 -07 000000462 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:38:11.278 -07 000000462 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:38:11.278 -07 000000462 INF: Y Motor: Moved to 73.1768 after 2265 ms (table move)
17-03-17 19:38:11.278 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173541 mm (DAC = 37910)
17-03-17 19:38:11.278 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:11.278 -07 000000475 INF: FPGA: Recv ZSGSRD 36309
17-03-17 19:38:11.288 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:38:11.288 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:11.288 -07 000000462 INF: FPGA: Recv ZSGSRD 36304
17-03-17 19:38:11.298 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:11.298 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:11.298 -07 000000475 INF: FPGA: Recv ZSGSRD 36309
17-03-17 19:38:11.308 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:11.308 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:11.308 -07 000000623 INF: FPGA: Recv ZSGSRD 36296
17-03-17 19:38:11.318 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:11.318 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:11.318 -07 000000475 INF: FPGA: Recv ZSGSRD 36302
17-03-17 19:38:11.328 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:11.328 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:11.328 -07 000000593 INF: FPGA: Recv ZSGSRD 36305
17-03-17 19:38:11.338 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:11.338 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:11.338 -07 000000478 INF: FPGA: Recv ZSGSRD 36310
17-03-17 19:38:11.348 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:11.348 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:11.348 -07 000000541 INF: FPGA: Recv ZSGSRD 36304
17-03-17 19:38:11.358 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:11.358 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:11.358 -07 000000623 INF: FPGA: Recv ZSGSRD 36299
17-03-17 19:38:11.368 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:11.368 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:11.368 -07 000000478 INF: FPGA: Recv ZSGSRD 36306
17-03-17 19:38:11.378 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:11.378 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:11.378 -07 000000623 INF: FPGA: Recv ZPIEZORD 32560
17-03-17 19:38:11.388 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:38:11.388 -07 000000608 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.785 V. Piezo Error = -8.3 V.
17-03-17 19:38:11.388 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36304 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36304 (-172.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36296 (-172.6 uncal um), Max = 36310 (-172.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:38:11.388 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36304, posNoise = 6, negNoise = 8
17-03-17 19:38:11.388 -07 000000608 INF: Z Motor: After move to -0.173541, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:11.388 -07 000000608 INF: Z Motor: Settle wait time = 2268 ms, measure time = 104 ms (allowed 150 ms), total time = 2372 ms
17-03-17 19:38:11.388 -07 000000608 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:38:11.438 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2427 ms
17-03-17 19:38:11.438 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:38:11.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:11.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:11.438 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:11.438 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:11.438 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:38:11.438 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:11.438 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:11.438 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:38:11.448 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:38:11.448 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:38:11.458 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:38:11.458 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:38:11.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:38:11.508 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:38:11.708 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:38:11.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:38:11.708 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:38:11.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:38:11.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:38:11.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 19:38:11.748 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:38:11.748 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 19:38:11.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 19:38:11.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 19:38:11.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:11.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:38:11.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 19:38:11.848 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:11.848 -07 000000478 INF: Autofocus start
17-03-17 19:38:11.848 -07 000000478 INF: MeasureProfile start
17-03-17 19:38:11.848 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:11.858 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:38:11.858 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:38:11.868 -07 000000478 INF: MeasureProfile done
17-03-17 19:38:11.868 -07 000000478 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:38:11.868 -07 000000478 INF: Autofocus finished
17-03-17 19:38:12.058 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:38:12.058 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:38:12.058 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.173547949605625. ----------
17-03-17 19:38:12.058 -07 000000610 INF: Cycle	28	Tile	17	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:38:12.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36407, sync = True, waitForSettling = True)
17-03-17 19:38:12.068 -07 000000610 INF: Z Motor: Moving to -0.166661 mm, started at -0.173548 mm, distance = 6.89 um
17-03-17 19:38:12.068 -07 000000610 INF: FPGA: Xmit ZDACW 36407\n [Z Motor]
17-03-17 19:38:12.068 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:38:12.078 -07 000000610 INF: FPGA: 'ZDACW 36407' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:38:12.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:12.078 -07 000000478 INF: FPGA: Recv ZDACR 36407
17-03-17 19:38:12.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:12.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:38:12.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:12.238 -07 000000541 INF: FPGA: Recv ZSGSRD 35232
17-03-17 19:38:12.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:12.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:12.248 -07 000000623 INF: FPGA: Recv ZSGSRD 35229
17-03-17 19:38:12.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:12.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:12.258 -07 000000478 INF: FPGA: Recv ZSGSRD 35233
17-03-17 19:38:12.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:12.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:12.268 -07 000000593 INF: FPGA: Recv ZSGSRD 35234
17-03-17 19:38:12.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:12.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:12.278 -07 000000478 INF: FPGA: Recv ZSGSRD 35230
17-03-17 19:38:12.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:12.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:12.288 -07 000000623 INF: FPGA: Recv ZSGSRD 35235
17-03-17 19:38:12.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:12.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:12.298 -07 000000541 INF: FPGA: Recv ZSGSRD 35236
17-03-17 19:38:12.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:12.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:12.308 -07 000000593 INF: FPGA: Recv ZSGSRD 35238
17-03-17 19:38:12.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:12.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:12.318 -07 000000482 INF: FPGA: Recv ZSGSRD 35229
17-03-17 19:38:12.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:12.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:12.328 -07 000000623 INF: FPGA: Recv ZSGSRD 35235
17-03-17 19:38:12.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:12.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:12.338 -07 000000541 INF: FPGA: Recv ZPIEZORD 31098
17-03-17 19:38:12.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:12.348 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.555 V. Piezo Error = -9.1 V.
17-03-17 19:38:12.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35233 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35234 (-165.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35229 (-165.8 uncal um), Max = 35238 (-165.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:38:12.348 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35233, posNoise = 5, negNoise = 4
17-03-17 19:38:12.348 -07 000000610 INF: Z Motor: After move to -0.166661, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:12.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:38:12.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:12.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:12.348 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:12.348 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:38:12.348 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:12.348 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:12.348 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:38:12.348 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:38:12.348 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:12.348 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:38:12.348 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:38:12.348 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:38:12.358 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:38:12.358 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:38:12.358 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:38:12.358 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:38:12.358 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:38:12.368 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:38:12.368 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:38:12.368 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:38:12.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 36584 150\n [Camera]
17-03-17 19:38:12.568 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:38:12.968 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:38:12.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:38:12.968 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:12.968 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:12.968 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:38:12.978 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:38:12.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:38:12.978 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:12.978 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:12.978 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:38:13.168 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36584 788
17-03-17 19:38:13.308 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:38:13.358 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:38:13.358 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:38:13.358 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:13.358 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:13.358 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:38:13.358 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:38:13.358 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:13.368 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:38:13.368 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:13.368 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:38:13.508 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1134
17-03-17 19:38:13.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1134
17-03-17 19:38:13.508 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:13.508 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:13.508 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:38:13.518 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1134
17-03-17 19:38:13.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1134
17-03-17 19:38:13.518 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:13.518 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:13.518 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:38:13.698 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1324
17-03-17 19:38:13.698 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:38:13.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 36584 150' command took 2 ms to send, 1326 ms to get response, and 1332 ms overall
17-03-17 19:38:13.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:38:13.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.166667618401799. ------
17-03-17 19:38:13.708 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:13.708 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17308 mm
17-03-17 19:38:13.708 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:38:13.708 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:13.708 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:38:13.708 -07 000000475 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 19:38:13.708 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 37809, sync = True, waitForSettling = False)
17-03-17 19:38:13.708 -07 000000593 INF: Z Motor: Moving to -0.173079 mm, started at -0.166668 mm, distance = -6.41 um
17-03-17 19:38:13.718 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:38:13.718 -07 000000593 INF: FPGA: Xmit ZDACW 37809\n [Z Motor]
17-03-17 19:38:13.718 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:38:13.728 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:13.728 -07 000000593 INF: FPGA: 'ZDACW 37809' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:38:13.728 -07 000000551 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:38:13.738 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:38:13.738 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:38:13.738 -07 000000475 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:13.738 -07 000000475 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:38:13.738 -07 000000475 INF: Y Motor: Moving 1353 steps-32
17-03-17 19:38:13.748 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:13.748 -07 000000512 INF: FPGA: Recv ZDACR 37809
17-03-17 19:38:13.758 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:38:13.758 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:38:13.758 -07 000000593 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 19:38:13.908 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:38:13.908 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:38:13.908 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:13.918 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:38:13.918 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:38:13.918 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:13.918 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:38:13.918 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:38:13.918 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:13.928 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:38:13.938 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:38:13.938 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:38:14.128 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:38:14.128 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:38:14.158 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:14.158 -07 000000478 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:38:14.168 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:38:14.168 -07 000000475 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:14.168 -07 000000475 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:38:14.168 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.131 mm/sec
17-03-17 19:38:15.118 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:15.118 -07 000000486 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:38:15.128 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:15.128 -07 000000475 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:15.138 -07 000000475 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:38:15.138 -07 000000475 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:38:15.138 -07 000000475 INF: Y Motor: Moved to 74.0088 after 1429 ms (table move)
17-03-17 19:38:15.148 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173079 mm (DAC = 37809)
17-03-17 19:38:15.148 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:15.148 -07 000000486 INF: FPGA: Recv ZSGSRD 36235
17-03-17 19:38:15.158 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:15.158 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:15.158 -07 000000486 INF: FPGA: Recv ZSGSRD 36225
17-03-17 19:38:15.168 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:15.168 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:15.168 -07 000000486 INF: FPGA: Recv ZSGSRD 36237
17-03-17 19:38:15.178 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:15.178 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:15.178 -07 000000486 INF: FPGA: Recv ZSGSRD 36233
17-03-17 19:38:15.188 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:15.188 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:15.188 -07 000000486 INF: FPGA: Recv ZSGSRD 36233
17-03-17 19:38:15.198 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:15.198 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:15.198 -07 000000486 INF: FPGA: Recv ZSGSRD 36237
17-03-17 19:38:15.208 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:15.208 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:15.208 -07 000000486 INF: FPGA: Recv ZSGSRD 36234
17-03-17 19:38:15.218 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:15.218 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:15.218 -07 000000486 INF: FPGA: Recv ZSGSRD 36234
17-03-17 19:38:15.228 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:15.228 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:15.228 -07 000000486 INF: FPGA: Recv ZSGSRD 36232
17-03-17 19:38:15.238 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:15.238 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:15.238 -07 000000541 INF: FPGA: Recv ZSGSRD 36228
17-03-17 19:38:15.248 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:15.258 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:15.258 -07 000000486 INF: FPGA: Recv ZPIEZORD 32455
17-03-17 19:38:15.268 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:38:15.268 -07 000000482 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.769 V. Piezo Error = -8.4 V.
17-03-17 19:38:15.268 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36233 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36234 (-172.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36225 (-172.2 uncal um), Max = 36237 (-172.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:38:15.268 -07 000000482 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36233, posNoise = 4, negNoise = 8
17-03-17 19:38:15.268 -07 000000482 INF: Z Motor: After move to -0.173079, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:15.268 -07 000000482 INF: Z Motor: Settle wait time = 1433 ms, measure time = 120 ms (allowed 150 ms), total time = 1553 ms
17-03-17 19:38:15.268 -07 000000482 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-17 19:38:15.298 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 19:38:15.298 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:38:15.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:15.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:15.298 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:15.298 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:15.298 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:38:15.298 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:15.298 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:38:15.298 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:38:15.308 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:38:15.308 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:38:15.308 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:38:15.308 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:38:15.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:38:15.358 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:38:15.558 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:38:15.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:38:15.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:38:15.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 19:38:15.568 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.974486,
17-03-17 19:38:15.598 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:38:15.598 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 19:38:15.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 19:38:15.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:38:15.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:15.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:38:15.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:38:15.698 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:15.698 -07 000000475 INF: Autofocus start
17-03-17 19:38:15.698 -07 000000475 INF: MeasureProfile start
17-03-17 19:38:15.698 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:15.708 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:38:15.708 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:38:15.708 -07 000000475 INF: MeasureProfile done
17-03-17 19:38:15.708 -07 000000475 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:38:15.708 -07 000000475 INF: Autofocus finished
17-03-17 19:38:15.908 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:38:15.908 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 19:38:15.918 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.17309183054356. ----------
17-03-17 19:38:15.918 -07 000000610 INF: Cycle	28	Tile	18	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:38:15.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36324, sync = True, waitForSettling = True)
17-03-17 19:38:15.918 -07 000000610 INF: Z Motor: Moving to -0.166281 mm, started at -0.173092 mm, distance = 6.81 um
17-03-17 19:38:15.918 -07 000000610 INF: FPGA: Xmit ZDACW 36324\n [Z Motor]
17-03-17 19:38:15.918 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:38:15.928 -07 000000610 INF: FPGA: 'ZDACW 36324' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:38:15.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:15.928 -07 000000512 INF: FPGA: Recv ZDACR 36324
17-03-17 19:38:15.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:15.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:38:16.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:16.088 -07 000000608 INF: FPGA: Recv ZSGSRD 35172
17-03-17 19:38:16.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:16.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:16.098 -07 000000623 INF: FPGA: Recv ZSGSRD 35177
17-03-17 19:38:16.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:16.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:16.108 -07 000000608 INF: FPGA: Recv ZSGSRD 35171
17-03-17 19:38:16.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:16.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:16.118 -07 000000475 INF: FPGA: Recv ZSGSRD 35174
17-03-17 19:38:16.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:16.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:16.128 -07 000000623 INF: FPGA: Recv ZSGSRD 35172
17-03-17 19:38:16.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:16.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:16.138 -07 000000482 INF: FPGA: Recv ZSGSRD 35177
17-03-17 19:38:16.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:16.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:16.148 -07 000000486 INF: FPGA: Recv ZSGSRD 35176
17-03-17 19:38:16.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:16.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:16.158 -07 000000482 INF: FPGA: Recv ZSGSRD 35170
17-03-17 19:38:16.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:16.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:16.168 -07 000000486 INF: FPGA: Recv ZSGSRD 35179
17-03-17 19:38:16.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:16.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:16.178 -07 000000482 INF: FPGA: Recv ZSGSRD 35173
17-03-17 19:38:16.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:16.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:16.188 -07 000000486 INF: FPGA: Recv ZPIEZORD 31073
17-03-17 19:38:16.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:16.198 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.543 V. Piezo Error = -9.0 V.
17-03-17 19:38:16.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35174 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35174 (-165.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35170 (-165.4 uncal um), Max = 35179 (-165.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:38:16.198 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35174, posNoise = 5, negNoise = 4
17-03-17 19:38:16.198 -07 000000610 INF: Z Motor: After move to -0.166281, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:16.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:38:16.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:16.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:16.198 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:38:16.198 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:38:16.198 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:38:16.198 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:16.198 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:16.198 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:16.198 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:38:16.198 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:38:16.198 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:16.198 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:38:16.208 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:38:16.208 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:38:16.208 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:38:16.208 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:38:16.218 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:38:16.218 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:38:16.218 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 19:38:16.218 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:38:16.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 36501 150\n [Camera]
17-03-17 19:38:16.418 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:38:16.708 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:38:16.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:38:16.818 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:38:16.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:38:16.818 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:16.818 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:16.818 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2187315360, 0x0, 391868352) start.
17-03-17 19:38:16.818 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:38:16.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:38:16.828 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:16.828 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:16.828 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2222737624, 0x0, 418435064) start.
17-03-17 19:38:17.008 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36501 788
17-03-17 19:38:17.158 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:38:17.208 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2187315360, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:38:17.208 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:38:17.208 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:17.208 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2222737624, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:38:17.208 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:38:17.208 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:17.208 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:17.208 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:38:17.218 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:17.218 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:38:17.358 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:38:17.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:38:17.358 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:17.358 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:17.358 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:38:17.358 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:38:17.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:38:17.358 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:17.358 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:17.358 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:38:17.548 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1324
17-03-17 19:38:17.548 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:38:17.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 36501 150' command took 2 ms to send, 1325 ms to get response, and 1332 ms overall
17-03-17 19:38:17.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:38:17.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.166288589885435. ------
17-03-17 19:38:17.558 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17261 mm
17-03-17 19:38:17.558 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:38:17.558 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:17.558 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:38:17.558 -07 000000623 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 19:38:17.558 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37708, sync = True, waitForSettling = False)
17-03-17 19:38:17.558 -07 000000512 INF: Z Motor: Moving to -0.172616 mm, started at -0.166289 mm, distance = -6.33 um
17-03-17 19:38:17.558 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:17.568 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:38:17.568 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:17.568 -07 000000501 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:38:17.578 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:38:17.578 -07 000000623 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:17.578 -07 000000623 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:38:17.578 -07 000000623 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:38:17.578 -07 000000512 INF: FPGA: Xmit ZDACW 37708\n [Z Motor]
17-03-17 19:38:17.578 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:38:17.588 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:38:17.588 -07 000000512 INF: FPGA: 'ZDACW 37708' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:38:17.598 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:38:17.608 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:17.608 -07 000000431 INF: FPGA: Recv ZDACR 37708
17-03-17 19:38:17.618 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:38:17.618 -07 000000512 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 19:38:17.758 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:38:17.758 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:38:17.758 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:17.758 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 19:38:17.758 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:38:17.758 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:17.768 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:17.768 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:38:17.768 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 19:38:17.768 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:38:17.788 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:38:17.788 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:38:17.968 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:38:17.968 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:38:17.998 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:17.998 -07 000000608 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:38:18.008 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:18.008 -07 000000623 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:18.008 -07 000000623 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 19:38:18.008 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 19:38:18.958 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:18.958 -07 000000431 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:38:18.968 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:18.968 -07 000000623 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:18.978 -07 000000623 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:38:18.978 -07 000000623 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:38:18.978 -07 000000623 INF: Y Motor: Moved to 74.8330 after 1418 ms (table move)
17-03-17 19:38:18.988 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172616 mm (DAC = 37708)
17-03-17 19:38:18.988 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:18.988 -07 000000501 INF: FPGA: Recv ZSGSRD 36164
17-03-17 19:38:18.998 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:18.998 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:18.998 -07 000000431 INF: FPGA: Recv ZSGSRD 36159
17-03-17 19:38:19.008 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:19.008 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:19.008 -07 000000626 INF: FPGA: Recv ZSGSRD 36158
17-03-17 19:38:19.018 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:19.018 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:19.018 -07 000000501 INF: FPGA: Recv ZSGSRD 36156
17-03-17 19:38:19.028 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:19.028 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:19.028 -07 000000431 INF: FPGA: Recv ZSGSRD 36158
17-03-17 19:38:19.038 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:19.038 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:19.038 -07 000000626 INF: FPGA: Recv ZSGSRD 36164
17-03-17 19:38:19.048 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:19.048 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:19.048 -07 000000626 INF: FPGA: Recv ZSGSRD 36164
17-03-17 19:38:19.058 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:19.058 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:19.058 -07 000000486 INF: FPGA: Recv ZSGSRD 36162
17-03-17 19:38:19.068 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:19.068 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:19.068 -07 000000608 INF: FPGA: Recv ZSGSRD 36162
17-03-17 19:38:19.078 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:19.078 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:19.078 -07 000000512 INF: FPGA: Recv ZSGSRD 36158
17-03-17 19:38:19.088 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:19.088 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:19.088 -07 000000486 INF: FPGA: Recv ZPIEZORD 32360
17-03-17 19:38:19.098 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:19.098 -07 000000475 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.754 V. Piezo Error = -8.4 V.
17-03-17 19:38:19.098 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36160 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36160 (-171.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36156 (-171.7 uncal um), Max = 36164 (-171.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:38:19.098 -07 000000475 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36160, posNoise = 4, negNoise = 4
17-03-17 19:38:19.098 -07 000000475 INF: Z Motor: After move to -0.172616, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:19.098 -07 000000475 INF: Z Motor: Settle wait time = 1422 ms, measure time = 111 ms (allowed 150 ms), total time = 1533 ms
17-03-17 19:38:19.098 -07 000000475 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 19:38:19.138 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1576 ms
17-03-17 19:38:19.138 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:38:19.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:19.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:19.138 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:19.138 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:19.138 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:38:19.138 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:19.138 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:19.138 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:38:19.148 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:38:19.148 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:38:19.158 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:38:19.158 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:38:19.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:38:19.208 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:38:19.408 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:38:19.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:38:19.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:38:19.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2352550048, 0x0, 559484976) start.
17-03-17 19:38:19.448 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:38:19.448 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 19:38:19.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 19:38:19.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2352550048, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:38:19.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:19.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:38:19.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:38:19.548 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:19.548 -07 000000482 INF: Autofocus start
17-03-17 19:38:19.548 -07 000000482 INF: MeasureProfile start
17-03-17 19:38:19.548 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:19.558 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:38:19.558 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:38:19.558 -07 000000482 INF: MeasureProfile done
17-03-17 19:38:19.558 -07 000000482 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:38:19.558 -07 000000482 INF: Autofocus finished
17-03-17 19:38:19.758 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:38:19.758 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:38:19.758 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.172622863057211. ----------
17-03-17 19:38:19.768 -07 000000610 INF: Cycle	28	Tile	19	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:38:19.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36223, sync = True, waitForSettling = True)
17-03-17 19:38:19.768 -07 000000610 INF: Z Motor: Moving to -0.165818 mm, started at -0.172623 mm, distance = 6.80 um
17-03-17 19:38:19.768 -07 000000610 INF: FPGA: Xmit ZDACW 36223\n [Z Motor]
17-03-17 19:38:19.768 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:38:19.778 -07 000000610 INF: FPGA: 'ZDACW 36223' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:38:19.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:19.778 -07 000000512 INF: FPGA: Recv ZDACR 36223
17-03-17 19:38:19.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:19.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:38:19.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:19.938 -07 000000501 INF: FPGA: Recv ZSGSRD 35102
17-03-17 19:38:19.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:19.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:19.948 -07 000000626 INF: FPGA: Recv ZSGSRD 35106
17-03-17 19:38:19.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:19.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:19.958 -07 000000626 INF: FPGA: Recv ZSGSRD 35101
17-03-17 19:38:19.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:19.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:19.968 -07 000000501 INF: FPGA: Recv ZSGSRD 35096
17-03-17 19:38:19.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:19.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:19.978 -07 000000501 INF: FPGA: Recv ZSGSRD 35103
17-03-17 19:38:19.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:19.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:19.988 -07 000000501 INF: FPGA: Recv ZSGSRD 35105
17-03-17 19:38:19.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:19.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:19.998 -07 000000431 INF: FPGA: Recv ZSGSRD 35101
17-03-17 19:38:20.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:20.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:20.008 -07 000000501 INF: FPGA: Recv ZSGSRD 35103
17-03-17 19:38:20.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:20.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:20.018 -07 000000501 INF: FPGA: Recv ZSGSRD 35105
17-03-17 19:38:20.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:20.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:20.028 -07 000000501 INF: FPGA: Recv ZSGSRD 35102
17-03-17 19:38:20.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:20.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:20.038 -07 000000569 INF: FPGA: Recv ZPIEZORD 30965
17-03-17 19:38:20.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:20.048 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.527 V. Piezo Error = -9.1 V.
17-03-17 19:38:20.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35102 (-165.0 uncal um), Error = 0.9 uncal um, Median = 35102 (-165.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35096 (-164.9 uncal um), Max = 35106 (-165.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:38:20.048 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35102, posNoise = 4, negNoise = 6
17-03-17 19:38:20.048 -07 000000610 INF: Z Motor: After move to -0.165818, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:20.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:38:20.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:20.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:20.048 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:20.048 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:38:20.048 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:20.048 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:20.048 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:38:20.048 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:38:20.048 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:38:20.048 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:38:20.048 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:20.048 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:38:20.058 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:38:20.058 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:38:20.058 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:38:20.058 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:38:20.078 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 20 ms.
17-03-17 19:38:20.078 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 19:38:20.078 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 19 ms.
17-03-17 19:38:20.078 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 25 ms.
17-03-17 19:38:20.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 36399 150\n [Camera]
17-03-17 19:38:20.278 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:38:20.678 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:38:20.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:38:20.678 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:20.678 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:20.678 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2367226128, 0x0, 391868352) start.
