17-03-17 19:39:47.838 -07 000000610 INF: =================== Cycle #29 ===================
17-03-17 19:39:47.838 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 19:39:47.838 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-17 19:39:47.838 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:47.838 -07 000000551 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:39:47.848 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:39:47.848 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:47.848 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 19:39:47.848 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 19:39:47.848 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 19:39:47.958 -07 000000462 INF: FPGA: Recv YMVTO 154377 871
17-03-17 19:39:47.958 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 115 ms overall
17-03-17 19:39:47.958 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 19:39:47.958 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 871 steps (0.544 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 19:39:47.958 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.720 mm/sec
17-03-17 19:39:48.028 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.978563,
17-03-17 19:39:50.958 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:39:50.958 -07 000000626 INF: FPGA: Recv YRDPOS 154381
17-03-17 19:39:50.968 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:50.968 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:39:50.978 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:39:50.978 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 4 counts (0.002 mm)
17-03-17 19:39:50.978 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3142 ms
17-03-17 19:39:50.988 -07 000000610 INF: =================== Cycle #29, Flow Cell Temp 60° ===================
17-03-17 19:39:50.988 -07 000000610 INF: =================== Cycle #29, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 19:39:50.988 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 19:39:50.988 -07 000000431 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:39:50.998 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:39:50.998 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:39:50.998 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-17 19:39:51.008 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:39:51.008 -07 000000610 INF: =================== Cycle #29, Flow Cell Temp 60° ===================
17-03-17 19:39:51.008 -07 000000610 INF: =================== Cycle #29 ===================
17-03-17 19:39:51.008 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:39:51.008 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:39:51.038 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:39:51.038 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 19:39:51.038 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:39:51.338 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:39:51.358 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:39:51.358 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:39:51.408 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:39:51.428 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:39:51.428 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:39:51.528 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3) ===================
17-03-17 19:39:51.528 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:39:51.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:39:51.598 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:39:51.598 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:39:51.598 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:39:51.708 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:39:51.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=350, R2=374, Total=724. Warn if over 250 bubbles per interval.
17-03-17 19:39:51.728 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:39:51.768 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:39:53.408 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.969015,
17-03-17 19:39:54.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:39:54.928 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:39:55.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:39:55.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:39:55.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:39:55.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:39:55.828 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:39:55.828 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3) ===================
17-03-17 19:39:55.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:39:55.988 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:39:55.988 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:39:56.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:39:56.148 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:39:56.148 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:39:56.148 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:39:56.278 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:39:56.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:39:56.708 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 5
17-03-17 19:39:56.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=5, R2=2, Total=7. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=355, R2=376, Total=731. Warn if over 250 bubbles per interval.
17-03-17 19:39:56.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:39:56.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:39:56.768 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:39:56.768 -07 000000610 INF: =================== Cycle #29 ===================
17-03-17 19:39:57.988 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:39:57.988 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 19:39:57.988 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:39:58.008 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:39:58.008 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 19:39:58.008 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 19:39:58.148 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:39:58.168 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 19:39:58.168 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 19:39:58.218 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:39:58.238 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:39:58.238 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:39:58.338 -07 000000610 INF: =================== Cycle #29, Pumping Reagent CMS (4) ===================
17-03-17 19:39:58.338 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:39:58.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:39:58.368 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:39:58.368 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:39:58.368 -07 000000610 INF: =================== Cycle #29, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 19:39:58.498 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:39:58.538 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:39:58.768 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.011254,
17-03-17 19:39:59.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:40:00.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:40:00.428 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:40:00.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:40:00.458 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:40:00.458 -07 000000610 INF: =================== Cycle #29, Pumping Reagent CMS (4) ===================
17-03-17 19:40:00.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:40:00.618 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:40:00.618 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:40:00.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:40:00.778 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:40:00.778 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:40:00.778 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:40:00.908 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:40:00.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:40:01.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:40:01.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:40:01.398 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:40:01.398 -07 000000610 INF: =================== Cycle #29 ===================
17-03-17 19:40:01.708 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 6
17-03-17 19:40:01.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=6, R2=7, Total=13. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=361, R2=383, Total=744. Warn if over 250 bubbles per interval.
17-03-17 19:40:02.618 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:40:02.618 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:40:02.618 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:40:02.638 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:40:02.638 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 19:40:02.638 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 19:40:02.788 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:40:02.808 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 19:40:02.808 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 19:40:02.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:40:02.878 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:40:02.878 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:40:02.978 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3) ===================
17-03-17 19:40:02.978 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:40:02.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:40:03.008 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:40:03.008 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:40:03.008 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:40:03.138 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:40:03.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:40:04.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:40:04.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:40:04.078 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:40:04.078 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3) ===================
17-03-17 19:40:04.138 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.007176,
17-03-17 19:40:04.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:40:04.238 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:40:04.238 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:40:04.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:40:04.398 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:40:04.398 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:40:04.398 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:40:04.528 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:40:04.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:40:04.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:40:05.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:40:05.018 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:40:05.018 -07 000000610 INF: =================== Cycle #29 ===================
17-03-17 19:40:05.018 -07 000000626 INF: WaitCommand(10000) start
17-03-17 19:40:05.018 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:40:05.018 -07 000000501 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:40:06.238 -07 000000501 INF: AsyncDelayTimer waited 1215ms
17-03-17 19:40:06.238 -07 000000501 INF: LanePump: Xmit /1?\r
17-03-17 19:40:06.268 -07 000000501 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:40:06.268 -07 000000501 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:40:06.398 -07 000000501 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:40:06.438 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:40:06.708 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:40:06.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=361, R2=383, Total=744. Warn if over 250 bubbles per interval.
17-03-17 19:40:07.968 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-17 19:40:07.998 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:40:08.418 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-17 19:40:08.448 -07 000000501 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:40:08.448 -07 000000501 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:40:08.448 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:40:08.448 -07 000000501 INF: ===================  ===================
17-03-17 19:40:09.508 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.003063,
17-03-17 19:40:11.708 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:40:11.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=361, R2=383, Total=744. Warn if over 250 bubbles per interval.
17-03-17 19:40:14.878 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.033041,
17-03-17 19:40:15.028 -07 000000626 INF: WaitCommand(10000) end
17-03-17 19:40:15.028 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3) ===================
17-03-17 19:40:15.028 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 19:40:15.028 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:40:15.058 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:40:15.058 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:40:15.058 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:40:15.188 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 19:40:15.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:40:16.708 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:40:16.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=361, R2=383, Total=744. Warn if over 250 bubbles per interval.
17-03-17 19:40:20.248 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.030322,
17-03-17 19:40:21.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:40:21.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:40:21.708 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 19:40:21.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=362, R2=384, Total=746. Warn if over 250 bubbles per interval.
17-03-17 19:40:21.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:40:21.838 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:40:22.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:40:22.288 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:40:22.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:40:22.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:40:23.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:40:23.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:40:23.188 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 19:40:23.188 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3) ===================
17-03-17 19:40:23.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:40:23.348 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:40:23.348 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:40:23.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:40:23.508 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:40:23.508 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:40:23.508 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:40:23.638 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:40:23.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:40:24.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:40:24.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:40:24.128 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:40:24.128 -07 000000610 INF: =================== Cycle #29 ===================
17-03-17 19:40:25.348 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:40:25.348 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 19:40:25.348 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:40:25.368 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:40:25.368 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 19:40:25.368 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 19:40:25.578 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:40:25.598 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 19:40:25.598 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 19:40:25.618 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.004458,
17-03-17 19:40:25.648 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:40:25.668 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:40:25.668 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:40:25.768 -07 000000610 INF: =================== Cycle #29, Pumping Reagent IMT (1) ===================
17-03-17 19:40:25.768 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:40:25.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:40:25.798 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:40:25.798 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:40:25.798 -07 000000610 INF: =================== Cycle #29, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 19:40:25.928 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:40:25.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:40:26.708 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:40:26.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=362, R2=384, Total=746. Warn if over 250 bubbles per interval.
17-03-17 19:40:27.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:40:27.438 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:40:27.858 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:40:27.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:40:27.888 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 19:40:27.888 -07 000000610 INF: =================== Cycle #29, Pumping Reagent IMT (1) ===================
17-03-17 19:40:28.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:40:28.048 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:40:28.048 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:40:28.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:40:28.208 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:40:28.208 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:40:28.208 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:40:28.338 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:40:28.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:40:28.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:40:28.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:40:28.828 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:40:28.828 -07 000000610 INF: =================== Cycle #29 ===================
17-03-17 19:40:30.048 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:40:30.048 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:40:30.048 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:40:30.068 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:40:30.068 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 19:40:30.068 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:40:30.298 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:40:30.318 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 19:40:30.318 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 19:40:30.368 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:40:30.388 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:40:30.388 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:40:30.488 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3) ===================
17-03-17 19:40:30.488 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:40:30.488 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:40:30.518 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:40:30.518 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:40:30.518 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:40:30.648 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:40:30.688 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:40:30.998 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.966297,
17-03-17 19:40:31.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:40:31.588 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:40:31.588 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:40:31.588 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3) ===================
17-03-17 19:40:31.708 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:40:31.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=362, R2=384, Total=746. Warn if over 250 bubbles per interval.
17-03-17 19:40:31.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:40:31.748 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:40:31.748 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:40:31.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:40:31.908 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:40:31.908 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:40:31.908 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:40:32.038 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:40:32.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:40:32.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:40:32.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:40:32.528 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:40:32.528 -07 000000610 INF: =================== Cycle #29 ===================
17-03-17 19:40:32.528 -07 000000610 INF: =================== Cycle #29, Flow Cell Temp 65° ===================
17-03-17 19:40:32.528 -07 000000610 INF: =================== Cycle #29, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 19:40:32.528 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 19:40:32.528 -07 000000424 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:40:32.538 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:40:32.538 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:40:32.538 -07 000000593 INF: FPGA: Recv TEC2EN 
17-03-17 19:40:32.548 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:40:32.548 -07 000000610 INF: =================== Cycle #29, Flow Cell Temp 65° ===================
17-03-17 19:40:32.548 -07 000000610 INF: =================== Cycle #29 ===================
17-03-17 19:40:32.548 -07 000000610 INF: WaitCommand(30000) start
17-03-17 19:40:36.368 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.959467,
17-03-17 19:40:36.708 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:40:36.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=362, R2=384, Total=746. Warn if over 250 bubbles per interval.
17-03-17 19:40:41.708 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:40:41.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=362, R2=384, Total=746. Warn if over 250 bubbles per interval.
17-03-17 19:40:41.728 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.960826,
17-03-17 19:40:46.708 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:40:46.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=362, R2=384, Total=746. Warn if over 250 bubbles per interval.
17-03-17 19:40:47.098 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.986717,
17-03-17 19:40:51.708 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:40:51.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=362, R2=384, Total=746. Warn if over 250 bubbles per interval.
17-03-17 19:40:52.478 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.02213,
17-03-17 19:40:56.708 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:40:56.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=362, R2=384, Total=746. Warn if over 250 bubbles per interval.
17-03-17 19:40:57.838 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.994908,
17-03-17 19:41:01.708 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:41:01.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=362, R2=384, Total=746. Warn if over 250 bubbles per interval.
17-03-17 19:41:02.558 -07 000000610 INF: WaitCommand(30000) end
17-03-17 19:41:02.558 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3) ===================
17-03-17 19:41:02.558 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 19:41:02.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:41:02.688 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:41:02.688 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:41:02.688 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:41:02.818 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 19:41:02.858 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:41:03.208 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.994908,
17-03-17 19:41:03.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:41:03.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:41:03.428 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 19:41:03.428 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3) ===================
17-03-17 19:41:03.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:41:03.588 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:41:03.588 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:41:03.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:41:03.748 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:41:03.748 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:41:03.748 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:41:03.878 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:41:03.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:41:04.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:41:04.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:41:04.368 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:41:04.368 -07 000000610 INF: =================== Cycle #29 ===================
17-03-17 19:41:04.368 -07 000000541 INF: WaitCommand(30000) start
17-03-17 19:41:04.368 -07 000000551 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:41:04.368 -07 000000551 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:41:05.588 -07 000000551 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:41:05.588 -07 000000551 INF: LanePump: Xmit /1?\r
17-03-17 19:41:05.618 -07 000000551 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:41:05.618 -07 000000551 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:41:05.748 -07 000000551 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:41:05.788 -07 000000551 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:41:06.708 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:41:06.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=362, R2=384, Total=746. Warn if over 250 bubbles per interval.
17-03-17 19:41:08.128 -07 000000551 INF: LanePump: Xmit /1Q\r
17-03-17 19:41:08.158 -07 000000551 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:41:08.578 -07 000000551 INF: LanePump: Xmit /1Q\r
17-03-17 19:41:08.578 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.996267,
17-03-17 19:41:08.608 -07 000000551 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:41:08.608 -07 000000551 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 19:41:08.608 -07 000000551 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:41:08.608 -07 000000551 INF: ===================  ===================
17-03-17 19:41:11.708 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:41:11.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=362, R2=384, Total=746. Warn if over 250 bubbles per interval.
17-03-17 19:41:13.958 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.030322,
17-03-17 19:41:16.708 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:41:16.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=362, R2=384, Total=746. Warn if over 250 bubbles per interval.
17-03-17 19:41:19.318 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.0344,
17-03-17 19:41:21.708 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:41:21.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=362, R2=384, Total=746. Warn if over 250 bubbles per interval.
17-03-17 19:41:24.688 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.016692,
17-03-17 19:41:26.708 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:41:26.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=362, R2=384, Total=746. Warn if over 250 bubbles per interval.
17-03-17 19:41:30.058 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.018051,
17-03-17 19:41:31.708 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:41:31.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=362, R2=384, Total=746. Warn if over 250 bubbles per interval.
17-03-17 19:41:34.378 -07 000000541 INF: WaitCommand(30000) end
17-03-17 19:41:34.378 -07 000000610 INF: =================== Cycle #29, Flow Cell Temp 22° ===================
17-03-17 19:41:34.378 -07 000000610 INF: =================== Cycle #29, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 19:41:34.378 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 19:41:34.388 -07 000000618 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:41:34.388 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:41:34.388 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:41:34.388 -07 000000462 INF: FPGA: Recv TEC2EN 
17-03-17 19:41:34.398 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:41:34.398 -07 000000610 INF: =================== Cycle #29, Flow Cell Temp 22° ===================
17-03-17 19:41:34.398 -07 000000610 INF: =================== Cycle #29 ===================
17-03-17 19:41:34.398 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3) ===================
17-03-17 19:41:34.398 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:41:34.398 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:41:34.428 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:41:34.428 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:41:34.428 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:41:34.558 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:41:34.598 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:41:35.428 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.978563,
17-03-17 19:41:36.708 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 19:41:36.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=364, R2=386, Total=750. Warn if over 250 bubbles per interval.
17-03-17 19:41:37.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:41:37.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:41:38.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:41:38.208 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:41:38.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:41:38.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:41:38.658 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:41:38.658 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3) ===================
17-03-17 19:41:38.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:41:38.818 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:41:38.818 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:41:38.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:41:38.978 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:41:38.978 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:41:38.978 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:41:39.108 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:41:39.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:41:39.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:41:39.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:41:39.598 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:41:39.598 -07 000000610 INF: =================== Cycle #29 ===================
17-03-17 19:41:40.798 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.988112,
17-03-17 19:41:40.818 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:41:40.818 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 19:41:40.818 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:41:40.838 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:41:40.838 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 19:41:40.838 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 19:41:40.988 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:41:41.008 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:41:41.008 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:41:41.058 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:41:41.078 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:41:41.078 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:41:41.178 -07 000000610 INF: =================== Cycle #29, Pumping Reagent USM (2) ===================
17-03-17 19:41:41.178 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:41:41.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:41:41.208 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:41:41.208 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:41:41.208 -07 000000610 INF: =================== Cycle #29, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 19:41:41.338 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:41:41.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:41:41.708 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 19:41:41.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=365, R2=386, Total=751. Warn if over 250 bubbles per interval.
17-03-17 19:41:42.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:41:42.848 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:41:43.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:41:43.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:41:43.298 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:41:43.298 -07 000000610 INF: =================== Cycle #29, Pumping Reagent USM (2) ===================
17-03-17 19:41:43.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:41:43.458 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:41:43.458 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:41:43.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:41:43.618 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:41:43.618 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:41:43.618 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:41:43.748 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:41:43.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:41:44.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:41:44.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:41:44.238 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:41:44.238 -07 000000610 INF: =================== Cycle #29 ===================
17-03-17 19:41:45.458 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 19:41:45.458 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:41:45.458 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:41:45.478 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:41:45.478 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 19:41:45.478 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:41:45.628 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:41:45.648 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:41:45.648 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:41:45.698 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:41:45.718 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:41:45.718 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:41:45.818 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3) ===================
17-03-17 19:41:45.818 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:41:45.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:41:45.848 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:41:45.848 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:41:45.848 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:41:45.978 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:41:46.018 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:41:46.178 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.973092,
17-03-17 19:41:46.708 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 19:41:46.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=365, R2=387, Total=752. Warn if over 250 bubbles per interval.
17-03-17 19:41:46.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:41:46.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:41:46.918 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:41:46.918 -07 000000610 INF: =================== Cycle #29, Pumping Reagent PR2 (3) ===================
17-03-17 19:41:47.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:41:47.078 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:41:47.078 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:41:47.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:41:47.238 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:41:47.238 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:41:47.238 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:41:47.368 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:41:47.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:41:47.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:41:47.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:41:47.858 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:41:47.858 -07 000000610 INF: =================== Cycle #29 ===================
17-03-17 19:41:47.858 -07 000000431 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:41:47.858 -07 000000569 INF: WaitCommand(10000) start
17-03-17 19:41:47.858 -07 000000431 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:41:49.078 -07 000000431 INF: AsyncDelayTimer waited 1213ms
17-03-17 19:41:49.078 -07 000000431 INF: LanePump: Xmit /1?\r
17-03-17 19:41:49.108 -07 000000431 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:41:49.108 -07 000000431 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:41:49.238 -07 000000431 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:41:49.278 -07 000000431 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:41:50.808 -07 000000431 INF: LanePump: Xmit /1Q\r
17-03-17 19:41:50.838 -07 000000431 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:41:51.258 -07 000000431 INF: LanePump: Xmit /1Q\r
17-03-17 19:41:51.288 -07 000000431 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:41:51.288 -07 000000431 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:41:51.288 -07 000000431 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:41:51.288 -07 000000431 INF: ===================  ===================
17-03-17 19:41:51.538 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.000345,
17-03-17 19:41:51.708 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 19:41:51.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=387, Total=753. Warn if over 250 bubbles per interval.
17-03-17 19:41:56.708 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 19:41:56.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:41:56.908 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.015368,
17-03-17 19:41:57.868 -07 000000569 INF: WaitCommand(10000) end
17-03-17 19:41:57.868 -07 000000610 INF: =================== Cycle #29, Imaging ===================
17-03-17 19:41:57.868 -07 000000610 INF: Imaging Cycle 29: ScanTilesCommand Cycle 29 time start.
17-03-17 19:41:57.868 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 19:41:57.868 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:41:57.898 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:41:57.898 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 19:41:57.898 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 19:41:58.198 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:41:58.218 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:41:58.218 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:41:58.268 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:41:58.288 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:41:58.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:41:58.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:41:58.288 -07 000000618 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 19:41:58.288 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:41:58.288 -07 000000618 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 19:41:58.298 -07 000000593 INF: FPGA: Recv EXLED1ON 
17-03-17 19:41:58.298 -07 000000618 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:41:58.298 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 19:41:58.298 -07 000000541 INF: FPGA: Recv EXLED1ADCR 23185
17-03-17 19:41:58.308 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:41:58.308 -07 000000618 INF: RedLED: Using Red data: Photodiode ADC 23185 --> 7.4 mW (old method), or 205.5 mW (new method). Difference = 198.0 mW
17-03-17 19:41:58.308 -07 000000618 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 19:41:58.308 -07 000000541 INF: FPGA: Recv EXLED1OFF 
17-03-17 19:41:58.318 -07 000000618 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:41:58.318 -07 000000618 INF: RedLED: LED was on for 19 ms
17-03-17 19:41:58.318 -07 000000618 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 19:41:58.318 -07 000000618 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 19:41:58.318 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:41:58.318 -07 000000618 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 19:41:58.318 -07 000000424 INF: FPGA: Recv EXLED2ON 
17-03-17 19:41:58.328 -07 000000618 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:41:58.328 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:41:58.328 -07 000000462 INF: FPGA: Recv EXLED1ADCR 2097
17-03-17 19:41:58.338 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:41:58.338 -07 000000618 INF: GreenLED: Using Green data: Photodiode ADC 2097 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.3 mW
17-03-17 19:41:58.338 -07 000000618 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 19:41:58.338 -07 000000626 INF: FPGA: Recv EXLED2OFF 
17-03-17 19:41:58.348 -07 000000618 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:41:58.348 -07 000000618 INF: GreenLED: LED was on for 19 ms
17-03-17 19:41:58.348 -07 000000618 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 19:41:58.348 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:41:58.348 -07 000000551 INF: FPGA: Recv EMCUR 
17-03-17 19:41:58.358 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:41:58.358 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 19:41:58.858 -07 000000429 INF: FPGA: Recv EMOUT
17-03-17 19:41:58.858 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 19:41:58.858 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 19:41:58.858 -07 000000569 INF: FPGA: Recv EMCUR 
17-03-17 19:41:58.868 -07 000000610 INF: FPGA: 'EMCUR 75' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:41:58.868 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:41:58.868 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38134765625, Z-Position -0.127730468610586. ------
17-03-17 19:41:58.868 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:41:58.868 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17949 mm
17-03-17 19:41:58.868 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:41:58.868 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:41:58.868 -07 000000593 INF: Y Motor: Moving to 59.9126 mm, started at 75.3813 mm, delta = -15.4687 mm
17-03-17 19:41:58.868 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 39209, sync = True, waitForSettling = False)
17-03-17 19:41:58.868 -07 000000462 INF: Z Motor: Moving to -0.179487 mm, started at -0.127730 mm, distance = -51.76 um
17-03-17 19:41:58.878 -07 000000462 INF: FPGA: Xmit ZDACW 39209\n [Z Motor]
17-03-17 19:41:58.878 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:41:58.878 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:41:58.878 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:41:58.888 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:41:58.888 -07 000000462 INF: FPGA: 'ZDACW 39209' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:41:58.888 -07 000000551 INF: FPGA: Recv YRDPOS 154381
17-03-17 19:41:58.898 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:41:58.898 -07 000000593 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:41:58.898 -07 000000593 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 19:41:58.898 -07 000000593 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:41:58.898 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:41:58.908 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:41:58.908 -07 000000541 INF: FPGA: Recv ZDACR 39209
17-03-17 19:41:58.918 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:41:58.918 -07 000000462 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 19:41:58.918 -07 000000593 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:41:59.098 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:41:59.098 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:42:00.598 -07 000000382 INF: FPGA: Recv YMVTO 122703 24776
17-03-17 19:42:00.598 -07 000000593 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-17 19:42:00.598 -07 000000593 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:42:00.598 -07 000000593 INF: Y Motor: To move from 75.381 to 59.913 (-15.469 mm) should take 24750 steps, but required 24776 steps (15.485 mm). Slippage = 0.016 mm (0.00%).
17-03-17 19:42:00.598 -07 000000593 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.469 mm, average velocity = 9.073 mm/sec
17-03-17 19:42:01.708 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:42:01.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:42:02.278 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.024884,
17-03-17 19:42:03.448 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:03.448 -07 000000429 INF: FPGA: Recv YRDPOS 122697
17-03-17 19:42:03.458 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:03.458 -07 000000593 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:03.478 -07 000000593 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:42:03.478 -07 000000593 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 19:42:03.478 -07 000000593 INF: Y Motor: Moved to 59.9106 after 4606 ms
17-03-17 19:42:03.478 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179487 mm (DAC = 39209)
17-03-17 19:42:03.478 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:03.478 -07 000000593 INF: FPGA: Recv ZSGSRD 37238
17-03-17 19:42:03.488 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:42:03.488 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:03.488 -07 000000618 INF: FPGA: Recv ZSGSRD 37233
17-03-17 19:42:03.498 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:03.498 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:03.498 -07 000000618 INF: FPGA: Recv ZSGSRD 37228
17-03-17 19:42:03.508 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:03.508 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:03.508 -07 000000618 INF: FPGA: Recv ZSGSRD 37228
17-03-17 19:42:03.518 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:03.518 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:03.518 -07 000000618 INF: FPGA: Recv ZSGSRD 37221
17-03-17 19:42:03.528 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:03.528 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:03.528 -07 000000618 INF: FPGA: Recv ZSGSRD 37234
17-03-17 19:42:03.538 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:03.538 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:03.538 -07 000000593 INF: FPGA: Recv ZSGSRD 37227
17-03-17 19:42:03.548 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:03.548 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:03.548 -07 000000593 INF: FPGA: Recv ZSGSRD 37224
17-03-17 19:42:03.558 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:03.558 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:03.558 -07 000000593 INF: FPGA: Recv ZSGSRD 37231
17-03-17 19:42:03.568 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:03.568 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:03.568 -07 000000569 INF: FPGA: Recv ZSGSRD 37227
17-03-17 19:42:03.578 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:03.578 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:03.578 -07 000000424 INF: FPGA: Recv ZPIEZORD 33632
17-03-17 19:42:03.588 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:03.588 -07 000000626 INF: Z Motor: Piezo is near 51.8 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.983 V. Piezo Error = -8.0 V.
17-03-17 19:42:03.588 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37229 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37228 (-178.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 37221 (-178.5 uncal um), Max = 37238 (-178.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:42:03.588 -07 000000626 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37229, posNoise = 9, negNoise = 8
17-03-17 19:42:03.588 -07 000000626 INF: Z Motor: After move to -0.179487, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:03.588 -07 000000626 INF: Z Motor: Settle wait time = 4609 ms, measure time = 103 ms (allowed 150 ms), total time = 4712 ms
17-03-17 19:42:03.588 -07 000000626 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:42:03.638 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4765 ms
17-03-17 19:42:03.638 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:42:03.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:03.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:03.638 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:03.638 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:03.648 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:42:03.648 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:03.648 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:03.648 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:42:03.668 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 19:42:03.668 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:42:03.678 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:42:03.678 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:42:03.688 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:42:03.688 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 19:42:03.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:42:03.738 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:42:03.938 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:42:03.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:42:03.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:42:03.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) start.
17-03-17 19:42:03.978 -07 000000462 INF: FPGA: Recv @CAMSNAP 281
17-03-17 19:42:03.978 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 19:42:03.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 19:42:04.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1090818152, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 19:42:04.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:04.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:42:04.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:42:04.078 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:04.078 -07 000000593 INF: Image SNR check: start
17-03-17 19:42:04.078 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:04.088 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:42:04.088 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:42:04.088 -07 000000593 INF: Image SNR check: pass  [peak (Max-Min)=67.44]
17-03-17 19:42:04.088 -07 000000593 INF: Autofocus start
17-03-17 19:42:04.088 -07 000000593 INF: MeasureProfile start
17-03-17 19:42:04.108 -07 000000593 INF: MeasureProfile done
17-03-17 19:42:04.108 -07 000000593 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:42:04.108 -07 000000593 INF: Autofocus finished
17-03-17 19:42:04.288 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:42:04.288 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:42:04.288 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.179490345836754. ----------
17-03-17 19:42:04.288 -07 000000610 INF: Cycle	29	Tile	1	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:42:04.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37706, sync = True, waitForSettling = True)
17-03-17 19:42:04.298 -07 000000610 INF: Z Motor: Moving to -0.172607 mm, started at -0.179490 mm, distance = 6.88 um
17-03-17 19:42:04.298 -07 000000610 INF: FPGA: Xmit ZDACW 37706\n [Z Motor]
17-03-17 19:42:04.298 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:42:04.308 -07 000000610 INF: FPGA: 'ZDACW 37706' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:04.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:04.308 -07 000000618 INF: FPGA: Recv ZDACR 37706
17-03-17 19:42:04.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:04.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:42:04.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:04.468 -07 000000431 INF: FPGA: Recv ZSGSRD 36159
17-03-17 19:42:04.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:04.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:04.478 -07 000000424 INF: FPGA: Recv ZSGSRD 36170
17-03-17 19:42:04.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:42:04.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:04.488 -07 000000382 INF: FPGA: Recv ZSGSRD 36158
17-03-17 19:42:04.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:04.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:04.498 -07 000000541 INF: FPGA: Recv ZSGSRD 36153
17-03-17 19:42:04.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:04.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:04.508 -07 000000382 INF: FPGA: Recv ZSGSRD 36167
17-03-17 19:42:04.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:04.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:04.518 -07 000000541 INF: FPGA: Recv ZSGSRD 36161
17-03-17 19:42:04.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:04.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:04.528 -07 000000382 INF: FPGA: Recv ZSGSRD 36155
17-03-17 19:42:04.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:04.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:04.538 -07 000000424 INF: FPGA: Recv ZSGSRD 36157
17-03-17 19:42:04.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:04.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:04.548 -07 000000551 INF: FPGA: Recv ZSGSRD 36160
17-03-17 19:42:04.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:04.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:04.558 -07 000000541 INF: FPGA: Recv ZSGSRD 36162
17-03-17 19:42:04.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:04.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:04.568 -07 000000382 INF: FPGA: Recv ZPIEZORD 32218
17-03-17 19:42:04.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:04.578 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.754 V. Piezo Error = -8.7 V.
17-03-17 19:42:04.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36160 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36160 (-171.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36153 (-171.7 uncal um), Max = 36170 (-171.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:42:04.578 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36160, posNoise = 10, negNoise = 7
17-03-17 19:42:04.578 -07 000000610 INF: Z Motor: After move to -0.172607, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:04.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:42:04.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:04.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:04.578 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:04.578 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:04.578 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:42:04.578 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:04.578 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:42:04.578 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:42:04.578 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:04.578 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:42:04.578 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:42:04.578 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:42:04.578 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:42:04.578 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:42:04.598 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:42:04.598 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:42:04.598 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 19:42:04.598 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:42:04.608 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:42:04.608 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:42:04.618 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 19:42:04.618 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-17 19:42:04.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 37882 150\n [Camera]
17-03-17 19:42:04.818 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:42:05.228 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:42:05.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:42:05.228 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:05.228 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:05.228 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) start.
17-03-17 19:42:05.228 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:42:05.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:42:05.228 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:05.338 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:05.338 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:42:05.418 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37882 789
17-03-17 19:42:05.568 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:42:05.618 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1109899536, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:42:05.618 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:42:05.618 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:05.628 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:42:05.628 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:42:05.728 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:42:05.728 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:42:05.728 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:05.728 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:42:05.738 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-17 19:42:05.758 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:42:05.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:42:05.758 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:05.768 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:42:05.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:42:05.768 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:05.768 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:05.768 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:42:05.768 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:05.768 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:42:05.948 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:42:05.958 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:42:05.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 37882 150' command took 2 ms to send, 1320 ms to get response, and 1332 ms overall
17-03-17 19:42:05.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:42:05.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172622863057211. ------
17-03-17 19:42:05.958 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:05.958 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17900 mm
17-03-17 19:42:05.958 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:42:05.968 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:05.968 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:42:05.968 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:42:05.968 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:42:05.968 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 39103, sync = True, waitForSettling = False)
17-03-17 19:42:05.968 -07 000000593 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 19:42:05.968 -07 000000429 INF: Z Motor: Moving to -0.179002 mm, started at -0.172623 mm, distance = -6.38 um
17-03-17 19:42:05.978 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:05.978 -07 000000424 INF: FPGA: Recv YRDPOS 122697
17-03-17 19:42:05.988 -07 000000429 INF: FPGA: Xmit ZDACW 39103\n [Z Motor]
17-03-17 19:42:05.988 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:42:05.988 -07 000000593 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:05.988 -07 000000593 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:42:05.988 -07 000000593 INF: Y Motor: Moving 1331 steps2
17-03-17 19:42:05.988 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:42:05.998 -07 000000429 INF: FPGA: 'ZDACW 39103' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:42:05.998 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:05.998 -07 000000569 INF: FPGA: Recv ZDACR 39103
17-03-17 19:42:06.008 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:42:06.008 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:06.008 -07 000000429 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:42:06.168 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:42:06.168 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:42:06.168 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:42:06.168 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:42:06.168 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:06.168 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 19:42:06.178 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:42:06.178 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:06.178 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:06.178 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 19:42:06.178 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:06.188 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 19:42:06.378 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:42:06.378 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:42:06.408 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:06.408 -07 000000424 INF: FPGA: Recv YRDPOS 124381
17-03-17 19:42:06.418 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:42:06.418 -07 000000593 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:06.418 -07 000000593 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 19:42:06.418 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-17 19:42:06.708 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:42:06.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:42:07.368 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:07.368 -07 000000424 INF: FPGA: Recv YRDPOS 124381
17-03-17 19:42:07.378 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:07.378 -07 000000593 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:07.398 -07 000000593 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:42:07.398 -07 000000593 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:42:07.398 -07 000000593 INF: Y Motor: Moved to 60.7329 after 1429 ms (table move)
17-03-17 19:42:07.398 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179002 mm (DAC = 39103)
17-03-17 19:42:07.398 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:07.398 -07 000000593 INF: FPGA: Recv ZSGSRD 37158
17-03-17 19:42:07.408 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:42:07.408 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:07.408 -07 000000593 INF: FPGA: Recv ZSGSRD 37150
17-03-17 19:42:07.418 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:07.418 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:07.418 -07 000000593 INF: FPGA: Recv ZSGSRD 37150
17-03-17 19:42:07.428 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:07.428 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:07.428 -07 000000593 INF: FPGA: Recv ZSGSRD 37158
17-03-17 19:42:07.438 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:07.438 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:07.438 -07 000000424 INF: FPGA: Recv ZSGSRD 37156
17-03-17 19:42:07.448 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:07.448 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:07.448 -07 000000424 INF: FPGA: Recv ZSGSRD 37154
17-03-17 19:42:07.458 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:07.458 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:07.458 -07 000000551 INF: FPGA: Recv ZSGSRD 37161
17-03-17 19:42:07.468 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:07.468 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:07.468 -07 000000501 INF: FPGA: Recv ZSGSRD 37155
17-03-17 19:42:07.478 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:07.478 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:07.478 -07 000000501 INF: FPGA: Recv ZSGSRD 37150
17-03-17 19:42:07.488 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:07.488 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:07.488 -07 000000501 INF: FPGA: Recv ZSGSRD 37151
17-03-17 19:42:07.498 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:07.498 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:07.498 -07 000000501 INF: FPGA: Recv ZPIEZORD 33572
17-03-17 19:42:07.508 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:07.508 -07 000000618 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.967 V. Piezo Error = -7.9 V.
17-03-17 19:42:07.508 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.0 um, Read 10 ADC samples: Avg = 37154 (-178.1 uncal um), Error = 0.9 uncal um, Median = 37154 (-178.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37150 (-178.1 uncal um), Max = 37161 (-178.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:42:07.508 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37154, posNoise = 7, negNoise = 4
17-03-17 19:42:07.508 -07 000000618 INF: Z Motor: After move to -0.179002, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:07.508 -07 000000618 INF: Z Motor: Settle wait time = 1433 ms, measure time = 104 ms (allowed 150 ms), total time = 1537 ms
17-03-17 19:42:07.508 -07 000000618 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:42:07.558 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 19:42:07.558 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:42:07.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:07.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:07.558 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:07.558 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:07.558 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:42:07.558 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:07.558 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:07.558 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:42:07.568 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:42:07.568 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:42:07.578 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:42:07.578 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:42:07.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:42:07.628 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:42:07.648 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.996267,
17-03-17 19:42:07.828 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:42:07.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:42:07.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:42:07.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:42:07.868 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:42:07.868 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:42:07.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 19:42:07.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:42:07.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:07.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:42:07.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:42:07.968 -07 000000382 INF: Autofocus start
17-03-17 19:42:07.968 -07 000000382 INF: MeasureProfile start
17-03-17 19:42:07.978 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:07.978 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:07.978 -07 000000382 INF: MeasureProfile done
17-03-17 19:42:07.978 -07 000000382 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:42:07.978 -07 000000382 INF: Autofocus finished
17-03-17 19:42:07.988 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:42:07.998 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:42:08.198 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:42:08.198 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 19:42:08.198 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.179008529926122. ----------
17-03-17 19:42:08.198 -07 000000610 INF: Cycle	29	Tile	2	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:42:08.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37618, sync = True, waitForSettling = True)
17-03-17 19:42:08.208 -07 000000610 INF: Z Motor: Moving to -0.172204 mm, started at -0.179009 mm, distance = 6.80 um
17-03-17 19:42:08.208 -07 000000610 INF: FPGA: Xmit ZDACW 37618\n [Z Motor]
17-03-17 19:42:08.208 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:42:08.218 -07 000000610 INF: FPGA: 'ZDACW 37618' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:42:08.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:08.218 -07 000000551 INF: FPGA: Recv ZDACR 37618
17-03-17 19:42:08.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:08.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:42:08.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:08.378 -07 000000424 INF: FPGA: Recv ZSGSRD 36103
17-03-17 19:42:08.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:08.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:08.388 -07 000000551 INF: FPGA: Recv ZSGSRD 36098
17-03-17 19:42:08.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:08.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:08.398 -07 000000424 INF: FPGA: Recv ZSGSRD 36095
17-03-17 19:42:08.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:08.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:08.408 -07 000000431 INF: FPGA: Recv ZSGSRD 36098
17-03-17 19:42:08.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:08.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:08.418 -07 000000424 INF: FPGA: Recv ZSGSRD 36094
17-03-17 19:42:08.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:08.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:08.428 -07 000000431 INF: FPGA: Recv ZSGSRD 36103
17-03-17 19:42:08.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:08.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:08.438 -07 000000424 INF: FPGA: Recv ZSGSRD 36097
17-03-17 19:42:08.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:08.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:08.448 -07 000000541 INF: FPGA: Recv ZSGSRD 36094
17-03-17 19:42:08.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:08.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:08.458 -07 000000618 INF: FPGA: Recv ZSGSRD 36098
17-03-17 19:42:08.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:08.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:08.468 -07 000000424 INF: FPGA: Recv ZSGSRD 36097
17-03-17 19:42:08.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:08.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:08.478 -07 000000618 INF: FPGA: Recv ZPIEZORD 32120
17-03-17 19:42:08.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:08.488 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.740 V. Piezo Error = -8.8 V.