17-03-17 19:38:20.678 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:38:20.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:38:20.688 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:20.688 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:20.688 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:38:20.868 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36399 788
17-03-17 19:38:20.928 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.988112,
17-03-17 19:38:21.018 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:38:21.058 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2367226128, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:38:21.058 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:38:21.058 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:21.058 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:21.068 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:38:21.068 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:38:21.068 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:38:21.068 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:21.068 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:38:21.078 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:38:21.218 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:38:21.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:38:21.218 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:21.218 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:21.218 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 19:38:21.218 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:38:21.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:38:21.218 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:21.218 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:21.218 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 19:38:21.408 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:38:21.408 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:38:21.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 36399 150' command took 2 ms to send, 1325 ms to get response, and 1331 ms overall
17-03-17 19:38:21.608 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:38:21.608 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:38:21.608 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:21.608 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 19:38:21.608 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:38:21.608 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:21.618 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:21.618 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:38:21.618 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:38:21.618 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:38:21.618 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:38:21.658 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 19:38:21.658 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:38:21.698 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 19:38:21.708 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 19:38:21.708 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:38:21.708 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:38:21.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:38:21.708 -07 000000482 INF: FPGA: Recv EMCUR 
17-03-17 19:38:21.718 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:38:21.718 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 19:38:22.218 -07 000000431 INF: FPGA: Recv EMIN
17-03-17 19:38:22.218 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 19:38:22.218 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 19:38:22.218 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-17 19:38:22.228 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:38:22.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:38:22.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8330078125, Z-Position -0.165826046611228. ------
17-03-17 19:38:22.228 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:22.228 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14047 mm
17-03-17 19:38:22.228 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:38:22.228 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:38:22.228 -07 000000501 INF: Y Motor: Moving to 59.9126 mm, started at 74.8330 mm, delta = -14.9204 mm
17-03-17 19:38:22.228 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:22.238 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:38:22.238 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:22.238 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30686, sync = True, waitForSettling = False)
17-03-17 19:38:22.238 -07 000000486 INF: Z Motor: Moving to -0.140472 mm, started at -0.165826 mm, distance = 25.35 um
17-03-17 19:38:22.238 -07 000000482 INF: FPGA: Recv YRDPOS 153259
17-03-17 19:38:22.248 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:38:22.248 -07 000000501 INF: Y Motor: Encoder = 153259 = motor step 119733.6 = 74.8335 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:22.248 -07 000000486 INF: FPGA: Xmit ZDACW 30686\n [Z Motor]
17-03-17 19:38:22.248 -07 000000501 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 19:38:22.248 -07 000000501 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:38:22.248 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:38:22.258 -07 000000486 INF: FPGA: 'ZDACW 30686' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:38:22.258 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:38:22.268 -07 000000501 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:38:22.278 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:22.278 -07 000000431 INF: FPGA: Recv ZDACR 30686
17-03-17 19:38:22.288 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:38:22.288 -07 000000486 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 19:38:22.458 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:38:22.458 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 19:38:23.888 -07 000000486 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 19:38:23.888 -07 000000501 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1645 ms overall
17-03-17 19:38:23.888 -07 000000501 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:38:23.888 -07 000000501 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 19:38:23.888 -07 000000501 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1645 ms, distance = 14.920 mm, average velocity = 9.070 mm/sec
17-03-17 19:38:26.298 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.999021,
17-03-17 19:38:26.708 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:38:26.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:38:26.738 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:26.738 -07 000000482 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:38:26.748 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:26.748 -07 000000501 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:26.768 -07 000000501 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:38:26.768 -07 000000501 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 19:38:26.768 -07 000000501 INF: Y Motor: Moved to 59.9116 after 4540 ms
17-03-17 19:38:26.778 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140472 mm (DAC = 30686)
17-03-17 19:38:26.778 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:26.778 -07 000000486 INF: FPGA: Recv ZSGSRD 31160
17-03-17 19:38:26.788 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:38:26.788 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:26.788 -07 000000478 INF: FPGA: Recv ZSGSRD 31153
17-03-17 19:38:26.798 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:26.798 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:26.798 -07 000000547 INF: FPGA: Recv ZSGSRD 31158
17-03-17 19:38:26.808 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:26.808 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:26.808 -07 000000478 INF: FPGA: Recv ZSGSRD 31151
17-03-17 19:38:26.818 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:26.818 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:26.818 -07 000000431 INF: FPGA: Recv ZSGSRD 31160
17-03-17 19:38:26.828 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:26.828 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:26.828 -07 000000501 INF: FPGA: Recv ZSGSRD 31158
17-03-17 19:38:26.838 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:26.838 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:26.838 -07 000000431 INF: FPGA: Recv ZSGSRD 31156
17-03-17 19:38:26.848 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:26.848 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:26.848 -07 000000501 INF: FPGA: Recv ZSGSRD 31160
17-03-17 19:38:26.858 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:26.858 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:26.858 -07 000000431 INF: FPGA: Recv ZSGSRD 31153
17-03-17 19:38:26.868 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:26.868 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:26.868 -07 000000478 INF: FPGA: Recv ZSGSRD 31160
17-03-17 19:38:26.878 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:26.878 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:26.878 -07 000000547 INF: FPGA: Recv ZPIEZORD 26809
17-03-17 19:38:26.888 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:26.888 -07 000000623 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.682 V. Piezo Error = -9.6 V.
17-03-17 19:38:26.888 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.5 um, Read 10 ADC samples: Avg = 31157 (-139.7 uncal um), Error = 0.8 uncal um, Median = 31158 (-139.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 31151 (-139.6 uncal um), Max = 31160 (-139.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:38:26.888 -07 000000623 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31157, posNoise = 3, negNoise = 6
17-03-17 19:38:26.888 -07 000000623 INF: Z Motor: After move to -0.140472, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:26.888 -07 000000623 INF: Z Motor: Settle wait time = 4539 ms, measure time = 109 ms (allowed 150 ms), total time = 4648 ms
17-03-17 19:38:26.888 -07 000000623 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 19:38:26.938 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4704 ms
17-03-17 19:38:26.938 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:38:26.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:26.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:26.938 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:26.938 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:26.938 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:38:26.938 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:26.938 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:26.938 -07 000000478 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:38:26.968 -07 000000478 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 19:38:26.968 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:38:26.968 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:38:26.968 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:38:26.978 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:38:26.978 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-17 19:38:26.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:38:27.028 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 19:38:27.228 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 19:38:27.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 19:38:27.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:38:27.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) start.
17-03-17 19:38:27.268 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:38:27.268 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 19:38:27.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 19:38:27.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:38:27.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:27.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:38:27.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:38:27.468 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:27.468 -07 000000478 INF: Image SNR check: start
17-03-17 19:38:27.468 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:27.478 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:38:27.478 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:38:27.478 -07 000000478 INF: Image SNR check: pass  [peak (Max-Min)=62.45]
17-03-17 19:38:27.478 -07 000000478 INF: Autofocus start
17-03-17 19:38:27.478 -07 000000478 INF: MeasureProfile start
17-03-17 19:38:27.488 -07 000000478 INF: MeasureProfile done
17-03-17 19:38:27.488 -07 000000478 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 19:38:27.488 -07 000000478 INF: Autofocus finished
17-03-17 19:38:27.678 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:38:27.678 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:38:27.678 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.140482529711981. ----------
17-03-17 19:38:27.678 -07 000000610 INF: Cycle	28	Tile	1	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:38:27.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29164, sync = True, waitForSettling = True)
17-03-17 19:38:27.688 -07 000000610 INF: Z Motor: Moving to -0.133504 mm, started at -0.140483 mm, distance = 6.98 um
17-03-17 19:38:27.688 -07 000000610 INF: FPGA: Xmit ZDACW 29164\n [Z Motor]
17-03-17 19:38:27.688 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:38:27.698 -07 000000610 INF: FPGA: 'ZDACW 29164' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:27.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:27.698 -07 000000623 INF: FPGA: Recv ZDACR 29164
17-03-17 19:38:27.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:27.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:38:27.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:27.858 -07 000000431 INF: FPGA: Recv ZSGSRD 30071
17-03-17 19:38:27.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:27.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:27.868 -07 000000486 INF: FPGA: Recv ZSGSRD 30077
17-03-17 19:38:27.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:27.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:27.878 -07 000000501 INF: FPGA: Recv ZSGSRD 30068
17-03-17 19:38:27.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:27.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:27.888 -07 000000478 INF: FPGA: Recv ZSGSRD 30061
17-03-17 19:38:27.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:27.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:27.898 -07 000000431 INF: FPGA: Recv ZSGSRD 30080
17-03-17 19:38:27.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:27.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:27.908 -07 000000486 INF: FPGA: Recv ZSGSRD 30073
17-03-17 19:38:27.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:27.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:27.918 -07 000000501 INF: FPGA: Recv ZSGSRD 30074
17-03-17 19:38:27.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:27.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:27.928 -07 000000512 INF: FPGA: Recv ZSGSRD 30066
17-03-17 19:38:27.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:27.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:27.938 -07 000000623 INF: FPGA: Recv ZSGSRD 30069
17-03-17 19:38:27.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:27.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:27.948 -07 000000482 INF: FPGA: Recv ZSGSRD 30072
17-03-17 19:38:27.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:27.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:27.958 -07 000000482 INF: FPGA: Recv ZPIEZORD 25636
17-03-17 19:38:27.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:27.968 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.450 V. Piezo Error = -9.7 V.
17-03-17 19:38:27.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30071 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30072 (-132.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30061 (-132.7 uncal um), Max = 30080 (-132.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:38:27.968 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30071, posNoise = 9, negNoise = 10
17-03-17 19:38:27.968 -07 000000610 INF: Z Motor: After move to -0.133504, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:27.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:38:27.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:27.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:27.968 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:27.968 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:38:27.968 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:38:27.968 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:38:27.968 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:27.968 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:27.968 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:38:27.968 -07 000000482 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:38:27.968 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:27.968 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:38:27.968 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:38:27.968 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:38:27.978 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:38:27.978 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:38:27.988 -07 000000482 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 19 ms.
17-03-17 19:38:27.988 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:38:27.988 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:38:27.988 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:38:27.998 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:38:27.998 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 19:38:28.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 29341 150\n [Camera]
17-03-17 19:38:28.208 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:38:28.608 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:38:28.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:38:28.608 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:28.608 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:28.608 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:38:28.608 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:38:28.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:38:28.608 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:28.608 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:28.608 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:38:28.798 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29341 788
17-03-17 19:38:28.948 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:38:28.998 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:38:28.998 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:38:28.998 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:28.998 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 19:38:28.998 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:38:28.998 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:28.998 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:38:28.998 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:38:28.998 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:38:29.008 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:38:29.148 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:38:29.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:38:29.148 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:29.278 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:38:29.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:38:29.278 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:29.278 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:29.278 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 19:38:29.288 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:29.288 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) start.
17-03-17 19:38:29.338 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:38:29.338 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:38:29.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 29341 150' command took 2 ms to send, 1322 ms to get response, and 1331 ms overall
17-03-17 19:38:29.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:38:29.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.133505835326029. ------
17-03-17 19:38:29.338 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:29.338 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13992 mm
17-03-17 19:38:29.338 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:38:29.348 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:38:29.348 -07 000000623 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 19:38:29.348 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:29.668 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:38:29.668 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:38:29.668 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:29.668 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:38:29.668 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:38:29.668 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:29.678 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:38:29.678 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-17 19:38:29.678 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:29.678 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:38:29.688 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30564, sync = True, waitForSettling = False)
17-03-17 19:38:29.688 -07 000000486 INF: Z Motor: Moving to -0.139913 mm, started at -0.133506 mm, distance = -6.41 um
17-03-17 19:38:29.688 -07 000000486 INF: FPGA: Xmit ZDACW 30564\n [Z Motor]
17-03-17 19:38:29.688 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:29.688 -07 000000478 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:38:29.688 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:38:29.688 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 349 ms to get response, and 350 ms overall
17-03-17 19:38:29.688 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 339 ms to get response, and 341 ms overall
17-03-17 19:38:29.688 -07 000000623 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:29.688 -07 000000623 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:38:29.698 -07 000000623 INF: Y Motor: Moving 1330 steps2
17-03-17 19:38:29.698 -07 000000486 INF: FPGA: 'ZDACW 30564' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:38:29.698 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:38:29.708 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:29.708 -07 000000478 INF: FPGA: Recv ZDACR 30564
17-03-17 19:38:29.718 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:38:29.718 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:38:29.718 -07 000000486 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 19:38:29.918 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:38:29.918 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 223 ms overall
17-03-17 19:38:30.068 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 19:38:30.068 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 19:38:30.098 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:30.098 -07 000000478 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:38:30.108 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:38:30.108 -07 000000623 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:30.108 -07 000000623 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:38:30.108 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.831 mm, average velocity = 2.198 mm/sec
17-03-17 19:38:31.058 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:31.058 -07 000000486 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:38:31.068 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:31.068 -07 000000623 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:31.088 -07 000000623 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:38:31.088 -07 000000623 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:38:31.088 -07 000000623 INF: Y Motor: Moved to 60.7339 after 1739 ms (table move)
17-03-17 19:38:31.088 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139913 mm (DAC = 30564)
17-03-17 19:38:31.088 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:31.088 -07 000000501 INF: FPGA: Recv ZSGSRD 31068
17-03-17 19:38:31.098 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:38:31.098 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:31.098 -07 000000478 INF: FPGA: Recv ZSGSRD 31064
17-03-17 19:38:31.108 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:31.108 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:31.108 -07 000000501 INF: FPGA: Recv ZSGSRD 31066
17-03-17 19:38:31.118 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:31.118 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:31.118 -07 000000501 INF: FPGA: Recv ZSGSRD 31075
17-03-17 19:38:31.128 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:31.128 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:31.128 -07 000000478 INF: FPGA: Recv ZSGSRD 31077
17-03-17 19:38:31.138 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:31.138 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:31.138 -07 000000486 INF: FPGA: Recv ZSGSRD 31075
17-03-17 19:38:31.148 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:31.148 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:31.148 -07 000000501 INF: FPGA: Recv ZSGSRD 31067
17-03-17 19:38:31.158 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:31.158 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:31.158 -07 000000623 INF: FPGA: Recv ZSGSRD 31061
17-03-17 19:38:31.168 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:31.168 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:31.168 -07 000000501 INF: FPGA: Recv ZSGSRD 31069
17-03-17 19:38:31.178 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:31.178 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:31.178 -07 000000623 INF: FPGA: Recv ZSGSRD 31066
17-03-17 19:38:31.188 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:31.188 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:31.188 -07 000000501 INF: FPGA: Recv ZPIEZORD 26968
17-03-17 19:38:31.198 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:31.198 -07 000000482 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.664 V. Piezo Error = -9.0 V.
17-03-17 19:38:31.198 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31069 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31068 (-139.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31061 (-139.1 uncal um), Max = 31077 (-139.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:38:31.198 -07 000000482 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31069, posNoise = 8, negNoise = 8
17-03-17 19:38:31.198 -07 000000482 INF: Z Motor: After move to -0.139913, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:31.198 -07 000000482 INF: Z Motor: Settle wait time = 1399 ms, measure time = 107 ms (allowed 150 ms), total time = 1506 ms
17-03-17 19:38:31.198 -07 000000482 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:38:31.248 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1901 ms
17-03-17 19:38:31.248 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:38:31.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:31.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:31.248 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:31.248 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:31.248 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:38:31.248 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:31.248 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:31.248 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:38:31.258 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:38:31.258 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:38:31.268 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:38:31.268 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:38:31.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:38:31.318 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 19:38:31.518 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 19:38:31.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 19:38:31.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:38:31.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 19:38:31.548 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:38:31.558 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 19:38:31.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 19:38:31.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:38:31.648 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:31.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:38:31.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 19:38:31.668 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.024884,
17-03-17 19:38:31.708 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:38:31.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:38:31.758 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:31.758 -07 000000482 INF: Autofocus start
17-03-17 19:38:31.758 -07 000000482 INF: MeasureProfile start
17-03-17 19:38:31.758 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:31.768 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:38:31.768 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:38:31.778 -07 000000482 INF: MeasureProfile done
17-03-17 19:38:31.778 -07 000000482 INF: X=9  Z correction [um]=0.01934518
17-03-17 19:38:31.778 -07 000000482 INF: Autofocus finished
17-03-17 19:38:31.968 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:38:31.968 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:38:31.968 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.139917199043506. ----------
17-03-17 19:38:31.968 -07 000000610 INF: Cycle	28	Tile	2	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:38:31.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29081, sync = True, waitForSettling = True)
17-03-17 19:38:31.978 -07 000000610 INF: Z Motor: Moving to -0.133124 mm, started at -0.139917 mm, distance = 6.79 um
17-03-17 19:38:31.988 -07 000000610 INF: FPGA: Xmit ZDACW 29081\n [Z Motor]
17-03-17 19:38:31.988 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:38:31.998 -07 000000610 INF: FPGA: 'ZDACW 29081' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:38:31.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:31.998 -07 000000501 INF: FPGA: Recv ZDACR 29081
17-03-17 19:38:32.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:32.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:38:32.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:32.158 -07 000000478 INF: FPGA: Recv ZSGSRD 30008
17-03-17 19:38:32.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:32.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:32.168 -07 000000541 INF: FPGA: Recv ZSGSRD 30011
17-03-17 19:38:32.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:32.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:32.178 -07 000000551 INF: FPGA: Recv ZSGSRD 30013
17-03-17 19:38:32.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:32.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:32.188 -07 000000593 INF: FPGA: Recv ZSGSRD 30013
17-03-17 19:38:32.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:32.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:32.198 -07 000000623 INF: FPGA: Recv ZSGSRD 30007
17-03-17 19:38:32.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:32.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:32.208 -07 000000501 INF: FPGA: Recv ZSGSRD 30013
17-03-17 19:38:32.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:32.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:32.218 -07 000000478 INF: FPGA: Recv ZSGSRD 30015
17-03-17 19:38:32.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:32.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:32.228 -07 000000593 INF: FPGA: Recv ZSGSRD 30015
17-03-17 19:38:32.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:32.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:32.238 -07 000000551 INF: FPGA: Recv ZSGSRD 30015
17-03-17 19:38:32.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:32.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:32.248 -07 000000501 INF: FPGA: Recv ZSGSRD 30009
17-03-17 19:38:32.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:32.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:32.258 -07 000000482 INF: FPGA: Recv ZPIEZORD 25619
17-03-17 19:38:32.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:32.268 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.437 V. Piezo Error = -9.6 V.
17-03-17 19:38:32.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30012 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30013 (-132.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30007 (-132.3 uncal um), Max = 30015 (-132.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:38:32.268 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30012, posNoise = 3, negNoise = 5
17-03-17 19:38:32.268 -07 000000610 INF: Z Motor: After move to -0.133124, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:32.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-17 19:38:32.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:32.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:32.268 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:32.268 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:32.268 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:38:32.268 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:38:32.268 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:38:32.268 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:32.268 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:32.268 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:38:32.268 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:38:32.268 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:38:32.278 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:38:32.278 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:38:32.278 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:38:32.278 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:38:32.288 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:38:32.288 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:38:32.288 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:38:32.288 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:38:32.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 29258 150\n [Camera]
17-03-17 19:38:32.488 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:38:32.898 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:38:32.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:38:32.898 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:32.898 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:38:32.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:38:32.898 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:32.898 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:32.898 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2487301960, 0x0, 391868352) start.
17-03-17 19:38:32.908 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:32.908 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:38:33.088 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29258 788
17-03-17 19:38:33.238 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:38:33.288 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:38:33.288 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:38:33.288 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:33.288 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2487301960, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:38:33.288 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:38:33.288 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:33.288 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:33.288 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:33.288 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:38:33.298 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:38:33.438 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1134
17-03-17 19:38:33.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1134
17-03-17 19:38:33.548 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1134
17-03-17 19:38:33.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1134
17-03-17 19:38:33.548 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:33.548 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:33.548 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:33.548 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:38:33.558 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:33.558 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:38:33.628 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:38:33.628 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:38:33.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 29258 150' command took 2 ms to send, 1321 ms to get response, and 1332 ms overall
17-03-17 19:38:33.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:38:33.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.133126806809665. ------
17-03-17 19:38:33.628 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:33.628 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13986 mm
17-03-17 19:38:33.628 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:38:33.628 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:38:33.628 -07 000000482 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 19:38:33.638 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:33.948 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:38:33.948 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:38:33.948 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:38:33.948 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:33.958 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:38:33.958 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:33.958 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:38:33.958 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:38:33.958 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:38:33.968 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:38:33.968 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30553, sync = True, waitForSettling = False)
17-03-17 19:38:33.968 -07 000000623 INF: Z Motor: Moving to -0.139863 mm, started at -0.133127 mm, distance = -6.74 um
17-03-17 19:38:33.968 -07 000000623 INF: FPGA: Xmit ZDACW 30553\n [Z Motor]
17-03-17 19:38:33.978 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:33.978 -07 000000478 INF: FPGA: Recv YRDPOS 124384
17-03-17 19:38:33.978 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:38:33.978 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 332 ms to get response, and 342 ms overall
17-03-17 19:38:33.978 -07 000000482 INF: Y Motor: Encoder = 124384 = motor step 97175.0 = 60.7344 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:33.978 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 342 ms to get response, and 345 ms overall
17-03-17 19:38:33.978 -07 000000623 INF: FPGA: 'ZDACW 30553' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:38:33.978 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:33.978 -07 000000478 INF: FPGA: Recv ZDACR 30553
17-03-17 19:38:33.978 -07 000000482 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:38:33.978 -07 000000482 INF: Y Motor: Moving 1341 steps-18
17-03-17 19:38:33.988 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:38:33.988 -07 000000623 INF: Z Motor: MoveAbsStepped took 11 ms (did NOT wait for settling yet))
17-03-17 19:38:33.988 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:38:33.998 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:38:34.188 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:38:34.188 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 19:38:34.368 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 19:38:34.368 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 19:38:34.408 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:34.408 -07 000000478 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:38:34.418 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:38:34.418 -07 000000482 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:34.418 -07 000000482 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:38:34.418 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.839 mm, average velocity = 2.151 mm/sec
17-03-17 19:38:35.368 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:35.368 -07 000000541 INF: FPGA: Recv YRDPOS 126085
17-03-17 19:38:35.378 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:35.378 -07 000000482 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:35.398 -07 000000482 INF: Y Motor: After move to 61.572609, error = -0.007668, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:38:35.398 -07 000000482 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:38:35.398 -07 000000482 INF: Y Motor: Moved to 61.5649 after 1768 ms (table move)
17-03-17 19:38:35.408 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139863 mm (DAC = 30553)
17-03-17 19:38:35.408 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:35.408 -07 000000623 INF: FPGA: Recv ZSGSRD 31068
17-03-17 19:38:35.418 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:38:35.418 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:35.418 -07 000000541 INF: FPGA: Recv ZSGSRD 31063
17-03-17 19:38:35.428 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:35.428 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:35.428 -07 000000482 INF: FPGA: Recv ZSGSRD 31066
17-03-17 19:38:35.438 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:35.438 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:35.438 -07 000000541 INF: FPGA: Recv ZSGSRD 31068
17-03-17 19:38:35.448 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:35.448 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:35.448 -07 000000623 INF: FPGA: Recv ZSGSRD 31068
17-03-17 19:38:35.458 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:35.458 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:35.458 -07 000000623 INF: FPGA: Recv ZSGSRD 31059
17-03-17 19:38:35.468 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:35.468 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:35.468 -07 000000541 INF: FPGA: Recv ZSGSRD 31054
17-03-17 19:38:35.478 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:35.478 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:35.478 -07 000000623 INF: FPGA: Recv ZSGSRD 31056
17-03-17 19:38:35.488 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:35.488 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:35.488 -07 000000541 INF: FPGA: Recv ZSGSRD 31065
17-03-17 19:38:35.498 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:35.498 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:35.498 -07 000000482 INF: FPGA: Recv ZSGSRD 31066
17-03-17 19:38:35.508 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:35.508 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:35.508 -07 000000478 INF: FPGA: Recv ZPIEZORD 27026
17-03-17 19:38:35.518 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:35.518 -07 000000551 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.662 V. Piezo Error = -8.9 V.
17-03-17 19:38:35.518 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31063 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31066 (-139.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31054 (-139.0 uncal um), Max = 31068 (-139.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:38:35.518 -07 000000551 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31063, posNoise = 5, negNoise = 9
17-03-17 19:38:35.518 -07 000000551 INF: Z Motor: After move to -0.139863, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:35.518 -07 000000551 INF: Z Motor: Settle wait time = 1433 ms, measure time = 108 ms (allowed 150 ms), total time = 1541 ms
17-03-17 19:38:35.518 -07 000000551 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:38:35.568 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1933 ms
17-03-17 19:38:35.568 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:38:35.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:35.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:35.568 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:35.568 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:35.568 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:38:35.568 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:35.578 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:35.578 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:38:35.578 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:38:35.578 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:38:35.588 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:38:35.588 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:38:35.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:38:35.638 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 19:38:35.838 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 19:38:35.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 19:38:35.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:38:35.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 19:38:35.868 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:38:35.868 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 19:38:35.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:38:35.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:38:35.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:35.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:38:35.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:38:35.968 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:35.968 -07 000000478 INF: Autofocus start
17-03-17 19:38:35.968 -07 000000478 INF: MeasureProfile start
17-03-17 19:38:35.968 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:35.978 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:38:35.978 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:38:35.978 -07 000000478 INF: MeasureProfile done
17-03-17 19:38:35.978 -07 000000478 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:38:35.978 -07 000000478 INF: Autofocus finished
17-03-17 19:38:36.178 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:38:36.178 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:38:36.178 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56494140625, Z-position -0.139878653770656. ----------
17-03-17 19:38:36.178 -07 000000610 INF: Cycle	28	Tile	3	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:38:36.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29078, sync = True, waitForSettling = True)
17-03-17 19:38:36.188 -07 000000610 INF: Z Motor: Moving to -0.133111 mm, started at -0.139879 mm, distance = 6.77 um
17-03-17 19:38:36.188 -07 000000610 INF: FPGA: Xmit ZDACW 29078\n [Z Motor]
17-03-17 19:38:36.188 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:38:36.198 -07 000000610 INF: FPGA: 'ZDACW 29078' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:38:36.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:36.198 -07 000000626 INF: FPGA: Recv ZDACR 29078
17-03-17 19:38:36.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:36.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:38:36.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:36.358 -07 000000478 INF: FPGA: Recv ZSGSRD 30013
17-03-17 19:38:36.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:36.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:36.368 -07 000000623 INF: FPGA: Recv ZSGSRD 30011
17-03-17 19:38:36.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:36.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:36.378 -07 000000569 INF: FPGA: Recv ZSGSRD 30009
17-03-17 19:38:36.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:36.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:36.388 -07 000000551 INF: FPGA: Recv ZSGSRD 30012
17-03-17 19:38:36.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:36.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:36.398 -07 000000569 INF: FPGA: Recv ZSGSRD 29997
17-03-17 19:38:36.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:36.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:36.408 -07 000000551 INF: FPGA: Recv ZSGSRD 30014
17-03-17 19:38:36.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:36.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:36.418 -07 000000569 INF: FPGA: Recv ZSGSRD 30011
17-03-17 19:38:36.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:36.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:36.428 -07 000000551 INF: FPGA: Recv ZSGSRD 30009
17-03-17 19:38:36.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:36.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:36.438 -07 000000608 INF: FPGA: Recv ZSGSRD 30012
17-03-17 19:38:36.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:36.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:36.448 -07 000000482 INF: FPGA: Recv ZSGSRD 30006
17-03-17 19:38:36.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:36.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:36.458 -07 000000608 INF: FPGA: Recv ZPIEZORD 25639
17-03-17 19:38:36.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:36.468 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.437 V. Piezo Error = -9.6 V.
17-03-17 19:38:36.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30009 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30011 (-132.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29997 (-132.2 uncal um), Max = 30014 (-132.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 19:38:36.468 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30009, posNoise = 5, negNoise = 12
17-03-17 19:38:36.468 -07 000000610 INF: Z Motor: After move to -0.133111, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:36.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:38:36.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:36.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:36.468 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:36.468 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:36.468 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:38:36.468 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:38:36.468 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:38:36.468 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:36.468 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:38:36.468 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:38:36.468 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:36.468 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:38:36.478 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:38:36.478 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:38:36.478 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:38:36.478 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:38:36.488 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:38:36.488 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:38:36.488 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:38:36.488 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:38:36.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 29254 150\n [Camera]
17-03-17 19:38:36.688 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:38:36.708 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:38:36.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:38:37.038 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.003063,
17-03-17 19:38:37.088 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:38:37.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:38:37.088 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:37.088 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:37.088 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2482896656, 0x0, 391868352) start.
17-03-17 19:38:37.088 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:38:37.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:38:37.098 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:37.098 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:37.098 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:38:37.278 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29254 788
17-03-17 19:38:37.438 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:38:37.488 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2482896656, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:38:37.488 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:38:37.488 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:37.488 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:38:37.488 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:38:37.488 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:37.488 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:38:37.488 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:38:37.498 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:37.498 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:38:37.628 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:38:37.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:38:37.628 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:37.738 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:37.738 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:38:37.748 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:38:37.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:38:37.748 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:37.748 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:37.748 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:38:37.818 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1324
17-03-17 19:38:37.818 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:38:37.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 29254 150' command took 2 ms to send, 1325 ms to get response, and 1332 ms overall
17-03-17 19:38:37.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:38:37.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56494140625, Z-Position -0.13310753417324. ------
17-03-17 19:38:37.828 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:37.828 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13953 mm
17-03-17 19:38:37.828 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:38:37.828 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:38:37.828 -07 000000626 INF: Y Motor: Moving to 62.4026 mm, started at 61.5649 mm, delta = 0.8377 mm
17-03-17 19:38:37.838 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:38.148 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 19:38:38.148 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:38:38.148 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:38.148 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 19:38:38.148 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:38:38.148 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:38.158 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:38.158 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:38:38.158 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-17 19:38:38.158 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:38:38.168 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:38.168 -07 000000547 INF: FPGA: Recv YRDPOS 126085
17-03-17 19:38:38.168 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 325 ms to get response, and 341 ms overall
17-03-17 19:38:38.168 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 335 ms to get response, and 345 ms overall
17-03-17 19:38:38.168 -07 000000626 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:38.168 -07 000000626 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:38:38.168 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:38:38.168 -07 000000626 INF: Y Motor: Moving 1340 steps-17
17-03-17 19:38:38.168 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 30480, sync = True, waitForSettling = False)
17-03-17 19:38:38.168 -07 000000547 INF: Z Motor: Moving to -0.139528 mm, started at -0.133108 mm, distance = -6.42 um
17-03-17 19:38:38.178 -07 000000547 INF: FPGA: Xmit ZDACW 30480\n [Z Motor]
17-03-17 19:38:38.178 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:38:38.188 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:38:38.188 -07 000000547 INF: FPGA: 'ZDACW 30480' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:38:38.198 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:38.198 -07 000000551 INF: FPGA: Recv ZDACR 30480
17-03-17 19:38:38.208 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:38:38.208 -07 000000547 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 19:38:38.368 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:38:38.368 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 203 ms overall
17-03-17 19:38:38.558 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 19:38:38.558 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 19:38:38.598 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:38.598 -07 000000551 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:38:38.608 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:38:38.608 -07 000000626 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:38.608 -07 000000626 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:38:38.608 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.838 mm, average velocity = 2.142 mm/sec
17-03-17 19:38:39.558 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:39.558 -07 000000478 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:38:39.568 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:39.568 -07 000000626 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:39.578 -07 000000626 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:38:39.578 -07 000000626 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:38:39.578 -07 000000626 INF: Y Motor: Moved to 62.3960 after 1755 ms (table move)
17-03-17 19:38:39.588 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139528 mm (DAC = 30480)
17-03-17 19:38:39.588 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:39.588 -07 000000551 INF: FPGA: Recv ZSGSRD 31015
17-03-17 19:38:39.598 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:38:39.598 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:39.598 -07 000000478 INF: FPGA: Recv ZSGSRD 31003
17-03-17 19:38:39.608 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:39.608 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:39.608 -07 000000547 INF: FPGA: Recv ZSGSRD 31012
17-03-17 19:38:39.618 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:39.618 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:39.618 -07 000000547 INF: FPGA: Recv ZSGSRD 31010
17-03-17 19:38:39.628 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:39.628 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:39.628 -07 000000551 INF: FPGA: Recv ZSGSRD 31011
17-03-17 19:38:39.638 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:39.638 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:39.638 -07 000000547 INF: FPGA: Recv ZSGSRD 31005
17-03-17 19:38:39.648 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:39.648 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:39.648 -07 000000551 INF: FPGA: Recv ZSGSRD 31006
17-03-17 19:38:39.658 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:39.658 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:39.658 -07 000000551 INF: FPGA: Recv ZSGSRD 31006
17-03-17 19:38:39.668 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:39.668 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:39.668 -07 000000547 INF: FPGA: Recv ZSGSRD 31009
17-03-17 19:38:39.678 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:39.678 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:39.678 -07 000000547 INF: FPGA: Recv ZSGSRD 31007
17-03-17 19:38:39.688 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:39.688 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:39.688 -07 000000551 INF: FPGA: Recv ZPIEZORD 26965
17-03-17 19:38:39.698 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:39.698 -07 000000482 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.651 V. Piezo Error = -8.9 V.
17-03-17 19:38:39.698 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31008 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31008 (-138.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31003 (-138.7 uncal um), Max = 31015 (-138.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:38:39.698 -07 000000482 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31008, posNoise = 7, negNoise = 5
17-03-17 19:38:39.698 -07 000000482 INF: Z Motor: After move to -0.139528, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:39.698 -07 000000482 INF: Z Motor: Settle wait time = 1415 ms, measure time = 108 ms (allowed 150 ms), total time = 1523 ms
17-03-17 19:38:39.698 -07 000000482 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:38:39.748 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1919 ms
17-03-17 19:38:39.748 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:38:39.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:39.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:39.748 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:39.748 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:39.748 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:38:39.748 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:39.748 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:39.748 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:38:39.758 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:38:39.758 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:38:39.768 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:38:39.768 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:38:39.768 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:38:39.808 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:38:40.008 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:38:40.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:38:40.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:38:40.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:38:40.048 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:38:40.048 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:38:40.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 19:38:40.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:38:40.128 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:40.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:38:40.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 19:38:40.148 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:40.148 -07 000000482 INF: Autofocus start
17-03-17 19:38:40.148 -07 000000482 INF: MeasureProfile start
17-03-17 19:38:40.148 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:40.158 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:38:40.158 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:38:40.168 -07 000000482 INF: MeasureProfile done
17-03-17 19:38:40.168 -07 000000482 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 19:38:40.168 -07 000000482 INF: Autofocus finished
17-03-17 19:38:40.358 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:38:40.358 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:38:40.358 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.139525322102859. ----------
17-03-17 19:38:40.368 -07 000000610 INF: Cycle	28	Tile	4	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:38:40.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28958, sync = True, waitForSettling = True)
17-03-17 19:38:40.368 -07 000000610 INF: Z Motor: Moving to -0.132561 mm, started at -0.139525 mm, distance = 6.96 um
17-03-17 19:38:40.368 -07 000000610 INF: FPGA: Xmit ZDACW 28958\n [Z Motor]
17-03-17 19:38:40.368 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:38:40.378 -07 000000610 INF: FPGA: 'ZDACW 28958' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:38:40.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:40.378 -07 000000431 INF: FPGA: Recv ZDACR 28958
17-03-17 19:38:40.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:40.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:38:40.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:40.538 -07 000000593 INF: FPGA: Recv ZSGSRD 29928
17-03-17 19:38:40.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:40.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:40.548 -07 000000626 INF: FPGA: Recv ZSGSRD 29927
17-03-17 19:38:40.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:40.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:40.558 -07 000000551 INF: FPGA: Recv ZSGSRD 29921
17-03-17 19:38:40.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:40.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:40.568 -07 000000547 INF: FPGA: Recv ZSGSRD 29921
17-03-17 19:38:40.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:40.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:40.578 -07 000000512 INF: FPGA: Recv ZSGSRD 29923
17-03-17 19:38:40.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:40.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:40.588 -07 000000501 INF: FPGA: Recv ZSGSRD 29923
17-03-17 19:38:40.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:40.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:40.598 -07 000000431 INF: FPGA: Recv ZSGSRD 29928
17-03-17 19:38:40.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:40.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:40.608 -07 000000501 INF: FPGA: Recv ZSGSRD 29922
17-03-17 19:38:40.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:40.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:40.618 -07 000000482 INF: FPGA: Recv ZSGSRD 29929
17-03-17 19:38:40.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:40.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:40.628 -07 000000482 INF: FPGA: Recv ZSGSRD 29928
17-03-17 19:38:40.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:40.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:40.638 -07 000000626 INF: FPGA: Recv ZPIEZORD 25582
17-03-17 19:38:40.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:40.648 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.419 V. Piezo Error = -9.5 V.
17-03-17 19:38:40.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29925 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29925 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29921 (-131.8 uncal um), Max = 29929 (-131.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:38:40.648 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29925, posNoise = 4, negNoise = 4
17-03-17 19:38:40.648 -07 000000610 INF: Z Motor: After move to -0.132561, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:40.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:38:40.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:40.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:40.648 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:40.648 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:40.648 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:38:40.648 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:38:40.648 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:38:40.648 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:40.648 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:38:40.648 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:38:40.658 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:40.658 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:38:40.658 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:38:40.658 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:38:40.658 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:38:40.658 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:38:40.668 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:38:40.668 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:38:40.668 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:38:40.668 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:38:40.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 29134 150\n [Camera]
17-03-17 19:38:40.868 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:38:41.268 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:38:41.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:38:41.268 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:41.268 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:41.268 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) start.
17-03-17 19:38:41.278 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:38:41.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:38:41.278 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:41.278 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:41.278 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) start.
17-03-17 19:38:41.468 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29134 788
17-03-17 19:38:41.618 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:38:41.648 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:38:41.648 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:38:41.648 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:41.648 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:38:41.648 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:38:41.648 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:41.658 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:38:41.658 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:38:41.658 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:38:41.658 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:38:41.778 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:38:41.778 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:38:41.808 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:38:41.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:38:41.808 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:41.808 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:38:41.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:38:41.808 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:41.808 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:41.808 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:38:41.818 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:41.818 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:38:41.998 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1324
17-03-17 19:38:41.998 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:38:41.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 29134 150' command took 2 ms to send, 1326 ms to get response, and 1331 ms overall
17-03-17 19:38:41.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:38:41.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.132567900353332. ------
17-03-17 19:38:42.008 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:42.008 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13888 mm
17-03-17 19:38:42.008 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:38:42.008 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:42.008 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:38:42.008 -07 000000608 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 19:38:42.008 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 30339, sync = True, waitForSettling = False)
17-03-17 19:38:42.008 -07 000000547 INF: Z Motor: Moving to -0.138883 mm, started at -0.132568 mm, distance = -6.32 um
17-03-17 19:38:42.018 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:38:42.018 -07 000000547 INF: FPGA: Xmit ZDACW 30339\n [Z Motor]
17-03-17 19:38:42.018 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:38:42.028 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:38:42.028 -07 000000547 INF: FPGA: 'ZDACW 30339' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:42.038 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:42.038 -07 000000623 INF: FPGA: Recv YRDPOS 127788
17-03-17 19:38:42.048 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 19:38:42.048 -07 000000608 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:42.048 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:42.048 -07 000000593 INF: FPGA: Recv ZDACR 30339
17-03-17 19:38:42.048 -07 000000608 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:38:42.048 -07 000000608 INF: Y Motor: Moving 1338 steps-14
17-03-17 19:38:42.058 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:38:42.058 -07 000000547 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 19:38:42.058 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:38:42.198 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:38:42.198 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:38:42.198 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:42.198 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:38:42.198 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:38:42.198 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:42.208 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:42.208 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:38:42.208 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:38:42.208 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:38:42.228 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:38:42.228 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 19:38:42.408 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.99219,
17-03-17 19:38:42.438 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:38:42.438 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 388 ms overall
17-03-17 19:38:42.468 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:42.468 -07 000000551 INF: FPGA: Recv YRDPOS 129484
17-03-17 19:38:42.478 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:38:42.478 -07 000000608 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:42.478 -07 000000608 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:38:42.478 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.837 mm, average velocity = 2.156 mm/sec
17-03-17 19:38:43.428 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:43.428 -07 000000486 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:38:43.438 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:43.438 -07 000000608 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:43.458 -07 000000608 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:38:43.458 -07 000000608 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:38:43.458 -07 000000608 INF: Y Motor: Moved to 63.2251 after 1443 ms (table move)
17-03-17 19:38:43.458 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138883 mm (DAC = 30339)
17-03-17 19:38:43.458 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:43.458 -07 000000431 INF: FPGA: Recv ZSGSRD 30903
17-03-17 19:38:43.468 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:38:43.468 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:43.468 -07 000000551 INF: FPGA: Recv ZSGSRD 30901
17-03-17 19:38:43.478 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:43.478 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:43.478 -07 000000486 INF: FPGA: Recv ZSGSRD 30906
17-03-17 19:38:43.488 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:43.488 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:43.488 -07 000000551 INF: FPGA: Recv ZSGSRD 30919
17-03-17 19:38:43.498 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:43.498 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:43.498 -07 000000608 INF: FPGA: Recv ZSGSRD 30915
17-03-17 19:38:43.508 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:43.508 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:43.508 -07 000000551 INF: FPGA: Recv ZSGSRD 30912
17-03-17 19:38:43.518 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:43.518 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:43.518 -07 000000551 INF: FPGA: Recv ZSGSRD 30909
17-03-17 19:38:43.528 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:43.528 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:43.528 -07 000000551 INF: FPGA: Recv ZSGSRD 30908
17-03-17 19:38:43.538 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:43.538 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:43.538 -07 000000608 INF: FPGA: Recv ZSGSRD 30907
17-03-17 19:38:43.548 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:43.548 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:43.548 -07 000000486 INF: FPGA: Recv ZSGSRD 30909
17-03-17 19:38:43.558 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:43.558 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:43.558 -07 000000551 INF: FPGA: Recv ZPIEZORD 26887
17-03-17 19:38:43.568 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:43.568 -07 000000501 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -8.9 V.
17-03-17 19:38:43.568 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30909 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30908 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30901 (-138.0 uncal um), Max = 30919 (-138.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:38:43.568 -07 000000501 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30909, posNoise = 10, negNoise = 8
17-03-17 19:38:43.568 -07 000000501 INF: Z Motor: After move to -0.138883, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:43.568 -07 000000501 INF: Z Motor: Settle wait time = 1445 ms, measure time = 106 ms (allowed 150 ms), total time = 1551 ms
17-03-17 19:38:43.568 -07 000000501 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:38:43.618 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 19:38:43.618 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:38:43.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:43.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:43.618 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:43.618 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:43.618 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:38:43.618 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:43.618 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:43.618 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:38:43.628 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:38:43.628 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:38:43.638 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:38:43.638 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:38:43.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:38:43.688 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:38:43.888 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:38:43.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:38:43.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:38:43.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:38:43.928 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:38:43.928 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:38:43.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 19:38:44.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 19:38:44.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:44.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:38:44.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 19:38:44.038 -07 000000475 INF: Autofocus start
17-03-17 19:38:44.038 -07 000000475 INF: MeasureProfile start
17-03-17 19:38:44.038 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:44.048 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:44.048 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:38:44.048 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:38:44.058 -07 000000475 INF: MeasureProfile done
17-03-17 19:38:44.058 -07 000000475 INF: X=48  Z correction [um]=0.2069503
17-03-17 19:38:44.058 -07 000000475 INF: Autofocus finished
17-03-17 19:38:44.248 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:38:44.248 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:38:44.248 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.138889325100824. ----------
17-03-17 19:38:44.248 -07 000000610 INF: Cycle	28	Tile	5	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:38:44.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28897, sync = True, waitForSettling = True)
17-03-17 19:38:44.258 -07 000000610 INF: Z Motor: Moving to -0.132282 mm, started at -0.138889 mm, distance = 6.61 um
17-03-17 19:38:44.258 -07 000000610 INF: FPGA: Xmit ZDACW 28897\n [Z Motor]
17-03-17 19:38:44.258 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:38:44.268 -07 000000610 INF: FPGA: 'ZDACW 28897' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:38:44.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:44.268 -07 000000569 INF: FPGA: Recv ZDACR 28897
17-03-17 19:38:44.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:44.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:38:44.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:44.428 -07 000000501 INF: FPGA: Recv ZSGSRD 29885
17-03-17 19:38:44.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:44.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:44.438 -07 000000541 INF: FPGA: Recv ZSGSRD 29885
17-03-17 19:38:44.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:44.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:44.448 -07 000000551 INF: FPGA: Recv ZSGSRD 29879
17-03-17 19:38:44.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:44.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:44.458 -07 000000541 INF: FPGA: Recv ZSGSRD 29878
17-03-17 19:38:44.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:44.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:44.468 -07 000000501 INF: FPGA: Recv ZSGSRD 29883
17-03-17 19:38:44.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:38:44.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:44.478 -07 000000551 INF: FPGA: Recv ZSGSRD 29878
17-03-17 19:38:44.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:44.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:44.488 -07 000000501 INF: FPGA: Recv ZSGSRD 29883
17-03-17 19:38:44.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:44.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:44.498 -07 000000608 INF: FPGA: Recv ZSGSRD 29881
17-03-17 19:38:44.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:44.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:44.508 -07 000000475 INF: FPGA: Recv ZSGSRD 29884
17-03-17 19:38:44.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:44.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:44.518 -07 000000551 INF: FPGA: Recv ZSGSRD 29876
17-03-17 19:38:44.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:44.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:44.528 -07 000000501 INF: FPGA: Recv ZPIEZORD 25545
17-03-17 19:38:44.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:44.538 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.409 V. Piezo Error = -9.5 V.
17-03-17 19:38:44.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29881 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29882 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29876 (-131.5 uncal um), Max = 29885 (-131.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:38:44.538 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29881, posNoise = 4, negNoise = 5
17-03-17 19:38:44.538 -07 000000610 INF: Z Motor: After move to -0.132282, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:44.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:38:44.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:44.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:44.538 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:38:44.538 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:38:44.538 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:44.538 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:44.538 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:38:44.538 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:44.538 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:38:44.538 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:38:44.538 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:38:44.538 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:38:44.548 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:38:44.548 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:38:44.548 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:38:44.548 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:38:44.558 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:38:44.558 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:38:44.558 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:38:44.558 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:38:44.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 29074 150\n [Camera]
17-03-17 19:38:44.758 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:38:45.158 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:38:45.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:38:45.158 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:45.158 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:45.158 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) start.
17-03-17 19:38:45.158 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:38:45.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:38:45.168 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:45.168 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:45.168 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) start.
17-03-17 19:38:45.348 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29074 788
17-03-17 19:38:45.498 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:38:45.538 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:38:45.538 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:38:45.538 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:45.538 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:38:45.548 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:38:45.548 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:45.548 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:38:45.548 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:38:45.548 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:38:45.558 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:38:45.698 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:38:45.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:38:45.698 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:45.818 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:45.818 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:38:45.818 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:38:45.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:38:45.818 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:45.818 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:45.818 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:38:45.888 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:38:45.888 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:38:45.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 29074 150' command took 2 ms to send, 1325 ms to get response, and 1331 ms overall
17-03-17 19:38:45.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:38:45.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.132285235019094. ------
17-03-17 19:38:45.898 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:45.898 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13876 mm
17-03-17 19:38:45.898 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:38:45.898 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:38:45.898 -07 000000475 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 19:38:45.898 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:45.898 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30312, sync = True, waitForSettling = False)
17-03-17 19:38:45.898 -07 000000462 INF: Z Motor: Moving to -0.138759 mm, started at -0.132285 mm, distance = -6.47 um
17-03-17 19:38:45.908 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:38:45.908 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:45.908 -07 000000569 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:38:45.918 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:38:45.918 -07 000000475 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:45.918 -07 000000475 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:38:45.918 -07 000000475 INF: Y Motor: Moving 1340 steps-16
17-03-17 19:38:45.918 -07 000000462 INF: FPGA: Xmit ZDACW 30312\n [Z Motor]
17-03-17 19:38:45.918 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:38:45.928 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:38:45.928 -07 000000462 INF: FPGA: 'ZDACW 30312' command took 3 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:38:45.938 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:38:45.948 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:45.948 -07 000000482 INF: FPGA: Recv ZDACR 30312
17-03-17 19:38:45.958 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:38:45.958 -07 000000462 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 19:38:46.128 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:38:46.128 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:38:46.218 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:38:46.218 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:38:46.218 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:46.218 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:38:46.218 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:38:46.218 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:46.218 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:46.218 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:38:46.218 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 19:38:46.228 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 19:38:46.308 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 19:38:46.308 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:38:46.348 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:46.348 -07 000000551 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:38:46.358 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:38:46.358 -07 000000475 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:46.358 -07 000000475 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 19:38:46.358 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 19:38:46.708 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:38:46.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:38:47.308 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:47.308 -07 000000501 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:38:47.318 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:47.318 -07 000000475 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:47.328 -07 000000475 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:38:47.328 -07 000000475 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:38:47.328 -07 000000475 INF: Y Motor: Moved to 64.0576 after 1432 ms (table move)
17-03-17 19:38:47.338 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138759 mm (DAC = 30312)
17-03-17 19:38:47.338 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:47.338 -07 000000431 INF: FPGA: Recv ZSGSRD 30888
17-03-17 19:38:47.348 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:47.348 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:47.348 -07 000000623 INF: FPGA: Recv ZSGSRD 30893
17-03-17 19:38:47.358 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:47.358 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:47.358 -07 000000547 INF: FPGA: Recv ZSGSRD 30889
17-03-17 19:38:47.368 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:47.368 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:47.368 -07 000000623 INF: FPGA: Recv ZSGSRD 30897
17-03-17 19:38:47.378 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:47.378 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:47.378 -07 000000482 INF: FPGA: Recv ZSGSRD 30898
17-03-17 19:38:47.388 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:47.388 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:47.388 -07 000000482 INF: FPGA: Recv ZSGSRD 30894
17-03-17 19:38:47.398 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:38:47.398 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:47.398 -07 000000547 INF: FPGA: Recv ZSGSRD 30888
17-03-17 19:38:47.408 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:47.408 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:47.408 -07 000000482 INF: FPGA: Recv ZSGSRD 30886
17-03-17 19:38:47.418 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:47.418 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:47.418 -07 000000482 INF: FPGA: Recv ZSGSRD 30893
17-03-17 19:38:47.428 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:47.428 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:47.428 -07 000000623 INF: FPGA: Recv ZSGSRD 30890
17-03-17 19:38:47.438 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:47.438 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:47.438 -07 000000547 INF: FPGA: Recv ZPIEZORD 26892
17-03-17 19:38:47.448 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:47.448 -07 000000541 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.625 V. Piezo Error = -8.8 V.