17-03-17 19:42:08.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36098 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36098 (-171.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36094 (-171.3 uncal um), Max = 36103 (-171.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:42:08.488 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36098, posNoise = 5, negNoise = 4
17-03-17 19:42:08.488 -07 000000610 INF: Z Motor: After move to -0.172204, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:08.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:42:08.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:08.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:08.488 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:08.488 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:42:08.488 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:08.488 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:08.488 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:42:08.488 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:42:08.488 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:08.488 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:42:08.488 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:42:08.488 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:42:08.498 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:42:08.498 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:42:08.498 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:42:08.498 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:42:08.508 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:42:08.508 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:42:08.508 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:42:08.508 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:42:08.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 37794 150\n [Camera]
17-03-17 19:42:08.708 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:42:09.118 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:42:09.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:42:09.118 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:09.118 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:09.118 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:42:09.118 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:42:09.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:42:09.118 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:09.118 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:09.118 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:42:09.308 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37794 789
17-03-17 19:42:09.458 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:42:09.518 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:42:09.518 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:42:09.518 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:09.518 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:42:09.518 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:42:09.518 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:09.518 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:09.518 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:42:09.528 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:09.528 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:42:09.658 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:42:09.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:42:09.658 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:09.658 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:09.658 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:42:09.658 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:42:09.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:42:09.658 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:09.778 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:09.778 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:42:09.848 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-17 19:42:09.848 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:42:09.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 37794 150' command took 2 ms to send, 1326 ms to get response, and 1336 ms overall
17-03-17 19:42:09.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:42:09.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.172224561904422. ------
17-03-17 19:42:09.858 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17886 mm
17-03-17 19:42:09.858 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:42:09.858 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:09.858 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:42:09.858 -07 000000626 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 19:42:09.858 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 39071, sync = True, waitForSettling = False)
17-03-17 19:42:09.858 -07 000000438 INF: Z Motor: Moving to -0.178856 mm, started at -0.172225 mm, distance = -6.63 um
17-03-17 19:42:09.858 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:09.868 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:42:09.868 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:09.868 -07 000000551 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:42:09.878 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:42:09.878 -07 000000626 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:09.878 -07 000000438 INF: FPGA: Xmit ZDACW 39071\n [Z Motor]
17-03-17 19:42:09.878 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:42:09.878 -07 000000626 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:42:09.878 -07 000000626 INF: Y Motor: Moving 1343 steps-20
17-03-17 19:42:09.888 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:42:09.888 -07 000000438 INF: FPGA: 'ZDACW 39071' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:42:09.898 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:42:09.908 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:09.908 -07 000000551 INF: FPGA: Recv ZDACR 39071
17-03-17 19:42:09.918 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:42:09.918 -07 000000438 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 19:42:10.058 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:42:10.058 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:42:10.058 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:10.058 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:42:10.058 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:42:10.088 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:42:10.088 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:42:10.168 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:42:10.168 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:42:10.168 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:10.178 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:10.178 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 524 ms.
17-03-17 19:42:10.268 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 19:42:10.268 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 19:42:10.308 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:10.308 -07 000000382 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:42:10.318 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:42:10.318 -07 000000626 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:10.318 -07 000000626 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:42:10.318 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.840 mm, average velocity = 2.153 mm/sec
17-03-17 19:42:11.268 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:11.268 -07 000000429 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:42:11.278 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:11.278 -07 000000626 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:11.298 -07 000000626 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:42:11.298 -07 000000626 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:42:11.298 -07 000000626 INF: Y Motor: Moved to 61.5640 after 1436 ms (table move)
17-03-17 19:42:11.298 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178856 mm (DAC = 39071)
17-03-17 19:42:11.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:11.298 -07 000000501 INF: FPGA: Recv ZSGSRD 37135
17-03-17 19:42:11.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:42:11.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:11.308 -07 000000551 INF: FPGA: Recv ZSGSRD 37126
17-03-17 19:42:11.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:11.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:11.318 -07 000000462 INF: FPGA: Recv ZSGSRD 37119
17-03-17 19:42:11.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:11.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:11.328 -07 000000626 INF: FPGA: Recv ZSGSRD 37130
17-03-17 19:42:11.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:11.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:11.338 -07 000000569 INF: FPGA: Recv ZSGSRD 37136
17-03-17 19:42:11.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:11.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:11.348 -07 000000462 INF: FPGA: Recv ZSGSRD 37125
17-03-17 19:42:11.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:11.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:11.358 -07 000000501 INF: FPGA: Recv ZSGSRD 37134
17-03-17 19:42:11.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:11.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:11.368 -07 000000424 INF: FPGA: Recv ZSGSRD 37137
17-03-17 19:42:11.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:11.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:11.378 -07 000000569 INF: FPGA: Recv ZSGSRD 37139
17-03-17 19:42:11.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:11.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:11.388 -07 000000382 INF: FPGA: Recv ZSGSRD 37123
17-03-17 19:42:11.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:11.398 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:11.398 -07 000000501 INF: FPGA: Recv ZPIEZORD 33549
17-03-17 19:42:11.408 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:11.408 -07 000000431 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.962 V. Piezo Error = -7.9 V.
17-03-17 19:42:11.408 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.9 um, Read 10 ADC samples: Avg = 37130 (-178.0 uncal um), Error = 0.9 uncal um, Median = 37132 (-178.0 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 37119 (-177.9 uncal um), Max = 37139 (-178.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 19:42:11.408 -07 000000431 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37130, posNoise = 9, negNoise = 11
17-03-17 19:42:11.408 -07 000000431 INF: Z Motor: After move to -0.178856, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:11.408 -07 000000431 INF: Z Motor: Settle wait time = 1440 ms, measure time = 105 ms (allowed 150 ms), total time = 1545 ms
17-03-17 19:42:11.408 -07 000000431 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:42:11.458 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 19:42:11.458 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:42:11.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:11.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:11.458 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:11.458 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:11.458 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:42:11.458 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:11.458 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:42:11.458 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:42:11.468 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:42:11.468 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:42:11.478 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:42:11.478 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:42:11.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:42:11.528 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:42:11.708 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:42:11.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:42:11.728 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:42:11.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:42:11.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:42:11.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1055395888, 0x0, 559484976) start.
17-03-17 19:42:11.758 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:42:11.768 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 19:42:11.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 19:42:11.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1055395888, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 19:42:11.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:11.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:42:11.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 19:42:11.868 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:11.868 -07 000000551 INF: Autofocus start
17-03-17 19:42:11.868 -07 000000551 INF: MeasureProfile start
17-03-17 19:42:11.868 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:11.878 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:42:11.878 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:42:11.888 -07 000000551 INF: MeasureProfile done
17-03-17 19:42:11.888 -07 000000551 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:42:11.888 -07 000000551 INF: Autofocus finished
17-03-17 19:42:12.078 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:42:12.078 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 19:42:12.088 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178854348834719. ----------
17-03-17 19:42:12.088 -07 000000610 INF: Cycle	29	Tile	3	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:42:12.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37568, sync = True, waitForSettling = True)
17-03-17 19:42:12.088 -07 000000610 INF: Z Motor: Moving to -0.171975 mm, started at -0.178854 mm, distance = 6.88 um
17-03-17 19:42:12.088 -07 000000610 INF: FPGA: Xmit ZDACW 37568\n [Z Motor]
17-03-17 19:42:12.088 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:42:12.098 -07 000000610 INF: FPGA: 'ZDACW 37568' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:42:12.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:12.098 -07 000000593 INF: FPGA: Recv ZDACR 37568
17-03-17 19:42:12.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:12.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:42:12.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:12.258 -07 000000438 INF: FPGA: Recv ZSGSRD 36063
17-03-17 19:42:12.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:12.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:12.268 -07 000000476 INF: FPGA: Recv ZSGSRD 36061
17-03-17 19:42:12.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:12.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:12.278 -07 000000541 INF: FPGA: Recv ZSGSRD 36058
17-03-17 19:42:12.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:12.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:12.288 -07 000000593 INF: FPGA: Recv ZSGSRD 36060
17-03-17 19:42:12.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:12.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:12.298 -07 000000438 INF: FPGA: Recv ZSGSRD 36063
17-03-17 19:42:12.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:12.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:12.308 -07 000000424 INF: FPGA: Recv ZSGSRD 36062
17-03-17 19:42:12.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:12.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:12.318 -07 000000561 INF: FPGA: Recv ZSGSRD 36058
17-03-17 19:42:12.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:12.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:12.328 -07 000000551 INF: FPGA: Recv ZSGSRD 36063
17-03-17 19:42:12.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:12.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:12.338 -07 000000431 INF: FPGA: Recv ZSGSRD 36057
17-03-17 19:42:12.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:12.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:12.348 -07 000000429 INF: FPGA: Recv ZSGSRD 36060
17-03-17 19:42:12.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:12.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:12.358 -07 000000561 INF: FPGA: Recv ZPIEZORD 32135
17-03-17 19:42:12.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:12.368 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -8.7 V.
17-03-17 19:42:12.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36060 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36060 (-171.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36057 (-171.1 uncal um), Max = 36063 (-171.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:42:12.368 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36060, posNoise = 3, negNoise = 3
17-03-17 19:42:12.368 -07 000000610 INF: Z Motor: After move to -0.171975, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:12.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:42:12.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:12.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:12.368 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:12.368 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:12.368 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:42:12.368 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:12.368 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:42:12.368 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:42:12.368 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:42:12.368 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:42:12.368 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:42:12.368 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:42:12.378 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:42:12.378 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:42:12.378 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:42:12.378 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:42:12.388 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:42:12.388 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:42:12.388 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:42:12.388 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:42:12.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 37745 150\n [Camera]
17-03-17 19:42:12.588 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:42:12.988 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:42:12.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:42:12.988 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:12.998 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:42:12.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:42:12.998 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:12.998 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:12.998 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:42:13.008 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:13.008 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) start.
17-03-17 19:42:13.018 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.009895,
17-03-17 19:42:13.178 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37745 789
17-03-17 19:42:13.328 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:42:13.378 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:42:13.378 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:42:13.378 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:13.378 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:13.378 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 19:42:13.378 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 19:42:13.378 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:13.378 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:13.378 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:42:13.388 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:42:13.528 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:42:13.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:42:13.528 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:13.528 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:13.528 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:42:13.528 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:42:13.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:42:13.528 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:13.648 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:13.648 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:42:13.718 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:42:13.718 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:42:13.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 37745 150' command took 2 ms to send, 1325 ms to get response, and 1332 ms overall
17-03-17 19:42:13.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:42:13.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.171980441843035. ------
17-03-17 19:42:13.728 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:13.728 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17814 mm
17-03-17 19:42:13.728 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:42:13.728 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:13.728 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38914, sync = True, waitForSettling = False)
17-03-17 19:42:13.728 -07 000000618 INF: Z Motor: Moving to -0.178137 mm, started at -0.171980 mm, distance = -6.16 um
17-03-17 19:42:13.728 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:42:13.728 -07 000000476 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 19:42:13.738 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:42:13.738 -07 000000618 INF: FPGA: Xmit ZDACW 38914\n [Z Motor]
17-03-17 19:42:13.738 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:42:13.748 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:13.748 -07 000000618 INF: FPGA: 'ZDACW 38914' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:42:13.748 -07 000000626 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:42:13.758 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:42:13.758 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:42:13.758 -07 000000476 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:13.758 -07 000000476 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:42:13.758 -07 000000476 INF: Y Motor: Moving 1342 steps-18
17-03-17 19:42:13.768 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:13.768 -07 000000541 INF: FPGA: Recv ZDACR 38914
17-03-17 19:42:13.778 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:42:13.778 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:42:13.778 -07 000000618 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 19:42:13.918 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:42:13.918 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:42:13.918 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:13.918 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:42:13.918 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:42:13.958 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:42:13.958 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:42:14.028 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:42:14.028 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:42:14.028 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:14.028 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:42:14.038 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-17 19:42:14.148 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 19:42:14.148 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 369 ms to get response, and 399 ms overall
17-03-17 19:42:14.188 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:14.188 -07 000000424 INF: FPGA: Recv YRDPOS 127785
17-03-17 19:42:14.198 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:42:14.198 -07 000000476 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:14.198 -07 000000476 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:42:14.198 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.839 mm, average velocity = 2.102 mm/sec
17-03-17 19:42:15.148 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:15.148 -07 000000431 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:42:15.158 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:15.158 -07 000000476 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:15.168 -07 000000476 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:42:15.168 -07 000000476 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:42:15.168 -07 000000476 INF: Y Motor: Moved to 62.3955 after 1443 ms (table move)
17-03-17 19:42:15.178 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178137 mm (DAC = 38914)
17-03-17 19:42:15.178 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:15.178 -07 000000551 INF: FPGA: Recv ZSGSRD 37018
17-03-17 19:42:15.188 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:42:15.188 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:15.188 -07 000000541 INF: FPGA: Recv ZSGSRD 37019
17-03-17 19:42:15.198 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:15.198 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:15.198 -07 000000569 INF: FPGA: Recv ZSGSRD 37024
17-03-17 19:42:15.208 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:15.208 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:15.208 -07 000000561 INF: FPGA: Recv ZSGSRD 37018
17-03-17 19:42:15.218 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:15.218 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:15.218 -07 000000551 INF: FPGA: Recv ZSGSRD 37016
17-03-17 19:42:15.228 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:15.228 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:15.228 -07 000000431 INF: FPGA: Recv ZSGSRD 37019
17-03-17 19:42:15.238 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:15.238 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:15.238 -07 000000569 INF: FPGA: Recv ZSGSRD 37020
17-03-17 19:42:15.248 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:15.248 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:15.248 -07 000000424 INF: FPGA: Recv ZSGSRD 37017
17-03-17 19:42:15.258 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:15.258 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:15.258 -07 000000618 INF: FPGA: Recv ZSGSRD 37020
17-03-17 19:42:15.268 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:15.268 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:15.268 -07 000000431 INF: FPGA: Recv ZSGSRD 37021
17-03-17 19:42:15.278 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:15.278 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:15.278 -07 000000593 INF: FPGA: Recv ZPIEZORD 33363
17-03-17 19:42:15.288 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:15.288 -07 000000382 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.938 V. Piezo Error = -8.1 V.
17-03-17 19:42:15.288 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37019 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37019 (-177.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37016 (-177.2 uncal um), Max = 37024 (-177.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:42:15.288 -07 000000382 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37019, posNoise = 5, negNoise = 3
17-03-17 19:42:15.288 -07 000000382 INF: Z Motor: After move to -0.178137, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:15.288 -07 000000382 INF: Z Motor: Settle wait time = 1448 ms, measure time = 107 ms (allowed 150 ms), total time = 1555 ms
17-03-17 19:42:15.288 -07 000000382 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:42:15.338 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 19:42:15.338 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:42:15.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:15.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:15.338 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:15.338 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:15.338 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:42:15.348 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:15.348 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:15.348 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:42:15.348 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:42:15.348 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:42:15.358 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:42:15.358 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:42:15.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:42:15.408 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:42:15.608 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:42:15.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:42:15.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:42:15.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 19:42:15.648 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:42:15.648 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:42:15.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 19:42:15.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:42:15.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:15.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:42:15.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:42:15.748 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:15.748 -07 000000618 INF: Autofocus start
17-03-17 19:42:15.748 -07 000000618 INF: MeasureProfile start
17-03-17 19:42:15.748 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:15.758 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:42:15.758 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:42:15.758 -07 000000618 INF: MeasureProfile done
17-03-17 19:42:15.758 -07 000000618 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 19:42:15.758 -07 000000618 INF: Autofocus finished
17-03-17 19:42:15.958 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:42:15.958 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:42:15.958 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.178141261286984. ----------
17-03-17 19:42:15.958 -07 000000610 INF: Cycle	29	Tile	4	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:42:15.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37394, sync = True, waitForSettling = True)
17-03-17 19:42:15.968 -07 000000610 INF: Z Motor: Moving to -0.171179 mm, started at -0.178141 mm, distance = 6.96 um
17-03-17 19:42:15.968 -07 000000610 INF: FPGA: Xmit ZDACW 37394\n [Z Motor]
17-03-17 19:42:15.968 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:42:15.978 -07 000000610 INF: FPGA: 'ZDACW 37394' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:42:15.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:15.978 -07 000000438 INF: FPGA: Recv ZDACR 37394
17-03-17 19:42:15.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:15.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:42:16.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:16.138 -07 000000569 INF: FPGA: Recv ZSGSRD 35935
17-03-17 19:42:16.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:16.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:16.148 -07 000000551 INF: FPGA: Recv ZSGSRD 35930
17-03-17 19:42:16.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:16.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:16.158 -07 000000431 INF: FPGA: Recv ZSGSRD 35936
17-03-17 19:42:16.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:16.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:16.168 -07 000000626 INF: FPGA: Recv ZSGSRD 35928
17-03-17 19:42:16.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:16.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:16.178 -07 000000569 INF: FPGA: Recv ZSGSRD 35938
17-03-17 19:42:16.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:16.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:16.188 -07 000000501 INF: FPGA: Recv ZSGSRD 35939
17-03-17 19:42:16.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:16.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:16.198 -07 000000593 INF: FPGA: Recv ZSGSRD 35934
17-03-17 19:42:16.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:16.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:16.208 -07 000000462 INF: FPGA: Recv ZSGSRD 35935
17-03-17 19:42:16.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:16.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:16.218 -07 000000626 INF: FPGA: Recv ZSGSRD 35938
17-03-17 19:42:16.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:16.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:16.228 -07 000000551 INF: FPGA: Recv ZSGSRD 35938
17-03-17 19:42:16.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:16.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:16.238 -07 000000438 INF: FPGA: Recv ZPIEZORD 31940
17-03-17 19:42:16.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:16.248 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.706 V. Piezo Error = -8.8 V.
17-03-17 19:42:16.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35935 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35936 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35928 (-170.3 uncal um), Max = 35939 (-170.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:42:16.248 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35935, posNoise = 4, negNoise = 7
17-03-17 19:42:16.248 -07 000000610 INF: Z Motor: After move to -0.171179, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:16.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:42:16.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:16.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:16.248 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:16.248 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:16.248 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:42:16.248 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:42:16.248 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:42:16.248 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:16.248 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:42:16.248 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:42:16.248 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:16.248 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:42:16.258 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:42:16.258 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:42:16.258 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:42:16.258 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:42:16.268 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:42:16.268 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:42:16.268 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:42:16.268 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:42:16.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 37571 150\n [Camera]
17-03-17 19:42:16.468 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:42:16.708 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:42:16.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:42:16.868 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:42:16.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:42:16.868 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:16.878 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:42:16.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:42:16.878 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:16.878 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:16.878 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:42:16.878 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:16.878 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:42:17.068 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37571 789
17-03-17 19:42:17.208 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:42:17.258 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:42:17.258 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:42:17.258 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:17.258 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:42:17.258 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:42:17.258 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:17.258 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:42:17.258 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:42:17.258 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:42:17.268 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:42:17.408 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:42:17.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:42:17.408 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:17.408 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:42:17.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:42:17.408 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:17.408 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:17.408 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:42:17.418 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:17.418 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:42:17.598 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:42:17.598 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:42:17.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 37571 150' command took 2 ms to send, 1326 ms to get response, and 1332 ms overall
17-03-17 19:42:17.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:42:17.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.171177415325315. ------
17-03-17 19:42:17.608 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17751 mm
17-03-17 19:42:17.608 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:17.608 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:42:17.608 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:17.608 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:42:17.608 -07 000000476 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 19:42:17.608 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38778, sync = True, waitForSettling = False)
17-03-17 19:42:17.608 -07 000000593 INF: Z Motor: Moving to -0.177514 mm, started at -0.171177 mm, distance = -6.34 um
17-03-17 19:42:17.618 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:42:17.618 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:17.618 -07 000000429 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:42:17.628 -07 000000593 INF: FPGA: Xmit ZDACW 38778\n [Z Motor]
17-03-17 19:42:17.628 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:42:17.628 -07 000000476 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:17.628 -07 000000476 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:42:17.628 -07 000000476 INF: Y Motor: Moving 1339 steps-16
17-03-17 19:42:17.628 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:42:17.638 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:42:17.638 -07 000000593 INF: FPGA: 'ZDACW 38778' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:42:17.648 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:42:17.658 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:17.658 -07 000000618 INF: FPGA: Recv ZDACR 38778
17-03-17 19:42:17.668 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:42:17.668 -07 000000593 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 19:42:17.798 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:42:17.798 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:42:17.798 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:17.808 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:17.808 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:42:17.808 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:42:17.808 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:17.808 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:42:17.818 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:42:17.818 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:42:17.838 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:42:17.838 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:42:18.028 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 19:42:18.028 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 19:42:18.058 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:18.058 -07 000000431 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:42:18.068 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:42:18.068 -07 000000476 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:18.068 -07 000000476 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:42:18.068 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.837 mm, average velocity = 2.093 mm/sec
17-03-17 19:42:18.388 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.011254,
17-03-17 19:42:19.018 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:19.018 -07 000000593 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:42:19.028 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:19.028 -07 000000476 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:19.048 -07 000000476 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:42:19.048 -07 000000476 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:42:19.048 -07 000000476 INF: Y Motor: Moved to 63.2241 after 1435 ms (table move)
17-03-17 19:42:19.048 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177514 mm (DAC = 38778)
17-03-17 19:42:19.048 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:19.048 -07 000000462 INF: FPGA: Recv ZSGSRD 36935
17-03-17 19:42:19.058 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:42:19.058 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:19.058 -07 000000618 INF: FPGA: Recv ZSGSRD 36932
17-03-17 19:42:19.068 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:19.068 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:19.068 -07 000000541 INF: FPGA: Recv ZSGSRD 36924
17-03-17 19:42:19.078 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:19.078 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:19.078 -07 000000476 INF: FPGA: Recv ZSGSRD 36917
17-03-17 19:42:19.088 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:19.088 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:19.088 -07 000000561 INF: FPGA: Recv ZSGSRD 36918
17-03-17 19:42:19.098 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:19.098 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:19.098 -07 000000618 INF: FPGA: Recv ZSGSRD 36925
17-03-17 19:42:19.108 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:19.108 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:19.108 -07 000000569 INF: FPGA: Recv ZSGSRD 36925
17-03-17 19:42:19.118 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:19.118 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:19.118 -07 000000382 INF: FPGA: Recv ZSGSRD 36924
17-03-17 19:42:19.128 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:19.128 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:19.128 -07 000000561 INF: FPGA: Recv ZSGSRD 36930
17-03-17 19:42:19.138 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:19.138 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:19.138 -07 000000424 INF: FPGA: Recv ZSGSRD 36926
17-03-17 19:42:19.148 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:19.148 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:19.148 -07 000000462 INF: FPGA: Recv ZPIEZORD 33247
17-03-17 19:42:19.158 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:19.158 -07 000000626 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.917 V. Piezo Error = -8.1 V.
17-03-17 19:42:19.158 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36926 (-176.7 uncal um), Error = 0.9 uncal um, Median = 36925 (-176.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36917 (-176.6 uncal um), Max = 36935 (-176.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:42:19.158 -07 000000626 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36926, posNoise = 9, negNoise = 9
17-03-17 19:42:19.158 -07 000000626 INF: Z Motor: After move to -0.177514, error = -0.000030, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:19.158 -07 000000626 INF: Z Motor: Settle wait time = 1438 ms, measure time = 104 ms (allowed 150 ms), total time = 1542 ms
17-03-17 19:42:19.158 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:42:19.208 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 19:42:19.208 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:42:19.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:19.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:19.208 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:19.208 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:19.208 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:42:19.208 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:19.208 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:42:19.208 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:42:19.208 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:42:19.208 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:42:19.218 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:42:19.218 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:42:19.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:42:19.268 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:42:19.468 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:42:19.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:42:19.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:42:19.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 658880552, 0x0, 559484976) start.
17-03-17 19:42:19.508 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:42:19.508 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 19:42:19.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 19:42:19.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 658880552, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:42:19.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:19.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:42:19.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 19:42:19.608 -07 000000501 INF: Autofocus start
17-03-17 19:42:19.608 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:19.608 -07 000000501 INF: MeasureProfile start
17-03-17 19:42:19.608 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:19.618 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:42:19.618 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:42:19.618 -07 000000501 INF: MeasureProfile done
17-03-17 19:42:19.618 -07 000000501 INF: X=48  Z correction [um]=0.1739867
17-03-17 19:42:19.618 -07 000000501 INF: Autofocus finished
17-03-17 19:42:19.818 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:42:19.818 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:42:19.818 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.1775438095578. ----------
17-03-17 19:42:19.818 -07 000000610 INF: Cycle	29	Tile	5	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:42:19.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37328, sync = True, waitForSettling = True)
17-03-17 19:42:19.828 -07 000000610 INF: Z Motor: Moving to -0.170877 mm, started at -0.177544 mm, distance = 6.67 um
17-03-17 19:42:19.828 -07 000000610 INF: FPGA: Xmit ZDACW 37328\n [Z Motor]
17-03-17 19:42:19.828 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:42:19.838 -07 000000610 INF: FPGA: 'ZDACW 37328' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:19.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:19.838 -07 000000618 INF: FPGA: Recv ZDACR 37328
17-03-17 19:42:19.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:19.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:42:19.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:19.998 -07 000000438 INF: FPGA: Recv ZSGSRD 35888
17-03-17 19:42:20.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:20.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:20.008 -07 000000551 INF: FPGA: Recv ZSGSRD 35892
17-03-17 19:42:20.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:20.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:20.018 -07 000000429 INF: FPGA: Recv ZSGSRD 35892
17-03-17 19:42:20.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:20.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:20.028 -07 000000424 INF: FPGA: Recv ZSGSRD 35888
17-03-17 19:42:20.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:20.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:20.038 -07 000000501 INF: FPGA: Recv ZSGSRD 35888
17-03-17 19:42:20.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:20.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:20.048 -07 000000551 INF: FPGA: Recv ZSGSRD 35886
17-03-17 19:42:20.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:20.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:20.058 -07 000000429 INF: FPGA: Recv ZSGSRD 35886
17-03-17 19:42:20.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:20.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:20.068 -07 000000541 INF: FPGA: Recv ZSGSRD 35894
17-03-17 19:42:20.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:20.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:20.078 -07 000000382 INF: FPGA: Recv ZSGSRD 35887
17-03-17 19:42:20.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:20.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:20.088 -07 000000551 INF: FPGA: Recv ZSGSRD 35890
17-03-17 19:42:20.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:20.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:20.098 -07 000000429 INF: FPGA: Recv ZPIEZORD 31904
17-03-17 19:42:20.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:20.108 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.696 V. Piezo Error = -8.8 V.
17-03-17 19:42:20.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35889 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35888 (-170.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35886 (-170.0 uncal um), Max = 35894 (-170.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:42:20.108 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35889, posNoise = 5, negNoise = 3
17-03-17 19:42:20.108 -07 000000610 INF: Z Motor: After move to -0.170877, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:20.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:42:20.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:20.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:20.108 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:20.108 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:20.108 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:42:20.108 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:42:20.108 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:42:20.108 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:20.108 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:42:20.108 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:42:20.108 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:20.108 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:42:20.108 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:42:20.108 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:42:20.118 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:42:20.118 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:42:20.128 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 19:42:20.128 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:42:20.128 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:42:20.128 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:42:20.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 37505 150\n [Camera]
17-03-17 19:42:20.328 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:42:20.728 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:42:20.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:42:20.728 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:20.728 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:20.728 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:42:20.738 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:42:20.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:42:20.738 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:20.858 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:20.858 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:42:20.928 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37505 789
17-03-17 19:42:21.078 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:42:21.118 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:42:21.118 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:42:21.118 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:21.128 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:21.128 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:42:21.248 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:42:21.248 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:42:21.248 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:21.258 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:21.258 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 524 ms.
17-03-17 19:42:21.268 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:42:21.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:42:21.268 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:21.268 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:42:21.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:42:21.268 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:21.278 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:21.278 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:42:21.278 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:21.278 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:42:21.458 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:42:21.458 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:42:21.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 37505 150' command took 2 ms to send, 1327 ms to get response, and 1333 ms overall
17-03-17 19:42:21.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:42:21.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170881901566794. ------
17-03-17 19:42:21.468 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17732 mm
17-03-17 19:42:21.468 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:42:21.468 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:21.468 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:21.468 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:42:21.468 -07 000000382 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 19:42:21.468 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38735, sync = True, waitForSettling = False)
17-03-17 19:42:21.468 -07 000000438 INF: Z Motor: Moving to -0.177317 mm, started at -0.170882 mm, distance = -6.44 um
17-03-17 19:42:21.478 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:42:21.478 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:21.478 -07 000000476 INF: FPGA: Recv YRDPOS 129484
17-03-17 19:42:21.488 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:42:21.488 -07 000000382 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:21.488 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:42:21.488 -07 000000382 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:42:21.488 -07 000000382 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:42:21.498 -07 000000438 INF: FPGA: Xmit ZDACW 38735\n [Z Motor]
17-03-17 19:42:21.498 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:42:21.508 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:42:21.508 -07 000000438 INF: FPGA: 'ZDACW 38735' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:42:21.518 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:21.518 -07 000000501 INF: FPGA: Recv ZDACR 38735
17-03-17 19:42:21.528 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:42:21.528 -07 000000438 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 19:42:21.678 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 19:42:21.678 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:42:21.678 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:21.678 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:42:21.678 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:42:21.678 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:21.678 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:21.678 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:21.678 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 19:42:21.688 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:42:21.688 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 19:42:21.688 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 19:42:21.708 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:42:21.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:42:21.878 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 19:42:21.878 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:42:21.918 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:21.918 -07 000000501 INF: FPGA: Recv YRDPOS 131188
17-03-17 19:42:21.928 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:42:21.928 -07 000000382 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:21.928 -07 000000382 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 19:42:21.928 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.123 mm/sec
17-03-17 19:42:22.878 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:22.878 -07 000000593 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:42:22.888 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:22.888 -07 000000382 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:22.898 -07 000000382 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:42:22.898 -07 000000382 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:42:22.908 -07 000000382 INF: Y Motor: Moved to 64.0571 after 1431 ms (table move)
17-03-17 19:42:22.908 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177317 mm (DAC = 38735)
17-03-17 19:42:22.908 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:22.908 -07 000000438 INF: FPGA: Recv ZSGSRD 36901
17-03-17 19:42:22.918 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:42:22.918 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:22.918 -07 000000618 INF: FPGA: Recv ZSGSRD 36884
17-03-17 19:42:22.928 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:22.928 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:22.928 -07 000000626 INF: FPGA: Recv ZSGSRD 36888
17-03-17 19:42:22.938 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:22.938 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:22.938 -07 000000431 INF: FPGA: Recv ZSGSRD 36892
17-03-17 19:42:22.948 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:22.948 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:22.948 -07 000000569 INF: FPGA: Recv ZSGSRD 36892
17-03-17 19:42:22.958 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:22.958 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:22.958 -07 000000618 INF: FPGA: Recv ZSGSRD 36888
17-03-17 19:42:22.968 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:22.968 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:22.968 -07 000000429 INF: FPGA: Recv ZSGSRD 36898
17-03-17 19:42:22.978 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:22.978 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:22.978 -07 000000382 INF: FPGA: Recv ZSGSRD 36895
17-03-17 19:42:22.988 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:22.988 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:22.988 -07 000000569 INF: FPGA: Recv ZSGSRD 36889
17-03-17 19:42:22.998 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:22.998 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:22.998 -07 000000551 INF: FPGA: Recv ZSGSRD 36891
17-03-17 19:42:23.008 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:23.008 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:23.008 -07 000000593 INF: FPGA: Recv ZPIEZORD 33235
17-03-17 19:42:23.018 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:23.018 -07 000000541 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.911 V. Piezo Error = -8.1 V.
17-03-17 19:42:23.018 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36892 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36892 (-176.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36884 (-176.4 uncal um), Max = 36901 (-176.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:42:23.018 -07 000000541 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36892, posNoise = 9, negNoise = 8
17-03-17 19:42:23.018 -07 000000541 INF: Z Motor: After move to -0.177317, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:23.018 -07 000000541 INF: Z Motor: Settle wait time = 1433 ms, measure time = 108 ms (allowed 150 ms), total time = 1541 ms
17-03-17 19:42:23.018 -07 000000541 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:42:23.068 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 19:42:23.068 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:42:23.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:23.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:23.068 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:23.068 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:23.068 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:42:23.068 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:23.068 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:23.068 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:42:23.078 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:42:23.078 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:42:23.088 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:42:23.088 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:42:23.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:42:23.138 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:42:23.338 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:42:23.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:42:23.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:42:23.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 19:42:23.378 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:42:23.378 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 19:42:23.378 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 19:42:23.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 19:42:23.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:23.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:42:23.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 19:42:23.478 -07 000000424 INF: Autofocus start
17-03-17 19:42:23.478 -07 000000424 INF: MeasureProfile start
17-03-17 19:42:23.478 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:23.478 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:23.488 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:42:23.488 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:42:23.488 -07 000000424 INF: MeasureProfile done
17-03-17 19:42:23.488 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:42:23.488 -07 000000424 INF: Autofocus finished
17-03-17 19:42:23.688 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:42:23.688 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:42:23.688 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.17732538634498. ----------
17-03-17 19:42:23.688 -07 000000610 INF: Cycle	29	Tile	6	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:42:23.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37232, sync = True, waitForSettling = True)
17-03-17 19:42:23.698 -07 000000610 INF: Z Motor: Moving to -0.170437 mm, started at -0.177325 mm, distance = 6.89 um
17-03-17 19:42:23.698 -07 000000610 INF: FPGA: Xmit ZDACW 37232\n [Z Motor]
17-03-17 19:42:23.698 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:42:23.708 -07 000000610 INF: FPGA: 'ZDACW 37232' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:42:23.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:23.708 -07 000000431 INF: FPGA: Recv ZDACR 37232
17-03-17 19:42:23.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:23.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:42:23.768 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.000345,
17-03-17 19:42:23.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:23.868 -07 000000569 INF: FPGA: Recv ZSGSRD 35825
17-03-17 19:42:23.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:23.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:23.878 -07 000000551 INF: FPGA: Recv ZSGSRD 35826
17-03-17 19:42:23.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:23.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:23.888 -07 000000541 INF: FPGA: Recv ZSGSRD 35815
17-03-17 19:42:23.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:23.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:23.898 -07 000000382 INF: FPGA: Recv ZSGSRD 35817
17-03-17 19:42:23.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:23.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:23.908 -07 000000431 INF: FPGA: Recv ZSGSRD 35825
17-03-17 19:42:23.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:23.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:23.918 -07 000000551 INF: FPGA: Recv ZSGSRD 35822
17-03-17 19:42:23.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:23.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:23.928 -07 000000429 INF: FPGA: Recv ZSGSRD 35818
17-03-17 19:42:23.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:23.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:23.938 -07 000000593 INF: FPGA: Recv ZSGSRD 35821
17-03-17 19:42:23.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:23.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:23.948 -07 000000541 INF: FPGA: Recv ZSGSRD 35821
17-03-17 19:42:23.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:23.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:23.958 -07 000000551 INF: FPGA: Recv ZSGSRD 35826
17-03-17 19:42:23.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:23.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:23.968 -07 000000501 INF: FPGA: Recv ZPIEZORD 31819
17-03-17 19:42:23.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:23.978 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.681 V. Piezo Error = -8.8 V.
17-03-17 19:42:23.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35822 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35822 (-169.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35815 (-169.5 uncal um), Max = 35826 (-169.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:42:23.978 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35822, posNoise = 4, negNoise = 7
17-03-17 19:42:23.978 -07 000000610 INF: Z Motor: After move to -0.170437, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:23.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:42:23.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:23.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:23.978 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:23.978 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:23.978 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:42:23.978 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:23.978 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:42:23.978 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:42:23.978 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:23.978 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:42:23.978 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:42:23.978 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:42:23.978 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:42:23.978 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:42:23.978 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:42:23.978 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:42:23.988 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:42:23.988 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:42:23.988 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:42:23.988 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:42:23.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 37409 150\n [Camera]
17-03-17 19:42:24.198 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:42:24.598 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:42:24.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:42:24.598 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:24.598 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:24.598 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:42:24.608 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:42:24.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:42:24.608 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:24.718 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:24.718 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:42:24.788 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37409 789
17-03-17 19:42:24.938 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:42:24.978 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:42:24.978 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:42:24.978 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:24.988 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:24.988 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:42:25.088 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 19:42:25.088 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 19:42:25.088 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:25.098 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:25.098 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 496 ms.
17-03-17 19:42:25.138 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:42:25.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:42:25.138 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:25.138 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:42:25.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:42:25.138 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:25.148 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:25.148 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:42:25.148 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:25.148 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:42:25.328 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:42:25.328 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:42:25.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 37409 150' command took 2 ms to send, 1326 ms to get response, and 1332 ms overall
17-03-17 19:42:25.328 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:42:25.328 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.170451479353296. ------
17-03-17 19:42:25.338 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:25.338 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17687 mm
17-03-17 19:42:25.338 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:42:25.338 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:25.338 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:42:25.338 -07 000000618 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 19:42:25.338 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38637, sync = True, waitForSettling = False)
17-03-17 19:42:25.338 -07 000000382 INF: Z Motor: Moving to -0.176869 mm, started at -0.170451 mm, distance = -6.42 um
17-03-17 19:42:25.348 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:25.348 -07 000000382 INF: FPGA: Xmit ZDACW 38637\n [Z Motor]
17-03-17 19:42:25.348 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:42:25.358 -07 000000382 INF: FPGA: 'ZDACW 38637' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:42:25.358 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:25.358 -07 000000476 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:42:25.368 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:42:25.368 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:42:25.368 -07 000000618 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:25.368 -07 000000618 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:42:25.368 -07 000000618 INF: Y Motor: Moving 1337 steps-12
17-03-17 19:42:25.378 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:25.378 -07 000000431 INF: FPGA: Recv ZDACR 38637
17-03-17 19:42:25.388 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:42:25.388 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:42:25.388 -07 000000382 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 19:42:25.528 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:42:25.528 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:42:25.528 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:25.538 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 19:42:25.538 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:42:25.538 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:25.538 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:25.538 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:42:25.538 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:25.548 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:42:25.568 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:42:25.568 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:42:25.758 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 19:42:25.768 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 400 ms overall
17-03-17 19:42:25.798 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:25.798 -07 000000438 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:42:25.808 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:42:25.808 -07 000000618 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:25.808 -07 000000618 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:42:25.808 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.835 mm, average velocity = 2.089 mm/sec
17-03-17 19:42:26.708 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:42:26.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:42:26.758 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:26.758 -07 000000431 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:42:26.768 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:26.768 -07 000000618 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:26.788 -07 000000618 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:42:26.788 -07 000000618 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:42:26.788 -07 000000618 INF: Y Motor: Moved to 64.8789 after 1447 ms (table move)
17-03-17 19:42:26.788 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176869 mm (DAC = 38637)
17-03-17 19:42:26.788 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:26.788 -07 000000626 INF: FPGA: Recv ZSGSRD 36824
17-03-17 19:42:26.798 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:42:26.798 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:26.798 -07 000000462 INF: FPGA: Recv ZSGSRD 36807
17-03-17 19:42:26.808 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:26.808 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:26.808 -07 000000501 INF: FPGA: Recv ZSGSRD 36816
17-03-17 19:42:26.818 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:26.818 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:26.818 -07 000000626 INF: FPGA: Recv ZSGSRD 36826
17-03-17 19:42:26.828 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:26.828 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:26.828 -07 000000431 INF: FPGA: Recv ZSGSRD 36829
17-03-17 19:42:26.838 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:26.838 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:26.838 -07 000000382 INF: FPGA: Recv ZSGSRD 36824
17-03-17 19:42:26.848 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:26.848 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:26.848 -07 000000626 INF: FPGA: Recv ZSGSRD 36826
17-03-17 19:42:26.858 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:26.858 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:26.858 -07 000000438 INF: FPGA: Recv ZSGSRD 36828
17-03-17 19:42:26.868 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:26.868 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:26.868 -07 000000431 INF: FPGA: Recv ZSGSRD 36819
17-03-17 19:42:26.878 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:26.878 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:26.878 -07 000000382 INF: FPGA: Recv ZSGSRD 36818
17-03-17 19:42:26.888 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:26.888 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:26.888 -07 000000438 INF: FPGA: Recv ZPIEZORD 33136
17-03-17 19:42:26.898 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:26.898 -07 000000541 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.896 V. Piezo Error = -8.2 V.