17-03-17 19:38:47.448 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30892 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30892 (-138.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30886 (-137.9 uncal um), Max = 30898 (-138.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:38:47.448 -07 000000541 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30892, posNoise = 6, negNoise = 6
17-03-17 19:38:47.448 -07 000000541 INF: Z Motor: After move to -0.138759, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:47.448 -07 000000541 INF: Z Motor: Settle wait time = 1434 ms, measure time = 110 ms (allowed 150 ms), total time = 1544 ms
17-03-17 19:38:47.448 -07 000000541 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 19:38:47.488 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 19:38:47.488 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:38:47.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:47.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:47.488 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:47.488 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:47.488 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:38:47.488 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:47.488 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:38:47.488 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:38:47.498 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:38:47.498 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:38:47.508 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:38:47.508 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:38:47.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:38:47.558 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:38:47.758 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:38:47.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:38:47.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:38:47.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:38:47.778 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.990831,
17-03-17 19:38:47.798 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:38:47.798 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 19:38:47.798 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 19:38:47.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:38:47.878 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:47.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:38:47.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:38:47.898 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:47.898 -07 000000626 INF: Autofocus start
17-03-17 19:38:47.898 -07 000000626 INF: MeasureProfile start
17-03-17 19:38:47.898 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:47.908 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:38:47.908 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:38:47.908 -07 000000626 INF: MeasureProfile done
17-03-17 19:38:47.908 -07 000000626 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:38:47.908 -07 000000626 INF: Autofocus finished
17-03-17 19:38:48.108 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:38:48.108 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 19:38:48.118 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.138780113494414. ----------
17-03-17 19:38:48.118 -07 000000610 INF: Cycle	28	Tile	6	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:38:48.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28819, sync = True, waitForSettling = True)
17-03-17 19:38:48.118 -07 000000610 INF: Z Motor: Moving to -0.131925 mm, started at -0.138780 mm, distance = 6.86 um
17-03-17 19:38:48.138 -07 000000610 INF: FPGA: Xmit ZDACW 28819\n [Z Motor]
17-03-17 19:38:48.138 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:38:48.148 -07 000000610 INF: FPGA: 'ZDACW 28819' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:38:48.148 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:48.148 -07 000000547 INF: FPGA: Recv ZDACR 28819
17-03-17 19:38:48.158 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:48.158 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:38:48.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:48.308 -07 000000541 INF: FPGA: Recv ZSGSRD 29829
17-03-17 19:38:48.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:48.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:48.318 -07 000000475 INF: FPGA: Recv ZSGSRD 29822
17-03-17 19:38:48.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:48.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:48.328 -07 000000541 INF: FPGA: Recv ZSGSRD 29822
17-03-17 19:38:48.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:48.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:48.338 -07 000000475 INF: FPGA: Recv ZSGSRD 29820
17-03-17 19:38:48.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:48.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:48.348 -07 000000541 INF: FPGA: Recv ZSGSRD 29823
17-03-17 19:38:48.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:48.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:48.358 -07 000000475 INF: FPGA: Recv ZSGSRD 29828
17-03-17 19:38:48.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:48.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:48.368 -07 000000541 INF: FPGA: Recv ZSGSRD 29825
17-03-17 19:38:48.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:48.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:48.378 -07 000000626 INF: FPGA: Recv ZSGSRD 29830
17-03-17 19:38:48.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:48.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:48.388 -07 000000541 INF: FPGA: Recv ZSGSRD 29823
17-03-17 19:38:48.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:48.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:48.398 -07 000000623 INF: FPGA: Recv ZSGSRD 29829
17-03-17 19:38:48.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:48.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:48.408 -07 000000541 INF: FPGA: Recv ZPIEZORD 25501
17-03-17 19:38:48.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:48.418 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -9.5 V.
17-03-17 19:38:48.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29825 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29824 (-131.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29820 (-131.1 uncal um), Max = 29830 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:38:48.418 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29825, posNoise = 5, negNoise = 5
17-03-17 19:38:48.418 -07 000000610 INF: Z Motor: After move to -0.131925, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:48.418 -07 000000610 INF: Z Motor: MoveAbsStepped took 298 ms)
17-03-17 19:38:48.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:48.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:48.418 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:48.418 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:48.418 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:38:48.418 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:48.418 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:38:48.418 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:38:48.418 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:48.418 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:38:48.428 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:38:48.428 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:38:48.428 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:38:48.428 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:38:48.428 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:38:48.428 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:38:48.438 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:38:48.438 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:38:48.438 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:38:48.438 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:38:48.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 28996 150\n [Camera]
17-03-17 19:38:48.638 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:38:49.048 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:38:49.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:38:49.048 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:49.048 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:49.048 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) start.
17-03-17 19:38:49.048 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:38:49.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:38:49.048 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:49.048 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:49.048 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) start.
17-03-17 19:38:49.238 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28996 791
17-03-17 19:38:49.388 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:38:49.538 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) end. Duration was 493 ms.
17-03-17 19:38:49.538 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 494 ms.
17-03-17 19:38:49.538 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:49.538 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) end. Duration was 491 ms.
17-03-17 19:38:49.538 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 492 ms.
17-03-17 19:38:49.538 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:49.548 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:38:49.548 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 499 ms.
17-03-17 19:38:49.548 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:38:49.548 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 504 ms.
17-03-17 19:38:49.578 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:38:49.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:38:49.578 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:49.588 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:38:49.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:38:49.588 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:49.588 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:49.588 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:38:49.588 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:49.588 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:38:49.768 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1324
17-03-17 19:38:49.768 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:38:49.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 28996 150' command took 2 ms to send, 1329 ms to get response, and 1331 ms overall
17-03-17 19:38:49.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:38:49.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.131925479139156. ------
17-03-17 19:38:49.778 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:49.778 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13851 mm
17-03-17 19:38:49.778 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:38:49.778 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:49.788 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:38:49.788 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:38:49.788 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:38:49.788 -07 000000462 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 19:38:49.788 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30257, sync = True, waitForSettling = False)
17-03-17 19:38:49.788 -07 000000486 INF: Z Motor: Moving to -0.138508 mm, started at -0.131925 mm, distance = -6.58 um
17-03-17 19:38:49.798 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:49.798 -07 000000608 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:38:49.808 -07 000000486 INF: FPGA: Xmit ZDACW 30257\n [Z Motor]
17-03-17 19:38:49.808 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:38:49.808 -07 000000462 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:49.808 -07 000000462 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:38:49.808 -07 000000462 INF: Y Motor: Moving 1336 steps-11
17-03-17 19:38:49.808 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:38:49.818 -07 000000486 INF: FPGA: 'ZDACW 30257' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:38:49.818 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:49.818 -07 000000475 INF: FPGA: Recv ZDACR 30257
17-03-17 19:38:49.828 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:38:49.828 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:49.828 -07 000000486 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:38:49.968 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:38:49.968 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:38:49.968 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:49.968 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:38:49.968 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:38:49.968 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:49.968 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:49.978 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:38:49.978 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:38:49.978 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:38:49.988 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:38:49.988 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:38:50.198 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 19:38:50.198 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:38:50.238 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:50.238 -07 000000608 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:38:50.248 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:50.248 -07 000000462 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:50.248 -07 000000462 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:38:50.248 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.103 mm/sec
17-03-17 19:38:51.198 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:51.198 -07 000000475 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:38:51.208 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:51.208 -07 000000462 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:51.228 -07 000000462 INF: Y Motor: After move to 64.892609, error = -0.012726, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:38:51.228 -07 000000462 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:38:51.228 -07 000000462 INF: Y Motor: Moved to 64.8799 after 1439 ms (table move)
17-03-17 19:38:51.228 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138508 mm (DAC = 30257)
17-03-17 19:38:51.228 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:51.228 -07 000000462 INF: FPGA: Recv ZSGSRD 30848
17-03-17 19:38:51.238 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:38:51.238 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:51.238 -07 000000462 INF: FPGA: Recv ZSGSRD 30846
17-03-17 19:38:51.248 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:51.248 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:51.248 -07 000000462 INF: FPGA: Recv ZSGSRD 30849
17-03-17 19:38:51.258 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:51.258 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:51.258 -07 000000547 INF: FPGA: Recv ZSGSRD 30852
17-03-17 19:38:51.268 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:51.268 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:51.268 -07 000000478 INF: FPGA: Recv ZSGSRD 30850
17-03-17 19:38:51.278 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:51.278 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:51.278 -07 000000547 INF: FPGA: Recv ZSGSRD 30855
17-03-17 19:38:51.288 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:51.288 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:51.288 -07 000000547 INF: FPGA: Recv ZSGSRD 30853
17-03-17 19:38:51.298 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:51.298 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:51.298 -07 000000547 INF: FPGA: Recv ZSGSRD 30852
17-03-17 19:38:51.308 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:51.308 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:51.308 -07 000000486 INF: FPGA: Recv ZSGSRD 30846
17-03-17 19:38:51.318 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:51.318 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:51.318 -07 000000486 INF: FPGA: Recv ZSGSRD 30847
17-03-17 19:38:51.328 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:51.328 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:51.328 -07 000000547 INF: FPGA: Recv ZPIEZORD 26837
17-03-17 19:38:51.338 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:51.338 -07 000000482 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.617 V. Piezo Error = -8.8 V.
17-03-17 19:38:51.338 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30850 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30850 (-137.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30846 (-137.7 uncal um), Max = 30855 (-137.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:38:51.338 -07 000000482 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30850, posNoise = 5, negNoise = 4
17-03-17 19:38:51.338 -07 000000482 INF: Z Motor: After move to -0.138508, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:51.338 -07 000000482 INF: Z Motor: Settle wait time = 1442 ms, measure time = 105 ms (allowed 150 ms), total time = 1547 ms
17-03-17 19:38:51.338 -07 000000482 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:38:51.388 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 19:38:51.388 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:38:51.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:51.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:51.388 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:51.388 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:51.388 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:38:51.388 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:51.388 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:51.388 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:38:51.398 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:38:51.398 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:38:51.408 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:38:51.408 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:38:51.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:38:51.458 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:38:51.658 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:38:51.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:38:51.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:38:51.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:38:51.688 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:38:51.698 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 19:38:51.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:38:51.708 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:38:51.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 19:38:51.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:51.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:38:51.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:38:51.788 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:38:51.798 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:51.798 -07 000000547 INF: Autofocus start
17-03-17 19:38:51.798 -07 000000547 INF: MeasureProfile start
17-03-17 19:38:51.798 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:51.808 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:38:51.808 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:38:51.808 -07 000000547 INF: MeasureProfile done
17-03-17 19:38:51.808 -07 000000547 INF: X=12  Z correction [um]=0.03377635
17-03-17 19:38:51.808 -07 000000547 INF: Autofocus finished
17-03-17 19:38:52.008 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:38:52.008 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:38:52.008 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8798828125, Z-position -0.138510296584461. ----------
17-03-17 19:38:52.008 -07 000000610 INF: Cycle	28	Tile	7	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:38:52.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28777, sync = True, waitForSettling = True)
17-03-17 19:38:52.018 -07 000000610 INF: Z Motor: Moving to -0.131733 mm, started at -0.138510 mm, distance = 6.78 um
17-03-17 19:38:52.018 -07 000000610 INF: FPGA: Xmit ZDACW 28777\n [Z Motor]
17-03-17 19:38:52.018 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:38:52.028 -07 000000610 INF: FPGA: 'ZDACW 28777' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:38:52.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:52.028 -07 000000547 INF: FPGA: Recv ZDACR 28777
17-03-17 19:38:52.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:52.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:38:52.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:52.188 -07 000000547 INF: FPGA: Recv ZSGSRD 29800
17-03-17 19:38:52.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:52.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:52.198 -07 000000478 INF: FPGA: Recv ZSGSRD 29796
17-03-17 19:38:52.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:52.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:52.208 -07 000000547 INF: FPGA: Recv ZSGSRD 29792
17-03-17 19:38:52.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:52.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:52.218 -07 000000608 INF: FPGA: Recv ZSGSRD 29793
17-03-17 19:38:52.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:52.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:52.228 -07 000000547 INF: FPGA: Recv ZSGSRD 29797
17-03-17 19:38:52.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:52.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:52.238 -07 000000547 INF: FPGA: Recv ZSGSRD 29796
17-03-17 19:38:52.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:52.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:52.248 -07 000000478 INF: FPGA: Recv ZSGSRD 29790
17-03-17 19:38:52.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:52.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:52.258 -07 000000478 INF: FPGA: Recv ZSGSRD 29793
17-03-17 19:38:52.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:52.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:52.268 -07 000000478 INF: FPGA: Recv ZSGSRD 29796
17-03-17 19:38:52.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:52.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:52.278 -07 000000547 INF: FPGA: Recv ZSGSRD 29798
17-03-17 19:38:52.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:52.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:52.288 -07 000000608 INF: FPGA: Recv ZPIEZORD 25465
17-03-17 19:38:52.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:52.298 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.391 V. Piezo Error = -9.5 V.
17-03-17 19:38:52.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29795 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29796 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29790 (-130.9 uncal um), Max = 29800 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:38:52.298 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29795, posNoise = 5, negNoise = 5
17-03-17 19:38:52.298 -07 000000610 INF: Z Motor: After move to -0.131733, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:52.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:38:52.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:52.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:52.298 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:52.298 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:52.298 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:38:52.298 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:38:52.298 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:38:52.298 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:52.298 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:38:52.298 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:38:52.298 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:52.298 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:38:52.308 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:38:52.308 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:38:52.308 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:38:52.308 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:38:52.318 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:38:52.318 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:38:52.318 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:38:52.318 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:38:52.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 28954 150\n [Camera]
17-03-17 19:38:52.518 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:38:52.918 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:38:52.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:38:52.928 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:52.928 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:52.928 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:38:52.928 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:38:52.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:38:52.928 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:52.928 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:52.928 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:38:53.108 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28954 788
17-03-17 19:38:53.148 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.969015,
17-03-17 19:38:53.258 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:38:53.308 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:38:53.308 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:38:53.308 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:53.308 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:38:53.308 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:38:53.308 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:53.308 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:53.308 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:38:53.308 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:53.318 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:38:53.458 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:38:53.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:38:53.458 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:53.458 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:53.458 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:38:53.458 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:38:53.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:38:53.458 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:53.458 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:53.458 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:38:53.648 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1324
17-03-17 19:38:53.648 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:38:53.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 28954 150' command took 2 ms to send, 1325 ms to get response, and 1332 ms overall
17-03-17 19:38:53.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:38:53.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8798828125, Z-Position -0.131732752774903. ------
17-03-17 19:38:53.658 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13840 mm
17-03-17 19:38:53.658 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:38:53.658 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:53.658 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:38:53.658 -07 000000569 INF: Y Motor: Moving to 65.7226 mm, started at 64.8799 mm, delta = 0.8427 mm
17-03-17 19:38:53.658 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:53.658 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30234, sync = True, waitForSettling = False)
17-03-17 19:38:53.658 -07 000000593 INF: Z Motor: Moving to -0.138402 mm, started at -0.131733 mm, distance = -6.67 um
17-03-17 19:38:53.668 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:38:53.668 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:38:53.678 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:53.678 -07 000000512 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:38:53.688 -07 000000593 INF: FPGA: Xmit ZDACW 30234\n [Z Motor]
17-03-17 19:38:53.688 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:38:53.688 -07 000000569 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:53.688 -07 000000569 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:38:53.688 -07 000000569 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:38:53.688 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:38:53.698 -07 000000593 INF: FPGA: 'ZDACW 30234' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 19:38:53.698 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:38:53.708 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:53.708 -07 000000478 INF: FPGA: Recv ZDACR 30234
17-03-17 19:38:53.718 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:38:53.718 -07 000000593 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 19:38:53.848 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:38:53.848 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:38:53.848 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:53.848 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:38:53.848 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:38:53.848 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:53.848 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:38:53.848 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:38:53.848 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:38:53.858 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:38:53.868 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:38:53.868 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:38:54.068 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 19:38:54.068 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:38:54.108 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:54.108 -07 000000623 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:38:54.118 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:38:54.118 -07 000000569 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:54.118 -07 000000569 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:38:54.118 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.178 mm/sec
17-03-17 19:38:55.068 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:55.068 -07 000000593 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:38:55.078 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:55.078 -07 000000569 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:55.098 -07 000000569 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:38:55.098 -07 000000569 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:38:55.098 -07 000000569 INF: Y Motor: Moved to 65.7148 after 1436 ms (table move)
17-03-17 19:38:55.098 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138402 mm (DAC = 30234)
17-03-17 19:38:55.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:55.098 -07 000000569 INF: FPGA: Recv ZSGSRD 30834
17-03-17 19:38:55.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:38:55.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:55.108 -07 000000569 INF: FPGA: Recv ZSGSRD 30836
17-03-17 19:38:55.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:55.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:55.118 -07 000000623 INF: FPGA: Recv ZSGSRD 30832
17-03-17 19:38:55.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:55.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:55.128 -07 000000486 INF: FPGA: Recv ZSGSRD 30839
17-03-17 19:38:55.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:55.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:55.138 -07 000000593 INF: FPGA: Recv ZSGSRD 30829
17-03-17 19:38:55.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:55.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:55.148 -07 000000486 INF: FPGA: Recv ZSGSRD 30836
17-03-17 19:38:55.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:55.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:55.158 -07 000000593 INF: FPGA: Recv ZSGSRD 30835
17-03-17 19:38:55.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:55.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:55.168 -07 000000593 INF: FPGA: Recv ZSGSRD 30828
17-03-17 19:38:55.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:55.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:55.178 -07 000000593 INF: FPGA: Recv ZSGSRD 30836
17-03-17 19:38:55.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:55.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:55.188 -07 000000547 INF: FPGA: Recv ZSGSRD 30835
17-03-17 19:38:55.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:55.198 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:55.198 -07 000000486 INF: FPGA: Recv ZPIEZORD 26833
17-03-17 19:38:55.208 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:55.208 -07 000000431 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.613 V. Piezo Error = -8.8 V.
17-03-17 19:38:55.208 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30834 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30835 (-137.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30828 (-137.6 uncal um), Max = 30839 (-137.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:38:55.208 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30834, posNoise = 5, negNoise = 6
17-03-17 19:38:55.208 -07 000000431 INF: Z Motor: After move to -0.138402, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:55.208 -07 000000431 INF: Z Motor: Settle wait time = 1438 ms, measure time = 105 ms (allowed 150 ms), total time = 1543 ms
17-03-17 19:38:55.208 -07 000000431 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:38:55.258 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 19:38:55.258 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:38:55.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:55.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:55.258 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:55.258 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:55.258 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:38:55.258 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:55.258 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:38:55.258 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:38:55.268 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:38:55.268 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:38:55.278 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:38:55.278 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:38:55.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:38:55.328 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:38:55.528 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:38:55.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:38:55.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:38:55.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 19:38:55.558 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:38:55.568 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:38:55.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:38:55.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:38:55.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:55.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:38:55.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:38:55.668 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:55.668 -07 000000431 INF: Autofocus start
17-03-17 19:38:55.668 -07 000000431 INF: MeasureProfile start
17-03-17 19:38:55.668 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:55.678 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:38:55.678 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:38:55.678 -07 000000431 INF: MeasureProfile done
17-03-17 19:38:55.678 -07 000000431 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 19:38:55.678 -07 000000431 INF: Autofocus finished
17-03-17 19:38:55.878 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:38:55.878 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:38:55.878 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.138407509190192. ----------
17-03-17 19:38:55.878 -07 000000610 INF: Cycle	28	Tile	8	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:38:55.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28712, sync = True, waitForSettling = True)
17-03-17 19:38:55.888 -07 000000610 INF: Z Motor: Moving to -0.131435 mm, started at -0.138408 mm, distance = 6.97 um
17-03-17 19:38:55.888 -07 000000610 INF: FPGA: Xmit ZDACW 28712\n [Z Motor]
17-03-17 19:38:55.888 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:38:55.898 -07 000000610 INF: FPGA: 'ZDACW 28712' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:55.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:55.898 -07 000000593 INF: FPGA: Recv ZDACR 28712
17-03-17 19:38:55.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:55.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:38:56.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:56.058 -07 000000486 INF: FPGA: Recv ZSGSRD 29748
17-03-17 19:38:56.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:56.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:56.068 -07 000000486 INF: FPGA: Recv ZSGSRD 29754
17-03-17 19:38:56.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:56.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:56.078 -07 000000431 INF: FPGA: Recv ZSGSRD 29745
17-03-17 19:38:56.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:56.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:56.088 -07 000000593 INF: FPGA: Recv ZSGSRD 29744
17-03-17 19:38:56.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:56.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:56.098 -07 000000431 INF: FPGA: Recv ZSGSRD 29756
17-03-17 19:38:56.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:56.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:56.108 -07 000000593 INF: FPGA: Recv ZSGSRD 29748
17-03-17 19:38:56.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:56.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:56.118 -07 000000486 INF: FPGA: Recv ZSGSRD 29747
17-03-17 19:38:56.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:56.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:56.128 -07 000000547 INF: FPGA: Recv ZSGSRD 29747
17-03-17 19:38:56.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:56.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:56.138 -07 000000486 INF: FPGA: Recv ZSGSRD 29749
17-03-17 19:38:56.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:56.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:56.148 -07 000000593 INF: FPGA: Recv ZSGSRD 29757
17-03-17 19:38:56.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:56.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:56.158 -07 000000431 INF: FPGA: Recv ZPIEZORD 25412
17-03-17 19:38:56.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:56.168 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.381 V. Piezo Error = -9.5 V.
17-03-17 19:38:56.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29750 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29748 (-130.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29744 (-130.6 uncal um), Max = 29757 (-130.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:38:56.168 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29750, posNoise = 7, negNoise = 6
17-03-17 19:38:56.168 -07 000000610 INF: Z Motor: After move to -0.131435, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:56.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:38:56.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:56.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:56.168 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:56.168 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:56.168 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:38:56.168 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:38:56.168 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:38:56.168 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:56.168 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:38:56.168 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:38:56.168 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:56.168 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:38:56.168 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:38:56.178 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:38:56.178 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:38:56.178 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:38:56.178 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:38:56.188 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:38:56.188 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:38:56.188 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:38:56.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 28888 150\n [Camera]
17-03-17 19:38:56.388 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:38:56.708 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:38:56.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:38:56.788 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:38:56.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:38:56.788 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:56.788 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:56.788 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:38:56.798 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:38:56.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:38:56.798 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:56.798 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:56.798 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:38:56.988 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28888 788
17-03-17 19:38:57.138 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:38:57.168 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:38:57.168 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:38:57.168 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:57.168 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:38:57.178 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:38:57.178 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:57.178 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:57.178 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:38:57.178 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:38:57.178 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:38:57.328 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:38:57.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:38:57.328 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:38:57.328 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:38:57.328 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:38:57.328 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:38:57.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:38:57.328 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:38:57.328 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:38:57.328 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:38:57.528 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-17 19:38:57.528 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:38:57.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 28888 150' command took 2 ms to send, 1332 ms to get response, and 1336 ms overall
17-03-17 19:38:57.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:38:57.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.131443663228523. ------
17-03-17 19:38:57.528 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:57.538 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13769 mm
17-03-17 19:38:57.538 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:38:57.538 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:38:57.538 -07 000000593 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 19:38:57.538 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30077, sync = True, waitForSettling = False)
17-03-17 19:38:57.538 -07 000000626 INF: Z Motor: Moving to -0.137684 mm, started at -0.131444 mm, distance = -6.24 um
17-03-17 19:38:57.538 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:57.538 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:57.538 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 6 ms to get response, and 6 ms overall
17-03-17 19:38:57.538 -07 000000512 INF: FPGA: Recv YRDPOS 134585
17-03-17 19:38:57.548 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:38:57.548 -07 000000593 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:57.548 -07 000000626 INF: FPGA: Xmit ZDACW 30077\n [Z Motor]
17-03-17 19:38:57.548 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 19:38:57.548 -07 000000593 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:38:57.548 -07 000000593 INF: Y Motor: Moving 1340 steps-16
17-03-17 19:38:57.558 -07 000000626 INF: FPGA: 'ZDACW 30077' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:38:57.558 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:57.558 -07 000000462 INF: FPGA: Recv ZDACR 30077
17-03-17 19:38:57.568 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:57.568 -07 000000626 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 19:38:57.568 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:38:57.578 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:38:57.728 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 19:38:57.728 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:38:57.728 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:57.738 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:38:57.738 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:38:57.738 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:57.738 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:38:57.738 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:38:57.738 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 19:38:57.748 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:38:57.768 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:38:57.768 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 226 ms overall
17-03-17 19:38:57.948 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 19:38:57.948 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 401 ms overall
17-03-17 19:38:57.988 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:57.988 -07 000000547 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:38:57.998 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:38:57.998 -07 000000593 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:57.998 -07 000000593 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:38:57.998 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.838 mm, average velocity = 2.089 mm/sec
17-03-17 19:38:58.518 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.018051,
17-03-17 19:38:58.948 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:38:58.948 -07 000000501 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:38:58.958 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:58.958 -07 000000593 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:38:58.978 -07 000000593 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:38:58.978 -07 000000593 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:38:58.978 -07 000000593 INF: Y Motor: Moved to 66.5400 after 1439 ms (table move)
17-03-17 19:38:58.978 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137684 mm (DAC = 30077)
17-03-17 19:38:58.978 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:58.978 -07 000000462 INF: FPGA: Recv ZSGSRD 30724
17-03-17 19:38:58.988 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:38:58.988 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:58.988 -07 000000593 INF: FPGA: Recv ZSGSRD 30713
17-03-17 19:38:58.998 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:58.998 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:58.998 -07 000000462 INF: FPGA: Recv ZSGSRD 30726
17-03-17 19:38:59.008 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:59.008 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:59.008 -07 000000462 INF: FPGA: Recv ZSGSRD 30725
17-03-17 19:38:59.018 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:59.018 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:59.018 -07 000000593 INF: FPGA: Recv ZSGSRD 30728
17-03-17 19:38:59.028 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:59.028 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:59.028 -07 000000593 INF: FPGA: Recv ZSGSRD 30727
17-03-17 19:38:59.038 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:59.038 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:59.038 -07 000000593 INF: FPGA: Recv ZSGSRD 30718
17-03-17 19:38:59.048 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:59.048 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:59.048 -07 000000593 INF: FPGA: Recv ZSGSRD 30723
17-03-17 19:38:59.058 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:59.058 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:59.058 -07 000000593 INF: FPGA: Recv ZSGSRD 30722
17-03-17 19:38:59.068 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:59.068 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:59.068 -07 000000462 INF: FPGA: Recv ZSGSRD 30718
17-03-17 19:38:59.078 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:59.078 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:38:59.078 -07 000000462 INF: FPGA: Recv ZPIEZORD 26682
17-03-17 19:38:59.088 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:59.088 -07 000000482 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.589 V. Piezo Error = -8.9 V.