17-03-17 19:42:26.898 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36822 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36824 (-176.0 uncal um), StdDev = 7 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 36807 (-175.9 uncal um), Max = 36829 (-176.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 15 (0.1 uncal um)
17-03-17 19:42:26.898 -07 000000541 INF: Z Motor: ADC noise = 15, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36822, posNoise = 7, negNoise = 15
17-03-17 19:42:26.898 -07 000000541 INF: Z Motor: After move to -0.176869, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:26.898 -07 000000541 INF: Z Motor: Settle wait time = 1450 ms, measure time = 105 ms (allowed 150 ms), total time = 1555 ms
17-03-17 19:42:26.898 -07 000000541 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:42:26.948 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 19:42:26.948 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:42:26.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:26.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:26.948 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:26.948 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:26.948 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:42:26.948 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:26.948 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:26.948 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:42:26.958 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:42:26.958 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:42:26.968 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:42:26.968 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:42:26.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:42:27.018 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:42:27.218 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:42:27.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:42:27.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:42:27.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 19:42:27.258 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:42:27.258 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 19:42:27.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 19:42:27.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:42:27.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:27.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:42:27.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:42:27.358 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:27.358 -07 000000382 INF: Autofocus start
17-03-17 19:42:27.358 -07 000000382 INF: MeasureProfile start
17-03-17 19:42:27.358 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:27.368 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:42:27.368 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:42:27.368 -07 000000382 INF: MeasureProfile done
17-03-17 19:42:27.368 -07 000000382 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:42:27.368 -07 000000382 INF: Autofocus finished
17-03-17 19:42:27.568 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:42:27.568 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:42:27.568 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.176875691495057. ----------
17-03-17 19:42:27.568 -07 000000610 INF: Cycle	29	Tile	7	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:42:27.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37170, sync = True, waitForSettling = True)
17-03-17 19:42:27.578 -07 000000610 INF: Z Motor: Moving to -0.170153 mm, started at -0.176876 mm, distance = 6.72 um
17-03-17 19:42:27.578 -07 000000610 INF: FPGA: Xmit ZDACW 37170\n [Z Motor]
17-03-17 19:42:27.578 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:42:27.588 -07 000000610 INF: FPGA: 'ZDACW 37170' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:27.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:27.588 -07 000000626 INF: FPGA: Recv ZDACR 37170
17-03-17 19:42:27.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:27.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:42:27.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:27.748 -07 000000541 INF: FPGA: Recv ZSGSRD 35777
17-03-17 19:42:27.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:27.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:27.758 -07 000000431 INF: FPGA: Recv ZSGSRD 35776
17-03-17 19:42:27.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:27.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:27.768 -07 000000561 INF: FPGA: Recv ZSGSRD 35781
17-03-17 19:42:27.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:27.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:27.778 -07 000000569 INF: FPGA: Recv ZSGSRD 35776
17-03-17 19:42:27.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:27.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:27.788 -07 000000541 INF: FPGA: Recv ZSGSRD 35779
17-03-17 19:42:27.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:27.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:27.798 -07 000000431 INF: FPGA: Recv ZSGSRD 35777
17-03-17 19:42:27.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:27.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:27.808 -07 000000593 INF: FPGA: Recv ZSGSRD 35778
17-03-17 19:42:27.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:27.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:27.818 -07 000000462 INF: FPGA: Recv ZSGSRD 35783
17-03-17 19:42:27.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:27.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:27.828 -07 000000626 INF: FPGA: Recv ZSGSRD 35776
17-03-17 19:42:27.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:27.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:27.838 -07 000000431 INF: FPGA: Recv ZSGSRD 35778
17-03-17 19:42:27.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:27.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:27.848 -07 000000551 INF: FPGA: Recv ZPIEZORD 31770
17-03-17 19:42:27.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:27.858 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.672 V. Piezo Error = -8.8 V.
17-03-17 19:42:27.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35778 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35778 (-169.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35776 (-169.3 uncal um), Max = 35783 (-169.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 19:42:27.858 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35778, posNoise = 5, negNoise = 2
17-03-17 19:42:27.858 -07 000000610 INF: Z Motor: After move to -0.170153, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:27.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:42:27.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:27.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:27.858 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:27.858 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:27.858 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:42:27.858 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:42:27.858 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:27.858 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:42:27.858 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:27.858 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:42:27.858 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:42:27.858 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:42:27.868 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:42:27.868 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:42:27.868 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:42:27.868 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:42:27.868 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:42:27.868 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:42:27.878 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:42:27.878 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:42:27.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 37346 150\n [Camera]
17-03-17 19:42:28.078 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:42:28.488 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 19:42:28.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 19:42:28.488 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:28.488 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:28.488 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:42:28.488 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 19:42:28.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 19:42:28.488 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:28.488 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:28.488 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:42:28.678 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37346 789
17-03-17 19:42:28.818 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:42:28.858 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:42:28.858 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:42:28.858 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:28.868 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:42:28.868 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:42:28.868 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:28.868 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:42:28.868 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:42:28.868 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:28.878 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:42:29.018 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:42:29.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:42:29.018 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:29.138 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:42:29.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:42:29.138 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:29.138 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:29.138 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:42:29.138 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:29.138 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:42:29.148 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.993549,
17-03-17 19:42:29.208 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:42:29.208 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:42:29.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 37346 150' command took 4 ms to send, 1326 ms to get response, and 1334 ms overall
17-03-17 19:42:29.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:42:29.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.170168814019058. ------
17-03-17 19:42:29.218 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:29.218 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17666 mm
17-03-17 19:42:29.218 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:42:29.218 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:29.218 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38591, sync = True, waitForSettling = False)
17-03-17 19:42:29.218 -07 000000561 INF: Z Motor: Moving to -0.176658 mm, started at -0.170169 mm, distance = -6.49 um
17-03-17 19:42:29.218 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:42:29.218 -07 000000541 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 19:42:29.228 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:29.228 -07 000000561 INF: FPGA: Xmit ZDACW 38591\n [Z Motor]
17-03-17 19:42:29.228 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:42:29.238 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:29.238 -07 000000561 INF: FPGA: 'ZDACW 38591' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:42:29.238 -07 000000382 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:42:29.248 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:42:29.248 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:42:29.248 -07 000000541 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:29.248 -07 000000541 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:42:29.248 -07 000000541 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:42:29.258 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:29.258 -07 000000429 INF: FPGA: Recv ZDACR 38591
17-03-17 19:42:29.268 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:42:29.268 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:42:29.268 -07 000000561 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 19:42:29.448 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:42:29.448 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 19:42:29.528 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:42:29.528 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:42:29.528 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:29.538 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:42:29.538 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:42:29.538 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:29.538 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:29.538 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:29.538 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 19:42:29.538 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:42:29.638 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:42:29.638 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 19:42:29.678 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:29.678 -07 000000569 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:42:29.688 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:42:29.688 -07 000000541 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:29.688 -07 000000541 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:42:29.688 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-17 19:42:30.638 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:30.638 -07 000000551 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:42:30.648 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:30.648 -07 000000541 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:30.668 -07 000000541 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:42:30.668 -07 000000541 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:42:30.668 -07 000000541 INF: Y Motor: Moved to 65.7144 after 1449 ms (table move)
17-03-17 19:42:30.668 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176658 mm (DAC = 38591)
17-03-17 19:42:30.668 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:30.678 -07 000000551 INF: FPGA: Recv ZSGSRD 36790
17-03-17 19:42:30.678 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:42:30.678 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:30.678 -07 000000593 INF: FPGA: Recv ZSGSRD 36783
17-03-17 19:42:30.688 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:30.688 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:30.688 -07 000000431 INF: FPGA: Recv ZSGSRD 36793
17-03-17 19:42:30.698 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:30.698 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:30.698 -07 000000382 INF: FPGA: Recv ZSGSRD 36792
17-03-17 19:42:30.708 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:30.708 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:30.708 -07 000000551 INF: FPGA: Recv ZSGSRD 36790
17-03-17 19:42:30.718 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:30.718 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:30.718 -07 000000569 INF: FPGA: Recv ZSGSRD 36793
17-03-17 19:42:30.728 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:30.728 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:30.728 -07 000000431 INF: FPGA: Recv ZSGSRD 36791
17-03-17 19:42:30.738 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:30.738 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:30.738 -07 000000541 INF: FPGA: Recv ZSGSRD 36782
17-03-17 19:42:30.748 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:30.748 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:30.748 -07 000000593 INF: FPGA: Recv ZSGSRD 36787
17-03-17 19:42:30.758 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:30.758 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:30.758 -07 000000569 INF: FPGA: Recv ZSGSRD 36787
17-03-17 19:42:30.768 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:30.768 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:30.768 -07 000000438 INF: FPGA: Recv ZPIEZORD 33116
17-03-17 19:42:30.778 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:30.778 -07 000000618 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.889 V. Piezo Error = -8.1 V.
17-03-17 19:42:30.778 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36789 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36790 (-175.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36782 (-175.7 uncal um), Max = 36793 (-175.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:42:30.778 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36789, posNoise = 4, negNoise = 7
17-03-17 19:42:30.778 -07 000000618 INF: Z Motor: After move to -0.176658, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:30.778 -07 000000618 INF: Z Motor: Settle wait time = 1453 ms, measure time = 103 ms (allowed 150 ms), total time = 1556 ms
17-03-17 19:42:30.778 -07 000000618 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:42:30.828 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 19:42:30.828 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:42:30.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:30.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:30.828 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:30.828 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:30.828 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:42:30.828 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:30.828 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:30.828 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:42:30.838 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:42:30.838 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:42:30.848 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:42:30.848 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:42:30.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:42:30.898 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:42:31.098 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:42:31.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:42:31.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:42:31.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:42:31.138 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:42:31.138 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 19:42:31.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 287 ms overall
17-03-17 19:42:31.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:42:31.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:31.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:42:31.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:42:31.238 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:31.238 -07 000000429 INF: Autofocus start
17-03-17 19:42:31.238 -07 000000429 INF: MeasureProfile start
17-03-17 19:42:31.238 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:31.248 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:42:31.248 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:42:31.248 -07 000000429 INF: MeasureProfile done
17-03-17 19:42:31.248 -07 000000429 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:42:31.248 -07 000000429 INF: Autofocus finished
17-03-17 19:42:31.448 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:42:31.448 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:42:31.448 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.176663692494379. ----------
17-03-17 19:42:31.448 -07 000000610 INF: Cycle	29	Tile	8	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:42:31.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37105, sync = True, waitForSettling = True)
17-03-17 19:42:31.458 -07 000000610 INF: Z Motor: Moving to -0.169856 mm, started at -0.176664 mm, distance = 6.81 um
17-03-17 19:42:31.458 -07 000000610 INF: FPGA: Xmit ZDACW 37105\n [Z Motor]
17-03-17 19:42:31.458 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:42:31.468 -07 000000610 INF: FPGA: 'ZDACW 37105' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:31.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:31.468 -07 000000501 INF: FPGA: Recv ZDACR 37105
17-03-17 19:42:31.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:31.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:42:31.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:31.628 -07 000000551 INF: FPGA: Recv ZSGSRD 35729
17-03-17 19:42:31.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:31.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:31.638 -07 000000618 INF: FPGA: Recv ZSGSRD 35734
17-03-17 19:42:31.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:31.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:31.648 -07 000000626 INF: FPGA: Recv ZSGSRD 35729
17-03-17 19:42:31.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:31.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:31.658 -07 000000476 INF: FPGA: Recv ZSGSRD 35727
17-03-17 19:42:31.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:31.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:31.668 -07 000000569 INF: FPGA: Recv ZSGSRD 35732
17-03-17 19:42:31.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:31.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:31.678 -07 000000593 INF: FPGA: Recv ZSGSRD 35726
17-03-17 19:42:31.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:31.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:31.688 -07 000000431 INF: FPGA: Recv ZSGSRD 35732
17-03-17 19:42:31.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:31.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:31.698 -07 000000618 INF: FPGA: Recv ZSGSRD 35729
17-03-17 19:42:31.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:31.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:31.708 -07 000000382 INF: FPGA: Recv ZSGSRD 35732
17-03-17 19:42:31.708 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:42:31.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:42:31.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:31.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:31.718 -07 000000424 INF: FPGA: Recv ZSGSRD 35730
17-03-17 19:42:31.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:31.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:31.728 -07 000000501 INF: FPGA: Recv ZPIEZORD 31720
17-03-17 19:42:31.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:31.738 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.662 V. Piezo Error = -8.9 V.
17-03-17 19:42:31.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35730 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35730 (-169.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35726 (-169.0 uncal um), Max = 35734 (-169.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:42:31.738 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35730, posNoise = 4, negNoise = 4
17-03-17 19:42:31.738 -07 000000610 INF: Z Motor: After move to -0.169856, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:31.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:42:31.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:31.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:31.738 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:31.738 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:31.738 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:42:31.738 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:31.738 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:42:31.738 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:42:31.738 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:42:31.738 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:42:31.738 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:42:31.738 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:42:31.738 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:42:31.748 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:42:31.748 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:42:31.748 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:42:31.748 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:42:31.748 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:42:31.748 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:42:31.748 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:42:31.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 37282 150\n [Camera]
17-03-17 19:42:31.958 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 19:42:32.358 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:42:32.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:42:32.358 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:32.368 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:42:32.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:42:32.368 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:32.368 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:32.368 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) start.
17-03-17 19:42:32.368 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:32.368 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:42:32.558 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37282 789
17-03-17 19:42:32.698 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:42:32.748 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:42:32.748 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:42:32.748 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:32.748 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:42:32.748 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:42:32.748 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:32.748 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:32.748 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:42:32.748 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:32.758 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:42:32.898 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:42:32.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:42:32.898 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:33.008 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:42:33.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:42:33.008 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:33.008 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:33.008 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:42:33.018 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:33.018 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:42:33.088 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:42:33.088 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:42:33.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 37282 150' command took 2 ms to send, 1325 ms to get response, and 1332 ms overall
17-03-17 19:42:33.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:42:33.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.169860451836254. ------
17-03-17 19:42:33.098 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:33.098 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17625 mm
17-03-17 19:42:33.098 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:42:33.098 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:33.098 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:42:33.098 -07 000000382 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 19:42:33.098 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38501, sync = True, waitForSettling = False)
17-03-17 19:42:33.098 -07 000000551 INF: Z Motor: Moving to -0.176246 mm, started at -0.169860 mm, distance = -6.39 um
17-03-17 19:42:33.108 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:42:33.108 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:33.108 -07 000000462 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:42:33.118 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:42:33.118 -07 000000382 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:33.118 -07 000000382 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:42:33.118 -07 000000551 INF: FPGA: Xmit ZDACW 38501\n [Z Motor]
17-03-17 19:42:33.118 -07 000000382 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:42:33.118 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:42:33.128 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:42:33.128 -07 000000551 INF: FPGA: 'ZDACW 38501' command took 3 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:42:33.138 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:42:33.148 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:33.148 -07 000000462 INF: FPGA: Recv ZDACR 38501
17-03-17 19:42:33.158 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:42:33.158 -07 000000551 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 19:42:33.328 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:42:33.328 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:42:33.388 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:42:33.388 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:42:33.388 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:33.398 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:33.398 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:42:33.398 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:42:33.398 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:33.398 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:33.398 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 500 ms.
17-03-17 19:42:33.398 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:42:33.508 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:42:33.508 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:42:33.548 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:33.548 -07 000000438 INF: FPGA: Recv YRDPOS 136272
17-03-17 19:42:33.558 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:42:33.558 -07 000000382 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:33.558 -07 000000382 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:42:33.558 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-17 19:42:34.508 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:34.508 -07 000000551 INF: FPGA: Recv YRDPOS 136272
17-03-17 19:42:34.518 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:34.518 -07 000000382 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:34.528 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.986717,
17-03-17 19:42:34.538 -07 000000382 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:42:34.538 -07 000000382 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:42:34.538 -07 000000382 INF: Y Motor: Moved to 66.5391 after 1439 ms (table move)
17-03-17 19:42:34.538 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176246 mm (DAC = 38501)
17-03-17 19:42:34.558 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:34.558 -07 000000501 INF: FPGA: Recv ZSGSRD 36725
17-03-17 19:42:34.568 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 19:42:34.578 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:34.578 -07 000000561 INF: FPGA: Recv ZSGSRD 36727
17-03-17 19:42:34.588 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:42:34.588 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:34.588 -07 000000424 INF: FPGA: Recv ZSGSRD 36724
17-03-17 19:42:34.598 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:34.608 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:34.608 -07 000000382 INF: FPGA: Recv ZSGSRD 36722
17-03-17 19:42:34.618 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:42:34.618 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:34.618 -07 000000462 INF: FPGA: Recv ZSGSRD 36722
17-03-17 19:42:34.628 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:34.628 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:34.628 -07 000000569 INF: FPGA: Recv ZSGSRD 36725
17-03-17 19:42:34.638 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:34.638 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:34.638 -07 000000431 INF: FPGA: Recv ZSGSRD 36725
17-03-17 19:42:34.648 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:34.648 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:34.648 -07 000000429 INF: FPGA: Recv ZSGSRD 36734
17-03-17 19:42:34.658 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:34.658 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:34.658 -07 000000593 INF: FPGA: Recv ZSGSRD 36726
17-03-17 19:42:34.668 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:34.668 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:34.668 -07 000000501 INF: FPGA: Recv ZSGSRD 36722
17-03-17 19:42:34.678 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:34.678 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:34.678 -07 000000618 INF: FPGA: Recv ZPIEZORD 33037
17-03-17 19:42:34.688 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:34.688 -07 000000541 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.875 V. Piezo Error = -8.2 V.
17-03-17 19:42:34.688 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36725 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36725 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36722 (-175.3 uncal um), Max = 36734 (-175.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:42:34.688 -07 000000541 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36725, posNoise = 9, negNoise = 3
17-03-17 19:42:34.688 -07 000000541 INF: Z Motor: After move to -0.176246, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:34.688 -07 000000541 INF: Z Motor: Settle wait time = 1442 ms, measure time = 142 ms (allowed 150 ms), total time = 1584 ms
17-03-17 19:42:34.688 -07 000000541 INF: Z Motor: Waiting extra 8 ms after reading position to reach expected total of 150 ms
17-03-17 19:42:34.698 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 19:42:34.698 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:42:34.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:34.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:34.698 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:34.698 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:34.698 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:42:34.698 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:34.698 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:34.698 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:42:34.708 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:42:34.708 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:42:34.718 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:42:34.718 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:42:34.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:42:34.768 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:42:34.968 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:42:34.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:42:34.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:42:34.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 19:42:35.008 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:42:35.008 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 19:42:35.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 19:42:35.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 19:42:35.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:35.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:42:35.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 19:42:35.108 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:35.108 -07 000000476 INF: Autofocus start
17-03-17 19:42:35.108 -07 000000476 INF: MeasureProfile start
17-03-17 19:42:35.108 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:35.118 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:42:35.118 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:42:35.118 -07 000000476 INF: MeasureProfile done
17-03-17 19:42:35.118 -07 000000476 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:42:35.118 -07 000000476 INF: Autofocus finished
17-03-17 19:42:35.318 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:42:35.318 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:42:35.318 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.176252542917306. ----------
17-03-17 19:42:35.318 -07 000000610 INF: Cycle	29	Tile	9	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:42:35.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37016, sync = True, waitForSettling = True)
17-03-17 19:42:35.328 -07 000000610 INF: Z Motor: Moving to -0.169448 mm, started at -0.176253 mm, distance = 6.80 um
17-03-17 19:42:35.328 -07 000000610 INF: FPGA: Xmit ZDACW 37016\n [Z Motor]
17-03-17 19:42:35.328 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:42:35.338 -07 000000610 INF: FPGA: 'ZDACW 37016' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:35.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:35.338 -07 000000569 INF: FPGA: Recv ZDACR 37016
17-03-17 19:42:35.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:35.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:42:35.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:35.498 -07 000000561 INF: FPGA: Recv ZSGSRD 35672
17-03-17 19:42:35.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:35.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:35.508 -07 000000501 INF: FPGA: Recv ZSGSRD 35667
17-03-17 19:42:35.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:35.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:35.518 -07 000000382 INF: FPGA: Recv ZSGSRD 35671
17-03-17 19:42:35.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:35.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:35.528 -07 000000541 INF: FPGA: Recv ZSGSRD 35663
17-03-17 19:42:35.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:35.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:35.538 -07 000000424 INF: FPGA: Recv ZSGSRD 35664
17-03-17 19:42:35.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:35.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:35.548 -07 000000429 INF: FPGA: Recv ZSGSRD 35671
17-03-17 19:42:35.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:35.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:35.558 -07 000000382 INF: FPGA: Recv ZSGSRD 35666
17-03-17 19:42:35.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:35.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:35.568 -07 000000541 INF: FPGA: Recv ZSGSRD 35668
17-03-17 19:42:35.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:35.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:35.578 -07 000000424 INF: FPGA: Recv ZSGSRD 35668
17-03-17 19:42:35.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:35.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:35.588 -07 000000541 INF: FPGA: Recv ZSGSRD 35671
17-03-17 19:42:35.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:35.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:35.598 -07 000000569 INF: FPGA: Recv ZPIEZORD 31648
17-03-17 19:42:35.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:35.608 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.648 V. Piezo Error = -8.9 V.
17-03-17 19:42:35.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35668 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35668 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35663 (-168.6 uncal um), Max = 35672 (-168.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:42:35.608 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35668, posNoise = 4, negNoise = 5
17-03-17 19:42:35.608 -07 000000610 INF: Z Motor: After move to -0.169448, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:35.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:42:35.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:35.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:35.608 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:35.608 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:42:35.608 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:42:35.608 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:35.608 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:42:35.608 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:35.608 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:42:35.608 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:42:35.608 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:35.608 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:42:35.618 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:42:35.618 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:42:35.618 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:42:35.618 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:42:35.628 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:42:35.628 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:42:35.628 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:42:35.628 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:42:35.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 37193 150\n [Camera]
17-03-17 19:42:35.828 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:42:36.238 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:42:36.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:42:36.238 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:36.238 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:42:36.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:42:36.238 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:36.238 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:36.238 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:42:36.248 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:36.248 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:42:36.428 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37193 789
17-03-17 19:42:36.578 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:42:36.628 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:42:36.628 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:42:36.628 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:36.628 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:36.628 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:42:36.628 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:42:36.628 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:42:36.628 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:36.638 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:42:36.638 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:42:36.708 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:42:36.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:42:36.768 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:42:36.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:42:36.778 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:36.778 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:42:36.778 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:36.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:42:36.778 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:42:36.778 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:36.778 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:36.778 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:42:36.968 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:42:36.968 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:42:36.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 37193 150' command took 2 ms to send, 1321 ms to get response, and 1332 ms overall
17-03-17 19:42:37.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:42:37.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.169462150683465. ------
17-03-17 19:42:37.088 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:37.088 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17626 mm
17-03-17 19:42:37.088 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:42:37.088 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:42:37.088 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:37.088 -07 000000626 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 19:42:37.098 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:42:37.098 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:37.098 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38504, sync = True, waitForSettling = False)
17-03-17 19:42:37.098 -07 000000501 INF: Z Motor: Moving to -0.176260 mm, started at -0.169462 mm, distance = -6.80 um
17-03-17 19:42:37.098 -07 000000429 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:42:37.108 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:37.108 -07 000000626 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:37.108 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:42:37.108 -07 000000626 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:42:37.108 -07 000000626 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:42:37.118 -07 000000501 INF: FPGA: Xmit ZDACW 38504\n [Z Motor]
17-03-17 19:42:37.118 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:42:37.128 -07 000000501 INF: FPGA: 'ZDACW 38504' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:42:37.128 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:42:37.138 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:37.138 -07 000000431 INF: FPGA: Recv ZDACR 38504
17-03-17 19:42:37.148 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:42:37.148 -07 000000501 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 19:42:37.168 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:42:37.168 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:42:37.168 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:37.168 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:42:37.168 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:42:37.168 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:37.168 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:37.168 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:42:37.168 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:37.178 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:42:37.308 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:42:37.308 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 19:42:37.498 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:42:37.498 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:42:37.538 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:37.538 -07 000000438 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:42:37.548 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:42:37.548 -07 000000626 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:37.548 -07 000000626 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 19:42:37.548 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 19:42:38.498 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:38.498 -07 000000501 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:42:38.508 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:38.508 -07 000000626 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:38.528 -07 000000626 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:42:38.528 -07 000000626 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:42:38.528 -07 000000626 INF: Y Motor: Moved to 67.3721 after 1432 ms (table move)
17-03-17 19:42:38.528 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176260 mm (DAC = 38504)
17-03-17 19:42:38.528 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:38.528 -07 000000429 INF: FPGA: Recv ZSGSRD 36730
17-03-17 19:42:38.538 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:42:38.538 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:38.538 -07 000000618 INF: FPGA: Recv ZSGSRD 36726
17-03-17 19:42:38.548 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:38.548 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:38.548 -07 000000626 INF: FPGA: Recv ZSGSRD 36725
17-03-17 19:42:38.558 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:38.558 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:38.558 -07 000000476 INF: FPGA: Recv ZSGSRD 36727
17-03-17 19:42:38.568 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:38.568 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:38.568 -07 000000424 INF: FPGA: Recv ZSGSRD 36731
17-03-17 19:42:38.578 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:38.578 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:38.578 -07 000000618 INF: FPGA: Recv ZSGSRD 36728
17-03-17 19:42:38.588 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:38.588 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:38.588 -07 000000626 INF: FPGA: Recv ZSGSRD 36728
17-03-17 19:42:38.598 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:38.598 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:38.598 -07 000000382 INF: FPGA: Recv ZSGSRD 36723
17-03-17 19:42:38.608 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:38.608 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:38.608 -07 000000541 INF: FPGA: Recv ZSGSRD 36731
17-03-17 19:42:38.618 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:38.618 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:38.618 -07 000000593 INF: FPGA: Recv ZSGSRD 36728
17-03-17 19:42:38.628 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:38.628 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:38.628 -07 000000429 INF: FPGA: Recv ZPIEZORD 33022
17-03-17 19:42:38.638 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:38.638 -07 000000462 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.875 V. Piezo Error = -8.2 V.
17-03-17 19:42:38.638 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36728 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36728 (-175.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36723 (-175.3 uncal um), Max = 36731 (-175.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:42:38.638 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36728, posNoise = 3, negNoise = 5
17-03-17 19:42:38.638 -07 000000462 INF: Z Motor: After move to -0.176260, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:38.638 -07 000000462 INF: Z Motor: Settle wait time = 1435 ms, measure time = 105 ms (allowed 150 ms), total time = 1540 ms
17-03-17 19:42:38.638 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:42:38.688 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 19:42:38.688 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:42:38.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:38.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:38.688 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:38.688 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:42:38.688 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:38.688 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:38.688 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:42:38.688 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:42:38.698 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:42:38.698 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:42:38.708 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:42:38.708 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:42:38.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:42:38.748 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:42:38.948 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:42:38.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:42:38.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:42:38.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:42:38.988 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:42:38.988 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 19:42:38.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:42:39.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:42:39.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:39.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:42:39.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:42:39.088 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:39.088 -07 000000476 INF: Autofocus start
17-03-17 19:42:39.088 -07 000000476 INF: MeasureProfile start
17-03-17 19:42:39.088 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:39.098 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:42:39.098 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:42:39.108 -07 000000476 INF: MeasureProfile done
17-03-17 19:42:39.108 -07 000000476 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:42:39.108 -07 000000476 INF: Autofocus finished
17-03-17 19:42:39.298 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:42:39.298 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:42:39.298 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.176271815553731. ----------
17-03-17 19:42:39.298 -07 000000610 INF: Cycle	29	Tile	10	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:42:39.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37001, sync = True, waitForSettling = True)
17-03-17 19:42:39.308 -07 000000610 INF: Z Motor: Moving to -0.169380 mm, started at -0.176272 mm, distance = 6.89 um
17-03-17 19:42:39.308 -07 000000610 INF: FPGA: Xmit ZDACW 37001\n [Z Motor]
17-03-17 19:42:39.308 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:42:39.318 -07 000000610 INF: FPGA: 'ZDACW 37001' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:42:39.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:39.318 -07 000000569 INF: FPGA: Recv ZDACR 37001
17-03-17 19:42:39.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:39.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:42:39.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:39.478 -07 000000593 INF: FPGA: Recv ZSGSRD 35664
17-03-17 19:42:39.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:39.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:39.488 -07 000000424 INF: FPGA: Recv ZSGSRD 35653
17-03-17 19:42:39.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:39.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:39.498 -07 000000541 INF: FPGA: Recv ZSGSRD 35663
17-03-17 19:42:39.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:39.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:39.508 -07 000000569 INF: FPGA: Recv ZSGSRD 35652
17-03-17 19:42:39.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:39.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:39.518 -07 000000561 INF: FPGA: Recv ZSGSRD 35655
17-03-17 19:42:39.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:39.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:39.528 -07 000000429 INF: FPGA: Recv ZSGSRD 35659
17-03-17 19:42:39.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:39.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:39.538 -07 000000431 INF: FPGA: Recv ZSGSRD 35654
17-03-17 19:42:39.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:39.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:39.548 -07 000000382 INF: FPGA: Recv ZSGSRD 35659
17-03-17 19:42:39.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:39.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:39.558 -07 000000438 INF: FPGA: Recv ZSGSRD 35660
17-03-17 19:42:39.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:39.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:39.568 -07 000000429 INF: FPGA: Recv ZSGSRD 35655
17-03-17 19:42:39.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:39.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:39.578 -07 000000476 INF: FPGA: Recv ZPIEZORD 31605
17-03-17 19:42:39.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:39.588 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -8.9 V.
17-03-17 19:42:39.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35657 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35657 (-168.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35652 (-168.5 uncal um), Max = 35664 (-168.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:42:39.588 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35657, posNoise = 7, negNoise = 5
17-03-17 19:42:39.588 -07 000000610 INF: Z Motor: After move to -0.169380, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:39.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:42:39.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:39.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:39.588 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:39.588 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:42:39.588 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:39.588 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:42:39.588 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:42:39.588 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:39.588 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:39.588 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:42:39.588 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:42:39.588 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:42:39.598 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:42:39.598 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:42:39.598 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:42:39.598 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:42:39.608 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:42:39.608 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:42:39.608 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:42:39.608 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:42:39.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 37178 150\n [Camera]
17-03-17 19:42:39.808 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:42:39.928 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.009895,
17-03-17 19:42:40.218 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:42:40.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:42:40.218 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:40.218 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:42:40.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:42:40.218 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:40.218 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:40.228 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:40.228 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:42:40.228 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:42:40.408 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37178 789
17-03-17 19:42:40.558 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:42:40.598 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:42:40.598 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:42:40.598 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:40.598 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:40.598 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:42:40.598 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:42:40.598 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:40.608 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:40.608 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:42:40.608 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:42:40.758 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:42:40.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:42:40.758 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:40.758 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:42:40.758 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:40.758 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:42:40.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:42:40.758 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:40.758 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:40.758 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:42:40.948 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:42:40.948 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:42:40.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 37178 150' command took 2 ms to send, 1322 ms to get response, and 1338 ms overall
17-03-17 19:42:40.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:42:40.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.169391484349905. ------
17-03-17 19:42:40.948 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:40.948 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17571 mm
17-03-17 19:42:40.948 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:42:40.958 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38384, sync = True, waitForSettling = False)
17-03-17 19:42:40.958 -07 000000501 INF: Z Motor: Moving to -0.175711 mm, started at -0.169391 mm, distance = -6.32 um
17-03-17 19:42:40.958 -07 000000501 INF: FPGA: Xmit ZDACW 38384\n [Z Motor]
17-03-17 19:42:40.958 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:42:40.958 -07 000000618 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 19:42:40.958 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:40.958 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 19:42:40.958 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:42:40.968 -07 000000501 INF: FPGA: 'ZDACW 38384' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:42:40.968 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:40.968 -07 000000462 INF: FPGA: Recv ZDACR 38384
17-03-17 19:42:40.978 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:40.978 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:40.978 -07 000000501 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-17 19:42:40.978 -07 000000476 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:42:40.988 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:42:40.988 -07 000000618 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:40.988 -07 000000618 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:42:40.988 -07 000000618 INF: Y Motor: Moving 1345 steps-22
17-03-17 19:42:40.988 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:42:40.998 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:42:41.168 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 19:42:41.168 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:42:41.168 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:41.168 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 19:42:41.168 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:42:41.168 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:41.168 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:41.168 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:41.168 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 19:42:41.178 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:42:41.188 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:42:41.188 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 229 ms overall
17-03-17 19:42:41.368 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 19:42:41.368 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:42:41.408 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:41.408 -07 000000569 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:42:41.418 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:42:41.418 -07 000000618 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:41.418 -07 000000618 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:42:41.418 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.841 mm, average velocity = 2.172 mm/sec
17-03-17 19:42:41.708 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:42:41.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:42:42.368 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:42.368 -07 000000541 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:42:42.378 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:42.378 -07 000000618 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:42.398 -07 000000618 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:42:42.398 -07 000000618 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:42:42.398 -07 000000618 INF: Y Motor: Moved to 68.2051 after 1438 ms (table move)
17-03-17 19:42:42.398 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175711 mm (DAC = 38384)
17-03-17 19:42:42.398 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:42.398 -07 000000501 INF: FPGA: Recv ZSGSRD 36648
17-03-17 19:42:42.408 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:42:42.408 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:42.408 -07 000000561 INF: FPGA: Recv ZSGSRD 36643
17-03-17 19:42:42.418 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:42.418 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:42.418 -07 000000424 INF: FPGA: Recv ZSGSRD 36647
17-03-17 19:42:42.428 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:42.428 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:42.428 -07 000000431 INF: FPGA: Recv ZSGSRD 36644
17-03-17 19:42:42.438 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:42.438 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:42.438 -07 000000382 INF: FPGA: Recv ZSGSRD 36645
17-03-17 19:42:42.448 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:42.448 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:42.448 -07 000000561 INF: FPGA: Recv ZSGSRD 36643
17-03-17 19:42:42.458 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:42.458 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:42.458 -07 000000424 INF: FPGA: Recv ZSGSRD 36640
17-03-17 19:42:42.468 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:42.468 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:42.468 -07 000000593 INF: FPGA: Recv ZSGSRD 36636
17-03-17 19:42:42.478 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:42.478 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:42.478 -07 000000618 INF: FPGA: Recv ZSGSRD 36637
17-03-17 19:42:42.488 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:42.488 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:42.488 -07 000000429 INF: FPGA: Recv ZSGSRD 36644
17-03-17 19:42:42.498 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:42.498 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:42.498 -07 000000476 INF: FPGA: Recv ZPIEZORD 32939
17-03-17 19:42:42.508 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:42.508 -07 000000626 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.857 V. Piezo Error = -8.2 V.
17-03-17 19:42:42.508 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36643 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36644 (-174.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36636 (-174.8 uncal um), Max = 36648 (-174.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:42:42.508 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36643, posNoise = 5, negNoise = 7
17-03-17 19:42:42.508 -07 000000626 INF: Z Motor: After move to -0.175711, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:42.508 -07 000000626 INF: Z Motor: Settle wait time = 1442 ms, measure time = 106 ms (allowed 150 ms), total time = 1548 ms
17-03-17 19:42:42.508 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:42:42.558 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 19:42:42.558 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:42:42.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:42.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:42.558 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:42.558 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:42.558 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:42:42.558 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:42.568 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:42:42.568 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:42:42.568 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:42:42.568 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:42:42.578 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:42:42.578 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:42:42.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:42:42.618 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:42:42.818 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:42:42.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:42:42.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:42:42.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1128973584, 0x0, 559484976) start.
17-03-17 19:42:42.858 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:42:42.858 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:42:42.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 279 ms to get response, and 286 ms overall
17-03-17 19:42:42.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1128973584, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:42:42.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:42.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:42:42.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:42:42.958 -07 000000424 INF: Autofocus start
17-03-17 19:42:42.958 -07 000000424 INF: MeasureProfile start
17-03-17 19:42:42.958 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:42.958 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:42.968 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:42:42.968 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:42:42.968 -07 000000424 INF: MeasureProfile done
17-03-17 19:42:42.968 -07 000000424 INF: X=48  Z correction [um]=0.1739867
17-03-17 19:42:42.968 -07 000000424 INF: Autofocus finished
17-03-17 19:42:43.168 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:42:43.168 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:42:43.168 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175725757521682. ----------
17-03-17 19:42:43.168 -07 000000610 INF: Cycle	29	Tile	11	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:42:43.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36934, sync = True, waitForSettling = True)
17-03-17 19:42:43.178 -07 000000610 INF: Z Motor: Moving to -0.169073 mm, started at -0.175726 mm, distance = 6.65 um
17-03-17 19:42:43.178 -07 000000610 INF: FPGA: Xmit ZDACW 36934\n [Z Motor]
17-03-17 19:42:43.178 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:42:43.188 -07 000000610 INF: FPGA: 'ZDACW 36934' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:43.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:43.188 -07 000000551 INF: FPGA: Recv ZDACR 36934
17-03-17 19:42:43.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:43.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:42:43.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:43.348 -07 000000462 INF: FPGA: Recv ZSGSRD 35612
17-03-17 19:42:43.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:43.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:43.358 -07 000000626 INF: FPGA: Recv ZSGSRD 35605
17-03-17 19:42:43.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:43.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:43.368 -07 000000424 INF: FPGA: Recv ZSGSRD 35614
17-03-17 19:42:43.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:43.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:43.378 -07 000000593 INF: FPGA: Recv ZSGSRD 35613
17-03-17 19:42:43.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:43.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:43.388 -07 000000431 INF: FPGA: Recv ZSGSRD 35606
17-03-17 19:42:43.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:43.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:43.398 -07 000000551 INF: FPGA: Recv ZSGSRD 35610
17-03-17 19:42:43.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:43.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:43.408 -07 000000438 INF: FPGA: Recv ZSGSRD 35606
17-03-17 19:42:43.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:43.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:43.418 -07 000000626 INF: FPGA: Recv ZSGSRD 35613
17-03-17 19:42:43.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:43.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:43.428 -07 000000382 INF: FPGA: Recv ZSGSRD 35608
17-03-17 19:42:43.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:43.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:43.438 -07 000000618 INF: FPGA: Recv ZSGSRD 35606
17-03-17 19:42:43.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:43.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:43.448 -07 000000561 INF: FPGA: Recv ZPIEZORD 31561
17-03-17 19:42:43.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:43.458 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -8.9 V.
17-03-17 19:42:43.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35609 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35609 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35605 (-168.2 uncal um), Max = 35614 (-168.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:42:43.458 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35609, posNoise = 5, negNoise = 4
17-03-17 19:42:43.458 -07 000000610 INF: Z Motor: After move to -0.169073, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:43.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:42:43.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:43.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:43.458 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:43.458 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:42:43.458 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:43.458 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:42:43.458 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:42:43.458 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:43.458 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:42:43.458 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:42:43.458 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:42:43.458 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:42:43.468 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:42:43.468 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:42:43.468 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:42:43.468 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:42:43.478 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 19:42:43.478 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:42:43.478 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 19:42:43.478 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:42:43.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 37111 150\n [Camera]
17-03-17 19:42:43.678 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:42:44.088 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:42:44.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:42:44.088 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:44.088 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:44.088 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:42:44.088 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:42:44.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:42:44.088 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:44.088 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:44.088 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:42:44.278 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37111 789
17-03-17 19:42:44.428 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:42:44.478 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:42:44.478 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:42:44.478 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:44.478 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:42:44.478 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:42:44.478 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:44.478 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:44.478 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:44.478 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:42:44.488 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:42:44.618 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:42:44.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:42:44.618 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:44.628 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:44.628 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:42:44.628 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:42:44.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:42:44.628 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:44.628 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:44.628 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:42:44.818 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:42:44.818 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:42:44.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 37111 150' command took 2 ms to send, 1321 ms to get response, and 1333 ms overall
17-03-17 19:42:44.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:42:44.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.169083122167101. ------
17-03-17 19:42:44.938 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:44.938 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17575 mm
17-03-17 19:42:44.938 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:42:44.938 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38394, sync = True, waitForSettling = False)
17-03-17 19:42:44.938 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:44.938 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:42:44.938 -07 000000626 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 19:42:44.938 -07 000000551 INF: Z Motor: Moving to -0.175756 mm, started at -0.169083 mm, distance = -6.67 um
17-03-17 19:42:44.948 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:42:44.948 -07 000000551 INF: FPGA: Xmit ZDACW 38394\n [Z Motor]
17-03-17 19:42:44.948 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:42:44.958 -07 000000551 INF: FPGA: 'ZDACW 38394' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:42:44.958 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:44.958 -07 000000429 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:42:44.968 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:42:44.968 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:42:44.968 -07 000000626 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:44.968 -07 000000626 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:42:44.968 -07 000000626 INF: Y Motor: Moving 1339 steps-15
17-03-17 19:42:44.978 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:44.978 -07 000000429 INF: FPGA: Recv ZDACR 38394
17-03-17 19:42:44.988 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:42:44.988 -07 000000551 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 19:42:44.998 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:42:45.018 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:42:45.018 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:42:45.018 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:45.018 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:42:45.018 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:42:45.018 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:45.018 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:45.028 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:42:45.028 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:42:45.028 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:42:45.168 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:42:45.168 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:42:45.308 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.015368,
17-03-17 19:42:45.378 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 19:42:45.378 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 406 ms overall
17-03-17 19:42:45.408 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:45.408 -07 000000424 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:42:45.418 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:42:45.418 -07 000000626 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:45.418 -07 000000626 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 19:42:45.418 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 406 ms, distance = 0.838 mm, average velocity = 2.063 mm/sec
17-03-17 19:42:46.368 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:46.368 -07 000000424 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:42:46.378 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:46.378 -07 000000626 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:46.398 -07 000000626 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:42:46.398 -07 000000626 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:42:46.398 -07 000000626 INF: Y Motor: Moved to 69.0273 after 1455 ms (table move)
17-03-17 19:42:46.398 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175756 mm (DAC = 38394)
17-03-17 19:42:46.398 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:46.398 -07 000000424 INF: FPGA: Recv ZSGSRD 36655
17-03-17 19:42:46.408 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:42:46.408 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:46.408 -07 000000551 INF: FPGA: Recv ZSGSRD 36653
17-03-17 19:42:46.418 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:46.418 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:46.418 -07 000000429 INF: FPGA: Recv ZSGSRD 36646
17-03-17 19:42:46.428 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:46.428 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:46.428 -07 000000431 INF: FPGA: Recv ZSGSRD 36648
17-03-17 19:42:46.438 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:46.438 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:46.438 -07 000000501 INF: FPGA: Recv ZSGSRD 36646
17-03-17 19:42:46.448 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:46.448 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:46.448 -07 000000551 INF: FPGA: Recv ZSGSRD 36650
17-03-17 19:42:46.458 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:46.458 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:46.458 -07 000000618 INF: FPGA: Recv ZSGSRD 36648
17-03-17 19:42:46.468 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:46.468 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:46.468 -07 000000462 INF: FPGA: Recv ZSGSRD 36645
17-03-17 19:42:46.478 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:46.478 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:46.478 -07 000000476 INF: FPGA: Recv ZSGSRD 36650
17-03-17 19:42:46.488 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:46.488 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:46.488 -07 000000593 INF: FPGA: Recv ZSGSRD 36651
17-03-17 19:42:46.498 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:46.498 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:46.498 -07 000000618 INF: FPGA: Recv ZPIEZORD 32926
17-03-17 19:42:46.508 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:46.508 -07 000000541 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.859 V. Piezo Error = -8.2 V.
17-03-17 19:42:46.508 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36649 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36649 (-174.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36645 (-174.9 uncal um), Max = 36655 (-174.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:42:46.508 -07 000000541 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36649, posNoise = 6, negNoise = 4
17-03-17 19:42:46.508 -07 000000541 INF: Z Motor: After move to -0.175756, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:46.508 -07 000000541 INF: Z Motor: Settle wait time = 1458 ms, measure time = 105 ms (allowed 150 ms), total time = 1563 ms
17-03-17 19:42:46.508 -07 000000541 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:42:46.558 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-17 19:42:46.558 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:42:46.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:46.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:46.558 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:46.558 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:46.558 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:42:46.558 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:46.558 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:46.558 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:42:46.568 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:42:46.568 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:42:46.578 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 19:42:46.578 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:42:46.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:42:46.618 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:42:46.708 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:42:46.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:42:46.818 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:42:46.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:42:46.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:42:46.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:42:46.858 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:42:46.858 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 19:42:46.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 19:42:46.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:42:46.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:46.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:42:46.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:42:46.958 -07 000000438 INF: Autofocus start
17-03-17 19:42:46.958 -07 000000438 INF: MeasureProfile start
17-03-17 19:42:46.958 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:46.958 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:46.968 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:42:46.968 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:42:46.968 -07 000000438 INF: MeasureProfile done
17-03-17 19:42:46.968 -07 000000438 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 19:42:46.968 -07 000000438 INF: Autofocus finished
17-03-17 19:42:47.168 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:42:47.168 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 19:42:47.178 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.175764302794532. ----------
17-03-17 19:42:47.178 -07 000000610 INF: Cycle	29	Tile	12	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:42:47.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36873, sync = True, waitForSettling = True)
17-03-17 19:42:47.178 -07 000000610 INF: Z Motor: Moving to -0.168794 mm, started at -0.175764 mm, distance = 6.97 um
17-03-17 19:42:47.178 -07 000000610 INF: FPGA: Xmit ZDACW 36873\n [Z Motor]
17-03-17 19:42:47.178 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:42:47.188 -07 000000610 INF: FPGA: 'ZDACW 36873' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:42:47.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:47.188 -07 000000382 INF: FPGA: Recv ZDACR 36873
17-03-17 19:42:47.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:47.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:42:47.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:47.348 -07 000000626 INF: FPGA: Recv ZSGSRD 35567
17-03-17 19:42:47.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:47.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:47.358 -07 000000462 INF: FPGA: Recv ZSGSRD 35564
17-03-17 19:42:47.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:47.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:47.368 -07 000000429 INF: FPGA: Recv ZSGSRD 35565
17-03-17 19:42:47.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:47.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:47.378 -07 000000424 INF: FPGA: Recv ZSGSRD 35563
17-03-17 19:42:47.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:47.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:47.388 -07 000000626 INF: FPGA: Recv ZSGSRD 35565
17-03-17 19:42:47.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:47.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:47.398 -07 000000438 INF: FPGA: Recv ZSGSRD 35570
17-03-17 19:42:47.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:47.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:47.408 -07 000000593 INF: FPGA: Recv ZSGSRD 35568
17-03-17 19:42:47.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:47.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:47.418 -07 000000569 INF: FPGA: Recv ZSGSRD 35568
17-03-17 19:42:47.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:47.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:47.428 -07 000000424 INF: FPGA: Recv ZSGSRD 35567
17-03-17 19:42:47.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:47.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:47.438 -07 000000438 INF: FPGA: Recv ZSGSRD 35566
17-03-17 19:42:47.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:47.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:47.448 -07 000000626 INF: FPGA: Recv ZPIEZORD 31491
17-03-17 19:42:47.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:47.458 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.626 V. Piezo Error = -9.0 V.
17-03-17 19:42:47.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35566 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35566 (-167.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35563 (-167.9 uncal um), Max = 35570 (-168.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:42:47.458 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35566, posNoise = 4, negNoise = 3
17-03-17 19:42:47.458 -07 000000610 INF: Z Motor: After move to -0.168794, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:47.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:42:47.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:47.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:47.458 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:47.458 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:42:47.458 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:42:47.458 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:47.458 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:42:47.458 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:47.458 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:42:47.458 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:42:47.458 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:47.458 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:42:47.468 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:42:47.468 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:42:47.468 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:42:47.468 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:42:47.478 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:42:47.478 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:42:47.478 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:42:47.478 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:42:47.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 37050 150\n [Camera]
17-03-17 19:42:47.678 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:42:48.078 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:42:48.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:42:48.078 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:48.088 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:42:48.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:42:48.088 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:48.088 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:42:48.088 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:48.098 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:48.098 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:42:48.268 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37050 789
17-03-17 19:42:48.418 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:42:48.468 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 19:42:48.468 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 19:42:48.468 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:48.468 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 19:42:48.468 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:42:48.468 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:48.468 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:48.468 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:42:48.468 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:48.478 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:42:48.618 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:42:48.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:42:48.618 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:48.618 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:42:48.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:42:48.628 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:48.628 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) start.
17-03-17 19:42:48.628 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:48.628 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:48.628 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 19:42:48.808 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:42:48.808 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:42:48.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 37050 150' command took 2 ms to send, 1325 ms to get response, and 1333 ms overall
17-03-17 19:42:48.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:42:48.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.168806881045005. ------
17-03-17 19:42:48.818 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17515 mm
17-03-17 19:42:48.818 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:42:48.818 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:48.938 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:48.938 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 117 ms to send, 1 ms to get response, and 120 ms overall
17-03-17 19:42:48.938 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38261, sync = True, waitForSettling = False)
17-03-17 19:42:48.938 -07 000000593 INF: Z Motor: Moving to -0.175148 mm, started at -0.168807 mm, distance = -6.34 um
17-03-17 19:42:48.938 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:42:48.938 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:42:48.938 -07 000000551 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 19:42:48.948 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:48.948 -07 000000429 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:42:48.958 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:42:48.958 -07 000000551 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:48.958 -07 000000551 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:42:48.958 -07 000000551 INF: Y Motor: Moving 1352 steps-31
17-03-17 19:42:48.958 -07 000000593 INF: FPGA: Xmit ZDACW 38261\n [Z Motor]
17-03-17 19:42:48.958 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:42:48.968 -07 000000593 INF: FPGA: 'ZDACW 38261' command took 1 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:42:48.968 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:42:48.978 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:48.978 -07 000000561 INF: FPGA: Recv ZDACR 38261
17-03-17 19:42:48.988 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:42:48.988 -07 000000593 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 19:42:49.018 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:42:49.018 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:42:49.018 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:49.018 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 19:42:49.018 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:49.018 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:42:49.018 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:42:49.018 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:49.028 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:49.028 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:42:49.138 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:42:49.138 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:42:49.338 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 19:42:49.338 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:42:49.378 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:49.378 -07 000000476 INF: FPGA: Recv YRDPOS 143080
17-03-17 19:42:49.388 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:42:49.388 -07 000000551 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:49.388 -07 000000551 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:42:49.388 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.184 mm/sec
17-03-17 19:42:50.338 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:50.338 -07 000000431 INF: FPGA: Recv YRDPOS 143080
17-03-17 19:42:50.348 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:50.348 -07 000000551 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:50.368 -07 000000551 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:42:50.368 -07 000000551 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:42:50.368 -07 000000551 INF: Y Motor: Moved to 69.8633 after 1431 ms (table move)
17-03-17 19:42:50.368 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175148 mm (DAC = 38261)
17-03-17 19:42:50.368 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:50.368 -07 000000541 INF: FPGA: Recv ZSGSRD 36556
17-03-17 19:42:50.378 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:42:50.378 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:50.378 -07 000000438 INF: FPGA: Recv ZSGSRD 36553
17-03-17 19:42:50.388 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:50.388 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:50.388 -07 000000561 INF: FPGA: Recv ZSGSRD 36549
17-03-17 19:42:50.398 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:50.398 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:50.398 -07 000000476 INF: FPGA: Recv ZSGSRD 36560
17-03-17 19:42:50.408 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:50.408 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:50.408 -07 000000541 INF: FPGA: Recv ZSGSRD 36561
17-03-17 19:42:50.418 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:50.418 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:50.418 -07 000000438 INF: FPGA: Recv ZSGSRD 36555
17-03-17 19:42:50.428 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:50.428 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:50.428 -07 000000462 INF: FPGA: Recv ZSGSRD 36547
17-03-17 19:42:50.438 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:50.438 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:50.438 -07 000000431 INF: FPGA: Recv ZSGSRD 36556
17-03-17 19:42:50.448 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:50.448 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:50.448 -07 000000593 INF: FPGA: Recv ZSGSRD 36555
17-03-17 19:42:50.458 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:50.458 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:50.458 -07 000000569 INF: FPGA: Recv ZSGSRD 36555
17-03-17 19:42:50.468 -07 000000626 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:50.468 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:50.468 -07 000000462 INF: FPGA: Recv ZPIEZORD 32780
17-03-17 19:42:50.478 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:50.478 -07 000000626 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.838 V. Piezo Error = -8.4 V.
17-03-17 19:42:50.478 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36555 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36555 (-174.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36547 (-174.2 uncal um), Max = 36561 (-174.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:42:50.478 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36555, posNoise = 6, negNoise = 8
17-03-17 19:42:50.478 -07 000000626 INF: Z Motor: After move to -0.175148, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:50.478 -07 000000626 INF: Z Motor: Settle wait time = 1435 ms, measure time = 104 ms (allowed 150 ms), total time = 1539 ms
17-03-17 19:42:50.478 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:42:50.528 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1709 ms
17-03-17 19:42:50.528 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:42:50.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:50.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:50.528 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:50.528 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:50.528 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:42:50.528 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:50.528 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:50.528 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:42:50.538 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:42:50.538 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:42:50.538 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:42:50.538 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:42:50.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:42:50.588 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:42:50.668 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.011254,
17-03-17 19:42:50.788 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:42:50.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:42:50.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:42:50.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:42:50.828 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:42:50.828 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:42:50.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:42:50.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:42:50.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:50.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:42:50.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:42:50.928 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:50.928 -07 000000382 INF: Autofocus start
17-03-17 19:42:50.928 -07 000000382 INF: MeasureProfile start
17-03-17 19:42:50.928 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:50.938 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:42:50.938 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:42:50.938 -07 000000382 INF: MeasureProfile done
17-03-17 19:42:50.938 -07 000000382 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:42:50.938 -07 000000382 INF: Autofocus finished
17-03-17 19:42:51.138 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:42:51.138 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:42:51.138 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.175160426853207. ----------
17-03-17 19:42:51.138 -07 000000610 INF: Cycle	29	Tile	13	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:42:51.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36794, sync = True, waitForSettling = True)
17-03-17 19:42:51.148 -07 000000610 INF: Z Motor: Moving to -0.168432 mm, started at -0.175160 mm, distance = 6.73 um
17-03-17 19:42:51.148 -07 000000610 INF: FPGA: Xmit ZDACW 36794\n [Z Motor]
17-03-17 19:42:51.148 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:42:51.158 -07 000000610 INF: FPGA: 'ZDACW 36794' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:42:51.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:51.158 -07 000000438 INF: FPGA: Recv ZDACR 36794
17-03-17 19:42:51.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:51.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:42:51.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:51.318 -07 000000561 INF: FPGA: Recv ZSGSRD 35513
17-03-17 19:42:51.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:51.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:51.328 -07 000000569 INF: FPGA: Recv ZSGSRD 35509
17-03-17 19:42:51.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:51.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:51.338 -07 000000593 INF: FPGA: Recv ZSGSRD 35513
17-03-17 19:42:51.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:51.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:51.348 -07 000000551 INF: FPGA: Recv ZSGSRD 35509
17-03-17 19:42:51.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:51.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:51.358 -07 000000501 INF: FPGA: Recv ZSGSRD 35505
17-03-17 19:42:51.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:51.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:51.368 -07 000000626 INF: FPGA: Recv ZSGSRD 35514
17-03-17 19:42:51.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:51.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:51.378 -07 000000424 INF: FPGA: Recv ZSGSRD 35508
17-03-17 19:42:51.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:51.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:51.388 -07 000000593 INF: FPGA: Recv ZSGSRD 35512
17-03-17 19:42:51.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:51.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:51.398 -07 000000438 INF: FPGA: Recv ZSGSRD 35512
17-03-17 19:42:51.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:51.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:51.408 -07 000000626 INF: FPGA: Recv ZSGSRD 35506
17-03-17 19:42:51.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:51.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:51.418 -07 000000424 INF: FPGA: Recv ZPIEZORD 31411
17-03-17 19:42:51.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:51.428 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.614 V. Piezo Error = -9.0 V.
17-03-17 19:42:51.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35510 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35510 (-167.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35505 (-167.5 uncal um), Max = 35514 (-167.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:42:51.428 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35510, posNoise = 4, negNoise = 5
17-03-17 19:42:51.428 -07 000000610 INF: Z Motor: After move to -0.168432, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:51.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:42:51.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:51.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:51.428 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:42:51.428 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:51.428 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:51.428 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:42:51.428 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:42:51.428 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:42:51.428 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:42:51.428 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:51.428 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:42:51.428 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:42:51.438 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:42:51.438 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:42:51.438 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:42:51.438 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:42:51.448 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:42:51.448 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:42:51.448 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:42:51.448 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:42:51.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 36971 150\n [Camera]
17-03-17 19:42:51.648 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:42:51.708 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:42:51.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:42:52.048 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:42:52.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:42:52.048 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:52.058 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:42:52.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:42:52.058 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:52.058 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:52.058 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:42:52.068 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:52.068 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:42:52.248 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36971 789
17-03-17 19:42:52.398 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:42:52.438 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:42:52.438 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:42:52.438 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:52.438 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:42:52.438 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:42:52.438 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:52.438 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:52.438 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:42:52.438 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:52.448 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:42:52.588 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:42:52.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:42:52.588 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:52.598 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:42:52.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:42:52.598 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:52.598 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:52.598 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:42:52.598 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:52.598 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 19:42:52.778 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:42:52.778 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:42:52.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 36971 150' command took 2 ms to send, 1327 ms to get response, and 1332 ms overall
17-03-17 19:42:52.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:42:52.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.168447125165067. ------
17-03-17 19:42:52.788 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:52.788 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17487 mm
17-03-17 19:42:52.788 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:42:52.788 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 38199, sync = True, waitForSettling = False)
17-03-17 19:42:52.788 -07 000000476 INF: Z Motor: Moving to -0.174864 mm, started at -0.168447 mm, distance = -6.42 um
17-03-17 19:42:52.788 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:52.798 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:42:52.798 -07 000000561 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 19:42:52.798 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:42:52.798 -07 000000476 INF: FPGA: Xmit ZDACW 38199\n [Z Motor]
17-03-17 19:42:52.798 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:42:52.808 -07 000000476 INF: FPGA: 'ZDACW 38199' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:42:52.808 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:52.808 -07 000000626 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:42:52.818 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:42:52.818 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:42:52.818 -07 000000561 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:52.818 -07 000000561 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:42:52.818 -07 000000561 INF: Y Motor: Moving 1342 steps-19
17-03-17 19:42:52.828 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:52.828 -07 000000569 INF: FPGA: Recv ZDACR 38199
17-03-17 19:42:52.838 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:42:52.838 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:42:52.838 -07 000000476 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 19:42:52.988 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:42:52.988 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:42:52.988 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:52.998 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 19:42:52.998 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:42:52.998 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:52.998 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:42:52.998 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:42:52.998 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 19:42:53.008 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:42:53.018 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:42:53.018 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:42:53.208 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 19:42:53.208 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 19:42:53.248 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:53.248 -07 000000431 INF: FPGA: Recv YRDPOS 144770
17-03-17 19:42:53.258 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:42:53.258 -07 000000561 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:53.258 -07 000000561 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:42:53.258 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.125 mm/sec
17-03-17 19:42:54.208 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:54.208 -07 000000541 INF: FPGA: Recv YRDPOS 144770
17-03-17 19:42:54.218 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:54.218 -07 000000561 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:54.238 -07 000000561 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:42:54.238 -07 000000561 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:42:54.238 -07 000000561 INF: Y Motor: Moved to 70.6885 after 1442 ms (table move)
17-03-17 19:42:54.238 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174864 mm (DAC = 38199)
17-03-17 19:42:54.238 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:54.238 -07 000000431 INF: FPGA: Recv ZSGSRD 36513
17-03-17 19:42:54.248 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:42:54.248 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:54.248 -07 000000593 INF: FPGA: Recv ZSGSRD 36503
17-03-17 19:42:54.258 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:54.258 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:54.258 -07 000000501 INF: FPGA: Recv ZSGSRD 36514
17-03-17 19:42:54.268 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:54.268 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:54.268 -07 000000561 INF: FPGA: Recv ZSGSRD 36508
17-03-17 19:42:54.278 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:54.278 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:54.278 -07 000000382 INF: FPGA: Recv ZSGSRD 36507
17-03-17 19:42:54.288 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:54.288 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:54.288 -07 000000593 INF: FPGA: Recv ZSGSRD 36508
17-03-17 19:42:54.298 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:54.298 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:54.298 -07 000000476 INF: FPGA: Recv ZSGSRD 36513
17-03-17 19:42:54.308 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:54.308 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:54.308 -07 000000569 INF: FPGA: Recv ZSGSRD 36506
17-03-17 19:42:54.318 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:54.318 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:54.318 -07 000000382 INF: FPGA: Recv ZSGSRD 36503
17-03-17 19:42:54.328 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:54.328 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:54.328 -07 000000431 INF: FPGA: Recv ZSGSRD 36513
17-03-17 19:42:54.338 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:54.338 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:54.338 -07 000000476 INF: FPGA: Recv ZPIEZORD 32753
17-03-17 19:42:54.348 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:54.348 -07 000000551 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.829 V. Piezo Error = -8.3 V.
17-03-17 19:42:54.348 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36509 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36508 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36503 (-173.9 uncal um), Max = 36514 (-174.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:42:54.348 -07 000000551 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36509, posNoise = 5, negNoise = 6
17-03-17 19:42:54.348 -07 000000551 INF: Z Motor: After move to -0.174864, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:54.348 -07 000000551 INF: Z Motor: Settle wait time = 1446 ms, measure time = 105 ms (allowed 150 ms), total time = 1551 ms
17-03-17 19:42:54.348 -07 000000551 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:42:54.398 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 19:42:54.398 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:42:54.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:54.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:54.398 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:54.398 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:54.398 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:42:54.398 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:54.398 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:54.408 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:42:54.408 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:42:54.408 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:42:54.418 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:42:54.418 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:42:54.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:42:54.468 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:42:54.668 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:42:54.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:42:54.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:42:54.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1162196864, 0x0, 559484976) start.
17-03-17 19:42:54.708 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:42:54.708 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:42:54.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 19:42:54.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1162196864, 0x0, 559484976) end. Duration was 130 ms.
17-03-17 19:42:54.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:54.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:42:54.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 132 ms.
17-03-17 19:42:54.908 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:54.908 -07 000000593 INF: Autofocus start
17-03-17 19:42:54.908 -07 000000593 INF: MeasureProfile start
17-03-17 19:42:54.908 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:54.918 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:42:54.918 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:42:54.928 -07 000000593 INF: MeasureProfile done
17-03-17 19:42:54.928 -07 000000593 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:42:54.928 -07 000000593 INF: Autofocus finished
17-03-17 19:42:55.118 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:42:55.118 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:42:55.118 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.174864913094686. ----------
17-03-17 19:42:55.118 -07 000000610 INF: Cycle	29	Tile	14	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:42:55.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36696, sync = True, waitForSettling = True)
17-03-17 19:42:55.128 -07 000000610 INF: Z Motor: Moving to -0.167984 mm, started at -0.174865 mm, distance = 6.88 um
17-03-17 19:42:55.128 -07 000000610 INF: FPGA: Xmit ZDACW 36696\n [Z Motor]
17-03-17 19:42:55.128 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:42:55.138 -07 000000610 INF: FPGA: 'ZDACW 36696' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:55.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:55.138 -07 000000618 INF: FPGA: Recv ZDACR 36696
17-03-17 19:42:55.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:55.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:42:55.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:55.298 -07 000000561 INF: FPGA: Recv ZSGSRD 35440
17-03-17 19:42:55.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:55.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:55.308 -07 000000382 INF: FPGA: Recv ZSGSRD 35439
17-03-17 19:42:55.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:55.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:55.318 -07 000000551 INF: FPGA: Recv ZSGSRD 35437
17-03-17 19:42:55.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:55.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:55.328 -07 000000569 INF: FPGA: Recv ZSGSRD 35440
17-03-17 19:42:55.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:55.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:55.338 -07 000000561 INF: FPGA: Recv ZSGSRD 35437
17-03-17 19:42:55.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:55.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:55.348 -07 000000438 INF: FPGA: Recv ZSGSRD 35439
17-03-17 19:42:55.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:55.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:55.358 -07 000000551 INF: FPGA: Recv ZSGSRD 35439
17-03-17 19:42:55.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:55.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:55.368 -07 000000541 INF: FPGA: Recv ZSGSRD 35440
17-03-17 19:42:55.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:55.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:55.378 -07 000000561 INF: FPGA: Recv ZSGSRD 35437
17-03-17 19:42:55.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:55.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:55.388 -07 000000438 INF: FPGA: Recv ZSGSRD 35436
17-03-17 19:42:55.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:55.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:55.398 -07 000000569 INF: FPGA: Recv ZPIEZORD 31348
17-03-17 19:42:55.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:42:55.408 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.599 V. Piezo Error = -9.0 V.
17-03-17 19:42:55.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35438 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35439 (-167.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35436 (-167.1 uncal um), Max = 35440 (-167.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 19:42:55.408 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35438, posNoise = 2, negNoise = 2
17-03-17 19:42:55.408 -07 000000610 INF: Z Motor: After move to -0.167984, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:55.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:42:55.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:55.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:55.408 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:55.408 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:55.408 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:42:55.408 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:42:55.408 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:42:55.408 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:55.408 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:42:55.408 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:42:55.408 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:55.408 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:42:55.408 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:42:55.408 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:42:55.418 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:42:55.418 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:42:55.418 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:42:55.418 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:42:55.418 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:42:55.418 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:42:55.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 36873 150\n [Camera]
17-03-17 19:42:55.628 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:42:56.028 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:42:56.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:42:56.028 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:56.028 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:56.028 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:42:56.038 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.024884,
17-03-17 19:42:56.038 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:42:56.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:42:56.038 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:56.038 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:56.038 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:42:56.218 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36873 789
17-03-17 19:42:56.368 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:42:56.408 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:42:56.418 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:42:56.418 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:56.418 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:42:56.418 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:42:56.418 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:56.418 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:56.418 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:42:56.418 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:42:56.428 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:42:56.568 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:42:56.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:42:56.568 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:56.568 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:56.568 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:42:56.568 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:42:56.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:42:56.568 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:56.568 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:56.568 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:42:56.708 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:42:56.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:42:56.828 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:42:56.828 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:42:56.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 36873 150' command took 4 ms to send, 1395 ms to get response, and 1404 ms overall
17-03-17 19:42:56.828 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:42:56.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.16798458189086. ------
17-03-17 19:42:56.838 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17465 mm
17-03-17 19:42:56.838 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:42:56.838 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:56.838 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:56.838 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:42:56.838 -07 000000501 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 19:42:56.838 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38152, sync = True, waitForSettling = False)
17-03-17 19:42:56.838 -07 000000382 INF: Z Motor: Moving to -0.174649 mm, started at -0.167985 mm, distance = -6.66 um
17-03-17 19:42:56.848 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:42:56.848 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:56.848 -07 000000626 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:42:56.858 -07 000000382 INF: FPGA: Xmit ZDACW 38152\n [Z Motor]
17-03-17 19:42:56.858 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:42:56.858 -07 000000501 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:56.858 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:42:56.858 -07 000000501 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:42:56.858 -07 000000501 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:42:56.868 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:42:56.868 -07 000000382 INF: FPGA: 'ZDACW 38152' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:42:56.878 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:42:56.888 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:56.888 -07 000000626 INF: FPGA: Recv ZDACR 38152
17-03-17 19:42:56.898 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:42:56.898 -07 000000382 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 19:42:56.958 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 19:42:56.958 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:42:56.958 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:56.958 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:42:56.958 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:42:56.958 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:56.958 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:42:56.968 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:42:56.968 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:42:56.968 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:42:57.068 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:42:57.068 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:42:57.248 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 19:42:57.248 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 19:42:57.288 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:57.288 -07 000000431 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:42:57.298 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:42:57.298 -07 000000501 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:57.298 -07 000000501 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:42:57.298 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.159 mm/sec
17-03-17 19:42:58.248 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:42:58.248 -07 000000382 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:42:58.258 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:58.258 -07 000000501 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:42:58.278 -07 000000501 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:42:58.278 -07 000000501 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:42:58.278 -07 000000501 INF: Y Motor: Moved to 71.5190 after 1435 ms (table move)
17-03-17 19:42:58.278 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174649 mm (DAC = 38152)
17-03-17 19:42:58.278 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:58.278 -07 000000431 INF: FPGA: Recv ZSGSRD 36483
17-03-17 19:42:58.288 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:42:58.288 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:58.288 -07 000000569 INF: FPGA: Recv ZSGSRD 36473
17-03-17 19:42:58.298 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:58.298 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:58.298 -07 000000551 INF: FPGA: Recv ZSGSRD 36472
17-03-17 19:42:58.308 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:58.308 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:58.308 -07 000000429 INF: FPGA: Recv ZSGSRD 36477
17-03-17 19:42:58.318 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:58.318 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:58.318 -07 000000438 INF: FPGA: Recv ZSGSRD 36472
17-03-17 19:42:58.328 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:58.328 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:58.328 -07 000000541 INF: FPGA: Recv ZSGSRD 36485
17-03-17 19:42:58.338 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:58.338 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:58.338 -07 000000551 INF: FPGA: Recv ZSGSRD 36478
17-03-17 19:42:58.348 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:58.348 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:58.348 -07 000000429 INF: FPGA: Recv ZSGSRD 36470
17-03-17 19:42:58.358 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:58.358 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:58.358 -07 000000438 INF: FPGA: Recv ZSGSRD 36475
17-03-17 19:42:58.368 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:58.368 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:58.368 -07 000000541 INF: FPGA: Recv ZSGSRD 36473
17-03-17 19:42:58.378 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:58.378 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:58.378 -07 000000551 INF: FPGA: Recv ZPIEZORD 32693
17-03-17 19:42:58.388 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:58.388 -07 000000618 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.822 V. Piezo Error = -8.4 V.
17-03-17 19:42:58.388 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36476 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36474 (-173.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36470 (-173.7 uncal um), Max = 36485 (-173.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:42:58.388 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36476, posNoise = 9, negNoise = 6
17-03-17 19:42:58.388 -07 000000618 INF: Z Motor: After move to -0.174649, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:58.388 -07 000000618 INF: Z Motor: Settle wait time = 1439 ms, measure time = 105 ms (allowed 150 ms), total time = 1544 ms
17-03-17 19:42:58.388 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:42:58.438 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 19:42:58.438 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:42:58.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:58.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:58.438 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:42:58.438 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:58.438 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:58.438 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:58.438 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:42:58.438 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:42:58.448 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:42:58.448 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:42:58.458 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:42:58.458 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:42:58.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:42:58.508 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:42:58.708 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:42:58.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:42:58.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:42:58.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:42:58.748 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:42:58.748 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 19:42:58.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 19:42:58.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:42:58.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:42:58.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:42:58.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:42:58.848 -07 000000541 INF: Autofocus start
17-03-17 19:42:58.848 -07 000000541 INF: MeasureProfile start
17-03-17 19:42:58.848 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:42:58.848 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:42:58.858 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:42:58.858 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:42:58.858 -07 000000541 INF: MeasureProfile done
17-03-17 19:42:58.858 -07 000000541 INF: X=48  Z correction [um]=0.1739867
17-03-17 19:42:58.858 -07 000000541 INF: Autofocus finished
17-03-17 19:42:59.058 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:42:59.058 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:42:59.058 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174652914094008. ----------
17-03-17 19:42:59.058 -07 000000610 INF: Cycle	29	Tile	15	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:42:59.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36702, sync = True, waitForSettling = True)
17-03-17 19:42:59.068 -07 000000610 INF: Z Motor: Moving to -0.168011 mm, started at -0.174653 mm, distance = 6.64 um
17-03-17 19:42:59.068 -07 000000610 INF: FPGA: Xmit ZDACW 36702\n [Z Motor]
17-03-17 19:42:59.068 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:42:59.078 -07 000000610 INF: FPGA: 'ZDACW 36702' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:42:59.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:42:59.078 -07 000000626 INF: FPGA: Recv ZDACR 36702
17-03-17 19:42:59.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:59.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:42:59.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:59.238 -07 000000501 INF: FPGA: Recv ZSGSRD 35442
17-03-17 19:42:59.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:42:59.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:59.248 -07 000000551 INF: FPGA: Recv ZSGSRD 35452
17-03-17 19:42:59.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:59.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:59.258 -07 000000424 INF: FPGA: Recv ZSGSRD 35442
17-03-17 19:42:59.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:59.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:59.268 -07 000000438 INF: FPGA: Recv ZSGSRD 35444
17-03-17 19:42:59.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:59.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:59.278 -07 000000429 INF: FPGA: Recv ZSGSRD 35442
17-03-17 19:42:59.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:59.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:59.288 -07 000000501 INF: FPGA: Recv ZSGSRD 35442
17-03-17 19:42:59.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:59.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:59.298 -07 000000382 INF: FPGA: Recv ZSGSRD 35447
17-03-17 19:42:59.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:59.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:59.308 -07 000000431 INF: FPGA: Recv ZSGSRD 35441
17-03-17 19:42:59.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:59.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:59.318 -07 000000593 INF: FPGA: Recv ZSGSRD 35443
17-03-17 19:42:59.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:59.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:42:59.328 -07 000000501 INF: FPGA: Recv ZSGSRD 35445
17-03-17 19:42:59.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:59.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:42:59.338 -07 000000476 INF: FPGA: Recv ZPIEZORD 31350
17-03-17 19:42:59.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:42:59.348 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.0 V.
17-03-17 19:42:59.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35444 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35442 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35441 (-167.1 uncal um), Max = 35452 (-167.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:42:59.348 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35444, posNoise = 8, negNoise = 3
17-03-17 19:42:59.348 -07 000000610 INF: Z Motor: After move to -0.168011, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:42:59.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:42:59.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:42:59.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:42:59.348 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:42:59.348 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:42:59.348 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:42:59.348 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:42:59.348 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:42:59.348 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:42:59.348 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:42:59.348 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:42:59.348 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:42:59.348 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:42:59.358 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:42:59.358 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:42:59.358 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:42:59.358 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:42:59.368 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:42:59.368 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:42:59.368 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 19:42:59.368 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:42:59.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 36879 150\n [Camera]
17-03-17 19:42:59.568 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:42:59.978 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:42:59.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:42:59.978 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:42:59.978 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:42:59.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:42:59.978 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:42:59.978 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:42:59.978 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:42:59.988 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:42:59.988 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:43:00.168 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36879 789
17-03-17 19:43:00.318 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:43:00.358 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:43:00.358 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:43:00.358 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:00.358 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 19:43:00.358 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:43:00.358 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:00.358 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:00.368 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:00.368 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:43:00.368 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:43:00.508 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:43:00.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:43:00.508 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:00.518 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:43:00.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:43:00.518 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:00.518 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:00.518 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:43:00.518 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:00.518 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:43:00.698 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:43:00.698 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:43:00.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 36879 150' command took 2 ms to send, 1329 ms to get response, and 1333 ms overall
17-03-17 19:43:00.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:43:00.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.16802312716371. ------
17-03-17 19:43:00.708 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:00.818 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17393 mm
17-03-17 19:43:00.818 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:43:00.828 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:00.828 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37996, sync = True, waitForSettling = False)
17-03-17 19:43:00.828 -07 000000462 INF: Z Motor: Moving to -0.173935 mm, started at -0.168023 mm, distance = -5.91 um
17-03-17 19:43:00.828 -07 000000462 INF: FPGA: Xmit ZDACW 37996\n [Z Motor]
17-03-17 19:43:00.828 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:43:00.828 -07 000000626 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 19:43:00.828 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 115 ms to send, 1 ms to get response, and 118 ms overall
17-03-17 19:43:00.828 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:43:00.838 -07 000000462 INF: FPGA: 'ZDACW 37996' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:43:00.838 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:00.838 -07 000000438 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:43:00.848 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:43:00.848 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:43:00.848 -07 000000626 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:00.848 -07 000000626 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:43:00.848 -07 000000626 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:43:00.858 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:00.858 -07 000000541 INF: FPGA: Recv ZDACR 37996
17-03-17 19:43:00.868 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:43:00.868 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:43:00.868 -07 000000462 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 19:43:00.908 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 19:43:00.908 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:43:00.908 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:00.908 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:43:00.918 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:43:00.918 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:00.918 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:00.918 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:00.918 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:43:00.918 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:43:01.048 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:43:01.048 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 19:43:01.238 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 19:43:01.238 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:43:01.278 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:01.278 -07 000000431 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:43:01.288 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:43:01.288 -07 000000626 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:01.288 -07 000000626 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:43:01.288 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 19:43:01.408 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.024884,
17-03-17 19:43:01.708 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:43:01.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:43:02.238 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:02.238 -07 000000429 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:43:02.248 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:02.248 -07 000000626 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:02.268 -07 000000626 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:43:02.268 -07 000000626 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:43:02.268 -07 000000626 INF: Y Motor: Moved to 72.3496 after 1439 ms (table move)
17-03-17 19:43:02.268 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173935 mm (DAC = 37996)
17-03-17 19:43:02.268 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:02.268 -07 000000551 INF: FPGA: Recv ZSGSRD 36368
17-03-17 19:43:02.278 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:43:02.278 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:02.278 -07 000000626 INF: FPGA: Recv ZSGSRD 36365
17-03-17 19:43:02.288 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:02.288 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:02.288 -07 000000569 INF: FPGA: Recv ZSGSRD 36366
17-03-17 19:43:02.298 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:02.298 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:02.298 -07 000000438 INF: FPGA: Recv ZSGSRD 36366
17-03-17 19:43:02.308 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:02.308 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:02.308 -07 000000551 INF: FPGA: Recv ZSGSRD 36363
17-03-17 19:43:02.318 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:02.318 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:02.318 -07 000000626 INF: FPGA: Recv ZSGSRD 36368
17-03-17 19:43:02.328 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:02.328 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:02.328 -07 000000476 INF: FPGA: Recv ZSGSRD 36363
17-03-17 19:43:02.338 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:02.338 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:02.338 -07 000000431 INF: FPGA: Recv ZSGSRD 36363
17-03-17 19:43:02.348 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:02.348 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:02.348 -07 000000541 INF: FPGA: Recv ZSGSRD 36367
17-03-17 19:43:02.358 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:02.358 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:02.358 -07 000000561 INF: FPGA: Recv ZSGSRD 36361
17-03-17 19:43:02.368 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:02.368 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:02.368 -07 000000476 INF: FPGA: Recv ZPIEZORD 32607
17-03-17 19:43:02.378 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:02.378 -07 000000618 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.798 V. Piezo Error = -8.3 V.