17-03-17 19:38:59.088 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30722 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30724 (-136.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30713 (-136.8 uncal um), Max = 30728 (-136.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:38:59.088 -07 000000482 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30722, posNoise = 6, negNoise = 9
17-03-17 19:38:59.088 -07 000000482 INF: Z Motor: After move to -0.137684, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:38:59.088 -07 000000482 INF: Z Motor: Settle wait time = 1442 ms, measure time = 105 ms (allowed 150 ms), total time = 1547 ms
17-03-17 19:38:59.088 -07 000000482 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:38:59.138 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 19:38:59.138 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:38:59.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:38:59.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:38:59.138 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:38:59.138 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:38:59.138 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:38:59.138 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:38:59.138 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:38:59.138 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:38:59.148 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:38:59.148 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:38:59.158 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 19:38:59.158 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:38:59.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:38:59.198 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:38:59.398 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:38:59.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:38:59.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:38:59.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 19:38:59.438 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:38:59.438 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 19:38:59.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:38:59.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 19:38:59.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:38:59.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:38:59.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:38:59.538 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:38:59.538 -07 000000482 INF: Autofocus start
17-03-17 19:38:59.538 -07 000000482 INF: MeasureProfile start
17-03-17 19:38:59.538 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:38:59.548 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:38:59.548 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:38:59.548 -07 000000482 INF: MeasureProfile done
17-03-17 19:38:59.548 -07 000000482 INF: X=64  Z correction [um]=0.2839165
17-03-17 19:38:59.548 -07 000000482 INF: Autofocus finished
17-03-17 19:38:59.748 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:38:59.748 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:38:59.748 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.137687997430315. ----------
17-03-17 19:38:59.748 -07 000000610 INF: Cycle	28	Tile	9	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:38:59.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28652, sync = True, waitForSettling = True)
17-03-17 19:38:59.758 -07 000000610 INF: Z Motor: Moving to -0.131160 mm, started at -0.137688 mm, distance = 6.53 um
17-03-17 19:38:59.758 -07 000000610 INF: FPGA: Xmit ZDACW 28652\n [Z Motor]
17-03-17 19:38:59.758 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:38:59.768 -07 000000610 INF: FPGA: 'ZDACW 28652' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:38:59.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:38:59.768 -07 000000501 INF: FPGA: Recv ZDACR 28652
17-03-17 19:38:59.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:59.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:38:59.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:59.928 -07 000000482 INF: FPGA: Recv ZSGSRD 29706
17-03-17 19:38:59.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:38:59.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:59.938 -07 000000593 INF: FPGA: Recv ZSGSRD 29702
17-03-17 19:38:59.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:59.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:59.948 -07 000000501 INF: FPGA: Recv ZSGSRD 29711
17-03-17 19:38:59.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:59.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:59.958 -07 000000593 INF: FPGA: Recv ZSGSRD 29701
17-03-17 19:38:59.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:59.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:59.968 -07 000000482 INF: FPGA: Recv ZSGSRD 29707
17-03-17 19:38:59.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:59.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:59.978 -07 000000501 INF: FPGA: Recv ZSGSRD 29713
17-03-17 19:38:59.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:59.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:59.988 -07 000000593 INF: FPGA: Recv ZSGSRD 29703
17-03-17 19:38:59.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:38:59.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:38:59.998 -07 000000593 INF: FPGA: Recv ZSGSRD 29706
17-03-17 19:39:00.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:00.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:00.008 -07 000000462 INF: FPGA: Recv ZSGSRD 29704
17-03-17 19:39:00.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:00.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:00.018 -07 000000501 INF: FPGA: Recv ZSGSRD 29706
17-03-17 19:39:00.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:00.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:00.028 -07 000000593 INF: FPGA: Recv ZPIEZORD 25356
17-03-17 19:39:00.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:00.038 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -9.6 V.
17-03-17 19:39:00.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29706 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29706 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29701 (-130.3 uncal um), Max = 29713 (-130.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:39:00.038 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29706, posNoise = 7, negNoise = 5
17-03-17 19:39:00.038 -07 000000610 INF: Z Motor: After move to -0.131160, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:00.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:39:00.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:00.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:00.038 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:39:00.038 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:39:00.038 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:00.038 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:39:00.038 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:00.038 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:39:00.038 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:39:00.038 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:00.038 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:39:00.038 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:39:00.048 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:39:00.048 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:39:00.048 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:39:00.048 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:39:00.058 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:39:00.058 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:39:00.058 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:39:00.058 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:39:00.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 28829 150\n [Camera]
17-03-17 19:39:00.258 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:39:00.658 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:39:00.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:39:00.658 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:00.658 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:00.658 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2361360656, 0x0, 391868352) start.
17-03-17 19:39:00.668 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:39:00.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:39:00.668 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:00.668 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:00.668 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:39:00.858 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28829 788
17-03-17 19:39:01.008 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:39:01.048 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2361360656, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:39:01.048 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:39:01.048 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:01.048 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 19:39:01.048 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:39:01.048 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:01.058 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:39:01.058 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:39:01.058 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:39:01.068 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:39:01.198 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:39:01.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:39:01.198 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:01.198 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:01.198 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 19:39:01.198 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:39:01.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:39:01.198 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:01.198 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:01.198 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 19:39:01.388 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1324
17-03-17 19:39:01.388 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:39:01.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 28829 150' command took 2 ms to send, 1326 ms to get response, and 1331 ms overall
17-03-17 19:39:01.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:39:01.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.131160997894286. ------
17-03-17 19:39:01.398 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13794 mm
17-03-17 19:39:01.398 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:39:01.398 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:01.398 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:39:01.398 -07 000000462 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 19:39:01.398 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30132, sync = True, waitForSettling = False)
17-03-17 19:39:01.398 -07 000000551 INF: Z Motor: Moving to -0.137935 mm, started at -0.131161 mm, distance = -6.77 um
17-03-17 19:39:01.398 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:01.408 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:39:01.408 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:01.408 -07 000000501 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:39:01.418 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:39:01.418 -07 000000551 INF: FPGA: Xmit ZDACW 30132\n [Z Motor]
17-03-17 19:39:01.418 -07 000000462 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:01.418 -07 000000462 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:39:01.418 -07 000000462 INF: Y Motor: Moving 1348 steps-26
17-03-17 19:39:01.418 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:39:01.428 -07 000000551 INF: FPGA: 'ZDACW 30132' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:39:01.428 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:39:01.438 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:39:01.448 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:01.448 -07 000000593 INF: FPGA: Recv ZDACR 30132
17-03-17 19:39:01.458 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:39:01.458 -07 000000551 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 19:39:01.598 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:39:01.598 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:39:01.598 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:01.608 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:39:01.608 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:39:01.608 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:01.608 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:01.608 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:39:01.608 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 19:39:01.618 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:39:01.628 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:39:01.628 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:39:01.708 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:39:01.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:39:01.808 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:39:01.808 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 19:39:01.848 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:01.848 -07 000000482 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:39:01.858 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:39:01.858 -07 000000462 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:01.858 -07 000000462 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 19:39:01.858 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 19:39:02.808 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:02.808 -07 000000501 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:39:02.818 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:02.818 -07 000000462 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:02.838 -07 000000462 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:39:02.838 -07 000000462 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:39:02.838 -07 000000462 INF: Y Motor: Moved to 67.3726 after 1435 ms (table move)
17-03-17 19:39:02.838 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137935 mm (DAC = 30132)
17-03-17 19:39:02.838 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:02.838 -07 000000541 INF: FPGA: Recv ZSGSRD 30766
17-03-17 19:39:02.848 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:39:02.848 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:02.848 -07 000000462 INF: FPGA: Recv ZSGSRD 30760
17-03-17 19:39:02.858 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:02.858 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:02.858 -07 000000541 INF: FPGA: Recv ZSGSRD 30759
17-03-17 19:39:02.868 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:02.868 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:02.868 -07 000000626 INF: FPGA: Recv ZSGSRD 30757
17-03-17 19:39:02.878 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:02.878 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:02.878 -07 000000551 INF: FPGA: Recv ZSGSRD 30763
17-03-17 19:39:02.888 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:02.888 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:02.888 -07 000000501 INF: FPGA: Recv ZSGSRD 30765
17-03-17 19:39:02.898 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:02.898 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:02.898 -07 000000462 INF: FPGA: Recv ZSGSRD 30764
17-03-17 19:39:02.908 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:02.908 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:02.908 -07 000000593 INF: FPGA: Recv ZSGSRD 30756
17-03-17 19:39:02.918 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:02.918 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:02.918 -07 000000623 INF: FPGA: Recv ZSGSRD 30755
17-03-17 19:39:02.928 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:02.928 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:02.928 -07 000000541 INF: FPGA: Recv ZSGSRD 30761
17-03-17 19:39:02.938 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:02.938 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:02.938 -07 000000482 INF: FPGA: Recv ZPIEZORD 26754
17-03-17 19:39:02.948 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:02.948 -07 000000569 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.598 V. Piezo Error = -8.8 V.
17-03-17 19:39:02.948 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30761 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30760 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30755 (-137.1 uncal um), Max = 30766 (-137.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:39:02.948 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30761, posNoise = 5, negNoise = 6
17-03-17 19:39:02.948 -07 000000569 INF: Z Motor: After move to -0.137935, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:02.948 -07 000000569 INF: Z Motor: Settle wait time = 1438 ms, measure time = 106 ms (allowed 150 ms), total time = 1544 ms
17-03-17 19:39:02.948 -07 000000569 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:39:02.998 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 19:39:02.998 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:39:02.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:02.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:02.998 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:02.998 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:02.998 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:39:02.998 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:02.998 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:39:02.998 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:39:03.008 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:39:03.008 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:39:03.018 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:39:03.018 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:39:03.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:39:03.068 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:39:03.268 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:39:03.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:39:03.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:39:03.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) start.
17-03-17 19:39:03.308 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:39:03.308 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 19:39:03.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 19:39:03.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 19:39:03.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:03.398 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:39:03.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:39:03.408 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:03.408 -07 000000593 INF: Autofocus start
17-03-17 19:39:03.408 -07 000000593 INF: MeasureProfile start
17-03-17 19:39:03.408 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:03.418 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:39:03.418 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:39:03.418 -07 000000593 INF: MeasureProfile done
17-03-17 19:39:03.418 -07 000000593 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 19:39:03.418 -07 000000593 INF: Autofocus finished
17-03-17 19:39:03.618 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:39:03.618 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:39:03.618 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137938541703844. ----------
17-03-17 19:39:03.618 -07 000000610 INF: Cycle	28	Tile	10	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:39:03.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28610, sync = True, waitForSettling = True)
17-03-17 19:39:03.628 -07 000000610 INF: Z Motor: Moving to -0.130968 mm, started at -0.137939 mm, distance = 6.97 um
17-03-17 19:39:03.628 -07 000000610 INF: FPGA: Xmit ZDACW 28610\n [Z Motor]
17-03-17 19:39:03.628 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:39:03.638 -07 000000610 INF: FPGA: 'ZDACW 28610' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:03.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:03.638 -07 000000541 INF: FPGA: Recv ZDACR 28610
17-03-17 19:39:03.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:03.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:39:03.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:03.798 -07 000000593 INF: FPGA: Recv ZSGSRD 29677
17-03-17 19:39:03.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:03.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:03.808 -07 000000482 INF: FPGA: Recv ZSGSRD 29675
17-03-17 19:39:03.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:03.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:03.818 -07 000000593 INF: FPGA: Recv ZSGSRD 29673
17-03-17 19:39:03.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:03.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:03.828 -07 000000482 INF: FPGA: Recv ZSGSRD 29674
17-03-17 19:39:03.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:03.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:03.838 -07 000000541 INF: FPGA: Recv ZSGSRD 29676
17-03-17 19:39:03.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:03.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:03.848 -07 000000541 INF: FPGA: Recv ZSGSRD 29678
17-03-17 19:39:03.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:03.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:03.858 -07 000000541 INF: FPGA: Recv ZSGSRD 29680
17-03-17 19:39:03.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:03.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:03.868 -07 000000541 INF: FPGA: Recv ZSGSRD 29679
17-03-17 19:39:03.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:03.888 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.009895,
17-03-17 19:39:03.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:03.898 -07 000000482 INF: FPGA: Recv ZSGSRD 29675
17-03-17 19:39:03.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:39:03.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:03.918 -07 000000593 INF: FPGA: Recv ZSGSRD 29677
17-03-17 19:39:03.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:39:03.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:03.938 -07 000000593 INF: FPGA: Recv ZPIEZORD 25363
17-03-17 19:39:03.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:39:03.948 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.366 V. Piezo Error = -9.5 V.
17-03-17 19:39:03.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29676 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29676 (-130.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29673 (-130.2 uncal um), Max = 29680 (-130.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:39:03.948 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29676, posNoise = 4, negNoise = 3
17-03-17 19:39:03.948 -07 000000610 INF: Z Motor: After move to -0.130968, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:03.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 321 ms)
17-03-17 19:39:03.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:03.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:03.948 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:03.948 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:03.948 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:39:03.948 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:39:03.948 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:39:03.948 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:03.948 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:39:03.948 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:39:03.948 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:39:03.958 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:39:03.958 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:39:03.958 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:39:03.958 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:39:03.958 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:39:03.968 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:39:03.968 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:39:03.968 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:39:03.968 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:39:03.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 28787 150\n [Camera]
17-03-17 19:39:04.168 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:39:04.578 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:39:04.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:39:04.578 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:04.578 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:04.578 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:39:04.578 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:39:04.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:39:04.578 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:04.578 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:04.578 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:39:04.768 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28787 788
17-03-17 19:39:04.918 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:39:04.968 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 19:39:04.968 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:39:04.968 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:04.978 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:39:04.978 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:39:04.978 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:39:04.978 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:04.978 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:39:04.988 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:39:04.988 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:39:05.108 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:39:05.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:39:05.108 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:05.258 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:39:05.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:39:05.258 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:05.258 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:05.258 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 19:39:05.268 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:05.268 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) start.
17-03-17 19:39:05.298 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:39:05.298 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:39:05.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 28787 150' command took 2 ms to send, 1319 ms to get response, and 1331 ms overall
17-03-17 19:39:05.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:39:05.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.130968271530033. ------
17-03-17 19:39:05.308 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13741 mm
17-03-17 19:39:05.308 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:39:05.308 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:05.308 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30018, sync = True, waitForSettling = False)
17-03-17 19:39:05.308 -07 000000593 INF: Z Motor: Moving to -0.137414 mm, started at -0.130968 mm, distance = -6.45 um
17-03-17 19:39:05.308 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:05.318 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:39:05.318 -07 000000593 INF: FPGA: Xmit ZDACW 30018\n [Z Motor]
17-03-17 19:39:05.318 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:39:05.318 -07 000000482 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 19:39:05.318 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:39:05.328 -07 000000593 INF: FPGA: 'ZDACW 30018' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:05.328 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:05.328 -07 000000512 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:39:05.338 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:39:05.338 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:39:05.338 -07 000000482 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:05.338 -07 000000482 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:39:05.338 -07 000000482 INF: Y Motor: Moving 1343 steps-21
17-03-17 19:39:05.348 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:05.348 -07 000000551 INF: FPGA: Recv ZDACR 30018
17-03-17 19:39:05.358 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:39:05.358 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:39:05.358 -07 000000593 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 19:39:05.538 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:39:05.538 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:39:05.648 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:39:05.648 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:39:05.648 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:05.648 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 19:39:05.648 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:39:05.648 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:05.648 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:05.648 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:05.648 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 540 ms.
17-03-17 19:39:05.658 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:39:05.728 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 19:39:05.728 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 19:39:05.768 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:05.768 -07 000000475 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:39:05.778 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:39:05.778 -07 000000482 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:05.778 -07 000000482 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:39:05.778 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.840 mm, average velocity = 2.154 mm/sec
17-03-17 19:39:06.708 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:39:06.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:39:06.728 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:06.728 -07 000000478 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:39:06.738 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:06.738 -07 000000482 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:06.748 -07 000000482 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:39:06.748 -07 000000482 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:39:06.748 -07 000000482 INF: Y Motor: Moved to 68.2056 after 1438 ms (table move)
17-03-17 19:39:06.758 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137414 mm (DAC = 30018)
17-03-17 19:39:06.758 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:06.758 -07 000000478 INF: FPGA: Recv ZSGSRD 30685
17-03-17 19:39:06.768 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:39:06.768 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:06.768 -07 000000478 INF: FPGA: Recv ZSGSRD 30674
17-03-17 19:39:06.778 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:06.778 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:07.748 -07 000000541 INF: FPGA: Recv ZSGSRD 30687
17-03-17 19:39:07.748 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 960 ms to get response, and 970 ms overall
17-03-17 19:39:07.748 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:07.748 -07 000000551 INF: FPGA: Recv ZSGSRD 30685
17-03-17 19:39:07.758 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:07.758 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:07.758 -07 000000541 INF: FPGA: Recv ZSGSRD 30680
17-03-17 19:39:07.768 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:07.768 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:07.768 -07 000000482 INF: FPGA: Recv ZSGSRD 30684
17-03-17 19:39:07.778 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:07.778 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:07.778 -07 000000608 INF: FPGA: Recv ZSGSRD 30684
17-03-17 19:39:07.788 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:07.788 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:07.788 -07 000000478 INF: FPGA: Recv ZSGSRD 30680
17-03-17 19:39:07.798 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:07.798 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:07.798 -07 000000551 INF: FPGA: Recv ZSGSRD 30678
17-03-17 19:39:07.808 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:07.808 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:07.808 -07 000000593 INF: FPGA: Recv ZSGSRD 30683
17-03-17 19:39:07.818 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:07.818 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:07.818 -07 000000512 INF: FPGA: Recv ZPIEZORD 26667
17-03-17 19:39:07.828 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:07.828 -07 000000547 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.580 V. Piezo Error = -8.8 V.
17-03-17 19:39:07.828 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30682 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30684 (-136.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30674 (-136.6 uncal um), Max = 30687 (-136.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:39:07.828 -07 000000547 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30682, posNoise = 5, negNoise = 8
17-03-17 19:39:07.828 -07 000000547 INF: Z Motor: After move to -0.137414, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:07.828 -07 000000547 INF: Z Motor: Settle wait time = 1445 ms, measure time = 1066 ms (allowed 150 ms), total time = 2511 ms
17-03-17 19:39:07.828 -07 000000547 INF: Z Motor: Warning: Actual position measuring time = 1066 ms, longer than max expected time of 150 ms
17-03-17 19:39:07.828 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2515 ms
17-03-17 19:39:07.828 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:39:07.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:07.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:07.828 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:07.828 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:07.828 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:39:07.828 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:07.838 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:39:07.838 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:39:07.838 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:39:07.838 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:39:07.838 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:39:07.838 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:39:07.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:39:07.888 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:39:08.088 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:39:08.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:39:08.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:39:08.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 19:39:08.128 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:39:08.128 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 19:39:08.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 19:39:08.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 19:39:08.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:08.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:39:08.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:39:08.328 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:08.328 -07 000000547 INF: Autofocus start
17-03-17 19:39:08.328 -07 000000547 INF: MeasureProfile start
17-03-17 19:39:08.338 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:08.338 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:39:08.338 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:39:08.348 -07 000000547 INF: MeasureProfile done
17-03-17 19:39:08.348 -07 000000547 INF: X=32  Z correction [um]=0.1299841
17-03-17 19:39:08.348 -07 000000547 INF: Autofocus finished
17-03-17 19:39:08.538 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:39:08.538 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:39:08.538 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137431028944645. ----------
17-03-17 19:39:08.548 -07 000000610 INF: Cycle	28	Tile	11	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:39:08.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28558, sync = True, waitForSettling = True)
17-03-17 19:39:08.548 -07 000000610 INF: Z Motor: Moving to -0.130730 mm, started at -0.137431 mm, distance = 6.70 um
17-03-17 19:39:08.548 -07 000000610 INF: FPGA: Xmit ZDACW 28558\n [Z Motor]
17-03-17 19:39:08.548 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:39:08.558 -07 000000610 INF: FPGA: 'ZDACW 28558' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:39:08.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:08.558 -07 000000593 INF: FPGA: Recv ZDACR 28558
17-03-17 19:39:08.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:08.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:39:08.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:08.718 -07 000000551 INF: FPGA: Recv ZSGSRD 29638
17-03-17 19:39:08.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:08.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:08.728 -07 000000478 INF: FPGA: Recv ZSGSRD 29641
17-03-17 19:39:08.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:08.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:08.738 -07 000000541 INF: FPGA: Recv ZSGSRD 29640
17-03-17 19:39:08.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:08.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:08.748 -07 000000593 INF: FPGA: Recv ZSGSRD 29641
17-03-17 19:39:08.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:08.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:08.758 -07 000000547 INF: FPGA: Recv ZSGSRD 29640
17-03-17 19:39:08.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:08.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:08.768 -07 000000608 INF: FPGA: Recv ZSGSRD 29635
17-03-17 19:39:08.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:08.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:08.778 -07 000000501 INF: FPGA: Recv ZSGSRD 29641
17-03-17 19:39:08.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:08.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:08.788 -07 000000593 INF: FPGA: Recv ZSGSRD 29646
17-03-17 19:39:08.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:08.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:08.798 -07 000000547 INF: FPGA: Recv ZSGSRD 29639
17-03-17 19:39:08.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:08.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:08.808 -07 000000478 INF: FPGA: Recv ZSGSRD 29638
17-03-17 19:39:08.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:08.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:08.818 -07 000000547 INF: FPGA: Recv ZPIEZORD 25255
17-03-17 19:39:08.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:08.828 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -9.6 V.
17-03-17 19:39:08.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29640 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29640 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29635 (-129.9 uncal um), Max = 29646 (-130.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:39:08.828 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29640, posNoise = 6, negNoise = 5
17-03-17 19:39:08.828 -07 000000610 INF: Z Motor: After move to -0.130730, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:08.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:39:08.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:08.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:08.828 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:08.828 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:39:08.828 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:08.828 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:08.828 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:39:08.828 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:39:08.828 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:39:08.828 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:39:08.828 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:39:08.828 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:39:08.828 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:39:08.828 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:39:08.838 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:39:08.838 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:39:08.848 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 19:39:08.848 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:39:08.848 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:39:08.848 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:39:08.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 28735 150\n [Camera]
17-03-17 19:39:09.048 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:39:09.288 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.988112,
17-03-17 19:39:09.458 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:39:09.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:39:09.458 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:09.458 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:39:09.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:39:09.458 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:09.468 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:09.468 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2487301960, 0x0, 391868352) start.