17-03-17 19:43:02.378 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36365 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36366 (-173.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36361 (-173.0 uncal um), Max = 36368 (-173.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:43:02.378 -07 000000618 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36365, posNoise = 3, negNoise = 4
17-03-17 19:43:02.378 -07 000000618 INF: Z Motor: After move to -0.173935, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:02.378 -07 000000618 INF: Z Motor: Settle wait time = 1443 ms, measure time = 105 ms (allowed 150 ms), total time = 1548 ms
17-03-17 19:43:02.378 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:43:02.428 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 19:43:02.428 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:43:02.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:02.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:02.428 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:02.428 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:02.428 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:43:02.428 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:02.428 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:43:02.428 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:43:02.438 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:43:02.438 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:43:02.438 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:43:02.448 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:43:02.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:43:02.498 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 19:43:02.698 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 19:43:02.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 19:43:02.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:43:02.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:43:02.728 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:43:02.728 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:43:02.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:43:02.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:43:02.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:02.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:43:02.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 19:43:02.828 -07 000000429 INF: Autofocus start
17-03-17 19:43:02.828 -07 000000429 INF: MeasureProfile start
17-03-17 19:43:02.828 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:02.828 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:02.838 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:43:02.838 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:43:02.838 -07 000000429 INF: MeasureProfile done
17-03-17 19:43:02.838 -07 000000429 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:43:02.838 -07 000000429 INF: Autofocus finished
17-03-17 19:43:03.038 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:43:03.038 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:43:03.038 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173939826546272. ----------
17-03-17 19:43:03.038 -07 000000610 INF: Cycle	29	Tile	16	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:43:03.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36493, sync = True, waitForSettling = True)
17-03-17 19:43:03.048 -07 000000610 INF: Z Motor: Moving to -0.167054 mm, started at -0.173940 mm, distance = 6.89 um
17-03-17 19:43:03.048 -07 000000610 INF: FPGA: Xmit ZDACW 36493\n [Z Motor]
17-03-17 19:43:03.048 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:43:03.058 -07 000000610 INF: FPGA: 'ZDACW 36493' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:43:03.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:03.058 -07 000000626 INF: FPGA: Recv ZDACR 36493
17-03-17 19:43:03.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:03.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:43:03.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:03.218 -07 000000593 INF: FPGA: Recv ZSGSRD 35294
17-03-17 19:43:03.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:03.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:03.228 -07 000000431 INF: FPGA: Recv ZSGSRD 35288
17-03-17 19:43:03.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:03.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:03.238 -07 000000618 INF: FPGA: Recv ZSGSRD 35296
17-03-17 19:43:03.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:03.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:03.248 -07 000000626 INF: FPGA: Recv ZSGSRD 35300
17-03-17 19:43:03.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:03.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:03.258 -07 000000593 INF: FPGA: Recv ZSGSRD 35300
17-03-17 19:43:03.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:03.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:03.268 -07 000000476 INF: FPGA: Recv ZSGSRD 35300
17-03-17 19:43:03.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:03.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:03.278 -07 000000551 INF: FPGA: Recv ZSGSRD 35292
17-03-17 19:43:03.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:03.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:03.288 -07 000000501 INF: FPGA: Recv ZSGSRD 35300
17-03-17 19:43:03.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:03.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:03.298 -07 000000569 INF: FPGA: Recv ZSGSRD 35292
17-03-17 19:43:03.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:03.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:03.308 -07 000000424 INF: FPGA: Recv ZSGSRD 35294
17-03-17 19:43:03.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:03.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:03.318 -07 000000382 INF: FPGA: Recv ZPIEZORD 31164
17-03-17 19:43:03.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:03.328 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.568 V. Piezo Error = -9.1 V.
17-03-17 19:43:03.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35296 (-166.2 uncal um), Error = 0.8 uncal um, Median = 35295 (-166.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35288 (-166.2 uncal um), Max = 35300 (-166.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:43:03.328 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35296, posNoise = 4, negNoise = 8
17-03-17 19:43:03.328 -07 000000610 INF: Z Motor: After move to -0.167054, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:03.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:43:03.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:03.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:03.328 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:03.328 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:03.328 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:43:03.328 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:43:03.328 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:43:03.328 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:03.328 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:43:03.328 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:43:03.328 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:03.328 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:43:03.338 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:43:03.338 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:43:03.338 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:43:03.338 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:43:03.348 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:43:03.348 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:43:03.348 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:43:03.348 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:43:03.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 36669 150\n [Camera]
17-03-17 19:43:03.548 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:43:03.948 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:43:03.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:43:03.948 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:03.958 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:43:03.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:43:03.958 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:03.958 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:03.958 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:43:03.958 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:03.958 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:43:04.148 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36669 789
17-03-17 19:43:04.298 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:43:04.338 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:43:04.338 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:43:04.338 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:04.348 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:04.348 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:43:04.348 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:43:04.348 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:04.348 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:04.348 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:43:04.348 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:43:04.488 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:43:04.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:43:04.488 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:04.488 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:04.488 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:43:04.498 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:43:04.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:43:04.498 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:04.498 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:04.498 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 19:43:04.678 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:43:04.678 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:43:04.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 36669 150' command took 2 ms to send, 1326 ms to get response, and 1333 ms overall
17-03-17 19:43:04.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:43:04.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.16707234376673. ------
17-03-17 19:43:04.688 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:04.688 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17364 mm
17-03-17 19:43:04.688 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:43:04.688 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:43:04.688 -07 000000569 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 19:43:04.688 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:04.688 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37932, sync = True, waitForSettling = False)
17-03-17 19:43:04.688 -07 000000424 INF: Z Motor: Moving to -0.173642 mm, started at -0.167072 mm, distance = -6.57 um
17-03-17 19:43:04.698 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:43:04.698 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:04.698 -07 000000626 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:43:04.708 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:43:04.708 -07 000000569 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:04.708 -07 000000569 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:43:04.708 -07 000000569 INF: Y Motor: Moving 1349 steps-27
17-03-17 19:43:04.708 -07 000000424 INF: FPGA: Xmit ZDACW 37932\n [Z Motor]
17-03-17 19:43:04.708 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:43:04.718 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:43:04.718 -07 000000424 INF: FPGA: 'ZDACW 37932' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 19:43:04.728 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:43:04.738 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:04.738 -07 000000626 INF: FPGA: Recv ZDACR 37932
17-03-17 19:43:04.748 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:43:04.748 -07 000000424 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 19:43:04.888 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 19:43:04.888 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:43:04.888 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:04.898 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:43:04.898 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:04.898 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:43:04.898 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:43:04.898 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:04.898 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:04.908 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:43:04.918 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:43:04.918 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:43:05.098 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 19:43:05.098 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:43:05.138 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:05.138 -07 000000626 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:43:05.148 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:43:05.148 -07 000000569 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:05.148 -07 000000569 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 19:43:05.148 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.123 mm/sec
17-03-17 19:43:06.098 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:06.098 -07 000000431 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:43:06.108 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:06.108 -07 000000569 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:06.128 -07 000000569 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:43:06.128 -07 000000569 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:43:06.128 -07 000000569 INF: Y Motor: Moved to 73.1763 after 1436 ms (table move)
17-03-17 19:43:06.128 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173642 mm (DAC = 37932)
17-03-17 19:43:06.128 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:06.128 -07 000000561 INF: FPGA: Recv ZSGSRD 36324
17-03-17 19:43:06.138 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:43:06.138 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:06.138 -07 000000382 INF: FPGA: Recv ZSGSRD 36313
17-03-17 19:43:06.148 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:06.148 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:06.148 -07 000000429 INF: FPGA: Recv ZSGSRD 36318
17-03-17 19:43:06.158 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:06.158 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:06.158 -07 000000618 INF: FPGA: Recv ZSGSRD 36319
17-03-17 19:43:06.168 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:06.168 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:06.168 -07 000000561 INF: FPGA: Recv ZSGSRD 36325
17-03-17 19:43:06.178 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:06.178 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:06.178 -07 000000382 INF: FPGA: Recv ZSGSRD 36327
17-03-17 19:43:06.188 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:06.188 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:06.188 -07 000000501 INF: FPGA: Recv ZSGSRD 36320
17-03-17 19:43:06.198 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:06.198 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:06.198 -07 000000462 INF: FPGA: Recv ZSGSRD 36319
17-03-17 19:43:06.208 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:06.208 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:06.208 -07 000000438 INF: FPGA: Recv ZSGSRD 36314
17-03-17 19:43:06.218 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:06.218 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:06.218 -07 000000382 INF: FPGA: Recv ZSGSRD 36315
17-03-17 19:43:06.228 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:06.228 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:06.228 -07 000000569 INF: FPGA: Recv ZPIEZORD 32558
17-03-17 19:43:06.238 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:06.238 -07 000000476 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.788 V. Piezo Error = -8.3 V.
17-03-17 19:43:06.238 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36319 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36319 (-172.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36313 (-172.7 uncal um), Max = 36327 (-172.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:43:06.238 -07 000000476 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36319, posNoise = 8, negNoise = 6
17-03-17 19:43:06.238 -07 000000476 INF: Z Motor: After move to -0.173642, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:06.238 -07 000000476 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-17 19:43:06.238 -07 000000476 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:43:06.288 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 19:43:06.288 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:43:06.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:06.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:06.288 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:06.288 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:06.288 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:43:06.288 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:06.288 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:06.288 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:43:06.298 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:43:06.298 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:43:06.308 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:43:06.308 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:43:06.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:43:06.358 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:43:06.558 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:43:06.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:43:06.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:43:06.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 19:43:06.598 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:43:06.598 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 19:43:06.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 19:43:06.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 19:43:06.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:06.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:43:06.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 19:43:06.698 -07 000000501 INF: Autofocus start
17-03-17 19:43:06.698 -07 000000501 INF: MeasureProfile start
17-03-17 19:43:06.698 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:06.698 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:06.708 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:43:06.708 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:43:06.708 -07 000000501 INF: MeasureProfile done
17-03-17 19:43:06.708 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:43:06.708 -07 000000501 INF: Autofocus finished
17-03-17 19:43:06.708 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:43:06.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:43:06.778 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.014009,
17-03-17 19:43:06.908 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:43:06.908 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:43:06.908 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.173644312787751. ----------
17-03-17 19:43:06.908 -07 000000610 INF: Cycle	29	Tile	17	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:43:06.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36447, sync = True, waitForSettling = True)
17-03-17 19:43:06.918 -07 000000610 INF: Z Motor: Moving to -0.166844 mm, started at -0.173644 mm, distance = 6.80 um
17-03-17 19:43:06.918 -07 000000610 INF: FPGA: Xmit ZDACW 36447\n [Z Motor]
17-03-17 19:43:06.918 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:43:06.928 -07 000000610 INF: FPGA: 'ZDACW 36447' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:06.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:06.928 -07 000000501 INF: FPGA: Recv ZDACR 36447
17-03-17 19:43:06.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:06.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:43:07.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:07.088 -07 000000462 INF: FPGA: Recv ZSGSRD 35256
17-03-17 19:43:07.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:07.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:07.118 -07 000000438 INF: FPGA: Recv ZSGSRD 35256
17-03-17 19:43:07.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:43:07.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:07.128 -07 000000626 INF: FPGA: Recv ZSGSRD 35261
17-03-17 19:43:07.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:07.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:07.158 -07 000000541 INF: FPGA: Recv ZSGSRD 35262
17-03-17 19:43:07.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:43:07.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:07.168 -07 000000569 INF: FPGA: Recv ZSGSRD 35262
17-03-17 19:43:07.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:07.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:07.188 -07 000000501 INF: FPGA: Recv ZSGSRD 35265
17-03-17 19:43:07.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:43:07.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:07.198 -07 000000501 INF: FPGA: Recv ZSGSRD 35258
17-03-17 19:43:07.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:07.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:07.208 -07 000000551 INF: FPGA: Recv ZSGSRD 35267
17-03-17 19:43:07.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:07.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:07.218 -07 000000593 INF: FPGA: Recv ZSGSRD 35267
17-03-17 19:43:07.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:07.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:07.228 -07 000000431 INF: FPGA: Recv ZSGSRD 35259
17-03-17 19:43:07.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:07.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:07.238 -07 000000569 INF: FPGA: Recv ZPIEZORD 31140
17-03-17 19:43:07.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:07.248 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.561 V. Piezo Error = -9.1 V.
17-03-17 19:43:07.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35261 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35262 (-166.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35256 (-165.9 uncal um), Max = 35267 (-166.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:43:07.248 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35261, posNoise = 6, negNoise = 5
17-03-17 19:43:07.248 -07 000000610 INF: Z Motor: After move to -0.166844, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:07.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 331 ms)
17-03-17 19:43:07.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:07.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:07.248 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:07.248 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:07.248 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:43:07.248 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:43:07.248 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:43:07.248 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:07.248 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:43:07.248 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:43:07.248 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:07.248 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:43:07.258 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:43:07.258 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:43:07.258 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:43:07.258 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:43:07.268 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:43:07.268 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:43:07.268 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:43:07.268 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:43:07.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 36623 150\n [Camera]
17-03-17 19:43:07.468 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:43:07.868 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:43:07.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:43:07.878 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:07.878 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:07.878 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:43:07.878 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:43:07.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:43:07.878 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:07.878 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:07.878 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:43:08.068 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36623 789
17-03-17 19:43:08.218 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:43:08.248 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:43:08.248 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:43:08.248 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:08.258 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:43:08.258 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:43:08.258 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:08.258 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:08.258 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:43:08.258 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:08.268 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:43:08.408 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:43:08.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:43:08.408 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:08.408 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:08.408 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:43:08.408 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:43:08.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:43:08.418 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:08.418 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:08.418 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:43:08.598 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:43:08.598 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:43:08.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 36623 150' command took 2 ms to send, 1328 ms to get response, and 1332 ms overall
17-03-17 19:43:08.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:43:08.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166847496341768. ------
17-03-17 19:43:08.728 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:08.728 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17327 mm
17-03-17 19:43:08.728 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:43:08.728 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:43:08.728 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37851, sync = True, waitForSettling = False)
17-03-17 19:43:08.728 -07 000000431 INF: Z Motor: Moving to -0.173271 mm, started at -0.166847 mm, distance = -6.42 um
17-03-17 19:43:08.728 -07 000000551 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 19:43:08.728 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:08.738 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:43:08.738 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:08.738 -07 000000429 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:43:08.748 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:08.748 -07 000000551 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:08.748 -07 000000551 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:43:08.748 -07 000000551 INF: Y Motor: Moving 1354 steps-33
17-03-17 19:43:08.748 -07 000000431 INF: FPGA: Xmit ZDACW 37851\n [Z Motor]
17-03-17 19:43:08.748 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:43:08.758 -07 000000431 INF: FPGA: 'ZDACW 37851' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:43:08.758 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:43:08.768 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:43:08.778 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:08.778 -07 000000462 INF: FPGA: Recv ZDACR 37851
17-03-17 19:43:08.788 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:43:08.788 -07 000000431 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 19:43:08.808 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:43:08.808 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:43:08.808 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:08.808 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:43:08.808 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:43:08.808 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:08.818 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:08.818 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:43:08.818 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:43:08.818 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:43:08.958 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:43:08.958 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:43:09.138 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 19:43:09.138 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:43:09.168 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:09.168 -07 000000382 INF: FPGA: Recv YRDPOS 151568
17-03-17 19:43:09.178 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:43:09.178 -07 000000551 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:09.178 -07 000000551 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:43:09.178 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec
17-03-17 19:43:10.128 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:10.128 -07 000000424 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:43:10.138 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:10.138 -07 000000551 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:10.148 -07 000000551 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:43:10.148 -07 000000551 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:43:10.148 -07 000000551 INF: Y Motor: Moved to 74.0083 after 1417 ms (table move)
17-03-17 19:43:10.148 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173271 mm (DAC = 37851)
17-03-17 19:43:10.148 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:10.158 -07 000000476 INF: FPGA: Recv ZSGSRD 36262
17-03-17 19:43:10.158 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 9 ms to get response, and 9 ms overall
17-03-17 19:43:10.158 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:10.168 -07 000000569 INF: FPGA: Recv ZSGSRD 36264
17-03-17 19:43:10.168 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 19:43:10.168 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:10.168 -07 000000438 INF: FPGA: Recv ZSGSRD 36261
17-03-17 19:43:10.178 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:43:10.178 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:10.178 -07 000000431 INF: FPGA: Recv ZSGSRD 36257
17-03-17 19:43:10.188 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:10.188 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:10.188 -07 000000541 INF: FPGA: Recv ZSGSRD 36263
17-03-17 19:43:10.198 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:10.198 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:10.198 -07 000000569 INF: FPGA: Recv ZSGSRD 36266
17-03-17 19:43:10.208 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:10.208 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:10.208 -07 000000438 INF: FPGA: Recv ZSGSRD 36267
17-03-17 19:43:10.218 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:10.218 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:10.218 -07 000000429 INF: FPGA: Recv ZSGSRD 36261
17-03-17 19:43:10.228 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:10.228 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:10.228 -07 000000476 INF: FPGA: Recv ZSGSRD 36260
17-03-17 19:43:10.238 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:10.238 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:10.238 -07 000000569 INF: FPGA: Recv ZSGSRD 36258
17-03-17 19:43:10.248 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:10.248 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:10.248 -07 000000438 INF: FPGA: Recv ZPIEZORD 32477
17-03-17 19:43:10.258 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:10.258 -07 000000561 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.776 V. Piezo Error = -8.4 V.
17-03-17 19:43:10.258 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36262 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36262 (-172.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36257 (-172.4 uncal um), Max = 36267 (-172.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:43:10.258 -07 000000561 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36262, posNoise = 5, negNoise = 5
17-03-17 19:43:10.258 -07 000000561 INF: Z Motor: After move to -0.173271, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:10.258 -07 000000561 INF: Z Motor: Settle wait time = 1420 ms, measure time = 101 ms (allowed 150 ms), total time = 1521 ms
17-03-17 19:43:10.258 -07 000000561 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 19:43:10.308 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1574 ms
17-03-17 19:43:10.308 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:43:10.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:10.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:10.308 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:10.308 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:10.308 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:43:10.308 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:10.308 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:43:10.308 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:43:10.318 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:43:10.318 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:43:10.318 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:43:10.318 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:43:10.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:43:10.368 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:43:10.568 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:43:10.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:43:10.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:43:10.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:43:10.608 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:43:10.608 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 19:43:10.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:43:10.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:43:10.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:10.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:43:10.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:43:10.708 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:10.708 -07 000000618 INF: Autofocus start
17-03-17 19:43:10.708 -07 000000618 INF: MeasureProfile start
17-03-17 19:43:10.708 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:10.718 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:43:10.718 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:43:10.718 -07 000000618 INF: MeasureProfile done
17-03-17 19:43:10.718 -07 000000618 INF: X=-32  Z correction [um]=-0.2344
17-03-17 19:43:10.718 -07 000000618 INF: Autofocus finished
17-03-17 19:43:10.918 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:43:10.918 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:43:10.918 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.173278132695671. ----------
17-03-17 19:43:10.918 -07 000000610 INF: Cycle	29	Tile	18	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:43:10.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36312, sync = True, waitForSettling = True)
17-03-17 19:43:10.928 -07 000000610 INF: Z Motor: Moving to -0.166226 mm, started at -0.173278 mm, distance = 7.05 um
17-03-17 19:43:10.928 -07 000000610 INF: FPGA: Xmit ZDACW 36312\n [Z Motor]
17-03-17 19:43:10.928 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:43:10.938 -07 000000610 INF: FPGA: 'ZDACW 36312' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:43:10.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:10.938 -07 000000462 INF: FPGA: Recv ZDACR 36312
17-03-17 19:43:10.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:10.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:43:11.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:11.098 -07 000000626 INF: FPGA: Recv ZSGSRD 35168
17-03-17 19:43:11.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:11.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:11.108 -07 000000569 INF: FPGA: Recv ZSGSRD 35169
17-03-17 19:43:11.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:11.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:11.118 -07 000000438 INF: FPGA: Recv ZSGSRD 35165
17-03-17 19:43:11.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:11.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:11.128 -07 000000551 INF: FPGA: Recv ZSGSRD 35162
17-03-17 19:43:11.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:11.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:11.138 -07 000000462 INF: FPGA: Recv ZSGSRD 35175
17-03-17 19:43:11.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:11.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:11.148 -07 000000569 INF: FPGA: Recv ZSGSRD 35169
17-03-17 19:43:11.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:11.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:11.158 -07 000000438 INF: FPGA: Recv ZSGSRD 35167
17-03-17 19:43:11.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:11.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:11.168 -07 000000561 INF: FPGA: Recv ZSGSRD 35163
17-03-17 19:43:11.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:11.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:11.178 -07 000000429 INF: FPGA: Recv ZSGSRD 35167
17-03-17 19:43:11.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:11.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:11.188 -07 000000626 INF: FPGA: Recv ZSGSRD 35169
17-03-17 19:43:11.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:11.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:11.198 -07 000000438 INF: FPGA: Recv ZPIEZORD 31025
17-03-17 19:43:11.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:11.208 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.541 V. Piezo Error = -9.1 V.
17-03-17 19:43:11.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35167 (-165.4 uncal um), Error = 0.8 uncal um, Median = 35168 (-165.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35162 (-165.3 uncal um), Max = 35175 (-165.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:43:11.208 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35167, posNoise = 8, negNoise = 5
17-03-17 19:43:11.208 -07 000000610 INF: Z Motor: After move to -0.166226, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:11.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:43:11.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:11.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:11.208 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:11.208 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:11.208 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:43:11.208 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:11.208 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:43:11.208 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:43:11.208 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:11.208 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:43:11.208 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:43:11.208 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:43:11.218 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:43:11.218 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:43:11.218 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:43:11.218 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:43:11.228 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:43:11.228 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:43:11.228 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:43:11.228 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:43:11.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 36489 150\n [Camera]
17-03-17 19:43:11.428 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:43:11.708 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:43:11.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:43:11.838 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:43:11.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:43:11.838 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:11.838 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:43:11.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:43:11.838 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:11.848 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:11.848 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:43:11.848 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:11.848 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:43:12.028 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36489 789
17-03-17 19:43:12.148 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.000345,
17-03-17 19:43:12.178 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:43:12.228 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:43:12.228 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:43:12.228 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:12.228 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:43:12.228 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:43:12.228 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:12.228 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:12.228 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:43:12.228 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:12.238 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:43:12.378 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:43:12.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:43:12.378 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:12.378 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:43:12.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:43:12.378 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:12.388 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:12.388 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:43:12.388 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:12.388 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:43:12.568 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:43:12.568 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:43:12.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 36489 150' command took 2 ms to send, 1323 ms to get response, and 1333 ms overall
17-03-17 19:43:12.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:43:12.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.166243620400443. ------
17-03-17 19:43:12.568 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:12.568 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17257 mm
17-03-17 19:43:12.568 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:43:12.688 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:12.688 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-17 19:43:12.688 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:43:12.688 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:43:12.688 -07 000000541 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 19:43:12.688 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37698, sync = True, waitForSettling = False)
17-03-17 19:43:12.688 -07 000000424 INF: Z Motor: Moving to -0.172570 mm, started at -0.166244 mm, distance = -6.33 um
17-03-17 19:43:12.698 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:12.698 -07 000000551 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:43:12.708 -07 000000424 INF: FPGA: Xmit ZDACW 37698\n [Z Motor]
17-03-17 19:43:12.708 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:43:12.708 -07 000000541 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:12.708 -07 000000541 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:43:12.708 -07 000000541 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:43:12.708 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:43:12.718 -07 000000424 INF: FPGA: 'ZDACW 37698' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:43:12.718 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:12.718 -07 000000431 INF: FPGA: Recv ZDACR 37698
17-03-17 19:43:12.728 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:43:12.728 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:12.728 -07 000000424 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 19:43:12.768 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:43:12.768 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:43:12.768 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:12.768 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:43:12.768 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:43:12.768 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:12.778 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:12.778 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:12.778 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:43:12.778 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:43:12.888 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:43:12.888 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:43:13.098 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:43:13.098 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:43:13.118 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:13.128 -07 000000569 INF: FPGA: Recv YRDPOS 153256
17-03-17 19:43:13.128 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:43:13.128 -07 000000541 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:13.128 -07 000000541 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 19:43:13.128 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-17 19:43:14.078 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:14.078 -07 000000438 INF: FPGA: Recv YRDPOS 153256
17-03-17 19:43:14.088 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:14.088 -07 000000541 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:14.098 -07 000000541 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:43:14.098 -07 000000541 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:43:14.098 -07 000000541 INF: Y Motor: Moved to 74.8320 after 1409 ms (table move)
17-03-17 19:43:14.098 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172570 mm (DAC = 37698)
17-03-17 19:43:14.098 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:14.108 -07 000000626 INF: FPGA: Recv ZSGSRD 36158
17-03-17 19:43:14.118 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:14.118 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:14.118 -07 000000593 INF: FPGA: Recv ZSGSRD 36153
17-03-17 19:43:14.128 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:14.128 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:14.128 -07 000000429 INF: FPGA: Recv ZSGSRD 36154
17-03-17 19:43:14.138 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:14.138 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:14.138 -07 000000462 INF: FPGA: Recv ZSGSRD 36150
17-03-17 19:43:14.148 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:14.148 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:14.148 -07 000000501 INF: FPGA: Recv ZSGSRD 36145
17-03-17 19:43:14.158 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:14.158 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:14.158 -07 000000424 INF: FPGA: Recv ZSGSRD 36155
17-03-17 19:43:14.168 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:14.168 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:14.168 -07 000000551 INF: FPGA: Recv ZSGSRD 36162
17-03-17 19:43:14.178 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:14.178 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:14.178 -07 000000569 INF: FPGA: Recv ZSGSRD 36159
17-03-17 19:43:14.188 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:14.188 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:14.188 -07 000000462 INF: FPGA: Recv ZSGSRD 36154
17-03-17 19:43:14.198 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:14.198 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:14.198 -07 000000618 INF: FPGA: Recv ZSGSRD 36150
17-03-17 19:43:14.208 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:14.208 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:14.208 -07 000000593 INF: FPGA: Recv ZPIEZORD 32363
17-03-17 19:43:14.218 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:14.218 -07 000000382 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.752 V. Piezo Error = -8.4 V.
17-03-17 19:43:14.218 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36154 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36154 (-171.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36145 (-171.6 uncal um), Max = 36162 (-171.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:43:14.218 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36154, posNoise = 8, negNoise = 9
17-03-17 19:43:14.218 -07 000000382 INF: Z Motor: After move to -0.172570, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:14.218 -07 000000382 INF: Z Motor: Settle wait time = 1413 ms, measure time = 111 ms (allowed 150 ms), total time = 1524 ms
17-03-17 19:43:14.218 -07 000000382 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 19:43:14.258 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1682 ms
17-03-17 19:43:14.258 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:43:14.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:14.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:14.258 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:14.258 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:14.258 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:43:14.258 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:14.258 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:14.258 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:43:14.268 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:43:14.268 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:43:14.278 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:43:14.278 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:43:14.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:43:14.328 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:43:14.528 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:43:14.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:43:14.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:43:14.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:43:14.568 -07 000000438 INF: FPGA: Recv @CAMSNAP 281
17-03-17 19:43:14.568 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:43:14.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 286 ms overall
17-03-17 19:43:14.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:43:14.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:14.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:43:14.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:43:14.668 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:14.668 -07 000000482 INF: Autofocus start
17-03-17 19:43:14.668 -07 000000482 INF: MeasureProfile start
17-03-17 19:43:14.668 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:14.678 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:43:14.678 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:43:14.678 -07 000000482 INF: MeasureProfile done
17-03-17 19:43:14.678 -07 000000482 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:43:14.678 -07 000000482 INF: Autofocus finished
17-03-17 19:43:14.878 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:43:14.878 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:43:14.878 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.172584317784361. ----------
17-03-17 19:43:14.878 -07 000000610 INF: Cycle	29	Tile	19	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:43:14.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36231, sync = True, waitForSettling = True)
17-03-17 19:43:14.888 -07 000000610 INF: Z Motor: Moving to -0.165855 mm, started at -0.172584 mm, distance = 6.73 um
17-03-17 19:43:14.888 -07 000000610 INF: FPGA: Xmit ZDACW 36231\n [Z Motor]
17-03-17 19:43:14.888 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:43:14.898 -07 000000610 INF: FPGA: 'ZDACW 36231' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:43:14.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:14.898 -07 000000569 INF: FPGA: Recv ZDACR 36231
17-03-17 19:43:14.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:14.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:43:15.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:15.058 -07 000000626 INF: FPGA: Recv ZSGSRD 35111
17-03-17 19:43:15.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:15.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:15.068 -07 000000501 INF: FPGA: Recv ZSGSRD 35107
17-03-17 19:43:15.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:15.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:15.078 -07 000000541 INF: FPGA: Recv ZSGSRD 35108
17-03-17 19:43:15.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:15.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:15.088 -07 000000462 INF: FPGA: Recv ZSGSRD 35107
17-03-17 19:43:15.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:15.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:15.098 -07 000000382 INF: FPGA: Recv ZSGSRD 35107
17-03-17 19:43:15.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:15.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:15.108 -07 000000561 INF: FPGA: Recv ZSGSRD 35108
17-03-17 19:43:15.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:15.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:15.118 -07 000000431 INF: FPGA: Recv ZSGSRD 35112
17-03-17 19:43:15.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:15.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:15.128 -07 000000569 INF: FPGA: Recv ZSGSRD 35113
17-03-17 19:43:15.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:15.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:15.138 -07 000000438 INF: FPGA: Recv ZSGSRD 35109
17-03-17 19:43:15.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:15.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:15.148 -07 000000501 INF: FPGA: Recv ZSGSRD 35104
17-03-17 19:43:15.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:15.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:15.158 -07 000000618 INF: FPGA: Recv ZPIEZORD 30964
17-03-17 19:43:15.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:15.168 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.528 V. Piezo Error = -9.1 V.
17-03-17 19:43:15.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35109 (-165.0 uncal um), Error = 0.8 uncal um, Median = 35108 (-165.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35104 (-165.0 uncal um), Max = 35113 (-165.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:43:15.168 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35109, posNoise = 4, negNoise = 5
17-03-17 19:43:15.168 -07 000000610 INF: Z Motor: After move to -0.165855, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:15.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:43:15.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:15.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:15.168 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:15.168 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:43:15.168 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:15.168 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:43:15.168 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:43:15.168 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:15.168 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:43:15.168 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:43:15.168 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:43:15.168 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:43:15.178 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:43:15.178 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:43:15.178 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:43:15.178 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:43:15.178 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:43:15.178 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:43:15.188 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:43:15.188 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:43:15.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 36407 150\n [Camera]
17-03-17 19:43:15.388 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:43:15.798 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 19:43:15.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 19:43:15.798 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:15.798 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 19:43:15.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 19:43:15.798 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:15.808 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:15.808 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:43:15.808 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:15.808 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:43:15.988 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36407 789
17-03-17 19:43:16.138 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:43:16.178 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:43:16.178 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:43:16.178 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:16.178 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:43:16.178 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:43:16.188 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:16.188 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:16.188 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:16.188 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:43:16.188 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:43:16.328 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:43:16.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:43:16.328 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:16.338 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:16.338 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:43:16.338 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:43:16.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:43:16.338 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:16.338 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:16.338 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:43:16.518 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:43:16.528 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:43:16.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 36407 150' command took 2 ms to send, 1330 ms to get response, and 1336 ms overall
17-03-17 19:43:16.708 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:43:16.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:43:16.728 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:43:16.728 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:43:16.728 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:16.728 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 19:43:16.728 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:43:16.728 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:16.738 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:16.738 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:43:16.738 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:43:16.738 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:43:16.738 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:43:16.778 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 19:43:16.778 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:43:16.828 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 19:43:16.828 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 19:43:16.828 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:43:16.828 -07 000000482 INF: FPGA: Recv EMCUR 
17-03-17 19:43:16.838 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:43:16.838 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 19:43:17.338 -07 000000541 INF: FPGA: Recv EMIN
17-03-17 19:43:17.338 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 19:43:17.338 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 19:43:17.338 -07 000000593 INF: FPGA: Recv EMCUR 
17-03-17 19:43:17.348 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:43:17.348 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:43:17.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.16587101609622. ------
17-03-17 19:43:17.348 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:17.348 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14040 mm
17-03-17 19:43:17.348 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:43:17.348 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:43:17.348 -07 000000424 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-17 19:43:17.348 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30670, sync = True, waitForSettling = False)
17-03-17 19:43:17.348 -07 000000462 INF: Z Motor: Moving to -0.140398 mm, started at -0.165871 mm, distance = 25.47 um
17-03-17 19:43:17.348 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:17.358 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:43:17.358 -07 000000462 INF: FPGA: Xmit ZDACW 30670\n [Z Motor]
17-03-17 19:43:17.358 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:43:17.368 -07 000000462 INF: FPGA: 'ZDACW 30670' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:43:17.368 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:17.368 -07 000000593 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:43:17.378 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:43:17.378 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:43:17.378 -07 000000424 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:17.378 -07 000000424 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 19:43:17.378 -07 000000424 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:43:17.388 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:17.388 -07 000000382 INF: FPGA: Recv ZDACR 30670
17-03-17 19:43:17.398 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:43:17.398 -07 000000424 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:43:17.398 -07 000000462 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 19:43:17.508 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.003063,
17-03-17 19:43:17.578 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:43:17.578 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:43:19.018 -07 000000551 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 19:43:19.018 -07 000000424 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1643 ms overall
17-03-17 19:43:19.018 -07 000000424 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:43:19.018 -07 000000424 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23873 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 19:43:19.018 -07 000000424 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1643 ms, distance = 14.919 mm, average velocity = 9.081 mm/sec
17-03-17 19:43:21.718 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:43:21.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:43:21.868 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:21.868 -07 000000462 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:43:21.878 -07 000000424 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:21.878 -07 000000424 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:21.898 -07 000000424 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:43:21.898 -07 000000424 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 19:43:21.898 -07 000000424 INF: Y Motor: Moved to 59.9116 after 4551 ms
17-03-17 19:43:21.908 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140398 mm (DAC = 30670)
17-03-17 19:43:21.908 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:21.908 -07 000000431 INF: FPGA: Recv ZSGSRD 31148
17-03-17 19:43:21.918 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:43:21.918 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:21.918 -07 000000569 INF: FPGA: Recv ZSGSRD 31145
17-03-17 19:43:21.928 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:21.928 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:21.928 -07 000000561 INF: FPGA: Recv ZSGSRD 31146
17-03-17 19:43:21.938 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:21.938 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:21.938 -07 000000626 INF: FPGA: Recv ZSGSRD 31142
17-03-17 19:43:21.948 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:21.948 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:21.948 -07 000000462 INF: FPGA: Recv ZSGSRD 31148
17-03-17 19:43:21.958 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:21.958 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:21.958 -07 000000593 INF: FPGA: Recv ZSGSRD 31144
17-03-17 19:43:21.968 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:21.968 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:21.968 -07 000000561 INF: FPGA: Recv ZSGSRD 31144
17-03-17 19:43:21.978 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:21.978 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:21.978 -07 000000482 INF: FPGA: Recv ZSGSRD 31143
17-03-17 19:43:21.988 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:21.988 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:21.988 -07 000000541 INF: FPGA: Recv ZSGSRD 31141
17-03-17 19:43:21.998 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:21.998 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:21.998 -07 000000382 INF: FPGA: Recv ZSGSRD 31140
17-03-17 19:43:22.008 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:22.008 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:22.008 -07 000000551 INF: FPGA: Recv ZPIEZORD 26791
17-03-17 19:43:22.018 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:22.018 -07 000000618 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.680 V. Piezo Error = -9.6 V.
17-03-17 19:43:22.018 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.4 um, Read 10 ADC samples: Avg = 31144 (-139.6 uncal um), Error = 0.8 uncal um, Median = 31144 (-139.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 31140 (-139.6 uncal um), Max = 31148 (-139.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:43:22.018 -07 000000618 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31144, posNoise = 4, negNoise = 4
17-03-17 19:43:22.018 -07 000000618 INF: Z Motor: After move to -0.140398, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:22.018 -07 000000618 INF: Z Motor: Settle wait time = 4554 ms, measure time = 109 ms (allowed 150 ms), total time = 4663 ms
17-03-17 19:43:22.018 -07 000000618 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 19:43:22.068 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4715 ms
17-03-17 19:43:22.068 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:43:22.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:22.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:22.068 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:22.068 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:22.068 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:43:22.068 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:22.078 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:22.078 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:43:22.098 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 21 ms.
17-03-17 19:43:22.098 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:43:22.098 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:43:22.098 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:43:22.108 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:43:22.108 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 40 ms.
17-03-17 19:43:22.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:43:22.158 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:43:22.358 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:43:22.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:43:22.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:43:22.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1162196864, 0x0, 559484976) start.
17-03-17 19:43:22.398 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:43:22.398 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 19:43:22.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 19:43:22.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1162196864, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:43:22.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:22.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:43:22.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:43:22.598 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:22.598 -07 000000626 INF: Image SNR check: start
17-03-17 19:43:22.598 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:22.608 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:43:22.608 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:43:22.608 -07 000000626 INF: Image SNR check: pass  [peak (Max-Min)=63.71]
17-03-17 19:43:22.608 -07 000000626 INF: Autofocus start
17-03-17 19:43:22.608 -07 000000626 INF: MeasureProfile start
17-03-17 19:43:22.628 -07 000000626 INF: MeasureProfile done
17-03-17 19:43:22.628 -07 000000626 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:43:22.628 -07 000000626 INF: Autofocus finished
17-03-17 19:43:22.808 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:43:22.808 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:43:22.808 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.140399014954138. ----------
17-03-17 19:43:22.818 -07 000000610 INF: Cycle	29	Tile	1	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:43:22.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29165, sync = True, waitForSettling = True)
17-03-17 19:43:22.818 -07 000000610 INF: Z Motor: Moving to -0.133509 mm, started at -0.140399 mm, distance = 6.89 um
17-03-17 19:43:22.818 -07 000000610 INF: FPGA: Xmit ZDACW 29165\n [Z Motor]
17-03-17 19:43:22.818 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:43:22.828 -07 000000610 INF: FPGA: 'ZDACW 29165' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:43:22.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:22.828 -07 000000501 INF: FPGA: Recv ZDACR 29165
17-03-17 19:43:22.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:22.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:43:22.868 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.027603,
17-03-17 19:43:22.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:22.988 -07 000000541 INF: FPGA: Recv ZSGSRD 30069
17-03-17 19:43:22.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:22.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:22.998 -07 000000429 INF: FPGA: Recv ZSGSRD 30066
17-03-17 19:43:23.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:23.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:23.008 -07 000000569 INF: FPGA: Recv ZSGSRD 30067
17-03-17 19:43:23.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:23.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:23.018 -07 000000482 INF: FPGA: Recv ZSGSRD 30077
17-03-17 19:43:23.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:23.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:23.028 -07 000000551 INF: FPGA: Recv ZSGSRD 30073
17-03-17 19:43:23.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:23.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:23.038 -07 000000438 INF: FPGA: Recv ZSGSRD 30071
17-03-17 19:43:23.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:23.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:23.048 -07 000000462 INF: FPGA: Recv ZSGSRD 30072
17-03-17 19:43:23.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:23.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:23.058 -07 000000482 INF: FPGA: Recv ZSGSRD 30073
17-03-17 19:43:23.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:23.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:23.068 -07 000000541 INF: FPGA: Recv ZSGSRD 30070
17-03-17 19:43:23.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:23.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:23.078 -07 000000429 INF: FPGA: Recv ZSGSRD 30064
17-03-17 19:43:23.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:23.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:23.088 -07 000000569 INF: FPGA: Recv ZPIEZORD 25674
17-03-17 19:43:23.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:23.098 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.450 V. Piezo Error = -9.7 V.
17-03-17 19:43:23.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30070 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30070 (-132.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30064 (-132.7 uncal um), Max = 30077 (-132.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:43:23.098 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30070, posNoise = 7, negNoise = 6
17-03-17 19:43:23.098 -07 000000610 INF: Z Motor: After move to -0.133509, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:23.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:43:23.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:23.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:23.098 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:43:23.098 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:23.098 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:23.098 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:23.098 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:43:23.098 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:43:23.098 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:23.098 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:43:23.098 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:43:23.098 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:43:23.098 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:43:23.098 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:43:23.108 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:43:23.108 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:43:23.118 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 19:43:23.118 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:43:23.118 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:43:23.118 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:43:23.128 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:43:23.128 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 19:43:23.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 29342 150\n [Camera]
17-03-17 19:43:23.328 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:43:23.738 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:43:23.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:43:23.738 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:23.738 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:23.738 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:43:23.738 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:43:23.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:43:23.738 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:23.738 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:23.738 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:43:23.928 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29342 789
17-03-17 19:43:24.078 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:43:24.118 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:43:24.118 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:43:24.118 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:43:24.118 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:24.118 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:43:24.118 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:24.128 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:43:24.128 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:43:24.128 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:43:24.128 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:43:24.278 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:43:24.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:43:24.278 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:24.278 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:24.278 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:43:24.278 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:43:24.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:43:24.278 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:24.278 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:24.278 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:43:24.468 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:43:24.468 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:43:24.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 29342 150' command took 2 ms to send, 1324 ms to get response, and 1335 ms overall
17-03-17 19:43:24.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:43:24.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.133499411113887. ------
17-03-17 19:43:24.468 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:24.468 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13992 mm
17-03-17 19:43:24.468 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:43:24.478 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30566, sync = True, waitForSettling = False)
17-03-17 19:43:24.478 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:24.478 -07 000000618 INF: Z Motor: Moving to -0.139922 mm, started at -0.133499 mm, distance = -6.42 um
17-03-17 19:43:24.478 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:43:24.478 -07 000000618 INF: FPGA: Xmit ZDACW 30566\n [Z Motor]
17-03-17 19:43:24.478 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:43:24.478 -07 000000424 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 19:43:24.478 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:43:24.488 -07 000000618 INF: FPGA: 'ZDACW 30566' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:43:24.488 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:24.598 -07 000000551 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:43:24.608 -07 000000424 INF: FPGA: 'YRDPOS' command took 116 ms to send, 0 ms to get response, and 126 ms overall
17-03-17 19:43:24.608 -07 000000424 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:24.608 -07 000000424 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:43:24.608 -07 000000424 INF: Y Motor: Moving 1330 steps2
17-03-17 19:43:24.608 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:43:24.618 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:24.618 -07 000000438 INF: FPGA: Recv ZDACR 30566
17-03-17 19:43:24.628 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:43:24.628 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-17 19:43:24.628 -07 000000618 INF: Z Motor: MoveAbsStepped took 147 ms (did NOT wait for settling yet))
17-03-17 19:43:24.668 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:43:24.668 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:43:24.668 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:24.668 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:43:24.668 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:43:24.668 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:24.668 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:24.668 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:43:24.668 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:43:24.678 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:43:24.808 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:43:24.808 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 330 ms overall
17-03-17 19:43:24.998 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 19:43:24.998 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:43:25.028 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:25.028 -07 000000482 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:43:25.038 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:43:25.038 -07 000000424 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:25.038 -07 000000424 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:43:25.038 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.093 mm/sec
17-03-17 19:43:25.988 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:25.988 -07 000000551 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:43:25.998 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:25.998 -07 000000424 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:26.018 -07 000000424 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:43:26.018 -07 000000424 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:43:26.018 -07 000000424 INF: Y Motor: Moved to 60.7334 after 1538 ms (table move)
17-03-17 19:43:26.018 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139922 mm (DAC = 30566)
17-03-17 19:43:26.018 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:26.018 -07 000000438 INF: FPGA: Recv ZSGSRD 31065
17-03-17 19:43:26.028 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:43:26.028 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:26.028 -07 000000561 INF: FPGA: Recv ZSGSRD 31063
17-03-17 19:43:26.038 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:26.038 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:26.038 -07 000000541 INF: FPGA: Recv ZSGSRD 31067
17-03-17 19:43:26.048 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:26.048 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:26.048 -07 000000551 INF: FPGA: Recv ZSGSRD 31074
17-03-17 19:43:26.058 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:26.058 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:26.058 -07 000000424 INF: FPGA: Recv ZSGSRD 31077
17-03-17 19:43:26.068 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:26.068 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:26.068 -07 000000501 INF: FPGA: Recv ZSGSRD 31067
17-03-17 19:43:26.078 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:26.078 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:26.078 -07 000000618 INF: FPGA: Recv ZSGSRD 31071
17-03-17 19:43:26.088 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:26.088 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:26.088 -07 000000431 INF: FPGA: Recv ZSGSRD 31078
17-03-17 19:43:26.098 -07 000000626 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:26.098 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:26.098 -07 000000382 INF: FPGA: Recv ZSGSRD 31074
17-03-17 19:43:26.108 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:26.108 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:26.108 -07 000000476 INF: FPGA: Recv ZSGSRD 31062
17-03-17 19:43:26.118 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:26.118 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:26.118 -07 000000438 INF: FPGA: Recv ZPIEZORD 26997
17-03-17 19:43:26.128 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:26.128 -07 000000626 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.664 V. Piezo Error = -9.0 V.
17-03-17 19:43:26.128 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31070 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31069 (-139.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31062 (-139.1 uncal um), Max = 31078 (-139.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:43:26.128 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31070, posNoise = 8, negNoise = 8
17-03-17 19:43:26.128 -07 000000626 INF: Z Motor: After move to -0.139922, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:26.128 -07 000000626 INF: Z Motor: Settle wait time = 1543 ms, measure time = 104 ms (allowed 150 ms), total time = 1647 ms
17-03-17 19:43:26.128 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:43:26.178 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1700 ms
17-03-17 19:43:26.178 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:43:26.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:26.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:26.178 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:26.178 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:43:26.178 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:26.178 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:26.188 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:43:26.188 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:43:26.188 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:43:26.188 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:43:26.188 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:43:26.198 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:43:26.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:43:26.238 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:43:26.438 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:43:26.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:43:26.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:43:26.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:43:26.478 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:43:26.478 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:43:26.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:43:26.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:43:26.568 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:26.568 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:43:26.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:43:26.678 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:26.678 -07 000000424 INF: Autofocus start
17-03-17 19:43:26.678 -07 000000424 INF: MeasureProfile start
17-03-17 19:43:26.678 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:26.688 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:43:26.688 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:43:26.688 -07 000000424 INF: MeasureProfile done
17-03-17 19:43:26.688 -07 000000424 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:43:26.688 -07 000000424 INF: Autofocus finished
17-03-17 19:43:26.718 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:43:26.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:43:26.888 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:43:26.888 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:43:26.888 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.139923623255648. ----------
17-03-17 19:43:26.888 -07 000000610 INF: Cycle	29	Tile	2	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:43:26.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29090, sync = True, waitForSettling = True)
17-03-17 19:43:26.888 -07 000000610 INF: Z Motor: Moving to -0.133165 mm, started at -0.139924 mm, distance = 6.76 um
17-03-17 19:43:26.898 -07 000000610 INF: FPGA: Xmit ZDACW 29090\n [Z Motor]
17-03-17 19:43:26.898 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:43:26.908 -07 000000610 INF: FPGA: 'ZDACW 29090' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:43:26.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:26.908 -07 000000501 INF: FPGA: Recv ZDACR 29090
17-03-17 19:43:26.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:26.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:43:27.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:27.068 -07 000000476 INF: FPGA: Recv ZSGSRD 30015
17-03-17 19:43:27.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:27.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:27.078 -07 000000482 INF: FPGA: Recv ZSGSRD 30018
17-03-17 19:43:27.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:27.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:27.088 -07 000000551 INF: FPGA: Recv ZSGSRD 30022
17-03-17 19:43:27.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:27.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:27.098 -07 000000626 INF: FPGA: Recv ZSGSRD 30018
17-03-17 19:43:27.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:27.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:27.108 -07 000000561 INF: FPGA: Recv ZSGSRD 30019
17-03-17 19:43:27.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:27.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:27.118 -07 000000462 INF: FPGA: Recv ZSGSRD 30020
17-03-17 19:43:27.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:27.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:27.128 -07 000000501 INF: FPGA: Recv ZSGSRD 30019
17-03-17 19:43:27.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:27.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:27.138 -07 000000618 INF: FPGA: Recv ZSGSRD 30015
17-03-17 19:43:27.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:27.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:27.148 -07 000000561 INF: FPGA: Recv ZSGSRD 30017
17-03-17 19:43:27.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:27.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:27.158 -07 000000431 INF: FPGA: Recv ZSGSRD 30019
17-03-17 19:43:27.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:27.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:27.168 -07 000000541 INF: FPGA: Recv ZPIEZORD 25579
17-03-17 19:43:27.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:27.178 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.439 V. Piezo Error = -9.7 V.
17-03-17 19:43:27.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30018 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30018 (-132.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30015 (-132.4 uncal um), Max = 30022 (-132.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:43:27.178 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30018, posNoise = 4, negNoise = 3
17-03-17 19:43:27.178 -07 000000610 INF: Z Motor: After move to -0.133165, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:27.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:43:27.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:27.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:27.178 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:27.178 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:43:27.178 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:27.178 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:27.178 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:43:27.178 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:43:27.178 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:43:27.178 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:43:27.178 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:43:27.178 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:43:27.188 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:43:27.188 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:43:27.188 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:43:27.188 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:43:27.198 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:43:27.198 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:43:27.198 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:43:27.198 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:43:27.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 29266 150\n [Camera]
17-03-17 19:43:27.408 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:43:27.808 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:43:27.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:43:27.808 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:27.808 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:43:27.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:43:27.808 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:27.808 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:27.808 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:43:27.818 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:27.818 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:43:27.998 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29266 790
17-03-17 19:43:28.148 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:43:28.208 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 19:43:28.208 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:43:28.208 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:28.208 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:43:28.208 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:43:28.208 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:28.218 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:28.218 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:43:28.218 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:28.228 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:43:28.228 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.02213,
17-03-17 19:43:28.348 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:43:28.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:43:28.348 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:28.348 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:43:28.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:43:28.348 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:28.358 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:28.358 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:43:28.358 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:28.358 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:43:28.538 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:43:28.538 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:43:28.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 29266 150' command took 2 ms to send, 1323 ms to get response, and 1333 ms overall
17-03-17 19:43:28.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:43:28.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.133165352082515. ------
17-03-17 19:43:28.538 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:28.538 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13996 mm
17-03-17 19:43:28.538 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:43:28.658 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:28.658 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 117 ms to get response, and 119 ms overall
17-03-17 19:43:28.658 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:43:28.658 -07 000000501 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 19:43:28.658 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30573, sync = True, waitForSettling = False)
17-03-17 19:43:28.658 -07 000000551 INF: Z Motor: Moving to -0.139954 mm, started at -0.133165 mm, distance = -6.79 um
17-03-17 19:43:28.668 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:43:28.688 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:28.688 -07 000000462 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:43:28.698 -07 000000551 INF: FPGA: Xmit ZDACW 30573\n [Z Motor]
17-03-17 19:43:28.698 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 19:43:28.698 -07 000000501 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:28.698 -07 000000501 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:43:28.698 -07 000000501 INF: Y Motor: Moving 1342 steps-19
17-03-17 19:43:28.698 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:43:28.708 -07 000000551 INF: FPGA: 'ZDACW 30573' command took 0 ms to send, 0 ms to get response, and 41 ms overall
17-03-17 19:43:28.718 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:43:28.728 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:28.728 -07 000000382 INF: FPGA: Recv ZDACR 30573
17-03-17 19:43:28.738 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:43:28.738 -07 000000551 INF: Z Motor: MoveAbsStepped took 71 ms (did NOT wait for settling yet))
17-03-17 19:43:28.738 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:43:28.738 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:43:28.738 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:28.738 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:43:28.738 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:43:28.738 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:28.738 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:28.748 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:28.748 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:43:28.748 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:43:28.868 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:43:28.868 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 208 ms overall
17-03-17 19:43:29.088 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 19:43:29.088 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:43:29.128 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:29.128 -07 000000593 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:43:29.138 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:43:29.138 -07 000000501 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:29.138 -07 000000501 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:43:29.138 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.130 mm/sec
17-03-17 19:43:30.088 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:30.088 -07 000000462 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:43:30.098 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:30.098 -07 000000501 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:30.118 -07 000000501 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:43:30.118 -07 000000501 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:43:30.118 -07 000000501 INF: Y Motor: Moved to 61.5645 after 1454 ms (table move)
17-03-17 19:43:30.118 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139954 mm (DAC = 30573)
17-03-17 19:43:30.118 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:30.118 -07 000000429 INF: FPGA: Recv ZSGSRD 31074
17-03-17 19:43:30.128 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:43:30.128 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:30.128 -07 000000569 INF: FPGA: Recv ZSGSRD 31069
17-03-17 19:43:30.138 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:30.138 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:30.138 -07 000000626 INF: FPGA: Recv ZSGSRD 31076
17-03-17 19:43:30.148 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:30.148 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:30.148 -07 000000561 INF: FPGA: Recv ZSGSRD 31078
17-03-17 19:43:30.158 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:30.158 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:30.158 -07 000000431 INF: FPGA: Recv ZSGSRD 31080
17-03-17 19:43:30.168 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:30.168 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:30.168 -07 000000482 INF: FPGA: Recv ZSGSRD 31066
17-03-17 19:43:30.178 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:30.178 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:30.178 -07 000000438 INF: FPGA: Recv ZSGSRD 31078
17-03-17 19:43:30.188 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:30.188 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:30.188 -07 000000462 INF: FPGA: Recv ZSGSRD 31074
17-03-17 19:43:30.198 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:30.198 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:30.198 -07 000000431 INF: FPGA: Recv ZSGSRD 31068
17-03-17 19:43:30.208 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:30.208 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:30.208 -07 000000482 INF: FPGA: Recv ZSGSRD 31072
17-03-17 19:43:30.218 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:30.218 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:30.218 -07 000000626 INF: FPGA: Recv ZPIEZORD 27028
17-03-17 19:43:30.228 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:30.228 -07 000000541 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.665 V. Piezo Error = -8.9 V.
17-03-17 19:43:30.228 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31074 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31074 (-139.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31066 (-139.1 uncal um), Max = 31080 (-139.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:43:30.228 -07 000000541 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31074, posNoise = 6, negNoise = 8
17-03-17 19:43:30.228 -07 000000541 INF: Z Motor: After move to -0.139954, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:30.228 -07 000000541 INF: Z Motor: Settle wait time = 1457 ms, measure time = 105 ms (allowed 150 ms), total time = 1562 ms
17-03-17 19:43:30.228 -07 000000541 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:43:30.278 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1731 ms
17-03-17 19:43:30.278 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:43:30.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:30.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:30.278 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:30.278 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:30.278 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:43:30.278 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:30.278 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:30.278 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:43:30.288 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:43:30.288 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:43:30.298 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 19:43:30.298 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:43:30.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:43:30.348 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:43:30.548 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:43:30.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:43:30.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:43:30.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:43:30.578 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:43:30.588 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:43:30.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:43:30.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:43:30.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:30.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:43:30.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:43:30.688 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:30.688 -07 000000462 INF: Autofocus start
17-03-17 19:43:30.688 -07 000000462 INF: MeasureProfile start
17-03-17 19:43:30.688 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:30.698 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:43:30.698 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:43:30.698 -07 000000462 INF: MeasureProfile done
17-03-17 19:43:30.698 -07 000000462 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:43:30.698 -07 000000462 INF: Autofocus finished
17-03-17 19:43:30.898 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:43:30.898 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 19:43:30.908 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.139949320104215. ----------
17-03-17 19:43:30.908 -07 000000610 INF: Cycle	29	Tile	3	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:43:30.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29081, sync = True, waitForSettling = True)
17-03-17 19:43:30.908 -07 000000610 INF: Z Motor: Moving to -0.133124 mm, started at -0.139949 mm, distance = 6.83 um
17-03-17 19:43:30.908 -07 000000610 INF: FPGA: Xmit ZDACW 29081\n [Z Motor]
17-03-17 19:43:30.908 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:43:30.918 -07 000000610 INF: FPGA: 'ZDACW 29081' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:43:30.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:30.918 -07 000000593 INF: FPGA: Recv ZDACR 29081
17-03-17 19:43:30.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:30.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:43:31.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:31.078 -07 000000431 INF: FPGA: Recv ZSGSRD 30010
17-03-17 19:43:31.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:31.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:31.088 -07 000000482 INF: FPGA: Recv ZSGSRD 30011
17-03-17 19:43:31.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:31.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:31.098 -07 000000561 INF: FPGA: Recv ZSGSRD 30017
17-03-17 19:43:31.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:31.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:31.108 -07 000000626 INF: FPGA: Recv ZSGSRD 30009
17-03-17 19:43:31.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:31.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:31.118 -07 000000569 INF: FPGA: Recv ZSGSRD 30017
17-03-17 19:43:31.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:31.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:31.128 -07 000000593 INF: FPGA: Recv ZSGSRD 30011
17-03-17 19:43:31.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:31.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:31.138 -07 000000541 INF: FPGA: Recv ZSGSRD 30016
17-03-17 19:43:31.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:31.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:31.148 -07 000000429 INF: FPGA: Recv ZSGSRD 30015
17-03-17 19:43:31.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:31.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:31.158 -07 000000569 INF: FPGA: Recv ZSGSRD 30010
17-03-17 19:43:31.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:31.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:31.168 -07 000000382 INF: FPGA: Recv ZSGSRD 30008
17-03-17 19:43:31.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:31.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:31.178 -07 000000431 INF: FPGA: Recv ZPIEZORD 25651
17-03-17 19:43:31.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:31.188 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.437 V. Piezo Error = -9.6 V.
17-03-17 19:43:31.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30012 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30011 (-132.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30008 (-132.3 uncal um), Max = 30017 (-132.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:43:31.188 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30012, posNoise = 5, negNoise = 4
17-03-17 19:43:31.188 -07 000000610 INF: Z Motor: After move to -0.133124, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:31.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:43:31.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:31.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:31.188 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:31.188 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:31.188 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:43:31.188 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:31.188 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:43:31.188 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:43:31.188 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:31.188 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:43:31.188 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:43:31.188 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:43:31.188 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:43:31.188 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:43:31.198 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:43:31.198 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:43:31.198 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:43:31.198 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:43:31.198 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:43:31.198 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:43:31.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 29257 150\n [Camera]
17-03-17 19:43:31.408 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:43:31.718 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:43:31.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:43:31.808 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:43:31.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:43:31.808 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:31.818 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:43:31.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:43:31.818 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:31.818 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:31.818 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:43:31.818 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:31.818 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:43:32.008 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29257 789
17-03-17 19:43:32.158 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:43:32.198 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:43:32.198 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:43:32.198 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:32.198 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:43:32.198 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:43:32.198 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:32.198 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:32.198 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:32.198 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:43:32.208 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:43:32.348 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:43:32.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:43:32.348 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:32.348 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:43:32.348 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:32.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:43:32.348 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:43:32.348 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:32.348 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:32.348 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 19:43:32.538 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:43:32.538 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:43:32.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 29257 150' command took 2 ms to send, 1327 ms to get response, and 1333 ms overall
17-03-17 19:43:32.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:43:32.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.133126806809665. ------
17-03-17 19:43:32.548 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:32.548 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13948 mm
17-03-17 19:43:32.548 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:43:32.548 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:43:32.548 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30470, sync = True, waitForSettling = False)
17-03-17 19:43:32.548 -07 000000438 INF: Z Motor: Moving to -0.139483 mm, started at -0.133127 mm, distance = -6.36 um
17-03-17 19:43:32.548 -07 000000561 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 19:43:32.548 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:32.558 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:43:32.558 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:32.558 -07 000000382 INF: FPGA: Recv YRDPOS 126085
17-03-17 19:43:32.568 -07 000000438 INF: FPGA: Xmit ZDACW 30470\n [Z Motor]
17-03-17 19:43:32.568 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:43:32.568 -07 000000561 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:32.568 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:43:32.568 -07 000000561 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:43:32.568 -07 000000561 INF: Y Motor: Moving 1340 steps-17
17-03-17 19:43:32.578 -07 000000438 INF: FPGA: 'ZDACW 30470' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:43:32.578 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:43:32.588 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:43:32.598 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:32.598 -07 000000482 INF: FPGA: Recv ZDACR 30470
17-03-17 19:43:32.608 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:43:32.608 -07 000000438 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 19:43:32.758 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 19:43:32.758 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:43:32.758 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:32.758 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 19:43:32.758 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:43:32.758 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:32.758 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:32.758 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 19:43:32.758 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:32.768 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:43:32.778 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:43:32.778 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 19:43:32.958 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 19:43:32.958 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:43:32.998 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:32.998 -07 000000382 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:43:33.008 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:43:33.008 -07 000000561 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:33.008 -07 000000561 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:43:33.008 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.127 mm/sec
17-03-17 19:43:33.588 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.99219,
17-03-17 19:43:33.958 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:33.958 -07 000000462 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:43:33.968 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:33.968 -07 000000561 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:33.988 -07 000000561 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:43:33.988 -07 000000561 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:43:33.988 -07 000000561 INF: Y Motor: Moved to 62.3960 after 1433 ms (table move)
17-03-17 19:43:33.988 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139483 mm (DAC = 30470)
17-03-17 19:43:33.988 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:33.988 -07 000000501 INF: FPGA: Recv ZSGSRD 31001
17-03-17 19:43:33.998 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:43:33.998 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:33.998 -07 000000561 INF: FPGA: Recv ZSGSRD 31000
17-03-17 19:43:34.008 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:34.008 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:34.008 -07 000000431 INF: FPGA: Recv ZSGSRD 31003
17-03-17 19:43:34.018 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:34.018 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:34.018 -07 000000569 INF: FPGA: Recv ZSGSRD 31008
17-03-17 19:43:34.028 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:34.028 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:34.028 -07 000000541 INF: FPGA: Recv ZSGSRD 31004
17-03-17 19:43:34.038 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:34.038 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:34.038 -07 000000382 INF: FPGA: Recv ZSGSRD 31004
17-03-17 19:43:34.048 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:34.048 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:34.048 -07 000000438 INF: FPGA: Recv ZSGSRD 31002
17-03-17 19:43:34.058 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:34.058 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:34.058 -07 000000569 INF: FPGA: Recv ZSGSRD 31001
17-03-17 19:43:34.068 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:34.078 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:34.078 -07 000000501 INF: FPGA: Recv ZSGSRD 31005
17-03-17 19:43:34.088 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:43:34.088 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:34.088 -07 000000462 INF: FPGA: Recv ZSGSRD 31013
17-03-17 19:43:34.098 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:34.108 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:34.108 -07 000000618 INF: FPGA: Recv ZPIEZORD 26962
17-03-17 19:43:34.118 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:43:34.118 -07 000000626 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.649 V. Piezo Error = -8.9 V.
17-03-17 19:43:34.118 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31004 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31004 (-138.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 31000 (-138.7 uncal um), Max = 31013 (-138.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:43:34.118 -07 000000626 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31004, posNoise = 9, negNoise = 4
17-03-17 19:43:34.118 -07 000000626 INF: Z Motor: After move to -0.139483, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:34.118 -07 000000626 INF: Z Motor: Settle wait time = 1437 ms, measure time = 126 ms (allowed 150 ms), total time = 1563 ms
17-03-17 19:43:34.118 -07 000000626 INF: Z Motor: Waiting extra 24 ms after reading position to reach expected total of 150 ms
17-03-17 19:43:34.148 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 19:43:34.148 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:43:34.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:34.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:34.148 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:34.148 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:34.148 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:43:34.148 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:34.148 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:34.148 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:43:34.158 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:43:34.158 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:43:34.168 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:43:34.168 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:43:34.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:43:34.218 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:43:34.418 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:43:34.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:43:34.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:43:34.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 19:43:34.458 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:43:34.458 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:43:34.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 19:43:34.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:43:34.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:34.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:43:34.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:43:34.558 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:34.558 -07 000000431 INF: Autofocus start
17-03-17 19:43:34.558 -07 000000431 INF: MeasureProfile start
17-03-17 19:43:34.558 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:34.568 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:43:34.568 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:43:34.568 -07 000000431 INF: MeasureProfile done
17-03-17 19:43:34.568 -07 000000431 INF: X=-48  Z correction [um]=-0.2370583
17-03-17 19:43:34.568 -07 000000431 INF: Autofocus finished
17-03-17 19:43:34.768 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:43:34.768 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:43:34.768 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.139499625254292. ----------
17-03-17 19:43:34.768 -07 000000610 INF: Cycle	29	Tile	4	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:43:34.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28931, sync = True, waitForSettling = True)
17-03-17 19:43:34.778 -07 000000610 INF: Z Motor: Moving to -0.132438 mm, started at -0.139500 mm, distance = 7.06 um
17-03-17 19:43:34.778 -07 000000610 INF: FPGA: Xmit ZDACW 28931\n [Z Motor]
17-03-17 19:43:34.778 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:43:34.788 -07 000000610 INF: FPGA: 'ZDACW 28931' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:43:34.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:34.788 -07 000000424 INF: FPGA: Recv ZDACR 28931
17-03-17 19:43:34.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:34.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:43:34.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:34.948 -07 000000382 INF: FPGA: Recv ZSGSRD 29904
17-03-17 19:43:34.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:34.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:34.958 -07 000000501 INF: FPGA: Recv ZSGSRD 29901
17-03-17 19:43:34.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:34.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:34.968 -07 000000551 INF: FPGA: Recv ZSGSRD 29906
17-03-17 19:43:34.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:34.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:34.978 -07 000000569 INF: FPGA: Recv ZSGSRD 29907
17-03-17 19:43:34.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:34.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:34.988 -07 000000438 INF: FPGA: Recv ZSGSRD 29908
17-03-17 19:43:34.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:34.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:34.998 -07 000000476 INF: FPGA: Recv ZSGSRD 29903
17-03-17 19:43:35.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:35.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:35.008 -07 000000541 INF: FPGA: Recv ZSGSRD 29912
17-03-17 19:43:35.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:35.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:35.018 -07 000000569 INF: FPGA: Recv ZSGSRD 29910
17-03-17 19:43:35.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:35.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:35.028 -07 000000482 INF: FPGA: Recv ZSGSRD 29904
17-03-17 19:43:35.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:35.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:35.038 -07 000000462 INF: FPGA: Recv ZSGSRD 29902
17-03-17 19:43:35.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:35.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:35.048 -07 000000541 INF: FPGA: Recv ZPIEZORD 25555
17-03-17 19:43:35.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:35.058 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.415 V. Piezo Error = -9.6 V.
17-03-17 19:43:35.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29906 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29905 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29901 (-131.6 uncal um), Max = 29912 (-131.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:43:35.058 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29906, posNoise = 6, negNoise = 5
17-03-17 19:43:35.058 -07 000000610 INF: Z Motor: After move to -0.132438, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:35.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:43:35.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:35.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:35.058 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:35.058 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:43:35.058 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:35.058 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:43:35.058 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:43:35.058 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:35.058 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:43:35.058 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:43:35.058 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:35.058 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:43:35.068 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:43:35.068 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:43:35.068 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:43:35.068 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:43:35.078 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:43:35.078 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:43:35.078 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:43:35.078 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:43:35.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 29108 150\n [Camera]
17-03-17 19:43:35.278 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:43:35.678 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:43:35.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:43:35.688 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:35.688 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:35.688 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:43:35.688 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:43:35.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:43:35.688 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:35.688 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:35.688 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:43:35.878 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29108 789
17-03-17 19:43:36.028 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:43:36.068 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:43:36.068 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:43:36.068 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:36.068 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:36.068 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:43:36.068 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:43:36.068 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:43:36.068 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:36.078 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:36.078 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:43:36.218 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:43:36.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:43:36.218 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:36.218 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:36.218 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:43:36.218 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:43:36.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:43:36.228 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:36.228 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:36.228 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:43:36.408 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:43:36.408 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:43:36.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 29108 150' command took 2 ms to send, 1328 ms to get response, and 1332 ms overall
17-03-17 19:43:36.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:43:36.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.132445840322638. ------
17-03-17 19:43:36.418 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13876 mm
17-03-17 19:43:36.418 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:43:36.418 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:36.548 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:36.548 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 125 ms overall
17-03-17 19:43:36.548 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:43:36.548 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:43:36.548 -07 000000429 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 19:43:36.548 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30313, sync = True, waitForSettling = False)
17-03-17 19:43:36.548 -07 000000438 INF: Z Motor: Moving to -0.138764 mm, started at -0.132446 mm, distance = -6.32 um
17-03-17 19:43:36.558 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:36.558 -07 000000593 INF: FPGA: Recv YRDPOS 127788
17-03-17 19:43:36.568 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:43:36.568 -07 000000438 INF: FPGA: Xmit ZDACW 30313\n [Z Motor]
17-03-17 19:43:36.568 -07 000000429 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:36.568 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:43:36.568 -07 000000429 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:43:36.568 -07 000000429 INF: Y Motor: Moving 1338 steps-14
17-03-17 19:43:36.578 -07 000000438 INF: FPGA: 'ZDACW 30313' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:43:36.578 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:36.578 -07 000000501 INF: FPGA: Recv ZDACR 30313
17-03-17 19:43:36.588 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:43:36.588 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:36.588 -07 000000438 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 19:43:36.618 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:43:36.618 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:43:36.618 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:36.618 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 19:43:36.618 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:43:36.618 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:36.618 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:36.628 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:43:36.628 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:43:36.628 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 19:43:36.718 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:43:36.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:43:36.748 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:43:36.748 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:43:36.958 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:43:36.958 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:43:36.998 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:36.998 -07 000000593 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:43:37.008 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:43:37.008 -07 000000429 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:37.008 -07 000000429 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:43:37.008 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.123 mm/sec
17-03-17 19:43:37.958 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:37.958 -07 000000462 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:43:37.968 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:37.968 -07 000000429 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:37.988 -07 000000429 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:43:37.988 -07 000000429 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:43:37.988 -07 000000429 INF: Y Motor: Moved to 63.2251 after 1439 ms (table move)
17-03-17 19:43:37.988 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138764 mm (DAC = 30313)
17-03-17 19:43:37.988 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:37.988 -07 000000593 INF: FPGA: Recv ZSGSRD 30886
17-03-17 19:43:37.998 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:43:37.998 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:37.998 -07 000000431 INF: FPGA: Recv ZSGSRD 30887
17-03-17 19:43:38.008 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:38.008 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:38.008 -07 000000482 INF: FPGA: Recv ZSGSRD 30887
17-03-17 19:43:38.018 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:38.018 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:38.018 -07 000000476 INF: FPGA: Recv ZSGSRD 30895
17-03-17 19:43:38.028 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:38.028 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:38.028 -07 000000626 INF: FPGA: Recv ZSGSRD 30887
17-03-17 19:43:38.038 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:38.038 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:38.038 -07 000000551 INF: FPGA: Recv ZSGSRD 30898
17-03-17 19:43:38.048 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:38.048 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:38.048 -07 000000618 INF: FPGA: Recv ZSGSRD 30894
17-03-17 19:43:38.058 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:38.058 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:38.058 -07 000000438 INF: FPGA: Recv ZSGSRD 30885
17-03-17 19:43:38.068 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:38.068 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:38.068 -07 000000551 INF: FPGA: Recv ZSGSRD 30886
17-03-17 19:43:38.078 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:38.078 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:38.078 -07 000000424 INF: FPGA: Recv ZSGSRD 30886
17-03-17 19:43:38.088 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:38.088 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:38.088 -07 000000593 INF: FPGA: Recv ZPIEZORD 26845
17-03-17 19:43:38.098 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:38.098 -07 000000541 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.625 V. Piezo Error = -8.9 V.
17-03-17 19:43:38.098 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30889 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30887 (-137.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30885 (-137.9 uncal um), Max = 30898 (-138.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:43:38.098 -07 000000541 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30889, posNoise = 9, negNoise = 4
17-03-17 19:43:38.098 -07 000000541 INF: Z Motor: After move to -0.138764, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:38.098 -07 000000541 INF: Z Motor: Settle wait time = 1442 ms, measure time = 105 ms (allowed 150 ms), total time = 1547 ms
17-03-17 19:43:38.098 -07 000000541 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:43:38.148 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1725 ms
17-03-17 19:43:38.148 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:43:38.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:38.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:38.148 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:38.148 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:43:38.148 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:38.148 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:38.148 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:38.148 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:43:38.158 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:43:38.158 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:43:38.168 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:43:38.168 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:43:38.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:43:38.218 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:43:38.418 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:43:38.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:43:38.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:43:38.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:43:38.458 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:43:38.458 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 19:43:38.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 19:43:38.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 19:43:38.538 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:38.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:43:38.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 19:43:38.558 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:38.558 -07 000000551 INF: Autofocus start
17-03-17 19:43:38.558 -07 000000551 INF: MeasureProfile start
17-03-17 19:43:38.558 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:38.568 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:43:38.568 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:43:38.568 -07 000000551 INF: MeasureProfile done
17-03-17 19:43:38.568 -07 000000551 INF: X=48  Z correction [um]=0.2069503
17-03-17 19:43:38.568 -07 000000551 INF: Autofocus finished
17-03-17 19:43:38.768 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:43:38.768 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:43:38.768 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.138760840857989. ----------
17-03-17 19:43:38.768 -07 000000610 INF: Cycle	29	Tile	5	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:43:38.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28870, sync = True, waitForSettling = True)
17-03-17 19:43:38.778 -07 000000610 INF: Z Motor: Moving to -0.132158 mm, started at -0.138761 mm, distance = 6.60 um
17-03-17 19:43:38.778 -07 000000610 INF: FPGA: Xmit ZDACW 28870\n [Z Motor]
17-03-17 19:43:38.778 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:43:38.788 -07 000000610 INF: FPGA: 'ZDACW 28870' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:43:38.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:38.788 -07 000000382 INF: FPGA: Recv ZDACR 28870
17-03-17 19:43:38.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:38.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:43:38.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:38.948 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.99219,
17-03-17 19:43:38.948 -07 000000431 INF: FPGA: Recv ZSGSRD 29865
17-03-17 19:43:38.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:38.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:38.978 -07 000000569 INF: FPGA: Recv ZSGSRD 29858
17-03-17 19:43:38.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:43:38.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:38.998 -07 000000541 INF: FPGA: Recv ZSGSRD 29864
17-03-17 19:43:39.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:43:39.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:39.008 -07 000000561 INF: FPGA: Recv ZSGSRD 29863
17-03-17 19:43:39.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:39.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:39.028 -07 000000626 INF: FPGA: Recv ZSGSRD 29870
17-03-17 19:43:39.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:43:39.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:39.038 -07 000000618 INF: FPGA: Recv ZSGSRD 29856
17-03-17 19:43:39.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:39.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:39.048 -07 000000541 INF: FPGA: Recv ZSGSRD 29861
17-03-17 19:43:39.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:39.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:39.058 -07 000000462 INF: FPGA: Recv ZSGSRD 29863
17-03-17 19:43:39.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:39.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:39.068 -07 000000626 INF: FPGA: Recv ZSGSRD 29860
17-03-17 19:43:39.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:39.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:39.078 -07 000000618 INF: FPGA: Recv ZSGSRD 29867
17-03-17 19:43:39.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:39.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:39.088 -07 000000424 INF: FPGA: Recv ZPIEZORD 25532
17-03-17 19:43:39.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:39.098 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.405 V. Piezo Error = -9.5 V.
17-03-17 19:43:39.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29863 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29863 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29856 (-131.3 uncal um), Max = 29870 (-131.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:43:39.098 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29863, posNoise = 7, negNoise = 7
17-03-17 19:43:39.098 -07 000000610 INF: Z Motor: After move to -0.132158, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:39.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 319 ms)
17-03-17 19:43:39.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:39.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:39.098 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:39.098 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:39.098 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:43:39.098 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:39.098 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:43:39.098 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:43:39.098 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:39.098 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:43:39.098 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:43:39.098 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:43:39.108 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:43:39.108 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:43:39.108 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:43:39.108 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:43:39.118 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 19:43:39.118 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:43:39.118 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:43:39.118 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:43:39.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 29047 150\n [Camera]
17-03-17 19:43:39.318 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:43:39.728 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:43:39.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:43:39.728 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:39.728 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:43:39.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:43:39.728 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:39.728 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:39.728 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:43:39.728 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:39.728 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:43:39.918 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29047 789
17-03-17 19:43:40.068 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:43:40.108 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 19:43:40.108 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 19:43:40.108 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:40.108 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:43:40.108 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:43:40.108 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:40.108 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:40.108 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:43:40.108 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:40.118 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:43:40.258 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:43:40.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:43:40.258 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:40.258 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:43:40.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:43:40.268 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:40.268 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:40.268 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 19:43:40.268 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:40.268 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:43:40.448 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:43:40.448 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:43:40.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 29047 150' command took 2 ms to send, 1328 ms to get response, and 1332 ms overall
17-03-17 19:43:40.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:43:40.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.132169599200542. ------
17-03-17 19:43:40.458 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:40.458 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13864 mm
17-03-17 19:43:40.458 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:43:40.458 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30286, sync = True, waitForSettling = False)
17-03-17 19:43:40.458 -07 000000482 INF: Z Motor: Moving to -0.138640 mm, started at -0.132170 mm, distance = -6.47 um
17-03-17 19:43:40.458 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:43:40.458 -07 000000541 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 19:43:40.458 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:40.468 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:43:40.468 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:43:40.478 -07 000000482 INF: FPGA: Xmit ZDACW 30286\n [Z Motor]
17-03-17 19:43:40.478 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:43:40.488 -07 000000482 INF: FPGA: 'ZDACW 30286' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:43:40.488 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:40.488 -07 000000501 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:43:40.498 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 19:43:40.498 -07 000000541 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:40.498 -07 000000541 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:43:40.498 -07 000000541 INF: Y Motor: Moving 1340 steps-15
17-03-17 19:43:40.608 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:40.608 -07 000000429 INF: FPGA: Recv ZDACR 30286
17-03-17 19:43:40.618 -07 000000482 INF: FPGA: 'ZDACR' command took 116 ms to send, 0 ms to get response, and 129 ms overall
17-03-17 19:43:40.618 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:43:40.618 -07 000000482 INF: Z Motor: MoveAbsStepped took 152 ms (did NOT wait for settling yet))
17-03-17 19:43:40.658 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:43:40.658 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:43:40.658 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:40.658 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 19:43:40.658 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:43:40.658 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:40.668 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:40.668 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:43:40.668 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:40.668 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:43:40.668 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:43:40.668 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:43:40.988 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 19:43:40.988 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 19:43:41.028 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:41.028 -07 000000551 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:43:41.038 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:43:41.038 -07 000000541 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:41.038 -07 000000541 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 19:43:41.038 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.838 mm, average velocity = 2.192 mm/sec
17-03-17 19:43:41.718 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:43:41.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:43:41.988 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:41.988 -07 000000429 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:43:41.998 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:41.998 -07 000000541 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:42.008 -07 000000541 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:43:42.008 -07 000000541 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:43:42.008 -07 000000541 INF: Y Motor: Moved to 64.0576 after 1549 ms (table move)
17-03-17 19:43:42.018 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138640 mm (DAC = 30286)
17-03-17 19:43:42.018 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:42.018 -07 000000438 INF: FPGA: Recv ZSGSRD 30874
17-03-17 19:43:42.028 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:43:42.028 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:42.028 -07 000000626 INF: FPGA: Recv ZSGSRD 30869
17-03-17 19:43:42.038 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:42.038 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:42.038 -07 000000476 INF: FPGA: Recv ZSGSRD 30873
17-03-17 19:43:42.048 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:42.048 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:42.048 -07 000000593 INF: FPGA: Recv ZSGSRD 30876
17-03-17 19:43:42.058 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:42.058 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:42.058 -07 000000501 INF: FPGA: Recv ZSGSRD 30873
17-03-17 19:43:42.068 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:42.068 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:42.068 -07 000000626 INF: FPGA: Recv ZSGSRD 30876
17-03-17 19:43:42.078 -07 000000569 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:42.078 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:42.078 -07 000000438 INF: FPGA: Recv ZSGSRD 30866
17-03-17 19:43:42.088 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:42.088 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:42.088 -07 000000431 INF: FPGA: Recv ZSGSRD 30865
17-03-17 19:43:42.098 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:42.098 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:42.098 -07 000000618 INF: FPGA: Recv ZSGSRD 30870
17-03-17 19:43:42.108 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:42.108 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:42.108 -07 000000626 INF: FPGA: Recv ZSGSRD 30871
17-03-17 19:43:42.118 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:42.118 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:42.118 -07 000000438 INF: FPGA: Recv ZPIEZORD 26881
17-03-17 19:43:42.128 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:42.128 -07 000000569 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.621 V. Piezo Error = -8.8 V.