17-03-17 19:39:09.468 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:09.468 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:39:09.648 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28735 788
17-03-17 19:39:09.798 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:39:09.858 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2487301960, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:39:09.858 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:39:09.858 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:09.868 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:39:09.868 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:39:09.868 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:09.868 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:09.868 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 19:39:09.868 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:09.878 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:39:09.988 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:39:09.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:39:09.988 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:10.108 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:39:10.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:39:10.108 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:10.108 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:10.108 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:39:10.108 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:10.108 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:39:10.178 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:39:10.188 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:39:10.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 28735 150' command took 2 ms to send, 1320 ms to get response, and 1332 ms overall
17-03-17 19:39:10.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:39:10.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.13073699989293. ------
17-03-17 19:39:10.188 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:10.188 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13735 mm
17-03-17 19:39:10.188 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:39:10.188 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:10.198 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:39:10.198 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:39:10.198 -07 000000482 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 19:39:10.198 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:10.198 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30004, sync = True, waitForSettling = False)
17-03-17 19:39:10.198 -07 000000626 INF: Z Motor: Moving to -0.137350 mm, started at -0.130737 mm, distance = -6.61 um
17-03-17 19:39:10.198 -07 000000623 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:39:10.208 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:10.208 -07 000000482 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:10.208 -07 000000626 INF: FPGA: Xmit ZDACW 30004\n [Z Motor]
17-03-17 19:39:10.208 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:39:10.208 -07 000000482 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:39:10.208 -07 000000482 INF: Y Motor: Moving 1338 steps-14
17-03-17 19:39:10.218 -07 000000626 INF: FPGA: 'ZDACW 30004' command took 2 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:39:10.218 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:39:10.228 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:39:10.238 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:10.238 -07 000000623 INF: FPGA: Recv ZDACR 30004
17-03-17 19:39:10.248 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:39:10.248 -07 000000626 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 19:39:10.418 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:39:10.418 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:39:10.488 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:39:10.488 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:39:10.488 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:10.498 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:10.498 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:39:10.498 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:39:10.498 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:39:10.498 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:10.508 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:10.508 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 19:39:10.598 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 19:39:10.598 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 19:39:10.638 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:10.638 -07 000000551 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:39:10.648 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:39:10.648 -07 000000482 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:10.648 -07 000000482 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:39:10.648 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.837 mm, average velocity = 2.135 mm/sec
17-03-17 19:39:11.598 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:11.598 -07 000000626 INF: FPGA: Recv YRDPOS 141370
17-03-17 19:39:11.608 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:11.608 -07 000000482 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:11.628 -07 000000482 INF: Y Motor: After move to 69.042610, error = -0.014290, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:39:11.628 -07 000000482 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:39:11.628 -07 000000482 INF: Y Motor: Moved to 69.0283 after 1434 ms (table move)
17-03-17 19:39:11.628 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137350 mm (DAC = 30004)
17-03-17 19:39:11.638 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:11.638 -07 000000547 INF: FPGA: Recv ZSGSRD 30670
17-03-17 19:39:11.648 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:11.648 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:11.648 -07 000000547 INF: FPGA: Recv ZSGSRD 30663
17-03-17 19:39:11.658 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:11.658 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:11.658 -07 000000547 INF: FPGA: Recv ZSGSRD 30674
17-03-17 19:39:11.668 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:11.668 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:11.668 -07 000000547 INF: FPGA: Recv ZSGSRD 30674
17-03-17 19:39:11.678 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:11.678 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:11.678 -07 000000547 INF: FPGA: Recv ZSGSRD 30671
17-03-17 19:39:11.688 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:11.688 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:11.688 -07 000000626 INF: FPGA: Recv ZSGSRD 30671
17-03-17 19:39:11.698 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:11.698 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:11.698 -07 000000593 INF: FPGA: Recv ZSGSRD 30667
17-03-17 19:39:11.708 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:11.708 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:11.708 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:39:11.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:39:11.708 -07 000000608 INF: FPGA: Recv ZSGSRD 30672
17-03-17 19:39:11.718 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:11.718 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:11.718 -07 000000608 INF: FPGA: Recv ZSGSRD 30665
17-03-17 19:39:11.728 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:11.728 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:11.728 -07 000000608 INF: FPGA: Recv ZSGSRD 30666
17-03-17 19:39:11.738 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:11.738 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:11.738 -07 000000608 INF: FPGA: Recv ZPIEZORD 26709
17-03-17 19:39:11.748 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:11.748 -07 000000501 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.578 V. Piezo Error = -8.7 V.
17-03-17 19:39:11.748 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30669 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30670 (-136.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30663 (-136.5 uncal um), Max = 30674 (-136.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:39:11.748 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30669, posNoise = 5, negNoise = 6
17-03-17 19:39:11.748 -07 000000501 INF: Z Motor: After move to -0.137350, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:11.748 -07 000000501 INF: Z Motor: Settle wait time = 1438 ms, measure time = 111 ms (allowed 150 ms), total time = 1549 ms
17-03-17 19:39:11.748 -07 000000501 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 19:39:11.788 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 19:39:11.788 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:39:11.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:11.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:11.788 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:39:11.788 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:11.788 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:11.788 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:11.788 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:39:11.788 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:39:11.798 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:39:11.798 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:39:11.798 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:39:11.798 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:39:11.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:39:11.848 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:39:12.048 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:39:12.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:39:12.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:39:12.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 19:39:12.088 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:39:12.088 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 19:39:12.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:39:12.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:39:12.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:12.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:39:12.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:39:12.188 -07 000000623 INF: Autofocus start
17-03-17 19:39:12.188 -07 000000623 INF: MeasureProfile start
17-03-17 19:39:12.188 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:12.188 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:12.198 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:39:12.198 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:39:12.198 -07 000000623 INF: MeasureProfile done
17-03-17 19:39:12.198 -07 000000623 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:39:12.198 -07 000000623 INF: Autofocus finished
17-03-17 19:39:12.398 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:39:12.398 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:39:12.398 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0283203125, Z-position -0.137347514186802. ----------
17-03-17 19:39:12.398 -07 000000610 INF: Cycle	28	Tile	12	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:39:12.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28511, sync = True, waitForSettling = True)
17-03-17 19:39:12.408 -07 000000610 INF: Z Motor: Moving to -0.130515 mm, started at -0.137348 mm, distance = 6.83 um
17-03-17 19:39:12.408 -07 000000610 INF: FPGA: Xmit ZDACW 28511\n [Z Motor]
17-03-17 19:39:12.408 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 19:39:12.418 -07 000000610 INF: FPGA: 'ZDACW 28511' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:39:12.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:12.418 -07 000000541 INF: FPGA: Recv ZDACR 28511
17-03-17 19:39:12.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:12.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:39:12.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:12.578 -07 000000593 INF: FPGA: Recv ZSGSRD 29605
17-03-17 19:39:12.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:12.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:12.588 -07 000000547 INF: FPGA: Recv ZSGSRD 29614
17-03-17 19:39:12.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:12.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:12.598 -07 000000478 INF: FPGA: Recv ZSGSRD 29604
17-03-17 19:39:12.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:12.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:12.608 -07 000000593 INF: FPGA: Recv ZSGSRD 29605
17-03-17 19:39:12.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:12.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:12.618 -07 000000486 INF: FPGA: Recv ZSGSRD 29601
17-03-17 19:39:12.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:12.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:12.628 -07 000000486 INF: FPGA: Recv ZSGSRD 29610
17-03-17 19:39:12.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:12.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:12.638 -07 000000482 INF: FPGA: Recv ZSGSRD 29609
17-03-17 19:39:12.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:12.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:12.648 -07 000000486 INF: FPGA: Recv ZSGSRD 29604
17-03-17 19:39:12.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:12.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:12.658 -07 000000482 INF: FPGA: Recv ZSGSRD 29609
17-03-17 19:39:12.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:12.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:12.668 -07 000000486 INF: FPGA: Recv ZSGSRD 29608
17-03-17 19:39:12.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:12.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:12.678 -07 000000482 INF: FPGA: Recv ZPIEZORD 25298
17-03-17 19:39:12.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:12.688 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -9.5 V.
17-03-17 19:39:12.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29607 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29606 (-129.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29601 (-129.7 uncal um), Max = 29614 (-129.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:39:12.688 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29607, posNoise = 7, negNoise = 6
17-03-17 19:39:12.688 -07 000000610 INF: Z Motor: After move to -0.130515, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:12.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:39:12.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:12.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:12.688 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:12.688 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:39:12.688 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:12.688 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:12.688 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:39:12.688 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:39:12.688 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:39:12.688 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:39:12.688 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:39:12.688 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:39:12.698 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:39:12.698 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:39:12.698 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:39:12.698 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:39:12.708 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:39:12.708 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:39:12.708 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:39:12.708 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:39:12.708 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 28688 150\n [Camera]
17-03-17 19:39:12.908 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:39:13.318 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:39:13.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:39:13.318 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:13.318 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:13.318 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2482896656, 0x0, 391868352) start.
17-03-17 19:39:13.318 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:39:13.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:39:13.318 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:13.318 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:13.318 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:39:13.508 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28688 788
17-03-17 19:39:13.658 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:39:13.718 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2482896656, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:39:13.718 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:39:13.718 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:13.718 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:13.718 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:39:13.718 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 19:39:13.718 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:39:13.718 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:13.728 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:13.728 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:39:13.848 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:39:13.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:39:13.848 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:13.968 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:13.968 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:39:13.968 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:39:13.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:39:13.968 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:13.968 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:13.968 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:39:14.048 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:39:14.048 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:39:14.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 28688 150' command took 2 ms to send, 1321 ms to get response, and 1333 ms overall
17-03-17 19:39:14.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:39:14.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0283203125, Z-Position -0.130525000892252. ------
17-03-17 19:39:14.048 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:14.048 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13690 mm
17-03-17 19:39:14.048 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:39:14.048 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:39:14.048 -07 000000486 INF: Y Motor: Moving to 69.8726 mm, started at 69.0283 mm, delta = 0.8443 mm
17-03-17 19:39:14.058 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:14.368 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 19:39:14.368 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:39:14.368 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:14.368 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 19:39:14.368 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:39:14.368 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:14.378 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:39:14.378 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:39:14.378 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-17 19:39:14.388 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:39:14.388 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 29905, sync = True, waitForSettling = False)
17-03-17 19:39:14.388 -07 000000482 INF: Z Motor: Moving to -0.136896 mm, started at -0.130525 mm, distance = -6.37 um
17-03-17 19:39:14.388 -07 000000482 INF: FPGA: Xmit ZDACW 29905\n [Z Motor]
17-03-17 19:39:14.398 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:14.398 -07 000000541 INF: FPGA: Recv YRDPOS 141370
17-03-17 19:39:14.398 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 342 ms to get response, and 345 ms overall
17-03-17 19:39:14.398 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:39:14.398 -07 000000482 INF: FPGA: 'ZDACW 29905' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 19:39:14.398 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:14.398 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 332 ms to get response, and 342 ms overall
17-03-17 19:39:14.398 -07 000000486 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:14.398 -07 000000486 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:39:14.398 -07 000000486 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:39:14.398 -07 000000541 INF: FPGA: Recv ZDACR 29905
17-03-17 19:39:14.408 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:39:14.408 -07 000000482 INF: Z Motor: MoveAbsStepped took 13 ms (did NOT wait for settling yet))
17-03-17 19:39:14.408 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:39:14.418 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:39:14.608 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:39:14.608 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 19:39:14.708 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.983999,
17-03-17 19:39:14.788 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 19:39:14.788 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:39:14.828 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:14.828 -07 000000482 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:39:14.838 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:39:14.838 -07 000000486 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:14.838 -07 000000486 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:39:14.838 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.137 mm/sec
17-03-17 19:39:15.788 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:15.788 -07 000000541 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:39:15.798 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:15.798 -07 000000486 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:15.818 -07 000000486 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:39:15.818 -07 000000486 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:39:15.818 -07 000000486 INF: Y Motor: Moved to 69.8643 after 1762 ms (table move)
17-03-17 19:39:15.818 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136896 mm (DAC = 29905)
17-03-17 19:39:15.818 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:15.818 -07 000000462 INF: FPGA: Recv ZSGSRD 30598
17-03-17 19:39:15.828 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:39:15.828 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:15.828 -07 000000501 INF: FPGA: Recv ZSGSRD 30597
17-03-17 19:39:15.838 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:15.838 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:15.838 -07 000000431 INF: FPGA: Recv ZSGSRD 30597
17-03-17 19:39:15.848 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:15.848 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:15.848 -07 000000482 INF: FPGA: Recv ZSGSRD 30603
17-03-17 19:39:15.858 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:15.858 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:15.858 -07 000000462 INF: FPGA: Recv ZSGSRD 30603
17-03-17 19:39:15.868 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:15.868 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:15.868 -07 000000482 INF: FPGA: Recv ZSGSRD 30601
17-03-17 19:39:15.878 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:15.878 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:15.878 -07 000000431 INF: FPGA: Recv ZSGSRD 30596
17-03-17 19:39:15.888 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:15.888 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:15.888 -07 000000486 INF: FPGA: Recv ZSGSRD 30593
17-03-17 19:39:15.898 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:15.898 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:15.898 -07 000000462 INF: FPGA: Recv ZSGSRD 30597
17-03-17 19:39:15.908 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:15.908 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:15.908 -07 000000475 INF: FPGA: Recv ZSGSRD 30598
17-03-17 19:39:15.918 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:15.918 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:15.918 -07 000000431 INF: FPGA: Recv ZPIEZORD 26609
17-03-17 19:39:15.928 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:15.928 -07 000000623 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.563 V. Piezo Error = -8.8 V.
17-03-17 19:39:15.928 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30598 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30598 (-136.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30593 (-136.1 uncal um), Max = 30603 (-136.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:39:15.928 -07 000000623 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30598, posNoise = 5, negNoise = 5
17-03-17 19:39:15.928 -07 000000623 INF: Z Motor: After move to -0.136896, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:15.928 -07 000000623 INF: Z Motor: Settle wait time = 1428 ms, measure time = 105 ms (allowed 150 ms), total time = 1533 ms
17-03-17 19:39:15.928 -07 000000623 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:39:15.978 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1923 ms
17-03-17 19:39:15.978 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:39:15.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:15.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:15.978 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:15.978 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:39:15.978 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:15.978 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:15.978 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:39:15.978 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:39:15.988 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:39:15.988 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:39:15.998 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:39:15.998 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 19:39:15.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:39:16.048 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 19:39:16.248 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 19:39:16.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 19:39:16.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:39:16.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:39:16.278 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:39:16.278 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 19:39:16.278 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 19:39:16.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:39:16.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:16.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:39:16.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:39:16.378 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:16.378 -07 000000486 INF: Autofocus start
17-03-17 19:39:16.378 -07 000000486 INF: MeasureProfile start
17-03-17 19:39:16.378 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:16.388 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:39:16.388 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:39:16.388 -07 000000486 INF: MeasureProfile done
17-03-17 19:39:16.388 -07 000000486 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:39:16.388 -07 000000486 INF: Autofocus finished
17-03-17 19:39:16.588 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:39:16.588 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:39:16.588 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.136891395124737. ----------
17-03-17 19:39:16.598 -07 000000610 INF: Cycle	28	Tile	13	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:39:16.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28429, sync = True, waitForSettling = True)
17-03-17 19:39:16.598 -07 000000610 INF: Z Motor: Moving to -0.130140 mm, started at -0.136891 mm, distance = 6.75 um
17-03-17 19:39:16.598 -07 000000610 INF: FPGA: Xmit ZDACW 28429\n [Z Motor]
17-03-17 19:39:16.598 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:39:16.608 -07 000000610 INF: FPGA: 'ZDACW 28429' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:39:16.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:16.608 -07 000000482 INF: FPGA: Recv ZDACR 28429
17-03-17 19:39:16.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:16.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:39:16.708 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:39:16.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:39:16.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:16.768 -07 000000475 INF: FPGA: Recv ZSGSRD 29537
17-03-17 19:39:16.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:16.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:16.778 -07 000000486 INF: FPGA: Recv ZSGSRD 29548
17-03-17 19:39:16.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:16.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:16.788 -07 000000541 INF: FPGA: Recv ZSGSRD 29547
17-03-17 19:39:16.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:16.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:16.798 -07 000000462 INF: FPGA: Recv ZSGSRD 29551
17-03-17 19:39:16.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:16.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:16.808 -07 000000501 INF: FPGA: Recv ZSGSRD 29552
17-03-17 19:39:16.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:16.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:16.818 -07 000000482 INF: FPGA: Recv ZSGSRD 29539
17-03-17 19:39:16.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:16.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:16.828 -07 000000623 INF: FPGA: Recv ZSGSRD 29548
17-03-17 19:39:16.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:16.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:16.838 -07 000000475 INF: FPGA: Recv ZSGSRD 29547
17-03-17 19:39:16.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:16.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:16.848 -07 000000475 INF: FPGA: Recv ZSGSRD 29549
17-03-17 19:39:16.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:16.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:16.858 -07 000000541 INF: FPGA: Recv ZSGSRD 29549
17-03-17 19:39:16.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:16.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:16.868 -07 000000541 INF: FPGA: Recv ZPIEZORD 25232
17-03-17 19:39:16.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:16.878 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.338 V. Piezo Error = -9.5 V.
17-03-17 19:39:16.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29547 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29548 (-129.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29537 (-129.3 uncal um), Max = 29552 (-129.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:39:16.878 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29547, posNoise = 5, negNoise = 10
17-03-17 19:39:16.878 -07 000000610 INF: Z Motor: After move to -0.130140, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:16.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:39:16.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:16.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:16.878 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:16.878 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:16.878 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:39:16.878 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:16.878 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:39:16.878 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:39:16.878 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:39:16.878 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:39:16.878 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:39:16.878 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:39:16.878 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:39:16.878 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:39:16.888 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:39:16.888 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:39:16.888 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:39:16.888 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:39:16.898 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:39:16.898 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:39:16.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 28606 150\n [Camera]
17-03-17 19:39:17.098 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:39:17.498 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:39:17.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:39:17.508 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:17.508 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:17.508 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) start.
17-03-17 19:39:17.508 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:39:17.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:39:17.508 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:17.508 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:17.508 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) start.
17-03-17 19:39:17.888 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:39:17.888 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:39:17.888 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:17.888 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:39:17.888 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:39:17.888 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:17.888 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:39:17.888 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:39:17.888 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:39:17.898 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:39:17.898 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28606 788
17-03-17 19:39:17.898 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:39:18.038 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:39:18.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:39:18.038 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:18.148 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:39:18.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:39:18.158 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:18.158 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:18.158 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:39:18.158 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:18.158 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:39:18.538 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:39:18.538 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:39:18.538 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:18.538 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:18.548 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:39:18.558 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:39:18.558 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:39:18.558 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:18.558 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:39:18.558 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:39:18.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 28606 150' command took 2 ms to send, 1654 ms to get response, and 1657 ms overall
17-03-17 19:39:18.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:39:18.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8642578125, Z-Position -0.130139548163746. ------
17-03-17 19:39:18.558 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:39:18.558 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 19:39:18.558 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:18.568 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13665 mm
17-03-17 19:39:18.568 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:39:19.488 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:19.488 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 921 ms to get response, and 921 ms overall
17-03-17 19:39:19.488 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:39:19.488 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:39:19.488 -07 000000512 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 19:39:19.498 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:20.018 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29851, sync = True, waitForSettling = False)
17-03-17 19:39:20.018 -07 000000626 INF: Z Motor: Moving to -0.136649 mm, started at -0.130140 mm, distance = -6.51 um
17-03-17 19:39:20.018 -07 000000626 INF: FPGA: Xmit ZDACW 29851\n [Z Motor]
17-03-17 19:39:20.548 -07 000000608 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:39:20.548 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:39:20.548 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1040 ms to get response, and 1056 ms overall
17-03-17 19:39:20.548 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:39:20.548 -07 000000626 INF: FPGA: 'ZDACW 29851' command took 0 ms to send, 521 ms to get response, and 529 ms overall
17-03-17 19:39:20.548 -07 000000512 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:20.548 -07 000000512 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:39:20.548 -07 000000512 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:39:20.548 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 1050 ms to get response, and 1059 ms overall
17-03-17 19:39:20.548 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:20.548 -07 000000608 INF: FPGA: Recv ZDACR 29851
17-03-17 19:39:20.558 -07 000000626 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:39:20.558 -07 000000626 INF: Z Motor: MoveAbsStepped took 538 ms (did NOT wait for settling yet))
17-03-17 19:39:20.558 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:39:20.858 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.993549,
17-03-17 19:39:20.928 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 19:39:20.928 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 19:39:20.968 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:20.968 -07 000000551 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:39:20.978 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:39:20.978 -07 000000512 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:20.978 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:39:20.978 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.166 mm/sec
17-03-17 19:39:21.708 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:39:21.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:39:21.928 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:21.928 -07 000000569 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:39:21.938 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:21.938 -07 000000512 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:21.958 -07 000000512 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:39:21.958 -07 000000512 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:39:21.958 -07 000000512 INF: Y Motor: Moved to 70.6895 after 2468 ms (table move)
17-03-17 19:39:21.958 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136649 mm (DAC = 29851)
17-03-17 19:39:21.958 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:21.958 -07 000000569 INF: FPGA: Recv ZSGSRD 30561
17-03-17 19:39:21.968 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:39:21.968 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:21.968 -07 000000551 INF: FPGA: Recv ZSGSRD 30554
17-03-17 19:39:21.978 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:21.978 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:21.978 -07 000000431 INF: FPGA: Recv ZSGSRD 30558
17-03-17 19:39:21.988 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:21.988 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:21.988 -07 000000551 INF: FPGA: Recv ZSGSRD 30566
17-03-17 19:39:21.998 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:21.998 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:21.998 -07 000000431 INF: FPGA: Recv ZSGSRD 30559
17-03-17 19:39:22.008 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:22.008 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:22.008 -07 000000569 INF: FPGA: Recv ZSGSRD 30568
17-03-17 19:39:22.018 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:22.018 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:22.018 -07 000000431 INF: FPGA: Recv ZSGSRD 30562
17-03-17 19:39:22.028 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:22.028 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:22.028 -07 000000626 INF: FPGA: Recv ZSGSRD 30561
17-03-17 19:39:22.038 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:22.038 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:22.038 -07 000000547 INF: FPGA: Recv ZSGSRD 30559
17-03-17 19:39:22.048 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:22.048 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:22.048 -07 000000512 INF: FPGA: Recv ZSGSRD 30560
17-03-17 19:39:22.058 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:22.058 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:22.058 -07 000000569 INF: FPGA: Recv ZPIEZORD 26531
17-03-17 19:39:22.068 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:22.068 -07 000000541 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.555 V. Piezo Error = -8.9 V.
17-03-17 19:39:22.068 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30561 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30560 (-135.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30554 (-135.8 uncal um), Max = 30568 (-135.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:39:22.068 -07 000000541 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30561, posNoise = 7, negNoise = 7
17-03-17 19:39:22.068 -07 000000541 INF: Z Motor: After move to -0.136649, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:22.068 -07 000000541 INF: Z Motor: Settle wait time = 1944 ms, measure time = 105 ms (allowed 150 ms), total time = 2049 ms
17-03-17 19:39:22.068 -07 000000541 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:39:22.118 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3542 ms
17-03-17 19:39:22.118 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:39:22.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:22.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:22.118 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:22.118 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:22.118 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:39:22.118 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:22.118 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:39:22.118 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:39:22.128 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:39:22.128 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:39:22.138 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:39:22.138 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:39:22.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:39:22.188 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:39:22.388 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:39:22.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:39:22.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:39:22.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:39:22.428 -07 000000626 INF: FPGA: Recv @CAMSNAP 282
17-03-17 19:39:22.428 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 19:39:22.428 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 287 ms overall
17-03-17 19:39:22.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:39:22.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:22.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:39:22.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:39:22.528 -07 000000626 INF: Autofocus start
17-03-17 19:39:22.528 -07 000000626 INF: MeasureProfile start
17-03-17 19:39:22.528 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:22.528 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:22.538 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:39:22.538 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:39:22.538 -07 000000626 INF: MeasureProfile done
17-03-17 19:39:22.538 -07 000000626 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:39:22.538 -07 000000626 INF: Autofocus finished
17-03-17 19:39:22.738 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:39:22.738 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:39:22.738 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.136653699275492. ----------
17-03-17 19:39:22.738 -07 000000610 INF: Cycle	28	Tile	14	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:39:22.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28346, sync = True, waitForSettling = True)
17-03-17 19:39:22.748 -07 000000610 INF: Z Motor: Moving to -0.129760 mm, started at -0.136654 mm, distance = 6.89 um
17-03-17 19:39:22.748 -07 000000610 INF: FPGA: Xmit ZDACW 28346\n [Z Motor]
17-03-17 19:39:22.748 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:39:22.758 -07 000000610 INF: FPGA: 'ZDACW 28346' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:22.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:22.758 -07 000000431 INF: FPGA: Recv ZDACR 28346
17-03-17 19:39:22.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:22.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:39:22.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:22.918 -07 000000551 INF: FPGA: Recv ZSGSRD 29489
17-03-17 19:39:22.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:22.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:22.928 -07 000000608 INF: FPGA: Recv ZSGSRD 29489
17-03-17 19:39:22.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:22.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:22.938 -07 000000512 INF: FPGA: Recv ZSGSRD 29493
17-03-17 19:39:22.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:22.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:22.948 -07 000000547 INF: FPGA: Recv ZSGSRD 29484
17-03-17 19:39:22.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:22.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:22.958 -07 000000551 INF: FPGA: Recv ZSGSRD 29486
17-03-17 19:39:22.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:22.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:22.968 -07 000000551 INF: FPGA: Recv ZSGSRD 29488
17-03-17 19:39:22.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:39:22.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:22.978 -07 000000626 INF: FPGA: Recv ZSGSRD 29491
17-03-17 19:39:22.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:22.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:22.988 -07 000000541 INF: FPGA: Recv ZSGSRD 29487
17-03-17 19:39:22.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:22.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:22.998 -07 000000547 INF: FPGA: Recv ZSGSRD 29482
17-03-17 19:39:23.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:23.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:23.008 -07 000000547 INF: FPGA: Recv ZSGSRD 29493
17-03-17 19:39:23.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:23.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:23.018 -07 000000547 INF: FPGA: Recv ZPIEZORD 25150
17-03-17 19:39:23.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:23.028 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.325 V. Piezo Error = -9.5 V.
17-03-17 19:39:23.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29488 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29488 (-129.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29482 (-128.9 uncal um), Max = 29493 (-129.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:39:23.028 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29488, posNoise = 5, negNoise = 6
17-03-17 19:39:23.028 -07 000000610 INF: Z Motor: After move to -0.129760, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:23.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:39:23.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:23.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:23.028 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:23.028 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:23.028 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:39:23.028 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:23.028 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:39:23.028 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:39:23.028 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:39:23.028 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:39:23.028 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:39:23.028 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:39:23.038 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:39:23.038 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:39:23.038 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:39:23.038 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:39:23.048 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:39:23.048 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:39:23.048 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:39:23.048 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:39:23.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 28522 150\n [Camera]
17-03-17 19:39:23.258 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:39:23.658 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:39:23.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:39:23.658 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:23.658 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:23.658 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) start.
17-03-17 19:39:23.658 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:39:23.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:39:23.658 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:23.658 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:23.658 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) start.
17-03-17 19:39:23.848 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28522 788
17-03-17 19:39:23.998 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:39:24.048 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 19:39:24.048 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:39:24.048 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:24.058 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:39:24.058 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:39:24.058 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:24.058 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:24.058 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:24.058 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:39:24.068 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:39:24.198 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:39:24.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:39:24.198 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:24.308 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:24.308 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:39:24.308 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:39:24.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:39:24.318 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:24.318 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:24.318 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:39:24.388 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:39:24.388 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:39:24.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 28522 150' command took 2 ms to send, 1323 ms to get response, and 1332 ms overall
17-03-17 19:39:24.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:39:24.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.689453125, Z-Position -0.129760519647382. ------
17-03-17 19:39:24.388 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:24.698 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:39:24.698 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:39:24.698 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:24.698 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:39:24.698 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:39:24.698 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:24.698 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:39:24.698 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:39:24.698 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-17 19:39:24.708 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:39:24.718 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13639 mm
17-03-17 19:39:24.718 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:39:24.718 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:24.718 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 323 ms to get response, and 324 ms overall
17-03-17 19:39:24.718 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:39:24.718 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:39:24.718 -07 000000547 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-17 19:39:24.728 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:25.248 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 29795, sync = True, waitForSettling = False)
17-03-17 19:39:25.248 -07 000000593 INF: Z Motor: Moving to -0.136393 mm, started at -0.129761 mm, distance = -6.63 um
17-03-17 19:39:25.248 -07 000000593 INF: FPGA: Xmit ZDACW 29795\n [Z Motor]
17-03-17 19:39:26.248 -07 000000478 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:39:26.248 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:39:26.248 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1510 ms to get response, and 1523 ms overall
17-03-17 19:39:26.248 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:39:26.248 -07 000000593 INF: FPGA: 'ZDACW 29795' command took 0 ms to send, 991 ms to get response, and 999 ms overall
17-03-17 19:39:26.248 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:26.248 -07 000000547 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:26.248 -07 000000547 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:39:26.248 -07 000000547 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:39:26.248 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1520 ms to get response, and 1526 ms overall
17-03-17 19:39:26.248 -07 000000478 INF: FPGA: Recv ZDACR 29795
17-03-17 19:39:26.258 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:39:26.258 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:39:26.258 -07 000000593 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-17 19:39:26.558 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.023489,
17-03-17 19:39:26.628 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 19:39:26.628 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 385 ms overall
17-03-17 19:39:26.668 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:26.668 -07 000000478 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:39:26.678 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:39:26.678 -07 000000547 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:26.678 -07 000000547 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:39:26.678 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.843 mm, average velocity = 2.184 mm/sec
17-03-17 19:39:26.708 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:39:26.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:39:27.628 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:27.628 -07 000000478 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:39:27.638 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:27.638 -07 000000547 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:27.658 -07 000000547 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:39:27.658 -07 000000547 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:39:27.658 -07 000000547 INF: Y Motor: Moved to 71.5200 after 2934 ms (table move)
17-03-17 19:39:27.658 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136393 mm (DAC = 29795)
17-03-17 19:39:27.658 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:27.658 -07 000000593 INF: FPGA: Recv ZSGSRD 30527
17-03-17 19:39:27.668 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:39:27.668 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:27.668 -07 000000478 INF: FPGA: Recv ZSGSRD 30514
17-03-17 19:39:27.678 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:27.678 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:27.678 -07 000000462 INF: FPGA: Recv ZSGSRD 30520
17-03-17 19:39:27.688 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:27.688 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:27.688 -07 000000569 INF: FPGA: Recv ZSGSRD 30516
17-03-17 19:39:27.698 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:27.698 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:27.698 -07 000000501 INF: FPGA: Recv ZSGSRD 30524
17-03-17 19:39:27.708 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:27.708 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:27.708 -07 000000569 INF: FPGA: Recv ZSGSRD 30525
17-03-17 19:39:27.718 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:27.718 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:27.718 -07 000000593 INF: FPGA: Recv ZSGSRD 30523
17-03-17 19:39:27.728 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:27.728 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:27.728 -07 000000501 INF: FPGA: Recv ZSGSRD 30526
17-03-17 19:39:27.738 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:27.738 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:27.738 -07 000000547 INF: FPGA: Recv ZSGSRD 30515
17-03-17 19:39:27.748 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:27.748 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:27.748 -07 000000501 INF: FPGA: Recv ZSGSRD 30516
17-03-17 19:39:27.758 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:27.758 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:27.758 -07 000000478 INF: FPGA: Recv ZPIEZORD 26486
17-03-17 19:39:27.768 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:27.768 -07 000000541 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.546 V. Piezo Error = -8.9 V.
17-03-17 19:39:27.768 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30521 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30522 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30514 (-135.6 uncal um), Max = 30527 (-135.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:39:27.768 -07 000000541 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30521, posNoise = 6, negNoise = 7
17-03-17 19:39:27.768 -07 000000541 INF: Z Motor: After move to -0.136393, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:27.768 -07 000000541 INF: Z Motor: Settle wait time = 2413 ms, measure time = 106 ms (allowed 150 ms), total time = 2519 ms
17-03-17 19:39:27.768 -07 000000541 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:39:27.818 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3099 ms
17-03-17 19:39:27.818 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:39:27.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:27.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:27.818 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:27.818 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:39:27.818 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:27.818 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:27.818 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:39:27.818 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:39:27.828 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:39:27.828 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:39:27.838 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 19:39:27.838 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:39:27.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:39:27.878 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:39:28.078 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:39:28.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:39:28.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:39:28.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:39:28.118 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:39:28.118 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 19:39:28.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 19:39:28.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:39:28.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:28.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:39:28.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:39:28.318 -07 000000569 INF: Autofocus start
17-03-17 19:39:28.318 -07 000000569 INF: MeasureProfile start
17-03-17 19:39:28.318 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:28.318 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:28.328 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:39:28.328 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:39:28.328 -07 000000569 INF: MeasureProfile done
17-03-17 19:39:28.328 -07 000000569 INF: X=-4  Z correction [um]=-0.02287426
17-03-17 19:39:28.328 -07 000000569 INF: Autofocus finished
17-03-17 19:39:28.528 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:39:28.528 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 19:39:28.538 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.136396730789821. ----------
17-03-17 19:39:28.538 -07 000000610 INF: Cycle	28	Tile	15	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:39:28.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28303, sync = True, waitForSettling = True)
17-03-17 19:39:28.538 -07 000000610 INF: Z Motor: Moving to -0.129563 mm, started at -0.136397 mm, distance = 6.83 um
17-03-17 19:39:28.538 -07 000000610 INF: FPGA: Xmit ZDACW 28303\n [Z Motor]
17-03-17 19:39:28.538 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:39:28.548 -07 000000610 INF: FPGA: 'ZDACW 28303' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:39:28.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:28.548 -07 000000593 INF: FPGA: Recv ZDACR 28303
17-03-17 19:39:28.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:28.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:39:28.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:28.708 -07 000000501 INF: FPGA: Recv ZSGSRD 29456
17-03-17 19:39:28.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:28.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:28.718 -07 000000482 INF: FPGA: Recv ZSGSRD 29463
17-03-17 19:39:28.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:28.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:28.728 -07 000000547 INF: FPGA: Recv ZSGSRD 29460
17-03-17 19:39:28.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:28.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:28.738 -07 000000593 INF: FPGA: Recv ZSGSRD 29456
17-03-17 19:39:28.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:28.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:28.748 -07 000000478 INF: FPGA: Recv ZSGSRD 29456
17-03-17 19:39:28.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:28.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:28.758 -07 000000593 INF: FPGA: Recv ZSGSRD 29464
17-03-17 19:39:28.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:28.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:28.768 -07 000000462 INF: FPGA: Recv ZSGSRD 29453
17-03-17 19:39:28.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:28.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:28.778 -07 000000482 INF: FPGA: Recv ZSGSRD 29455
17-03-17 19:39:28.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:28.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:28.788 -07 000000478 INF: FPGA: Recv ZSGSRD 29458
17-03-17 19:39:28.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:28.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:28.798 -07 000000462 INF: FPGA: Recv ZSGSRD 29459
17-03-17 19:39:28.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:28.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:28.808 -07 000000541 INF: FPGA: Recv ZPIEZORD 25091
17-03-17 19:39:28.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:28.818 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.319 V. Piezo Error = -9.6 V.
17-03-17 19:39:28.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29458 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29457 (-128.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29453 (-128.8 uncal um), Max = 29464 (-128.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:39:28.818 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29458, posNoise = 6, negNoise = 5
17-03-17 19:39:28.818 -07 000000610 INF: Z Motor: After move to -0.129563, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:28.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:39:28.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:28.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:28.818 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:39:28.818 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:28.818 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:28.818 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:39:28.818 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:39:28.818 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:28.818 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:39:28.818 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:39:28.818 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:39:28.818 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:39:28.818 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:39:28.818 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:39:28.828 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:39:28.828 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:39:28.838 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:39:28.838 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:39:28.838 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:39:28.838 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:39:28.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 28479 150\n [Camera]
17-03-17 19:39:29.038 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:39:29.448 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:39:29.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:39:29.448 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:29.448 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:29.448 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) start.
17-03-17 19:39:29.448 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:39:29.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:39:29.448 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:29.458 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:29.458 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) start.
17-03-17 19:39:29.638 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28479 788
17-03-17 19:39:29.788 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:39:29.848 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:39:29.848 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:39:29.848 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:29.858 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:29.858 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:39:29.858 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 19:39:29.858 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:39:29.858 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:29.858 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:29.868 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:39:29.978 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:39:29.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:39:29.988 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:30.098 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:39:30.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:39:30.098 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:30.098 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:30.098 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:39:30.098 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:30.098 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:39:30.178 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:39:30.178 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:39:30.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 28479 150' command took 2 ms to send, 1321 ms to get response, and 1332 ms overall
17-03-17 19:39:30.178 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:39:30.178 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52001953125, Z-Position -0.129567793283129. ------
17-03-17 19:39:30.178 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:30.178 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13547 mm
17-03-17 19:39:30.178 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:39:30.498 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 19:39:30.498 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:39:30.498 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:30.498 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:39:30.498 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:39:30.498 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:30.498 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:30.508 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:39:30.508 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-17 19:39:30.508 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:39:30.518 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:30.518 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 335 ms to get response, and 339 ms overall
17-03-17 19:39:30.518 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:39:30.518 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:39:30.518 -07 000000462 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 19:39:30.518 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29594, sync = True, waitForSettling = False)
17-03-17 19:39:30.518 -07 000000569 INF: Z Motor: Moving to -0.135473 mm, started at -0.129568 mm, distance = -5.90 um
17-03-17 19:39:30.528 -07 000000569 INF: FPGA: Xmit ZDACW 29594\n [Z Motor]
17-03-17 19:39:30.538 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:31.248 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:39:31.248 -07 000000486 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:39:31.248 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:39:31.248 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 729 ms to get response, and 730 ms overall
17-03-17 19:39:31.248 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 708 ms to get response, and 730 ms overall
17-03-17 19:39:31.248 -07 000000462 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:31.248 -07 000000462 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:39:31.248 -07 000000462 INF: Y Motor: Moving 1348 steps-26
17-03-17 19:39:31.248 -07 000000569 INF: FPGA: 'ZDACW 29594' command took 0 ms to send, 718 ms to get response, and 729 ms overall
17-03-17 19:39:31.258 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:39:31.268 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:31.268 -07 000000486 INF: FPGA: Recv ZDACR 29594
17-03-17 19:39:31.278 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 19:39:31.278 -07 000000569 INF: Z Motor: MoveAbsStepped took 751 ms (did NOT wait for settling yet))
17-03-17 19:39:31.628 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 19:39:31.628 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 19:39:31.668 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:31.668 -07 000000593 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:39:31.678 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:39:31.678 -07 000000462 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:31.678 -07 000000462 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:39:31.678 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.843 mm, average velocity = 2.229 mm/sec
17-03-17 19:39:31.708 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:39:31.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:39:31.928 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.05755,
17-03-17 19:39:32.628 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:32.628 -07 000000623 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:39:32.638 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:32.638 -07 000000462 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:32.658 -07 000000462 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:39:32.658 -07 000000462 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:39:32.658 -07 000000462 INF: Y Motor: Moved to 72.3501 after 2134 ms (table move)
17-03-17 19:39:32.658 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135473 mm (DAC = 29594)
17-03-17 19:39:32.658 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:32.658 -07 000000569 INF: FPGA: Recv ZSGSRD 30380
17-03-17 19:39:32.668 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:39:32.668 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:32.668 -07 000000623 INF: FPGA: Recv ZSGSRD 30379
17-03-17 19:39:32.678 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:32.678 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:32.678 -07 000000431 INF: FPGA: Recv ZSGSRD 30373
17-03-17 19:39:32.688 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:32.688 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:32.688 -07 000000593 INF: FPGA: Recv ZSGSRD 30380
17-03-17 19:39:32.698 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:32.698 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:32.698 -07 000000486 INF: FPGA: Recv ZSGSRD 30381
17-03-17 19:39:32.708 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:32.708 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:32.708 -07 000000593 INF: FPGA: Recv ZSGSRD 30381
17-03-17 19:39:32.718 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:32.718 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:32.718 -07 000000486 INF: FPGA: Recv ZSGSRD 30384
17-03-17 19:39:32.728 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:32.728 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:32.728 -07 000000569 INF: FPGA: Recv ZSGSRD 30369
17-03-17 19:39:32.738 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:32.738 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:32.738 -07 000000623 INF: FPGA: Recv ZSGSRD 30379
17-03-17 19:39:32.748 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:32.748 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:32.748 -07 000000431 INF: FPGA: Recv ZSGSRD 30374
17-03-17 19:39:32.758 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:32.758 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:32.758 -07 000000593 INF: FPGA: Recv ZPIEZORD 26305
17-03-17 19:39:32.768 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:32.768 -07 000000501 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.516 V. Piezo Error = -9.0 V.
17-03-17 19:39:32.768 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30378 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30380 (-134.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30369 (-134.6 uncal um), Max = 30384 (-134.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:39:32.768 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30378, posNoise = 6, negNoise = 9
17-03-17 19:39:32.768 -07 000000501 INF: Z Motor: After move to -0.135473, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:32.768 -07 000000501 INF: Z Motor: Settle wait time = 2137 ms, measure time = 104 ms (allowed 150 ms), total time = 2241 ms
17-03-17 19:39:32.768 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:39:32.818 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2633 ms
17-03-17 19:39:32.818 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:39:32.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:32.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:32.818 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:32.818 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:32.818 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:39:32.818 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:32.828 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:39:32.828 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:39:32.828 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:39:32.828 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:39:32.838 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:39:32.838 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:39:32.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:39:32.888 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:39:33.088 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:39:33.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:39:33.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:39:33.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:39:33.128 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:39:33.128 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 19:39:33.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 19:39:33.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:39:33.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:33.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:39:33.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 19:39:33.228 -07 000000569 INF: Autofocus start
17-03-17 19:39:33.228 -07 000000569 INF: MeasureProfile start
17-03-17 19:39:33.228 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:33.228 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:33.238 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:39:33.238 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:39:33.238 -07 000000569 INF: MeasureProfile done
17-03-17 19:39:33.238 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:39:33.238 -07 000000569 INF: Autofocus finished
17-03-17 19:39:33.438 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:39:33.438 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:39:33.438 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135478068453549. ----------
17-03-17 19:39:33.448 -07 000000610 INF: Cycle	28	Tile	16	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:39:33.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28101, sync = True, waitForSettling = True)
17-03-17 19:39:33.448 -07 000000610 INF: Z Motor: Moving to -0.128638 mm, started at -0.135478 mm, distance = 6.84 um
17-03-17 19:39:33.448 -07 000000610 INF: FPGA: Xmit ZDACW 28101\n [Z Motor]
17-03-17 19:39:33.448 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:39:33.458 -07 000000610 INF: FPGA: 'ZDACW 28101' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:39:33.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:33.458 -07 000000431 INF: FPGA: Recv ZDACR 28101
17-03-17 19:39:33.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:33.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:39:33.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:33.618 -07 000000501 INF: FPGA: Recv ZSGSRD 29313
17-03-17 19:39:33.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:33.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:33.628 -07 000000431 INF: FPGA: Recv ZSGSRD 29319
17-03-17 19:39:33.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:33.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:33.638 -07 000000593 INF: FPGA: Recv ZSGSRD 29313
17-03-17 19:39:33.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:33.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:33.648 -07 000000431 INF: FPGA: Recv ZSGSRD 29312
17-03-17 19:39:33.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:33.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:33.658 -07 000000569 INF: FPGA: Recv ZSGSRD 29313
17-03-17 19:39:33.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:33.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:33.668 -07 000000486 INF: FPGA: Recv ZSGSRD 29314
17-03-17 19:39:33.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:33.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:33.678 -07 000000593 INF: FPGA: Recv ZSGSRD 29316
17-03-17 19:39:33.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:33.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:33.688 -07 000000462 INF: FPGA: Recv ZSGSRD 29313
17-03-17 19:39:33.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:33.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:33.698 -07 000000593 INF: FPGA: Recv ZSGSRD 29312
17-03-17 19:39:33.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:33.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:33.708 -07 000000431 INF: FPGA: Recv ZSGSRD 29314
17-03-17 19:39:33.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:33.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:33.718 -07 000000475 INF: FPGA: Recv ZPIEZORD 24926
17-03-17 19:39:33.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:33.728 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -9.6 V.
17-03-17 19:39:33.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29314 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29313 (-127.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29312 (-127.9 uncal um), Max = 29319 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 19:39:33.728 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29314, posNoise = 5, negNoise = 2
17-03-17 19:39:33.728 -07 000000610 INF: Z Motor: After move to -0.128638, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:33.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:39:33.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:33.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:33.728 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:33.728 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:33.728 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:39:33.728 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:39:33.728 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:39:33.728 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:33.728 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:39:33.728 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:39:33.728 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:39:33.728 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:39:33.738 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:39:33.738 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:39:33.738 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:39:33.738 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:39:33.748 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:39:33.748 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:39:33.748 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:39:33.748 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:39:33.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 28278 150\n [Camera]
17-03-17 19:39:33.958 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:39:34.358 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:39:34.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:39:34.358 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:39:34.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:39:34.358 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:34.358 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:34.358 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1109899536, 0x0, 418435064) start.
17-03-17 19:39:34.358 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:34.358 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:34.358 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1145321800, 0x0, 391868352) start.
17-03-17 19:39:34.548 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28278 789
17-03-17 19:39:34.698 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:39:34.758 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1109899536, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:39:34.758 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:39:34.758 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:34.758 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1145321800, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:39:34.758 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:39:34.758 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:34.768 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:39:34.768 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:39:34.768 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:39:34.768 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:39:34.898 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:39:34.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:39:34.898 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:35.008 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:35.008 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:39:35.008 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:39:35.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:39:35.008 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:35.008 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:35.008 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:39:35.088 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:39:35.088 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:39:35.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 28278 150' command took 2 ms to send, 1322 ms to get response, and 1331 ms overall
17-03-17 19:39:35.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:39:35.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128642706734716. ------
17-03-17 19:39:35.088 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:35.088 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13523 mm
17-03-17 19:39:35.088 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:39:35.088 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:39:35.088 -07 000000569 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 19:39:35.098 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:35.408 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:39:35.408 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:39:35.408 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:35.408 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:39:35.408 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:39:35.408 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:35.418 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:35.418 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:39:35.418 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 19:39:35.418 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:39:35.428 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29541, sync = True, waitForSettling = False)
17-03-17 19:39:35.428 -07 000000623 INF: Z Motor: Moving to -0.135230 mm, started at -0.128643 mm, distance = -6.59 um
17-03-17 19:39:35.428 -07 000000623 INF: FPGA: Xmit ZDACW 29541\n [Z Motor]
17-03-17 19:39:35.428 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:35.428 -07 000000501 INF: FPGA: Recv YRDPOS 148174
17-03-17 19:39:35.428 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 328 ms to get response, and 338 ms overall
17-03-17 19:39:35.428 -07 000000569 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:35.428 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 338 ms to get response, and 341 ms overall
17-03-17 19:39:35.428 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:39:35.438 -07 000000623 INF: FPGA: 'ZDACW 29541' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:39:35.438 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:39:35.438 -07 000000569 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:39:35.438 -07 000000569 INF: Y Motor: Moving 1347 steps-26
17-03-17 19:39:35.448 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:35.448 -07 000000501 INF: FPGA: Recv ZDACR 29541
17-03-17 19:39:35.458 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:39:35.458 -07 000000623 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 19:39:35.458 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:39:35.638 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:39:35.638 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 19:39:35.828 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 19:39:35.828 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:39:35.868 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:35.868 -07 000000623 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:39:35.878 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:39:35.878 -07 000000569 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:35.878 -07 000000569 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 19:39:35.878 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.843 mm, average velocity = 2.138 mm/sec
17-03-17 19:39:36.708 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:39:36.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:39:36.828 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:36.828 -07 000000501 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:39:36.838 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:36.838 -07 000000569 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:36.858 -07 000000569 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:39:36.858 -07 000000569 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:39:36.858 -07 000000569 INF: Y Motor: Moved to 73.1768 after 1763 ms (table move)
17-03-17 19:39:36.858 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135230 mm (DAC = 29541)
17-03-17 19:39:36.858 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:36.858 -07 000000501 INF: FPGA: Recv ZSGSRD 30343
17-03-17 19:39:36.868 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:39:36.868 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:36.868 -07 000000486 INF: FPGA: Recv ZSGSRD 30338
17-03-17 19:39:36.878 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:36.878 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:36.878 -07 000000623 INF: FPGA: Recv ZSGSRD 30339
17-03-17 19:39:36.888 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:36.888 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:36.888 -07 000000569 INF: FPGA: Recv ZSGSRD 30345
17-03-17 19:39:36.898 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:36.898 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:36.898 -07 000000569 INF: FPGA: Recv ZSGSRD 30343
17-03-17 19:39:36.908 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:36.908 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:36.908 -07 000000569 INF: FPGA: Recv ZSGSRD 30339
17-03-17 19:39:36.918 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:36.918 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:36.918 -07 000000623 INF: FPGA: Recv ZSGSRD 30345
17-03-17 19:39:36.928 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:36.928 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:36.928 -07 000000569 INF: FPGA: Recv ZSGSRD 30337
17-03-17 19:39:36.938 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:36.938 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:36.938 -07 000000569 INF: FPGA: Recv ZSGSRD 30331
17-03-17 19:39:36.948 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:36.948 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:36.948 -07 000000623 INF: FPGA: Recv ZSGSRD 30340
17-03-17 19:39:36.958 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:36.958 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:36.958 -07 000000501 INF: FPGA: Recv ZPIEZORD 26345
17-03-17 19:39:36.968 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:36.968 -07 000000462 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.508 V. Piezo Error = -8.8 V.