17-03-17 19:43:42.128 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30871 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30872 (-137.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30865 (-137.8 uncal um), Max = 30876 (-137.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:43:42.128 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30871, posNoise = 5, negNoise = 6
17-03-17 19:43:42.128 -07 000000569 INF: Z Motor: After move to -0.138640, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:42.128 -07 000000569 INF: Z Motor: Settle wait time = 1553 ms, measure time = 109 ms (allowed 150 ms), total time = 1662 ms
17-03-17 19:43:42.128 -07 000000569 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 19:43:42.178 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1715 ms
17-03-17 19:43:42.178 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:43:42.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:42.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:42.178 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:42.178 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:42.178 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:43:42.178 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:42.178 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:42.178 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:43:42.188 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:43:42.188 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:43:42.188 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:43:42.188 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:43:42.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:43:42.238 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:43:42.438 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:43:42.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:43:42.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:43:42.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:43:42.478 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:43:42.478 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:43:42.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:43:42.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:43:42.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:42.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:43:42.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:43:42.578 -07 000000618 INF: Autofocus start
17-03-17 19:43:42.578 -07 000000618 INF: MeasureProfile start
17-03-17 19:43:42.578 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:42.578 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:42.588 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:43:42.588 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:43:42.588 -07 000000618 INF: MeasureProfile done
17-03-17 19:43:42.588 -07 000000618 INF: X=32  Z correction [um]=0.1299841
17-03-17 19:43:42.588 -07 000000618 INF: Autofocus finished
17-03-17 19:43:42.788 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:43:42.788 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 19:43:42.788 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.138645205039438. ----------
17-03-17 19:43:42.788 -07 000000610 INF: Cycle	29	Tile	6	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:43:42.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28827, sync = True, waitForSettling = True)
17-03-17 19:43:42.798 -07 000000610 INF: Z Motor: Moving to -0.131962 mm, started at -0.138645 mm, distance = 6.68 um
17-03-17 19:43:42.798 -07 000000610 INF: FPGA: Xmit ZDACW 28827\n [Z Motor]
17-03-17 19:43:42.798 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:43:42.808 -07 000000610 INF: FPGA: 'ZDACW 28827' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:42.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:42.808 -07 000000569 INF: FPGA: Recv ZDACR 28827
17-03-17 19:43:42.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:42.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:43:42.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:42.968 -07 000000618 INF: FPGA: Recv ZSGSRD 29827
17-03-17 19:43:42.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:42.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:42.978 -07 000000476 INF: FPGA: Recv ZSGSRD 29834
17-03-17 19:43:42.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:42.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:42.988 -07 000000561 INF: FPGA: Recv ZSGSRD 29833
17-03-17 19:43:42.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:42.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:42.998 -07 000000482 INF: FPGA: Recv ZSGSRD 29828
17-03-17 19:43:43.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:43.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:43.008 -07 000000541 INF: FPGA: Recv ZSGSRD 29832
17-03-17 19:43:43.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:43.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:43.018 -07 000000382 INF: FPGA: Recv ZSGSRD 29830
17-03-17 19:43:43.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:43.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:43.028 -07 000000593 INF: FPGA: Recv ZSGSRD 29827
17-03-17 19:43:43.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:43.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:43.038 -07 000000429 INF: FPGA: Recv ZSGSRD 29827
17-03-17 19:43:43.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:43.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:43.048 -07 000000618 INF: FPGA: Recv ZSGSRD 29833
17-03-17 19:43:43.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:43.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:43.058 -07 000000382 INF: FPGA: Recv ZSGSRD 29838
17-03-17 19:43:43.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:43.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:43.068 -07 000000551 INF: FPGA: Recv ZPIEZORD 25510
17-03-17 19:43:43.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:43.078 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.399 V. Piezo Error = -9.5 V.
17-03-17 19:43:43.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29831 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29831 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29827 (-131.2 uncal um), Max = 29838 (-131.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:43:43.078 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29831, posNoise = 7, negNoise = 4
17-03-17 19:43:43.078 -07 000000610 INF: Z Motor: After move to -0.131962, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:43.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:43:43.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:43.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:43.078 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:43.078 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:43.078 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:43:43.078 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:43:43.078 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:43.078 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:43:43.078 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:43:43.078 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:43:43.078 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:43:43.078 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:43:43.088 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:43:43.088 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:43:43.088 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:43:43.088 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:43:43.098 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:43:43.098 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:43:43.098 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:43:43.098 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:43:43.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 29003 150\n [Camera]
17-03-17 19:43:43.298 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:43:43.708 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 19:43:43.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 19:43:43.708 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:43.708 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 19:43:43.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 19:43:43.708 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:43.708 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:43.708 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:43:43.718 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:43.718 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:43:43.898 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29003 789
17-03-17 19:43:44.048 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:43:44.098 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:43:44.098 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:43:44.098 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:44.098 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:43:44.098 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:43:44.098 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:44.108 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:44.108 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:43:44.108 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:44.118 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:43:44.238 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:43:44.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:43:44.238 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:43:44.238 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:44.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:43:44.248 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:44.248 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:44.248 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 19:43:44.248 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:44.248 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 19:43:44.348 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.975845,
17-03-17 19:43:44.428 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:43:44.428 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:43:44.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 29003 150' command took 2 ms to send, 1327 ms to get response, and 1334 ms overall
17-03-17 19:43:44.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:43:44.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.131964024412006. ------
17-03-17 19:43:44.438 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:44.438 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13854 mm
17-03-17 19:43:44.438 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:43:44.438 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:43:44.438 -07 000000593 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 19:43:44.438 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30265, sync = True, waitForSettling = False)
17-03-17 19:43:44.438 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:44.438 -07 000000431 INF: Z Motor: Moving to -0.138544 mm, started at -0.131964 mm, distance = -6.58 um
17-03-17 19:43:44.448 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:43:44.448 -07 000000431 INF: FPGA: Xmit ZDACW 30265\n [Z Motor]
17-03-17 19:43:44.448 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:43:44.458 -07 000000431 INF: FPGA: 'ZDACW 30265' command took 2 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:43:44.458 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:44.458 -07 000000438 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:43:44.468 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:43:44.468 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:43:44.468 -07 000000593 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:44.468 -07 000000593 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:43:44.468 -07 000000593 INF: Y Motor: Moving 1336 steps-10
17-03-17 19:43:44.478 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:44.478 -07 000000626 INF: FPGA: Recv ZDACR 30265
17-03-17 19:43:44.488 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:43:44.488 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:43:44.488 -07 000000431 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 19:43:44.648 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 19:43:44.648 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 19:43:44.648 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:43:44.648 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:44.648 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:43:44.648 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:44.658 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:44.658 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:44.658 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 19:43:44.658 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 19:43:44.668 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:43:44.668 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 19:43:44.858 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:43:44.858 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:43:44.898 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:44.898 -07 000000541 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:43:44.908 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:43:44.908 -07 000000593 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:44.908 -07 000000593 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:43:44.908 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.103 mm/sec
17-03-17 19:43:45.858 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:45.858 -07 000000382 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:43:45.868 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:45.868 -07 000000593 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:45.888 -07 000000593 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:43:45.888 -07 000000593 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:43:45.888 -07 000000593 INF: Y Motor: Moved to 64.8794 after 1446 ms (table move)
17-03-17 19:43:45.888 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138544 mm (DAC = 30265)
17-03-17 19:43:45.888 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:45.888 -07 000000424 INF: FPGA: Recv ZSGSRD 30868
17-03-17 19:43:45.898 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:43:45.898 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:45.898 -07 000000551 INF: FPGA: Recv ZSGSRD 30852
17-03-17 19:43:45.908 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:45.908 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:45.908 -07 000000569 INF: FPGA: Recv ZSGSRD 30849
17-03-17 19:43:45.918 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:45.918 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:45.918 -07 000000382 INF: FPGA: Recv ZSGSRD 30853
17-03-17 19:43:45.928 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:45.928 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:45.928 -07 000000561 INF: FPGA: Recv ZSGSRD 30856
17-03-17 19:43:45.938 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:45.938 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:45.938 -07 000000482 INF: FPGA: Recv ZSGSRD 30871
17-03-17 19:43:45.948 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:45.948 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:45.948 -07 000000501 INF: FPGA: Recv ZSGSRD 30857
17-03-17 19:43:45.958 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:45.958 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:45.958 -07 000000476 INF: FPGA: Recv ZSGSRD 30856
17-03-17 19:43:45.968 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:45.968 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:45.968 -07 000000541 INF: FPGA: Recv ZSGSRD 30853
17-03-17 19:43:45.978 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:45.978 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:45.978 -07 000000429 INF: FPGA: Recv ZSGSRD 30846
17-03-17 19:43:45.988 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:45.988 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:45.988 -07 000000424 INF: FPGA: Recv ZPIEZORD 26865
17-03-17 19:43:45.998 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:45.998 -07 000000618 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -8.8 V.
17-03-17 19:43:45.998 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30856 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30854 (-137.7 uncal um), StdDev = 8 (0.1 uncal um), Range = 25 (0.2 uncal um), Min = 30846 (-137.7 uncal um), Max = 30871 (-137.8 uncal um), Pos Noise = 15 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:43:45.998 -07 000000618 INF: Z Motor: ADC noise = 15, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30856, posNoise = 15, negNoise = 10
17-03-17 19:43:45.998 -07 000000618 INF: Z Motor: After move to -0.138544, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:45.998 -07 000000618 INF: Z Motor: Settle wait time = 1449 ms, measure time = 105 ms (allowed 150 ms), total time = 1554 ms
17-03-17 19:43:45.998 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:43:46.048 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 19:43:46.048 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:43:46.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:46.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:46.048 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:46.048 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:46.048 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:43:46.048 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:46.048 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:46.058 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:43:46.058 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:43:46.058 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:43:46.068 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:43:46.068 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:43:46.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:43:46.118 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:43:46.318 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:43:46.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:43:46.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:43:46.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 19:43:46.358 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:43:46.358 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 19:43:46.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 288 ms overall
17-03-17 19:43:46.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 19:43:46.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:46.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:43:46.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 19:43:46.458 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:46.458 -07 000000551 INF: Autofocus start
17-03-17 19:43:46.458 -07 000000551 INF: MeasureProfile start
17-03-17 19:43:46.458 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:46.468 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:43:46.468 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:43:46.468 -07 000000551 INF: MeasureProfile done
17-03-17 19:43:46.468 -07 000000551 INF: X=6  Z correction [um]=0.004914018
17-03-17 19:43:46.468 -07 000000551 INF: Autofocus finished
17-03-17 19:43:46.668 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:43:46.668 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:43:46.668 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.138548841857311. ----------
17-03-17 19:43:46.668 -07 000000610 INF: Cycle	29	Tile	7	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:43:46.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28778, sync = True, waitForSettling = True)
17-03-17 19:43:46.678 -07 000000610 INF: Z Motor: Moving to -0.131737 mm, started at -0.138549 mm, distance = 6.81 um
17-03-17 19:43:46.678 -07 000000610 INF: FPGA: Xmit ZDACW 28778\n [Z Motor]
17-03-17 19:43:46.678 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:43:46.688 -07 000000610 INF: FPGA: 'ZDACW 28778' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:43:46.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:46.688 -07 000000429 INF: FPGA: Recv ZDACR 28778
17-03-17 19:43:46.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:46.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:43:46.718 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:43:46.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:43:46.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:46.848 -07 000000593 INF: FPGA: Recv ZSGSRD 29791
17-03-17 19:43:46.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:46.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:46.858 -07 000000482 INF: FPGA: Recv ZSGSRD 29797
17-03-17 19:43:46.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:46.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:46.868 -07 000000462 INF: FPGA: Recv ZSGSRD 29798
17-03-17 19:43:46.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:46.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:46.878 -07 000000424 INF: FPGA: Recv ZSGSRD 29792
17-03-17 19:43:46.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:46.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:46.888 -07 000000382 INF: FPGA: Recv ZSGSRD 29801
17-03-17 19:43:46.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:46.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:46.898 -07 000000569 INF: FPGA: Recv ZSGSRD 29798
17-03-17 19:43:46.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:46.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:46.908 -07 000000541 INF: FPGA: Recv ZSGSRD 29789
17-03-17 19:43:46.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:46.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:46.918 -07 000000551 INF: FPGA: Recv ZSGSRD 29800
17-03-17 19:43:46.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:46.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:46.928 -07 000000482 INF: FPGA: Recv ZSGSRD 29796
17-03-17 19:43:46.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:46.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:46.938 -07 000000438 INF: FPGA: Recv ZSGSRD 29796
17-03-17 19:43:46.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:46.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:46.948 -07 000000431 INF: FPGA: Recv ZPIEZORD 25441
17-03-17 19:43:46.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:46.958 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.391 V. Piezo Error = -9.6 V.
17-03-17 19:43:46.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29796 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29796 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29789 (-130.9 uncal um), Max = 29801 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:43:46.958 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29796, posNoise = 5, negNoise = 7
17-03-17 19:43:46.958 -07 000000610 INF: Z Motor: After move to -0.131737, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:46.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:43:46.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:46.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:46.958 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:46.958 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:46.958 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:43:46.958 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:43:46.958 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:46.958 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:43:46.968 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:46.968 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:43:46.968 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:43:46.968 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:43:46.968 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:43:46.968 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:43:46.968 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:43:46.968 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:43:46.978 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:43:46.978 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:43:46.978 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:43:46.978 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:43:46.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 28955 150\n [Camera]
17-03-17 19:43:47.178 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:43:47.578 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:43:47.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:43:47.578 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:47.578 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:47.578 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:43:47.588 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:43:47.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:43:47.588 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:47.588 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:47.588 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:43:47.778 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28955 789
17-03-17 19:43:47.928 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:43:47.968 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:43:47.968 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:43:47.968 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:47.968 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:43:47.968 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:43:47.968 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:47.968 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:47.968 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:47.968 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:43:47.978 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:43:48.118 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:43:48.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:43:48.118 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:48.118 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:48.118 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:43:48.118 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:43:48.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:43:48.118 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:48.118 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:48.118 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:43:48.308 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:43:48.308 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:43:48.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 28955 150' command took 2 ms to send, 1327 ms to get response, and 1332 ms overall
17-03-17 19:43:48.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:43:48.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131739176987044. ------
17-03-17 19:43:48.438 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:48.438 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13841 mm
17-03-17 19:43:48.438 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:43:48.438 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:48.438 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30235, sync = True, waitForSettling = False)
17-03-17 19:43:48.438 -07 000000462 INF: Z Motor: Moving to -0.138407 mm, started at -0.131739 mm, distance = -6.67 um
17-03-17 19:43:48.438 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:43:48.438 -07 000000476 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 19:43:48.448 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:48.448 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:43:48.448 -07 000000618 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:43:48.458 -07 000000462 INF: FPGA: Xmit ZDACW 30235\n [Z Motor]
17-03-17 19:43:48.458 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:48.458 -07 000000476 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:48.458 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:43:48.458 -07 000000476 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:43:48.458 -07 000000476 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:43:48.468 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:43:48.468 -07 000000462 INF: FPGA: 'ZDACW 30235' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:43:48.478 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:43:48.488 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:48.488 -07 000000482 INF: FPGA: Recv ZDACR 30235
17-03-17 19:43:48.498 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:43:48.498 -07 000000462 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 19:43:48.508 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:43:48.508 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:43:48.508 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:48.508 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 19:43:48.508 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:43:48.508 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:48.518 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:48.518 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:43:48.518 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 19:43:48.518 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:43:48.668 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:43:48.668 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:43:48.848 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 19:43:48.848 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:43:48.888 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:48.888 -07 000000382 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:43:48.898 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:43:48.898 -07 000000476 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:48.898 -07 000000476 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:43:48.898 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.843 mm, average velocity = 2.140 mm/sec
17-03-17 19:43:49.708 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.99219,
17-03-17 19:43:49.848 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:49.848 -07 000000482 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:43:49.858 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:49.858 -07 000000476 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:49.878 -07 000000476 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:43:49.878 -07 000000476 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:43:49.878 -07 000000476 INF: Y Motor: Moved to 65.7148 after 1434 ms (table move)
17-03-17 19:43:49.878 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138407 mm (DAC = 30235)
17-03-17 19:43:49.878 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:49.888 -07 000000618 INF: FPGA: Recv ZSGSRD 30846
17-03-17 19:43:49.888 -07 000000551 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:43:49.888 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:49.888 -07 000000541 INF: FPGA: Recv ZSGSRD 30835
17-03-17 19:43:49.898 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:49.898 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:49.898 -07 000000424 INF: FPGA: Recv ZSGSRD 30832
17-03-17 19:43:49.908 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:49.908 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:49.908 -07 000000382 INF: FPGA: Recv ZSGSRD 30837
17-03-17 19:43:49.918 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:49.918 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:49.918 -07 000000618 INF: FPGA: Recv ZSGSRD 30844
17-03-17 19:43:49.928 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:49.928 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:49.928 -07 000000541 INF: FPGA: Recv ZSGSRD 30833
17-03-17 19:43:49.938 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:49.938 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:49.938 -07 000000424 INF: FPGA: Recv ZSGSRD 30835
17-03-17 19:43:49.948 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:49.948 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:49.948 -07 000000429 INF: FPGA: Recv ZSGSRD 30831
17-03-17 19:43:49.958 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:49.958 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:49.958 -07 000000618 INF: FPGA: Recv ZSGSRD 30833
17-03-17 19:43:49.968 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:49.968 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:49.968 -07 000000561 INF: FPGA: Recv ZSGSRD 30835
17-03-17 19:43:49.978 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:49.978 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:49.978 -07 000000626 INF: FPGA: Recv ZPIEZORD 26843
17-03-17 19:43:49.988 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:49.988 -07 000000551 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.614 V. Piezo Error = -8.8 V.
17-03-17 19:43:49.988 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30836 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30835 (-137.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30831 (-137.6 uncal um), Max = 30846 (-137.7 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:43:49.988 -07 000000551 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30836, posNoise = 10, negNoise = 5
17-03-17 19:43:49.988 -07 000000551 INF: Z Motor: After move to -0.138407, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:49.988 -07 000000551 INF: Z Motor: Settle wait time = 1437 ms, measure time = 105 ms (allowed 150 ms), total time = 1542 ms
17-03-17 19:43:49.988 -07 000000551 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:43:50.038 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 19:43:50.038 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:43:50.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:50.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:50.038 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:50.038 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:50.038 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:43:50.038 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:50.038 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:43:50.038 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:43:50.048 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:43:50.048 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:43:50.048 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:43:50.048 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:43:50.058 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:43:50.098 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:43:50.298 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:43:50.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:43:50.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:43:50.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:43:50.338 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:43:50.338 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:43:50.338 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 19:43:50.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:43:50.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:50.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:43:50.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:43:50.438 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:50.438 -07 000000438 INF: Autofocus start
17-03-17 19:43:50.438 -07 000000438 INF: MeasureProfile start
17-03-17 19:43:50.448 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:50.448 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:43:50.448 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:43:50.458 -07 000000438 INF: MeasureProfile done
17-03-17 19:43:50.458 -07 000000438 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:43:50.458 -07 000000438 INF: Autofocus finished
17-03-17 19:43:50.648 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:43:50.648 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:43:50.648 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.138420357614476. ----------
17-03-17 19:43:50.658 -07 000000610 INF: Cycle	29	Tile	8	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:43:50.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28730, sync = True, waitForSettling = True)
17-03-17 19:43:50.658 -07 000000610 INF: Z Motor: Moving to -0.131518 mm, started at -0.138420 mm, distance = 6.90 um
17-03-17 19:43:50.658 -07 000000610 INF: FPGA: Xmit ZDACW 28730\n [Z Motor]
17-03-17 19:43:50.658 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 19:43:50.668 -07 000000610 INF: FPGA: 'ZDACW 28730' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:43:50.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:50.668 -07 000000424 INF: FPGA: Recv ZDACR 28730
17-03-17 19:43:50.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:50.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:43:50.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:50.828 -07 000000476 INF: FPGA: Recv ZSGSRD 29762
17-03-17 19:43:50.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:50.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:50.838 -07 000000501 INF: FPGA: Recv ZSGSRD 29764
17-03-17 19:43:50.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:50.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:50.848 -07 000000462 INF: FPGA: Recv ZSGSRD 29766
17-03-17 19:43:50.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:50.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:50.858 -07 000000561 INF: FPGA: Recv ZSGSRD 29762
17-03-17 19:43:50.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:50.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:50.868 -07 000000431 INF: FPGA: Recv ZSGSRD 29764
17-03-17 19:43:50.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:50.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:50.878 -07 000000429 INF: FPGA: Recv ZSGSRD 29753
17-03-17 19:43:50.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:50.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:50.888 -07 000000618 INF: FPGA: Recv ZSGSRD 29770
17-03-17 19:43:50.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:50.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:50.898 -07 000000424 INF: FPGA: Recv ZSGSRD 29765
17-03-17 19:43:50.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:50.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:50.908 -07 000000476 INF: FPGA: Recv ZSGSRD 29763
17-03-17 19:43:50.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:50.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:50.918 -07 000000382 INF: FPGA: Recv ZSGSRD 29764
17-03-17 19:43:50.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:50.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:50.928 -07 000000462 INF: FPGA: Recv ZPIEZORD 25435
17-03-17 19:43:50.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:50.938 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.384 V. Piezo Error = -9.5 V.
17-03-17 19:43:50.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29763 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29764 (-130.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29753 (-130.7 uncal um), Max = 29770 (-130.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:43:50.938 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29763, posNoise = 7, negNoise = 10
17-03-17 19:43:50.938 -07 000000610 INF: Z Motor: After move to -0.131518, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:50.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:43:50.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:50.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:50.938 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:43:50.938 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:43:50.938 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:50.938 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:50.938 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:43:50.938 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:43:50.938 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:50.938 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:43:50.938 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:50.938 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:43:50.948 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:43:50.948 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:43:50.948 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:43:50.948 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:43:50.958 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:43:50.958 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:43:50.958 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:43:50.958 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:43:50.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 28906 150\n [Camera]
17-03-17 19:43:51.158 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:43:51.558 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:43:51.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:43:51.558 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:51.558 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:43:51.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:43:51.568 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:51.568 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:51.568 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:43:51.568 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:51.568 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:43:51.718 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:43:51.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:43:51.748 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28906 789
17-03-17 19:43:51.908 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:43:51.938 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:43:51.938 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:43:51.938 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:51.948 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:51.948 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:43:51.948 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:43:51.948 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:51.948 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:43:51.948 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:43:51.958 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:43:52.098 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:43:52.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:43:52.098 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:52.098 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:43:52.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:43:52.098 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:52.108 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:52.108 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:43:52.108 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:52.108 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:43:52.288 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:43:52.288 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:43:52.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 28906 150' command took 2 ms to send, 1325 ms to get response, and 1332 ms overall
17-03-17 19:43:52.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:43:52.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.131527177986366. ------
17-03-17 19:43:52.298 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:52.298 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13777 mm
17-03-17 19:43:52.298 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:43:52.408 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:52.408 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 115 ms overall
17-03-17 19:43:52.408 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:43:52.408 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:43:52.408 -07 000000438 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 19:43:52.408 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30095, sync = True, waitForSettling = False)
17-03-17 19:43:52.408 -07 000000569 INF: Z Motor: Moving to -0.137766 mm, started at -0.131527 mm, distance = -6.24 um
17-03-17 19:43:52.418 -07 000000569 INF: FPGA: Xmit ZDACW 30095\n [Z Motor]
17-03-17 19:43:52.418 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:43:52.428 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:52.428 -07 000000569 INF: FPGA: 'ZDACW 30095' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:43:52.428 -07 000000462 INF: FPGA: Recv YRDPOS 134585
17-03-17 19:43:52.438 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:43:52.438 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:52.438 -07 000000438 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:52.438 -07 000000382 INF: FPGA: Recv ZDACR 30095
17-03-17 19:43:52.438 -07 000000438 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:43:52.438 -07 000000438 INF: Y Motor: Moving 1340 steps-16
17-03-17 19:43:52.448 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:43:52.448 -07 000000569 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 19:43:52.448 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:43:52.508 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 19:43:52.508 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:43:52.508 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:52.508 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:43:52.508 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:43:52.508 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:52.508 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:52.508 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:52.508 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 19:43:52.518 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:43:52.608 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:43:52.608 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-17 19:43:52.818 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 19:43:52.818 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 19:43:52.858 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:52.858 -07 000000569 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:43:52.868 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:43:52.868 -07 000000438 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:52.868 -07 000000438 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:43:52.868 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.838 mm, average velocity = 2.187 mm/sec
17-03-17 19:43:53.818 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:53.818 -07 000000593 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:43:53.828 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:53.828 -07 000000438 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:53.848 -07 000000438 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:43:53.848 -07 000000438 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:43:53.848 -07 000000438 INF: Y Motor: Moved to 66.5400 after 1434 ms (table move)
17-03-17 19:43:53.848 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137766 mm (DAC = 30095)
17-03-17 19:43:53.848 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:53.848 -07 000000486 INF: FPGA: Recv ZSGSRD 30737
17-03-17 19:43:53.858 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:43:53.858 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:53.858 -07 000000593 INF: FPGA: Recv ZSGSRD 30739
17-03-17 19:43:53.868 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:53.868 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:53.868 -07 000000561 INF: FPGA: Recv ZSGSRD 30736
17-03-17 19:43:53.878 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:53.878 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:53.878 -07 000000424 INF: FPGA: Recv ZSGSRD 30728
17-03-17 19:43:53.888 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:53.888 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:53.888 -07 000000429 INF: FPGA: Recv ZSGSRD 30736
17-03-17 19:43:53.898 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:53.898 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:53.898 -07 000000486 INF: FPGA: Recv ZSGSRD 30738
17-03-17 19:43:53.908 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:53.908 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:53.908 -07 000000382 INF: FPGA: Recv ZSGSRD 30736
17-03-17 19:43:53.918 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:43:53.918 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:53.918 -07 000000431 INF: FPGA: Recv ZSGSRD 30726
17-03-17 19:43:53.928 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:53.928 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:53.928 -07 000000429 INF: FPGA: Recv ZSGSRD 30732
17-03-17 19:43:53.938 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:53.938 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:53.938 -07 000000551 INF: FPGA: Recv ZSGSRD 30734
17-03-17 19:43:53.948 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:53.948 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:53.948 -07 000000541 INF: FPGA: Recv ZPIEZORD 26690
17-03-17 19:43:53.958 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:53.958 -07 000000476 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.592 V. Piezo Error = -8.9 V.
17-03-17 19:43:53.958 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30734 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30736 (-137.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30726 (-136.9 uncal um), Max = 30739 (-137.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:43:53.958 -07 000000476 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30734, posNoise = 5, negNoise = 8
17-03-17 19:43:53.958 -07 000000476 INF: Z Motor: After move to -0.137766, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:53.958 -07 000000476 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-17 19:43:53.958 -07 000000476 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:43:54.008 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1709 ms
17-03-17 19:43:54.008 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:43:54.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:54.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:54.008 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:54.008 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:54.008 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:43:54.008 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:54.008 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:54.008 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:43:54.018 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:43:54.018 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:43:54.018 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:43:54.018 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:43:54.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:43:54.068 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:43:54.268 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:43:54.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:43:54.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:43:54.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:43:54.308 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:43:54.308 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 19:43:54.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:43:54.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:43:54.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:54.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:43:54.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 19:43:54.408 -07 000000431 INF: Autofocus start
17-03-17 19:43:54.408 -07 000000431 INF: MeasureProfile start
17-03-17 19:43:54.408 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:54.408 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:54.418 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:43:54.418 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:43:54.418 -07 000000431 INF: MeasureProfile done
17-03-17 19:43:54.418 -07 000000431 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:43:54.418 -07 000000431 INF: Autofocus finished
17-03-17 19:43:54.618 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:43:54.618 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:43:54.618 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.137765087976016. ----------
17-03-17 19:43:54.618 -07 000000610 INF: Cycle	29	Tile	9	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:43:54.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28619, sync = True, waitForSettling = True)
17-03-17 19:43:54.628 -07 000000610 INF: Z Motor: Moving to -0.131009 mm, started at -0.137765 mm, distance = 6.76 um
17-03-17 19:43:54.628 -07 000000610 INF: FPGA: Xmit ZDACW 28619\n [Z Motor]
17-03-17 19:43:54.628 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:43:54.638 -07 000000610 INF: FPGA: 'ZDACW 28619' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:43:54.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:54.638 -07 000000541 INF: FPGA: Recv ZDACR 28619
17-03-17 19:43:54.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:54.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:43:54.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:54.798 -07 000000478 INF: FPGA: Recv ZSGSRD 29673
17-03-17 19:43:54.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:54.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:54.808 -07 000000482 INF: FPGA: Recv ZSGSRD 29687
17-03-17 19:43:54.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:54.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:54.818 -07 000000541 INF: FPGA: Recv ZSGSRD 29688
17-03-17 19:43:54.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:54.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:54.828 -07 000000424 INF: FPGA: Recv ZSGSRD 29688
17-03-17 19:43:54.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:54.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:54.838 -07 000000569 INF: FPGA: Recv ZSGSRD 29681
17-03-17 19:43:54.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:54.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:54.848 -07 000000618 INF: FPGA: Recv ZSGSRD 29683
17-03-17 19:43:54.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:54.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:54.858 -07 000000478 INF: FPGA: Recv ZSGSRD 29693
17-03-17 19:43:54.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:54.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:54.868 -07 000000541 INF: FPGA: Recv ZSGSRD 29686
17-03-17 19:43:54.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:54.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:54.878 -07 000000486 INF: FPGA: Recv ZSGSRD 29681
17-03-17 19:43:54.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:54.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:54.888 -07 000000569 INF: FPGA: Recv ZSGSRD 29684
17-03-17 19:43:54.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:54.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:54.898 -07 000000618 INF: FPGA: Recv ZPIEZORD 25285
17-03-17 19:43:54.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:54.908 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -9.7 V.
17-03-17 19:43:54.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29684 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29685 (-130.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 29673 (-130.2 uncal um), Max = 29693 (-130.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 19:43:54.908 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29684, posNoise = 9, negNoise = 11
17-03-17 19:43:54.908 -07 000000610 INF: Z Motor: After move to -0.131009, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:54.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:43:54.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:54.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:54.908 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:54.908 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:54.908 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:43:54.908 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:54.908 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:43:54.908 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:43:54.908 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:54.908 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:43:54.908 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:43:54.908 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:43:54.918 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:43:54.918 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:43:54.918 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:43:54.918 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:43:54.928 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 19:43:54.928 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:43:54.928 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 19:43:54.928 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:43:54.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 28796 150\n [Camera]
17-03-17 19:43:55.068 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.018051,
17-03-17 19:43:55.128 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:43:55.538 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:43:55.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:43:55.538 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:55.538 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:43:55.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:43:55.538 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:55.538 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:55.538 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:43:55.538 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:55.538 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:43:55.728 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28796 789
17-03-17 19:43:55.878 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:43:55.928 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:43:55.928 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:43:55.928 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:55.928 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:43:55.928 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:43:55.928 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:55.928 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:43:55.928 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:55.928 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:43:55.938 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:43:56.068 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:43:56.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:43:56.068 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:56.068 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:56.068 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:43:56.078 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:43:56.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:43:56.078 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:56.078 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:56.078 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:43:56.258 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:43:56.258 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:43:56.268 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 28796 150' command took 2 ms to send, 1330 ms to get response, and 1333 ms overall
17-03-17 19:43:56.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:43:56.268 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.131019665227167. ------
17-03-17 19:43:56.268 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:56.268 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13769 mm
17-03-17 19:43:56.268 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:43:56.278 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:56.278 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:43:56.278 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:43:56.278 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:43:56.278 -07 000000476 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 19:43:56.278 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30079, sync = True, waitForSettling = False)
17-03-17 19:43:56.278 -07 000000626 INF: Z Motor: Moving to -0.137693 mm, started at -0.131020 mm, distance = -6.67 um
17-03-17 19:43:56.288 -07 000000626 INF: FPGA: Xmit ZDACW 30079\n [Z Motor]
17-03-17 19:43:56.288 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:43:56.298 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:56.298 -07 000000626 INF: FPGA: 'ZDACW 30079' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:43:56.298 -07 000000618 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:43:56.308 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:43:56.308 -07 000000476 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:56.308 -07 000000476 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:43:56.308 -07 000000476 INF: Y Motor: Moving 1348 steps-26
17-03-17 19:43:56.308 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:43:56.318 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:56.318 -07 000000569 INF: FPGA: Recv ZDACR 30079
17-03-17 19:43:56.328 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:43:56.328 -07 000000626 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 19:43:56.478 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 19:43:56.478 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:43:56.478 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:56.478 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:43:56.478 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 19:43:56.478 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 19:43:56.478 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:43:56.478 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:56.478 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:56.488 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:43:56.488 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 19:43:56.488 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:43:56.678 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:43:56.678 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 19:43:56.718 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:43:56.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:43:56.718 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:56.718 -07 000000462 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:43:56.728 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:43:56.728 -07 000000476 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:56.728 -07 000000476 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 19:43:56.728 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.843 mm, average velocity = 2.229 mm/sec
17-03-17 19:43:57.678 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:43:57.678 -07 000000429 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:43:57.688 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:57.688 -07 000000476 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:43:57.708 -07 000000476 INF: Y Motor: After move to 67.382607, error = -0.009560, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:43:57.708 -07 000000476 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:43:57.708 -07 000000476 INF: Y Motor: Moved to 67.3730 after 1432 ms (table move)
17-03-17 19:43:57.708 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137693 mm (DAC = 30079)
17-03-17 19:43:57.708 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:57.708 -07 000000486 INF: FPGA: Recv ZSGSRD 30729
17-03-17 19:43:57.718 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:43:57.718 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:57.718 -07 000000429 INF: FPGA: Recv ZSGSRD 30728
17-03-17 19:43:57.728 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:57.728 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:57.728 -07 000000593 INF: FPGA: Recv ZSGSRD 30728
17-03-17 19:43:57.738 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:57.738 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:57.738 -07 000000482 INF: FPGA: Recv ZSGSRD 30729
17-03-17 19:43:57.748 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:57.748 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:57.748 -07 000000618 INF: FPGA: Recv ZSGSRD 30725
17-03-17 19:43:57.758 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:57.758 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:57.758 -07 000000486 INF: FPGA: Recv ZSGSRD 30722
17-03-17 19:43:57.768 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:57.768 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:57.768 -07 000000382 INF: FPGA: Recv ZSGSRD 30725
17-03-17 19:43:57.778 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:57.778 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:57.778 -07 000000593 INF: FPGA: Recv ZSGSRD 30718
17-03-17 19:43:57.788 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:57.788 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:57.788 -07 000000482 INF: FPGA: Recv ZSGSRD 30720
17-03-17 19:43:57.798 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:57.798 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:57.798 -07 000000626 INF: FPGA: Recv ZSGSRD 30720
17-03-17 19:43:57.808 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:57.808 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:57.808 -07 000000486 INF: FPGA: Recv ZPIEZORD 26715
17-03-17 19:43:57.818 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:57.818 -07 000000501 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.590 V. Piezo Error = -8.8 V.
17-03-17 19:43:57.818 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30724 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30725 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30718 (-136.9 uncal um), Max = 30729 (-136.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:43:57.818 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30724, posNoise = 5, negNoise = 6
17-03-17 19:43:57.818 -07 000000501 INF: Z Motor: After move to -0.137693, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:57.818 -07 000000501 INF: Z Motor: Settle wait time = 1435 ms, measure time = 103 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:43:57.818 -07 000000501 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:43:57.868 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 19:43:57.868 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:43:57.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:57.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:57.868 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:57.868 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:43:57.868 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:57.868 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:57.868 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:57.868 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:43:57.878 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:43:57.878 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:43:57.878 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:43:57.878 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:43:57.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:43:57.928 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:43:58.128 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:43:58.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:43:58.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:43:58.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1162196864, 0x0, 559484976) start.
17-03-17 19:43:58.168 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:43:58.168 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 19:43:58.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 19:43:58.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1162196864, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:43:58.248 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:58.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:43:58.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 19:43:58.268 -07 000000429 INF: Autofocus start
17-03-17 19:43:58.268 -07 000000429 INF: MeasureProfile start
17-03-17 19:43:58.268 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:43:58.268 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:43:58.278 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:43:58.278 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:43:58.278 -07 000000429 INF: MeasureProfile done
17-03-17 19:43:58.278 -07 000000429 INF: X=32  Z correction [um]=0.1299841
17-03-17 19:43:58.278 -07 000000429 INF: Autofocus finished
17-03-17 19:43:58.478 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:43:58.478 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 19:43:58.478 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.373046875, Z-position -0.137700845854599. ----------
17-03-17 19:43:58.488 -07 000000610 INF: Cycle	29	Tile	10	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:43:58.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28620, sync = True, waitForSettling = True)
17-03-17 19:43:58.488 -07 000000610 INF: Z Motor: Moving to -0.131014 mm, started at -0.137701 mm, distance = 6.69 um
17-03-17 19:43:58.488 -07 000000610 INF: FPGA: Xmit ZDACW 28620\n [Z Motor]
17-03-17 19:43:58.488 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:43:58.498 -07 000000610 INF: FPGA: 'ZDACW 28620' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:43:58.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:43:58.498 -07 000000462 INF: FPGA: Recv ZDACR 28620
17-03-17 19:43:58.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:58.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:43:58.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:58.658 -07 000000626 INF: FPGA: Recv ZSGSRD 29691
17-03-17 19:43:58.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:43:58.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:58.668 -07 000000431 INF: FPGA: Recv ZSGSRD 29677
17-03-17 19:43:58.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:58.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:58.678 -07 000000501 INF: FPGA: Recv ZSGSRD 29685
17-03-17 19:43:58.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:58.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:58.688 -07 000000486 INF: FPGA: Recv ZSGSRD 29688
17-03-17 19:43:58.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:58.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:58.698 -07 000000462 INF: FPGA: Recv ZSGSRD 29685
17-03-17 19:43:58.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:58.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:58.708 -07 000000482 INF: FPGA: Recv ZSGSRD 29689
17-03-17 19:43:58.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:58.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:58.718 -07 000000547 INF: FPGA: Recv ZSGSRD 29689
17-03-17 19:43:58.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:58.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:58.728 -07 000000382 INF: FPGA: Recv ZSGSRD 29684
17-03-17 19:43:58.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:58.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:58.738 -07 000000618 INF: FPGA: Recv ZSGSRD 29684
17-03-17 19:43:58.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:43:58.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:43:58.748 -07 000000486 INF: FPGA: Recv ZSGSRD 29684
17-03-17 19:43:58.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:58.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:43:58.758 -07 000000462 INF: FPGA: Recv ZPIEZORD 25349
17-03-17 19:43:58.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:43:58.768 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -9.5 V.