17-03-17 19:39:36.968 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30340 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30340 (-134.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30331 (-134.4 uncal um), Max = 30345 (-134.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:39:36.968 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30340, posNoise = 5, negNoise = 9
17-03-17 19:39:36.968 -07 000000462 INF: Z Motor: After move to -0.135230, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:36.968 -07 000000462 INF: Z Motor: Settle wait time = 1429 ms, measure time = 104 ms (allowed 150 ms), total time = 1533 ms
17-03-17 19:39:36.968 -07 000000462 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:39:37.018 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1922 ms
17-03-17 19:39:37.018 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:39:37.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:37.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:37.018 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:37.018 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:37.018 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:39:37.018 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:37.018 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:39:37.018 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:39:37.028 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:39:37.028 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:39:37.028 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:39:37.028 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:39:37.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:39:37.078 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:39:37.278 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:39:37.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:39:37.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:39:37.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:39:37.288 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 4.02213,
17-03-17 19:39:37.318 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:39:37.318 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 19:39:37.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 287 ms overall
17-03-17 19:39:37.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 19:39:37.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:37.398 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:39:37.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 19:39:37.418 -07 000000486 INF: Autofocus start
17-03-17 19:39:37.418 -07 000000486 INF: MeasureProfile start
17-03-17 19:39:37.418 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:37.418 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:37.428 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:39:37.428 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:39:37.428 -07 000000486 INF: MeasureProfile done
17-03-17 19:39:37.428 -07 000000486 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:39:37.428 -07 000000486 INF: Autofocus finished
17-03-17 19:39:37.628 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:39:37.628 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:39:37.628 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.135233948392162. ----------
17-03-17 19:39:37.628 -07 000000610 INF: Cycle	28	Tile	17	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:39:37.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28065, sync = True, waitForSettling = True)
17-03-17 19:39:37.638 -07 000000610 INF: Z Motor: Moving to -0.128473 mm, started at -0.135234 mm, distance = 6.76 um
17-03-17 19:39:37.648 -07 000000610 INF: FPGA: Xmit ZDACW 28065\n [Z Motor]
17-03-17 19:39:37.648 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:39:37.658 -07 000000610 INF: FPGA: 'ZDACW 28065' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:39:37.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:37.658 -07 000000541 INF: FPGA: Recv ZDACR 28065
17-03-17 19:39:37.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:37.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:39:37.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:37.818 -07 000000501 INF: FPGA: Recv ZSGSRD 29288
17-03-17 19:39:37.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:37.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:37.828 -07 000000569 INF: FPGA: Recv ZSGSRD 29291
17-03-17 19:39:37.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:37.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:37.838 -07 000000501 INF: FPGA: Recv ZSGSRD 29284
17-03-17 19:39:37.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:37.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:37.848 -07 000000626 INF: FPGA: Recv ZSGSRD 29284
17-03-17 19:39:37.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:37.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:37.858 -07 000000512 INF: FPGA: Recv ZSGSRD 29285
17-03-17 19:39:37.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:37.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:37.868 -07 000000547 INF: FPGA: Recv ZSGSRD 29291
17-03-17 19:39:37.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:37.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:37.878 -07 000000512 INF: FPGA: Recv ZSGSRD 29290
17-03-17 19:39:37.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:37.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:37.888 -07 000000512 INF: FPGA: Recv ZSGSRD 29288
17-03-17 19:39:37.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:37.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:37.898 -07 000000486 INF: FPGA: Recv ZSGSRD 29288
17-03-17 19:39:37.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:37.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:37.908 -07 000000623 INF: FPGA: Recv ZSGSRD 29288
17-03-17 19:39:37.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:37.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:37.918 -07 000000626 INF: FPGA: Recv ZPIEZORD 24947
17-03-17 19:39:37.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:37.928 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.282 V. Piezo Error = -9.5 V.
17-03-17 19:39:37.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29288 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29288 (-127.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29284 (-127.7 uncal um), Max = 29291 (-127.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:39:37.928 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29288, posNoise = 3, negNoise = 4
17-03-17 19:39:37.928 -07 000000610 INF: Z Motor: After move to -0.128473, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:37.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 19:39:37.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:37.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:37.928 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:37.928 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:37.928 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:39:37.928 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:39:37.928 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:39:37.928 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:37.928 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:39:37.928 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:39:37.928 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:39:37.928 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:39:37.928 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:39:37.928 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:39:37.938 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:39:37.938 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:39:37.948 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:39:37.948 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:39:37.948 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:39:37.948 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:39:37.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 28242 150\n [Camera]
17-03-17 19:39:38.148 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:39:38.558 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:39:38.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:39:38.558 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:38.558 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:38.558 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) start.
17-03-17 19:39:38.558 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:39:38.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:39:38.558 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:38.558 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:38.558 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) start.
17-03-17 19:39:38.748 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28242 788
17-03-17 19:39:38.898 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:39:38.958 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:39:38.958 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:39:38.958 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:38.958 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:38.958 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:39:38.958 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 19:39:38.958 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:39:38.958 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:38.958 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:38.968 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:39:39.088 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:39:39.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:39:39.088 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:39.198 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:39:39.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:39:39.208 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:39.208 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:39.208 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:39:39.208 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:39.208 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:39:39.278 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:39:39.288 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:39:39.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 28242 150' command took 4 ms to send, 1320 ms to get response, and 1332 ms overall
17-03-17 19:39:39.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:39:39.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.12847567721903. ------
17-03-17 19:39:39.288 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:39.288 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13486 mm
17-03-17 19:39:39.288 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:39:39.288 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:39:39.288 -07 000000623 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 19:39:39.288 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29461, sync = True, waitForSettling = False)
17-03-17 19:39:39.288 -07 000000462 INF: Z Motor: Moving to -0.134864 mm, started at -0.128476 mm, distance = -6.39 um
17-03-17 19:39:39.298 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:39.308 -07 000000462 INF: FPGA: Xmit ZDACW 29461\n [Z Motor]
17-03-17 19:39:39.608 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:39:39.608 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:39:39.608 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:39.608 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:39:39.608 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:39:39.608 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:39.608 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:39.618 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:39:39.618 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 19:39:39.618 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:39:39.628 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:39.628 -07 000000486 INF: FPGA: Recv YRDPOS 149867
17-03-17 19:39:39.628 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:39:39.628 -07 000000462 INF: FPGA: 'ZDACW 29461' command took 0 ms to send, 314 ms to get response, and 335 ms overall
17-03-17 19:39:39.628 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:39.628 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 323 ms to get response, and 335 ms overall
17-03-17 19:39:39.628 -07 000000623 INF: Y Motor: Encoder = 149867 = motor step 117083.6 = 73.1772 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:39.628 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 334 ms to get response, and 338 ms overall
17-03-17 19:39:39.628 -07 000000623 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:39:39.628 -07 000000623 INF: Y Motor: Moving 1353 steps-32
17-03-17 19:39:39.628 -07 000000486 INF: FPGA: Recv ZDACR 29461
17-03-17 19:39:39.638 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:39:39.638 -07 000000462 INF: Z Motor: MoveAbsStepped took 341 ms (did NOT wait for settling yet))
17-03-17 19:39:39.638 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:39:39.648 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:39:39.838 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:39:39.838 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 207 ms overall
17-03-17 19:39:40.028 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 19:39:40.028 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 393 ms overall
17-03-17 19:39:40.048 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:40.058 -07 000000462 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:39:40.068 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:40.068 -07 000000623 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:40.068 -07 000000623 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:39:40.068 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.846 mm, average velocity = 2.152 mm/sec
17-03-17 19:39:41.018 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:41.018 -07 000000462 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:39:41.028 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:41.028 -07 000000623 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:41.038 -07 000000623 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:39:41.038 -07 000000623 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:39:41.038 -07 000000623 INF: Y Motor: Moved to 74.0088 after 1748 ms (table move)
17-03-17 19:39:41.048 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134864 mm (DAC = 29461)
17-03-17 19:39:41.048 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:41.048 -07 000000482 INF: FPGA: Recv ZSGSRD 30279
17-03-17 19:39:41.058 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:39:41.058 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:41.058 -07 000000486 INF: FPGA: Recv ZSGSRD 30278
17-03-17 19:39:41.068 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:41.068 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:41.068 -07 000000462 INF: FPGA: Recv ZSGSRD 30279
17-03-17 19:39:41.078 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:41.078 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:41.078 -07 000000623 INF: FPGA: Recv ZSGSRD 30286
17-03-17 19:39:41.088 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:41.088 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:41.088 -07 000000486 INF: FPGA: Recv ZSGSRD 30284
17-03-17 19:39:41.098 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:41.098 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:41.098 -07 000000486 INF: FPGA: Recv ZSGSRD 30284
17-03-17 19:39:41.108 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:41.108 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:41.108 -07 000000462 INF: FPGA: Recv ZSGSRD 30287
17-03-17 19:39:41.118 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:41.118 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:41.118 -07 000000486 INF: FPGA: Recv ZSGSRD 30283
17-03-17 19:39:41.128 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:41.128 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:41.128 -07 000000623 INF: FPGA: Recv ZSGSRD 30286
17-03-17 19:39:41.138 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:41.138 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:41.138 -07 000000486 INF: FPGA: Recv ZSGSRD 30280
17-03-17 19:39:41.148 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:41.148 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:41.148 -07 000000486 INF: FPGA: Recv ZPIEZORD 26295
17-03-17 19:39:41.158 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:41.158 -07 000000547 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.495 V. Piezo Error = -8.8 V.
17-03-17 19:39:41.158 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30283 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30284 (-134.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30278 (-134.0 uncal um), Max = 30287 (-134.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:39:41.158 -07 000000547 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30283, posNoise = 4, negNoise = 5
17-03-17 19:39:41.158 -07 000000547 INF: Z Motor: After move to -0.134864, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:41.158 -07 000000547 INF: Z Motor: Settle wait time = 1753 ms, measure time = 108 ms (allowed 150 ms), total time = 1861 ms
17-03-17 19:39:41.158 -07 000000547 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:39:41.208 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1914 ms
17-03-17 19:39:41.208 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:39:41.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:41.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:41.208 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:41.208 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:39:41.208 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:41.208 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:41.208 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:39:41.208 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:39:41.218 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:39:41.218 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:39:41.218 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:39:41.218 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:39:41.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:39:41.268 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:39:41.468 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:39:41.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:39:41.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:39:41.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:39:41.508 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:39:41.508 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 19:39:41.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 19:39:41.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:39:41.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:41.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:39:41.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:39:41.608 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:41.608 -07 000000462 INF: Autofocus start
17-03-17 19:39:41.608 -07 000000462 INF: MeasureProfile start
17-03-17 19:39:41.608 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:41.618 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:39:41.618 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:39:41.618 -07 000000462 INF: MeasureProfile done
17-03-17 19:39:41.618 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:39:41.618 -07 000000462 INF: Autofocus finished
17-03-17 19:39:41.708 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:39:41.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:39:41.818 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:39:41.818 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:39:41.818 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.134867768300082. ----------
17-03-17 19:39:41.818 -07 000000610 INF: Cycle	28	Tile	18	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:39:41.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27985, sync = True, waitForSettling = True)
17-03-17 19:39:41.828 -07 000000610 INF: Z Motor: Moving to -0.128107 mm, started at -0.134868 mm, distance = 6.76 um
17-03-17 19:39:41.828 -07 000000610 INF: FPGA: Xmit ZDACW 27985\n [Z Motor]
17-03-17 19:39:41.828 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:39:41.838 -07 000000610 INF: FPGA: 'ZDACW 27985' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:39:41.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:41.838 -07 000000482 INF: FPGA: Recv ZDACR 27985
17-03-17 19:39:41.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:41.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:39:41.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:41.998 -07 000000593 INF: FPGA: Recv ZSGSRD 29232
17-03-17 19:39:42.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:42.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:42.008 -07 000000482 INF: FPGA: Recv ZSGSRD 29232
17-03-17 19:39:42.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:42.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:42.018 -07 000000462 INF: FPGA: Recv ZSGSRD 29231
17-03-17 19:39:42.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:42.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:42.028 -07 000000482 INF: FPGA: Recv ZSGSRD 29232
17-03-17 19:39:42.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:42.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:42.038 -07 000000593 INF: FPGA: Recv ZSGSRD 29236
17-03-17 19:39:42.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:42.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:42.048 -07 000000482 INF: FPGA: Recv ZSGSRD 29241
17-03-17 19:39:42.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:42.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:42.058 -07 000000547 INF: FPGA: Recv ZSGSRD 29230
17-03-17 19:39:42.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:42.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:42.068 -07 000000462 INF: FPGA: Recv ZSGSRD 29229
17-03-17 19:39:42.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:42.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:42.078 -07 000000547 INF: FPGA: Recv ZSGSRD 29230
17-03-17 19:39:42.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:42.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:42.088 -07 000000462 INF: FPGA: Recv ZSGSRD 29227
17-03-17 19:39:42.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:42.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:42.098 -07 000000593 INF: FPGA: Recv ZPIEZORD 24922
17-03-17 19:39:42.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:42.108 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.270 V. Piezo Error = -9.5 V.
17-03-17 19:39:42.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29232 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29232 (-127.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29227 (-127.3 uncal um), Max = 29241 (-127.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:39:42.108 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29232, posNoise = 9, negNoise = 5
17-03-17 19:39:42.108 -07 000000610 INF: Z Motor: After move to -0.128107, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:42.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:39:42.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:42.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:42.108 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:42.108 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:42.108 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:39:42.108 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:42.108 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:39:42.108 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:39:42.108 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:39:42.108 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:39:42.108 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:39:42.108 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:39:42.118 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:39:42.118 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:39:42.118 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:39:42.118 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:39:42.128 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:39:42.128 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:39:42.128 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:39:42.128 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:39:42.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 28162 150\n [Camera]
17-03-17 19:39:42.328 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:39:42.658 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.997626,
17-03-17 19:39:42.738 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:39:42.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:39:42.738 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:42.738 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:42.738 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) start.
17-03-17 19:39:42.738 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:39:42.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:39:42.738 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:42.738 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:42.738 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) start.
17-03-17 19:39:42.928 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28162 788
17-03-17 19:39:43.078 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:39:43.138 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:39:43.138 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:39:43.138 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:43.138 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 19:39:43.138 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:39:43.138 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:43.138 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:39:43.138 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:43.138 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:43.148 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:39:43.268 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:39:43.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:39:43.268 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:43.388 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:43.388 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:39:43.388 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:39:43.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:39:43.388 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:43.388 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:43.388 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:39:43.458 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:39:43.458 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:39:43.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 28162 150' command took 2 ms to send, 1327 ms to get response, and 1332 ms overall
17-03-17 19:39:43.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:39:43.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.128115921339091. ------
17-03-17 19:39:43.468 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:43.468 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13452 mm
17-03-17 19:39:43.468 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:39:43.468 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:39:43.468 -07 000000462 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 19:39:43.468 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29386, sync = True, waitForSettling = False)
17-03-17 19:39:43.468 -07 000000551 INF: Z Motor: Moving to -0.134520 mm, started at -0.128116 mm, distance = -6.40 um
17-03-17 19:39:43.468 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:43.478 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:39:43.478 -07 000000551 INF: FPGA: Xmit ZDACW 29386\n [Z Motor]
17-03-17 19:39:43.478 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:39:43.488 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:43.488 -07 000000551 INF: FPGA: 'ZDACW 29386' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:39:43.488 -07 000000608 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:39:43.498 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:39:43.498 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:39:43.498 -07 000000462 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:43.498 -07 000000462 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:39:43.498 -07 000000462 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:39:43.508 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:43.508 -07 000000608 INF: FPGA: Recv ZDACR 29386
17-03-17 19:39:43.518 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:39:43.518 -07 000000551 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 19:39:43.518 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:39:43.698 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:39:43.698 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:39:43.768 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 19:39:43.768 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:39:43.768 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:43.778 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 19:39:43.778 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:39:43.778 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:43.778 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:43.778 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:39:43.778 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 19:39:43.788 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:39:43.888 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:39:43.888 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 19:39:43.918 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:43.918 -07 000000569 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:39:43.928 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:43.928 -07 000000462 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:43.928 -07 000000462 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 19:39:43.928 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.136 mm/sec
17-03-17 19:39:44.878 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:44.878 -07 000000569 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:39:44.888 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:39:44.888 -07 000000462 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:44.898 -07 000000462 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:39:44.898 -07 000000462 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:39:44.898 -07 000000462 INF: Y Motor: Moved to 74.8330 after 1429 ms (table move)
17-03-17 19:39:44.898 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134520 mm (DAC = 29386)
17-03-17 19:39:44.898 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:44.908 -07 000000431 INF: FPGA: Recv ZSGSRD 30226
17-03-17 19:39:44.908 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:39:44.908 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:44.908 -07 000000569 INF: FPGA: Recv ZSGSRD 30237
17-03-17 19:39:44.918 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:39:44.918 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:44.918 -07 000000551 INF: FPGA: Recv ZSGSRD 30224
17-03-17 19:39:44.928 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:44.928 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:44.928 -07 000000569 INF: FPGA: Recv ZSGSRD 30222
17-03-17 19:39:44.938 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:44.938 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:44.938 -07 000000431 INF: FPGA: Recv ZSGSRD 30225
17-03-17 19:39:44.948 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:44.948 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:44.948 -07 000000569 INF: FPGA: Recv ZSGSRD 30232
17-03-17 19:39:44.958 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:44.958 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:44.958 -07 000000431 INF: FPGA: Recv ZSGSRD 30233
17-03-17 19:39:44.968 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:44.968 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:44.968 -07 000000462 INF: FPGA: Recv ZSGSRD 30232
17-03-17 19:39:44.978 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:44.978 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:44.978 -07 000000431 INF: FPGA: Recv ZSGSRD 30231
17-03-17 19:39:44.988 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:44.988 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:44.988 -07 000000431 INF: FPGA: Recv ZSGSRD 30229
17-03-17 19:39:44.998 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:44.998 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:44.998 -07 000000569 INF: FPGA: Recv ZPIEZORD 26225
17-03-17 19:39:45.008 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:45.008 -07 000000593 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.484 V. Piezo Error = -8.8 V.
17-03-17 19:39:45.008 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30229 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30230 (-133.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30222 (-133.7 uncal um), Max = 30237 (-133.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:39:45.008 -07 000000593 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30229, posNoise = 8, negNoise = 7
17-03-17 19:39:45.008 -07 000000593 INF: Z Motor: After move to -0.134520, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:45.008 -07 000000593 INF: Z Motor: Settle wait time = 1431 ms, measure time = 104 ms (allowed 150 ms), total time = 1535 ms
17-03-17 19:39:45.008 -07 000000593 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:39:45.058 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 19:39:45.058 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:39:45.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:45.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:45.058 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:45.058 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:45.058 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:39:45.058 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:45.058 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:39:45.058 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:39:45.068 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:39:45.068 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:39:45.078 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:39:45.078 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:39:45.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:39:45.128 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:39:45.328 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:39:45.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:39:45.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:39:45.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:39:45.358 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:39:45.368 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 19:39:45.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:39:45.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:39:45.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:45.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:39:45.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:39:45.468 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:39:45.468 -07 000000551 INF: Autofocus start
17-03-17 19:39:45.468 -07 000000551 INF: MeasureProfile start
17-03-17 19:39:45.468 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:39:45.478 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:39:45.478 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:39:45.478 -07 000000551 INF: MeasureProfile done
17-03-17 19:39:45.478 -07 000000551 INF: X=8  Z correction [um]=0.01453479
17-03-17 19:39:45.478 -07 000000551 INF: Autofocus finished
17-03-17 19:39:45.678 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:39:45.678 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:39:45.678 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.134520860844427. ----------
17-03-17 19:39:45.678 -07 000000610 INF: Cycle	28	Tile	19	Exposure Settings		A	403	G	194	T	194	C	403
17-03-17 19:39:45.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27902, sync = True, waitForSettling = True)
17-03-17 19:39:45.688 -07 000000610 INF: Z Motor: Moving to -0.127727 mm, started at -0.134521 mm, distance = 6.79 um
17-03-17 19:39:45.688 -07 000000610 INF: FPGA: Xmit ZDACW 27902\n [Z Motor]
17-03-17 19:39:45.688 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:39:45.698 -07 000000610 INF: FPGA: 'ZDACW 27902' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:45.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:39:45.698 -07 000000551 INF: FPGA: Recv ZDACR 27902
17-03-17 19:39:45.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:45.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:39:45.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:45.858 -07 000000551 INF: FPGA: Recv ZSGSRD 29171
17-03-17 19:39:45.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:45.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:45.868 -07 000000462 INF: FPGA: Recv ZSGSRD 29169
17-03-17 19:39:45.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:45.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:45.878 -07 000000462 INF: FPGA: Recv ZSGSRD 29170
17-03-17 19:39:45.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:45.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:45.888 -07 000000551 INF: FPGA: Recv ZSGSRD 29173
17-03-17 19:39:45.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:45.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:45.898 -07 000000462 INF: FPGA: Recv ZSGSRD 29171
17-03-17 19:39:45.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:45.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:45.908 -07 000000551 INF: FPGA: Recv ZSGSRD 29170
17-03-17 19:39:45.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:45.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:45.918 -07 000000431 INF: FPGA: Recv ZSGSRD 29174
17-03-17 19:39:45.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:45.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:45.928 -07 000000462 INF: FPGA: Recv ZSGSRD 29175
17-03-17 19:39:45.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:45.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:45.938 -07 000000462 INF: FPGA: Recv ZSGSRD 29176
17-03-17 19:39:45.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:45.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:39:45.948 -07 000000551 INF: FPGA: Recv ZSGSRD 29169
17-03-17 19:39:45.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:45.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:39:45.958 -07 000000431 INF: FPGA: Recv ZPIEZORD 24862
17-03-17 19:39:45.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:45.968 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.258 V. Piezo Error = -9.5 V.
17-03-17 19:39:45.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29172 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29171 (-127.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29169 (-126.9 uncal um), Max = 29176 (-127.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:39:45.968 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29172, posNoise = 4, negNoise = 3
17-03-17 19:39:45.968 -07 000000610 INF: Z Motor: After move to -0.127727, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:39:45.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:39:45.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:39:45.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:39:45.968 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:39:45.968 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:39:45.968 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:39:45.968 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:39:45.968 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:39:45.968 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:39:45.968 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:39:45.968 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:39:45.968 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:39:45.968 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:39:45.968 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:39:45.968 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:39:45.968 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:39:45.978 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:39:45.978 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:39:45.978 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:39:45.978 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:39:45.978 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:39:45.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 403 403 194 194 28078 150\n [Camera]
17-03-17 19:39:46.188 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:39:46.588 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-17 19:39:46.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-17 19:39:46.588 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:46.588 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:46.588 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) start.
17-03-17 19:39:46.588 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-17 19:39:46.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-17 19:39:46.588 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:46.598 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:46.598 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) start.
17-03-17 19:39:46.708 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:39:46.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 27. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:39:46.778 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28078 788
17-03-17 19:39:46.938 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-17 19:39:46.968 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1145321800, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:39:46.968 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:39:46.968 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:46.968 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:39:46.968 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:39:46.968 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:46.978 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:39:46.978 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:39:46.978 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:39:46.978 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:39:47.128 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1132
17-03-17 19:39:47.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1132
17-03-17 19:39:47.128 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:39:47.238 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1132
17-03-17 19:39:47.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1132
17-03-17 19:39:47.238 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:39:47.248 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:39:47.248 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:39:47.248 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:39:47.248 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:39:47.318 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1324
17-03-17 19:39:47.318 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:39:47.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 403 403 194 194 28078 150' command took 2 ms to send, 1325 ms to get response, and 1332 ms overall
17-03-17 19:39:47.638 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:39:47.638 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:39:47.638 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:47.638 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:39:47.648 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:39:47.648 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:39:47.648 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:39:47.648 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 19:39:47.648 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:39:47.648 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-17 19:39:47.648 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:39:47.698 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 19:39:47.698 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:39:47.738 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 19:39:47.748 -07 000000610 INF: Enabling Skipping AutoFocus in the next 1 cycles.
17-03-17 19:39:47.748 -07 000000610 INF: Imaging Cycle 28: ScanTilesCommand Cycle 28 time end. Duration was 168488 ms.
17-03-17 19:39:47.748 -07 000000610 INF: =================== Cycle #28 ===================
17-03-17 19:39:47.748 -07 000000610 INF: ===================  ===================
17-03-17 19:39:47.748 -07 000000462 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:39:47.758 -07 000000626 INF: FPGA: Recv EXLED1ADCR 27
17-03-17 19:39:47.758 -07 000000462 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:39:47.758 -07 000000462 INF: GreenLED: Using Green data: Photodiode ADC 27 --> 0.0 mW (old method), or 2.0 mW (new method). Difference = 2.0 mW
17-03-17 19:39:47.758 -07 000000462 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 28, FrontChillerTemperature: 3.978563, FrontChillerHeatSinkTemperature: 0.198763, AmbientTemperature: 18.92669, FlowCellCompartmentTemperature: 21.98817, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.62894, GreenLEDSensorTemperature: 26.18564, PhotodiodePowerAdcGreen: 27, PhotodiodePowerMwGreen: 2.018235
17-03-17 19:39:47.778 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.