17-03-17 19:43:58.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29686 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29685 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29677 (-130.2 uncal um), Max = 29691 (-130.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:43:58.768 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29686, posNoise = 5, negNoise = 9
17-03-17 19:43:58.768 -07 000000610 INF: Z Motor: After move to -0.131014, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:43:58.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:43:58.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:43:58.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:43:58.768 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:43:58.768 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:43:58.768 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:43:58.768 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:43:58.768 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:43:58.768 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:43:58.768 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:43:58.768 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:43:58.768 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:43:58.768 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:43:58.768 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:43:58.768 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:43:58.768 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:43:58.768 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:43:58.788 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 19:43:58.788 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:43:58.788 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 19:43:58.788 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:43:58.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 28796 150\n [Camera]
17-03-17 19:43:58.988 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:43:59.388 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:43:59.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:43:59.398 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:59.398 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:59.398 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:43:59.398 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:43:59.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:43:59.398 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:59.398 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:59.398 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:43:59.588 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28796 789
17-03-17 19:43:59.738 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:43:59.788 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 19:43:59.788 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:43:59.788 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:59.788 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:43:59.788 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:43:59.788 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:43:59.798 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:59.798 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:43:59.798 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:43:59.798 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:43:59.928 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:43:59.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:43:59.928 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:43:59.928 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:43:59.928 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:43:59.928 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:43:59.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:43:59.938 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:43:59.938 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:43:59.938 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:44:00.118 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:44:00.118 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:44:00.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 28796 150' command took 2 ms to send, 1328 ms to get response, and 1332 ms overall
17-03-17 19:44:00.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:44:00.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.373046875, Z-Position -0.131032513651451. ------
17-03-17 19:44:00.238 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13746 mm
17-03-17 19:44:00.238 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:44:00.238 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:44:00.238 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:44:00.238 -07 000000486 INF: Y Motor: Moving to 68.2126 mm, started at 67.3730 mm, delta = 0.8396 mm
17-03-17 19:44:00.238 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:44:00.248 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:44:00.248 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:44:00.248 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30027, sync = True, waitForSettling = False)
17-03-17 19:44:00.248 -07 000000569 INF: Z Motor: Moving to -0.137455 mm, started at -0.131033 mm, distance = -6.42 um
17-03-17 19:44:00.258 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:00.258 -07 000000429 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:44:00.268 -07 000000569 INF: FPGA: Xmit ZDACW 30027\n [Z Motor]
17-03-17 19:44:00.268 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 19:44:00.268 -07 000000486 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:00.268 -07 000000486 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:44:00.268 -07 000000486 INF: Y Motor: Moving 1343 steps-21
17-03-17 19:44:00.268 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:44:00.278 -07 000000569 INF: FPGA: 'ZDACW 30027' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:44:00.278 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:44:00.278 -07 000000478 INF: FPGA: Recv ZDACR 30027
17-03-17 19:44:00.288 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:44:00.288 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:00.288 -07 000000569 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 19:44:00.318 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:44:00.318 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:44:00.318 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:00.318 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:44:00.318 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:44:00.318 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:00.318 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:44:00.328 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:44:00.328 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:44:00.328 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:44:00.428 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.977204,
17-03-17 19:44:00.448 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:44:00.448 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 19:44:00.658 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 19:44:00.658 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:44:00.698 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:00.698 -07 000000482 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:44:00.708 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:44:00.708 -07 000000486 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:00.708 -07 000000486 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:44:00.708 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-17 19:44:01.658 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:01.658 -07 000000438 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:44:01.668 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:01.668 -07 000000486 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:01.678 -07 000000486 INF: Y Motor: After move to 68.212608, error = -0.006554, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:44:01.678 -07 000000486 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:44:01.678 -07 000000486 INF: Y Motor: Moved to 68.2061 after 1439 ms (table move)
17-03-17 19:44:01.688 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137455 mm (DAC = 30027)
17-03-17 19:44:01.688 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:01.688 -07 000000593 INF: FPGA: Recv ZSGSRD 30691
17-03-17 19:44:01.698 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:44:01.698 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:01.698 -07 000000501 INF: FPGA: Recv ZSGSRD 30690
17-03-17 19:44:01.708 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:01.708 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:01.708 -07 000000431 INF: FPGA: Recv ZSGSRD 30679
17-03-17 19:44:01.718 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:01.718 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:01.718 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:44:01.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:44:01.718 -07 000000501 INF: FPGA: Recv ZSGSRD 30682
17-03-17 19:44:01.728 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:01.728 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:01.728 -07 000000569 INF: FPGA: Recv ZSGSRD 30690
17-03-17 19:44:01.738 -07 000000551 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:01.738 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:01.738 -07 000000626 INF: FPGA: Recv ZSGSRD 30693
17-03-17 19:44:01.748 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:01.748 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:01.748 -07 000000593 INF: FPGA: Recv ZSGSRD 30684
17-03-17 19:44:01.758 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:01.758 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:01.758 -07 000000462 INF: FPGA: Recv ZSGSRD 30686
17-03-17 19:44:01.768 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:01.768 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:01.768 -07 000000424 INF: FPGA: Recv ZSGSRD 30683
17-03-17 19:44:01.778 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:01.778 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:01.778 -07 000000569 INF: FPGA: Recv ZSGSRD 30689
17-03-17 19:44:01.788 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:01.788 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:44:01.788 -07 000000626 INF: FPGA: Recv ZPIEZORD 26681
17-03-17 19:44:01.798 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:01.798 -07 000000551 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.582 V. Piezo Error = -8.8 V.
17-03-17 19:44:01.798 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30687 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30688 (-136.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30679 (-136.6 uncal um), Max = 30693 (-136.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:44:01.798 -07 000000551 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30687, posNoise = 6, negNoise = 8
17-03-17 19:44:01.798 -07 000000551 INF: Z Motor: After move to -0.137455, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:44:01.798 -07 000000551 INF: Z Motor: Settle wait time = 1441 ms, measure time = 109 ms (allowed 150 ms), total time = 1550 ms
17-03-17 19:44:01.798 -07 000000551 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 19:44:01.848 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 19:44:01.848 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:44:01.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:44:01.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:44:01.848 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:44:01.848 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:44:01.848 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:44:01.848 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:44:01.848 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:44:01.858 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:44:01.858 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:44:01.858 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:44:01.868 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:44:01.868 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:44:01.868 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:44:01.908 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:44:02.108 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:44:02.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:44:02.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:44:02.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:44:02.148 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:44:02.148 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 19:44:02.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 19:44:02.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:44:02.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:02.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:44:02.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:44:02.248 -07 000000569 INF: Autofocus start
17-03-17 19:44:02.248 -07 000000569 INF: MeasureProfile start
17-03-17 19:44:02.248 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:44:02.248 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:44:02.258 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:44:02.258 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:44:02.268 -07 000000569 INF: MeasureProfile done
17-03-17 19:44:02.268 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:44:02.268 -07 000000569 INF: Autofocus finished
17-03-17 19:44:02.458 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:44:02.458 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:44:02.458 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2060546875, Z-position -0.137463150005353. ----------
17-03-17 19:44:02.458 -07 000000610 INF: Cycle	29	Tile	11	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:44:02.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28535, sync = True, waitForSettling = True)
17-03-17 19:44:02.468 -07 000000610 INF: Z Motor: Moving to -0.130625 mm, started at -0.137463 mm, distance = 6.84 um
17-03-17 19:44:02.468 -07 000000610 INF: FPGA: Xmit ZDACW 28535\n [Z Motor]
17-03-17 19:44:02.468 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:44:02.478 -07 000000610 INF: FPGA: 'ZDACW 28535' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:44:02.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:44:02.478 -07 000000429 INF: FPGA: Recv ZDACR 28535
17-03-17 19:44:02.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:02.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:44:02.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:02.638 -07 000000462 INF: FPGA: Recv ZSGSRD 29622
17-03-17 19:44:02.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:02.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:02.648 -07 000000551 INF: FPGA: Recv ZSGSRD 29629
17-03-17 19:44:02.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:02.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:02.658 -07 000000541 INF: FPGA: Recv ZSGSRD 29624
17-03-17 19:44:02.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:02.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:02.668 -07 000000424 INF: FPGA: Recv ZSGSRD 29618
17-03-17 19:44:02.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:02.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:02.678 -07 000000561 INF: FPGA: Recv ZSGSRD 29622
17-03-17 19:44:02.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:02.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:02.688 -07 000000462 INF: FPGA: Recv ZSGSRD 29621
17-03-17 19:44:02.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:02.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:02.698 -07 000000551 INF: FPGA: Recv ZSGSRD 29625
17-03-17 19:44:02.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:02.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:02.708 -07 000000429 INF: FPGA: Recv ZSGSRD 29616
17-03-17 19:44:02.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:02.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:02.718 -07 000000424 INF: FPGA: Recv ZSGSRD 29620
17-03-17 19:44:02.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:02.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:02.728 -07 000000561 INF: FPGA: Recv ZSGSRD 29628
17-03-17 19:44:02.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:02.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:44:02.738 -07 000000486 INF: FPGA: Recv ZPIEZORD 25286
17-03-17 19:44:02.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:02.748 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.5 V.
17-03-17 19:44:02.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29622 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29622 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29616 (-129.8 uncal um), Max = 29629 (-129.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:44:02.748 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29622, posNoise = 7, negNoise = 6
17-03-17 19:44:02.748 -07 000000610 INF: Z Motor: After move to -0.130625, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:44:02.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:44:02.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:44:02.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:44:02.748 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:44:02.748 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:44:02.748 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:44:02.748 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:44:02.748 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:44:02.748 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:44:02.748 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 19:44:02.748 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:44:02.748 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:44:02.748 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:44:02.758 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:44:02.758 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:44:02.758 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:44:02.758 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:44:02.768 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:44:02.768 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:44:02.768 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:44:02.768 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:44:02.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 28711 150\n [Camera]
17-03-17 19:44:02.968 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:44:03.368 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:44:03.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:44:03.368 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:44:03.378 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:44:03.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:44:03.378 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:44:03.378 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:44:03.378 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:44:03.378 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:44:03.378 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:44:03.568 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28711 789
17-03-17 19:44:03.708 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:44:03.758 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:44:03.758 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:44:03.758 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:03.758 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:44:03.758 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:44:03.758 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:03.758 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:44:03.758 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:44:03.758 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:44:03.768 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:44:03.908 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-17 19:44:03.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-17 19:44:03.908 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:44:03.918 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-17 19:44:03.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-17 19:44:03.918 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:44:03.918 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:44:03.918 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:44:03.918 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:44:03.918 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:44:04.098 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:44:04.098 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:44:04.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 28711 150' command took 2 ms to send, 1326 ms to get response, and 1332 ms overall
17-03-17 19:44:04.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:44:04.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2060546875, Z-Position -0.130621364074378. ------
17-03-17 19:44:04.108 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13724 mm
17-03-17 19:44:04.108 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:44:04.108 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:44:04.108 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:44:04.108 -07 000000438 INF: Y Motor: Moving to 69.0426 mm, started at 68.2061 mm, delta = 0.8366 mm
17-03-17 19:44:04.108 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29980, sync = True, waitForSettling = False)
17-03-17 19:44:04.108 -07 000000551 INF: Z Motor: Moving to -0.137240 mm, started at -0.130621 mm, distance = -6.62 um
17-03-17 19:44:04.108 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:44:04.118 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:44:04.228 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:04.228 -07 000000476 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:44:04.238 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:44:04.238 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 125 ms overall
17-03-17 19:44:04.238 -07 000000438 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:04.238 -07 000000438 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:44:04.238 -07 000000438 INF: Y Motor: Moving 1338 steps-14
17-03-17 19:44:04.248 -07 000000551 INF: FPGA: Xmit ZDACW 29980\n [Z Motor]
17-03-17 19:44:04.248 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:44:04.258 -07 000000551 INF: FPGA: 'ZDACW 29980' command took 0 ms to send, 0 ms to get response, and 144 ms overall
17-03-17 19:44:04.258 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:44:04.268 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:44:04.268 -07 000000482 INF: FPGA: Recv ZDACR 29980
17-03-17 19:44:04.278 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:44:04.278 -07 000000551 INF: Z Motor: MoveAbsStepped took 165 ms (did NOT wait for settling yet))
17-03-17 19:44:04.318 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:44:04.318 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:44:04.318 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:04.318 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:44:04.318 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:44:04.318 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:04.318 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:44:04.328 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:44:04.328 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 19:44:04.328 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:44:04.438 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:44:04.438 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 207 ms overall
17-03-17 19:44:04.628 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 19:44:04.628 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:44:04.668 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:04.668 -07 000000424 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:44:04.678 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:44:04.678 -07 000000438 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:04.678 -07 000000438 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:44:04.678 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.107 mm/sec
17-03-17 19:44:05.628 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:05.628 -07 000000618 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:44:05.638 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:05.638 -07 000000438 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:05.658 -07 000000438 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:44:05.658 -07 000000438 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:44:05.658 -07 000000438 INF: Y Motor: Moved to 69.0278 after 1547 ms (table move)
17-03-17 19:44:05.658 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137240 mm (DAC = 29980)
17-03-17 19:44:05.658 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:05.658 -07 000000429 INF: FPGA: Recv ZSGSRD 30647
17-03-17 19:44:05.668 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:44:05.668 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:05.668 -07 000000561 INF: FPGA: Recv ZSGSRD 30638
17-03-17 19:44:05.678 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:05.678 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:05.678 -07 000000462 INF: FPGA: Recv ZSGSRD 30660
17-03-17 19:44:05.688 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:05.688 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:05.688 -07 000000482 INF: FPGA: Recv ZSGSRD 30651
17-03-17 19:44:05.698 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:05.698 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:05.698 -07 000000382 INF: FPGA: Recv ZSGSRD 30656
17-03-17 19:44:05.708 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:05.708 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:05.708 -07 000000551 INF: FPGA: Recv ZSGSRD 30650
17-03-17 19:44:05.718 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:05.718 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:05.718 -07 000000541 INF: FPGA: Recv ZSGSRD 30654
17-03-17 19:44:05.728 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:05.728 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:05.728 -07 000000501 INF: FPGA: Recv ZSGSRD 30656
17-03-17 19:44:05.738 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:05.738 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:05.738 -07 000000482 INF: FPGA: Recv ZSGSRD 30649
17-03-17 19:44:05.748 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:05.748 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:05.748 -07 000000382 INF: FPGA: Recv ZSGSRD 30653
17-03-17 19:44:05.758 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:05.758 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:44:05.758 -07 000000429 INF: FPGA: Recv ZPIEZORD 26690
17-03-17 19:44:05.768 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:05.768 -07 000000486 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.575 V. Piezo Error = -8.7 V.
17-03-17 19:44:05.768 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30651 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30652 (-136.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 30638 (-136.4 uncal um), Max = 30660 (-136.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 19:44:05.768 -07 000000486 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30651, posNoise = 9, negNoise = 13
17-03-17 19:44:05.768 -07 000000486 INF: Z Motor: After move to -0.137240, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:44:05.768 -07 000000486 INF: Z Motor: Settle wait time = 1550 ms, measure time = 105 ms (allowed 150 ms), total time = 1655 ms
17-03-17 19:44:05.768 -07 000000486 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:44:05.788 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.974486,
17-03-17 19:44:05.818 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1707 ms
17-03-17 19:44:05.818 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:44:05.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:44:05.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:44:05.828 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:44:05.828 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:44:05.828 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:44:05.828 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:44:05.828 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:44:05.828 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:44:05.838 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:44:05.838 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:44:05.838 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:44:05.838 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:44:05.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:44:05.888 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:44:06.088 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:44:06.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:44:06.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:44:06.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:44:06.128 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:44:06.128 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 19:44:06.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:44:06.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:44:06.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:06.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:44:06.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:44:06.228 -07 000000551 INF: Autofocus start
17-03-17 19:44:06.228 -07 000000551 INF: MeasureProfile start
17-03-17 19:44:06.228 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:44:06.228 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:44:06.238 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:44:06.238 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:44:06.238 -07 000000551 INF: MeasureProfile done
17-03-17 19:44:06.238 -07 000000551 INF: X=32  Z correction [um]=0.1299841
17-03-17 19:44:06.238 -07 000000551 INF: Autofocus finished
17-03-17 19:44:06.438 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:44:06.438 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:44:06.438 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.13723187836825. ----------
17-03-17 19:44:06.438 -07 000000610 INF: Cycle	29	Tile	12	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:44:06.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28521, sync = True, waitForSettling = True)
17-03-17 19:44:06.448 -07 000000610 INF: Z Motor: Moving to -0.130561 mm, started at -0.137232 mm, distance = 6.67 um
17-03-17 19:44:06.448 -07 000000610 INF: FPGA: Xmit ZDACW 28521\n [Z Motor]
17-03-17 19:44:06.448 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:44:06.458 -07 000000610 INF: FPGA: 'ZDACW 28521' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:06.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:44:06.458 -07 000000476 INF: FPGA: Recv ZDACR 28521
17-03-17 19:44:06.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:06.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:44:06.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:06.618 -07 000000593 INF: FPGA: Recv ZSGSRD 29609
17-03-17 19:44:06.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:06.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:06.628 -07 000000547 INF: FPGA: Recv ZSGSRD 29618
17-03-17 19:44:06.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:06.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:06.638 -07 000000626 INF: FPGA: Recv ZSGSRD 29614
17-03-17 19:44:06.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:06.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:06.648 -07 000000501 INF: FPGA: Recv ZSGSRD 29615
17-03-17 19:44:06.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:44:06.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:06.658 -07 000000569 INF: FPGA: Recv ZSGSRD 29620
17-03-17 19:44:06.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:06.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:06.668 -07 000000482 INF: FPGA: Recv ZSGSRD 29618
17-03-17 19:44:06.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:06.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:06.678 -07 000000431 INF: FPGA: Recv ZSGSRD 29611
17-03-17 19:44:06.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:06.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:06.688 -07 000000476 INF: FPGA: Recv ZSGSRD 29607
17-03-17 19:44:06.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:06.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:06.698 -07 000000501 INF: FPGA: Recv ZSGSRD 29617
17-03-17 19:44:06.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:06.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:06.708 -07 000000478 INF: FPGA: Recv ZSGSRD 29614
17-03-17 19:44:06.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:06.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:44:06.718 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:44:06.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:44:06.718 -07 000000501 INF: FPGA: Recv ZPIEZORD 25301
17-03-17 19:44:06.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:06.728 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.5 V.
17-03-17 19:44:06.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29614 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29614 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29607 (-129.7 uncal um), Max = 29620 (-129.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:44:06.728 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29614, posNoise = 6, negNoise = 7
17-03-17 19:44:06.728 -07 000000610 INF: Z Motor: After move to -0.130561, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:44:06.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:44:06.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:44:06.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:44:06.728 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:44:06.728 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:44:06.728 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:44:06.728 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:44:06.728 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:44:06.728 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:44:06.728 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:44:06.728 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:44:06.728 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:44:06.728 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:44:06.728 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:44:06.728 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:44:06.738 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:44:06.738 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:44:06.738 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:44:06.738 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:44:06.748 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:44:06.748 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:44:06.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 28697 150\n [Camera]
17-03-17 19:44:06.948 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:44:07.348 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:44:07.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:44:07.348 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:44:07.358 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:44:07.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:44:07.358 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:44:07.358 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:44:07.358 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:44:07.358 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:44:07.358 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:44:07.548 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28697 789
17-03-17 19:44:07.688 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:44:07.738 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:44:07.738 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:44:07.738 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:07.738 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:44:07.738 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:44:07.738 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:07.748 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:44:07.748 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:44:07.748 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:44:07.748 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:44:07.888 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:44:07.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:44:07.888 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:44:07.888 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:44:07.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:44:07.888 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:44:07.888 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:44:07.888 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:44:07.888 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:44:07.888 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 19:44:08.078 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-17 19:44:08.078 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:44:08.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 28697 150' command took 2 ms to send, 1329 ms to get response, and 1336 ms overall
17-03-17 19:44:08.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:44:08.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.130569970377244. ------
17-03-17 19:44:08.088 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:44:08.088 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13694 mm
17-03-17 19:44:08.088 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:44:08.088 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:44:08.088 -07 000000618 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 19:44:08.088 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29915, sync = True, waitForSettling = False)
17-03-17 19:44:08.088 -07 000000424 INF: Z Motor: Moving to -0.136942 mm, started at -0.130570 mm, distance = -6.37 um
17-03-17 19:44:08.088 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:44:08.098 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:44:08.098 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:08.098 -07 000000626 INF: FPGA: Recv YRDPOS 141370
17-03-17 19:44:08.108 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:44:08.108 -07 000000618 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:08.108 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:44:08.108 -07 000000618 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:44:08.108 -07 000000618 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:44:08.118 -07 000000424 INF: FPGA: Xmit ZDACW 29915\n [Z Motor]
17-03-17 19:44:08.118 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:44:08.128 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:44:08.128 -07 000000424 INF: FPGA: 'ZDACW 29915' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:44:08.138 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:44:08.138 -07 000000429 INF: FPGA: Recv ZDACR 29915
17-03-17 19:44:08.148 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:44:08.148 -07 000000424 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 19:44:08.278 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:44:08.278 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:44:08.278 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:08.288 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:44:08.288 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:44:08.288 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:44:08.288 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:08.288 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:44:08.288 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:44:08.288 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:44:08.308 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:44:08.308 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 215 ms overall
17-03-17 19:44:08.498 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 19:44:08.498 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:44:08.538 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:08.538 -07 000000382 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:44:08.548 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:44:08.548 -07 000000618 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:08.548 -07 000000618 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:44:08.548 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.144 mm/sec
17-03-17 19:44:09.498 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:09.498 -07 000000382 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:44:09.508 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:09.508 -07 000000618 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:09.528 -07 000000618 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:44:09.528 -07 000000618 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:44:09.528 -07 000000618 INF: Y Motor: Moved to 69.8643 after 1433 ms (table move)
17-03-17 19:44:09.528 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136942 mm (DAC = 29915)
17-03-17 19:44:09.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:09.528 -07 000000541 INF: FPGA: Recv ZSGSRD 30608
17-03-17 19:44:09.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:44:09.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:09.538 -07 000000547 INF: FPGA: Recv ZSGSRD 30610
17-03-17 19:44:09.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:09.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:09.548 -07 000000561 INF: FPGA: Recv ZSGSRD 30608
17-03-17 19:44:09.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:09.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:09.558 -07 000000482 INF: FPGA: Recv ZSGSRD 30611
17-03-17 19:44:09.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:09.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:09.568 -07 000000593 INF: FPGA: Recv ZSGSRD 30609
17-03-17 19:44:09.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:09.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:09.578 -07 000000618 INF: FPGA: Recv ZSGSRD 30611
17-03-17 19:44:09.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:09.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:09.588 -07 000000462 INF: FPGA: Recv ZSGSRD 30603
17-03-17 19:44:09.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:09.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:09.598 -07 000000551 INF: FPGA: Recv ZSGSRD 30602
17-03-17 19:44:09.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:09.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:09.608 -07 000000438 INF: FPGA: Recv ZSGSRD 30608
17-03-17 19:44:09.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:09.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:09.618 -07 000000476 INF: FPGA: Recv ZSGSRD 30606
17-03-17 19:44:09.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:09.628 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:44:09.628 -07 000000486 INF: FPGA: Recv ZPIEZORD 26628
17-03-17 19:44:09.638 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:09.638 -07 000000431 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.565 V. Piezo Error = -8.8 V.
17-03-17 19:44:09.638 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30608 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30608 (-136.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30602 (-136.1 uncal um), Max = 30611 (-136.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:44:09.638 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30608, posNoise = 3, negNoise = 6
17-03-17 19:44:09.638 -07 000000431 INF: Z Motor: After move to -0.136942, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:44:09.638 -07 000000431 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-17 19:44:09.638 -07 000000431 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:44:09.688 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 19:44:09.688 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:44:09.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:44:09.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:44:09.688 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:44:09.688 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:44:09.688 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:44:09.688 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:44:09.698 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:44:09.698 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:44:09.698 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:44:09.698 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:44:09.708 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:44:09.708 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:44:09.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:44:09.758 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:44:09.958 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:44:09.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:44:09.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:44:09.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 19:44:09.998 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:44:09.998 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 19:44:09.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 19:44:10.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:44:10.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:10.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:44:10.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:44:10.098 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:44:10.098 -07 000000462 INF: Autofocus start
17-03-17 19:44:10.098 -07 000000462 INF: MeasureProfile start
17-03-17 19:44:10.108 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:44:10.108 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:44:10.108 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:44:10.118 -07 000000462 INF: MeasureProfile done
17-03-17 19:44:10.118 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:44:10.118 -07 000000462 INF: Autofocus finished
17-03-17 19:44:10.308 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:44:10.308 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 19:44:10.318 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.136955637246154. ----------
17-03-17 19:44:10.318 -07 000000610 INF: Cycle	29	Tile	13	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:44:10.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28439, sync = True, waitForSettling = True)
17-03-17 19:44:10.318 -07 000000610 INF: Z Motor: Moving to -0.130185 mm, started at -0.136956 mm, distance = 6.77 um
17-03-17 19:44:10.318 -07 000000610 INF: FPGA: Xmit ZDACW 28439\n [Z Motor]
17-03-17 19:44:10.318 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:44:10.328 -07 000000610 INF: FPGA: 'ZDACW 28439' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:44:10.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:44:10.328 -07 000000478 INF: FPGA: Recv ZDACR 28439
17-03-17 19:44:10.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:10.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:44:10.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:10.488 -07 000000501 INF: FPGA: Recv ZSGSRD 29557
17-03-17 19:44:10.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:10.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:10.498 -07 000000482 INF: FPGA: Recv ZSGSRD 29560
17-03-17 19:44:10.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:10.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:10.508 -07 000000541 INF: FPGA: Recv ZSGSRD 29554
17-03-17 19:44:10.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:10.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:10.518 -07 000000429 INF: FPGA: Recv ZSGSRD 29552
17-03-17 19:44:10.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:10.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:10.528 -07 000000478 INF: FPGA: Recv ZSGSRD 29554
17-03-17 19:44:10.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:10.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:10.538 -07 000000501 INF: FPGA: Recv ZSGSRD 29556
17-03-17 19:44:10.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:10.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:10.548 -07 000000476 INF: FPGA: Recv ZSGSRD 29557
17-03-17 19:44:10.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:10.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:10.558 -07 000000541 INF: FPGA: Recv ZSGSRD 29551
17-03-17 19:44:10.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:10.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:10.568 -07 000000429 INF: FPGA: Recv ZSGSRD 29556
17-03-17 19:44:10.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:10.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:10.578 -07 000000462 INF: FPGA: Recv ZSGSRD 29558
17-03-17 19:44:10.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:10.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:44:10.588 -07 000000501 INF: FPGA: Recv ZPIEZORD 25237
17-03-17 19:44:10.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:10.598 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.340 V. Piezo Error = -9.5 V.
17-03-17 19:44:10.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29556 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29556 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29551 (-129.4 uncal um), Max = 29560 (-129.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:44:10.598 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29556, posNoise = 4, negNoise = 5
17-03-17 19:44:10.598 -07 000000610 INF: Z Motor: After move to -0.130185, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:44:10.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:44:10.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:44:10.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:44:10.598 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:44:10.598 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:44:10.598 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:44:10.598 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:44:10.598 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:44:10.598 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:44:10.598 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:44:10.598 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:44:10.598 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:44:10.608 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:44:10.608 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:44:10.608 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:44:10.608 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:44:10.608 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:44:10.618 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:44:10.618 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:44:10.618 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:44:10.618 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:44:10.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 28616 150\n [Camera]
17-03-17 19:44:10.818 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:44:11.148 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.956714,
17-03-17 19:44:11.218 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:44:11.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:44:11.218 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:44:11.218 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:44:11.218 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:44:11.218 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:44:11.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:44:11.228 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:44:11.228 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:44:11.228 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:44:11.418 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28616 790
17-03-17 19:44:11.558 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:44:11.598 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:44:11.598 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:44:11.598 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:11.598 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:44:11.598 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:44:11.598 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:11.598 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:44:11.608 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:44:11.608 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:44:11.608 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:44:11.718 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:44:11.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:44:11.758 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:44:11.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:44:11.758 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:44:11.758 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:44:11.758 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:44:11.758 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:44:11.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:44:11.758 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:44:11.758 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:44:11.758 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:44:11.948 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:44:11.948 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:44:11.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 28616 150' command took 2 ms to send, 1326 ms to get response, and 1332 ms overall
17-03-17 19:44:12.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:44:12.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8642578125, Z-Position -0.130197366073022. ------
17-03-17 19:44:12.078 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:44:12.078 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13664 mm
17-03-17 19:44:12.078 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:44:12.078 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:44:12.078 -07 000000482 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 19:44:12.078 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29849, sync = True, waitForSettling = False)
17-03-17 19:44:12.078 -07 000000424 INF: Z Motor: Moving to -0.136640 mm, started at -0.130197 mm, distance = -6.44 um
17-03-17 19:44:12.078 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:44:12.088 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:44:12.088 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:12.088 -07 000000431 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:44:12.098 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:44:12.098 -07 000000482 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:12.098 -07 000000482 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:44:12.098 -07 000000482 INF: Y Motor: Moving 1341 steps-18
17-03-17 19:44:12.098 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:44:12.108 -07 000000424 INF: FPGA: Xmit ZDACW 29849\n [Z Motor]
17-03-17 19:44:12.108 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:44:12.118 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:44:12.118 -07 000000424 INF: FPGA: 'ZDACW 29849' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 19:44:12.128 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:44:12.128 -07 000000486 INF: FPGA: Recv ZDACR 29849
17-03-17 19:44:12.138 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:44:12.138 -07 000000424 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 19:44:12.158 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:44:12.158 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:44:12.158 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:12.158 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:44:12.158 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:44:12.158 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:12.158 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:44:12.168 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:44:12.168 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:44:12.168 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:44:12.298 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:44:12.298 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 19:44:12.488 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:44:12.488 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:44:12.528 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:12.528 -07 000000486 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:44:12.538 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:44:12.538 -07 000000482 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:12.538 -07 000000482 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:44:12.538 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-17 19:44:13.488 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:13.488 -07 000000486 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:44:13.498 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:13.498 -07 000000482 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:13.518 -07 000000482 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:44:13.518 -07 000000482 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:44:13.518 -07 000000482 INF: Y Motor: Moved to 70.6895 after 1434 ms (table move)
17-03-17 19:44:13.518 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136640 mm (DAC = 29849)
17-03-17 19:44:13.518 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:13.518 -07 000000547 INF: FPGA: Recv ZSGSRD 30555
17-03-17 19:44:13.528 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:44:13.528 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:13.528 -07 000000501 INF: FPGA: Recv ZSGSRD 30555
17-03-17 19:44:13.538 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:13.538 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:13.538 -07 000000593 INF: FPGA: Recv ZSGSRD 30554
17-03-17 19:44:13.548 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:13.548 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:13.548 -07 000000482 INF: FPGA: Recv ZSGSRD 30561
17-03-17 19:44:13.558 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:13.558 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:13.558 -07 000000569 INF: FPGA: Recv ZSGSRD 30561
17-03-17 19:44:13.568 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:13.568 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:13.568 -07 000000424 INF: FPGA: Recv ZSGSRD 30566
17-03-17 19:44:13.578 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:13.578 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:13.578 -07 000000382 INF: FPGA: Recv ZSGSRD 30558
17-03-17 19:44:13.588 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:13.588 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:13.588 -07 000000618 INF: FPGA: Recv ZSGSRD 30556
17-03-17 19:44:13.598 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:13.598 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:13.598 -07 000000547 INF: FPGA: Recv ZSGSRD 30558
17-03-17 19:44:13.608 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:13.608 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:13.608 -07 000000462 INF: FPGA: Recv ZSGSRD 30558
17-03-17 19:44:13.618 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:13.618 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:44:13.618 -07 000000438 INF: FPGA: Recv ZPIEZORD 26555
17-03-17 19:44:13.628 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:13.628 -07 000000561 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.555 V. Piezo Error = -8.8 V.
17-03-17 19:44:13.628 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30558 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30558 (-135.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30554 (-135.8 uncal um), Max = 30566 (-135.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:44:13.628 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30558, posNoise = 8, negNoise = 4
17-03-17 19:44:13.628 -07 000000561 INF: Z Motor: After move to -0.136640, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:44:13.628 -07 000000561 INF: Z Motor: Settle wait time = 1436 ms, measure time = 107 ms (allowed 150 ms), total time = 1543 ms
17-03-17 19:44:13.628 -07 000000561 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:44:13.678 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 19:44:13.678 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:44:13.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:44:13.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:44:13.678 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:44:13.678 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:44:13.678 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:44:13.678 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:44:13.678 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:44:13.678 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:44:13.688 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:44:13.688 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:44:13.698 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:44:13.698 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:44:13.698 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:44:13.738 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:44:13.938 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:44:13.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:44:13.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:44:13.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:44:13.978 -07 000000476 INF: FPGA: Recv @CAMSNAP 282
17-03-17 19:44:13.988 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 19:44:13.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 286 ms overall
17-03-17 19:44:14.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 19:44:14.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:14.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:44:14.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 19:44:14.088 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:44:14.088 -07 000000541 INF: Autofocus start
17-03-17 19:44:14.088 -07 000000541 INF: MeasureProfile start
17-03-17 19:44:14.088 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:44:14.098 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:44:14.098 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:44:14.098 -07 000000541 INF: MeasureProfile done
17-03-17 19:44:14.098 -07 000000541 INF: X=-6  Z correction [um]=-0.03260989
17-03-17 19:44:14.098 -07 000000541 INF: Autofocus finished
17-03-17 19:44:14.298 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:44:14.298 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:44:14.298 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.136634426639066. ----------
17-03-17 19:44:14.308 -07 000000610 INF: Cycle	29	Tile	14	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:44:14.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28355, sync = True, waitForSettling = True)
17-03-17 19:44:14.308 -07 000000610 INF: Z Motor: Moving to -0.129801 mm, started at -0.136634 mm, distance = 6.83 um
17-03-17 19:44:14.308 -07 000000610 INF: FPGA: Xmit ZDACW 28355\n [Z Motor]
17-03-17 19:44:14.308 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:44:14.318 -07 000000610 INF: FPGA: 'ZDACW 28355' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:44:14.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:44:14.318 -07 000000482 INF: FPGA: Recv ZDACR 28355
17-03-17 19:44:14.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:14.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:44:14.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:14.478 -07 000000476 INF: FPGA: Recv ZSGSRD 29495
17-03-17 19:44:14.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:14.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:14.488 -07 000000478 INF: FPGA: Recv ZSGSRD 29494
17-03-17 19:44:14.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:14.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:14.498 -07 000000438 INF: FPGA: Recv ZSGSRD 29500
17-03-17 19:44:14.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:14.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:14.508 -07 000000626 INF: FPGA: Recv ZSGSRD 29493
17-03-17 19:44:14.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:14.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:14.518 -07 000000593 INF: FPGA: Recv ZSGSRD 29496
17-03-17 19:44:14.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:14.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:14.528 -07 000000476 INF: FPGA: Recv ZSGSRD 29496
17-03-17 19:44:14.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:14.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:14.538 -07 000000382 INF: FPGA: Recv ZSGSRD 29498
17-03-17 19:44:14.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:14.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:14.548 -07 000000482 INF: FPGA: Recv ZSGSRD 29497
17-03-17 19:44:14.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:14.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:14.558 -07 000000626 INF: FPGA: Recv ZSGSRD 29490
17-03-17 19:44:14.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:14.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:14.568 -07 000000593 INF: FPGA: Recv ZSGSRD 29495
17-03-17 19:44:14.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:14.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:44:14.578 -07 000000424 INF: FPGA: Recv ZPIEZORD 25173
17-03-17 19:44:14.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:14.588 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -9.5 V.
17-03-17 19:44:14.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29495 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29496 (-129.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29490 (-129.0 uncal um), Max = 29500 (-129.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:44:14.588 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29495, posNoise = 5, negNoise = 5
17-03-17 19:44:14.588 -07 000000610 INF: Z Motor: After move to -0.129801, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:44:14.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:44:14.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:44:14.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:44:14.588 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:44:14.588 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:44:14.588 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:44:14.588 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:44:14.588 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:44:14.588 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:44:14.588 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:44:14.588 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:44:14.598 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:44:14.598 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:44:14.598 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:44:14.598 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:44:14.598 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:44:14.598 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:44:14.608 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:44:14.608 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:44:14.608 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:44:14.608 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:44:14.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 28531 150\n [Camera]
17-03-17 19:44:14.808 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:44:15.218 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:44:15.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:44:15.218 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:44:15.218 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:44:15.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:44:15.218 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:44:15.218 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:44:15.218 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:44:15.228 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:44:15.228 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:44:15.408 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28531 789
17-03-17 19:44:15.558 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:44:15.598 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:44:15.598 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:44:15.598 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:15.598 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:44:15.598 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:44:15.598 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:15.598 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:44:15.598 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:44:15.608 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:44:15.608 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:44:15.748 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:44:15.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:44:15.748 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:44:15.748 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:44:15.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:44:15.758 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:44:15.768 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:44:15.768 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:44:15.768 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:44:15.768 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:44:15.938 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:44:15.938 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:44:15.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 28531 150' command took 2 ms to send, 1328 ms to get response, and 1332 ms overall
17-03-17 19:44:15.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:44:15.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.689453125, Z-Position -0.129805489132374. ------
17-03-17 19:44:15.948 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13643 mm
17-03-17 19:44:15.948 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:44:15.948 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:44:16.058 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:44:16.058 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 113 ms overall
17-03-17 19:44:16.058 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:44:16.068 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29804, sync = True, waitForSettling = False)
17-03-17 19:44:16.068 -07 000000541 INF: Z Motor: Moving to -0.136434 mm, started at -0.129805 mm, distance = -6.63 um
17-03-17 19:44:16.068 -07 000000541 INF: FPGA: Xmit ZDACW 29804\n [Z Motor]
17-03-17 19:44:16.068 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:44:16.068 -07 000000382 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-17 19:44:16.068 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:44:16.078 -07 000000541 INF: FPGA: 'ZDACW 29804' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:16.078 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:44:16.078 -07 000000438 INF: FPGA: Recv ZDACR 29804
17-03-17 19:44:16.088 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:16.088 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:16.088 -07 000000541 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-17 19:44:16.088 -07 000000551 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:44:16.098 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:44:16.098 -07 000000382 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:16.098 -07 000000382 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:44:16.098 -07 000000382 INF: Y Motor: Moving 1349 steps-27
17-03-17 19:44:16.098 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:44:16.158 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:44:16.158 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:44:16.158 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:16.158 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:44:16.158 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:44:16.158 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:16.168 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:44:16.168 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 19:44:16.168 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:44:16.168 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 19:44:16.268 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:44:16.268 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 202 ms overall
17-03-17 19:44:16.468 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:44:16.468 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 19:44:16.508 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.009895,
17-03-17 19:44:16.528 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:16.528 -07 000000431 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:44:16.538 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:44:16.538 -07 000000382 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:16.538 -07 000000382 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:44:16.538 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.843 mm, average velocity = 2.231 mm/sec
17-03-17 19:44:16.718 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:44:16.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:44:17.488 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:17.488 -07 000000618 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:44:17.498 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:17.498 -07 000000382 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:17.518 -07 000000382 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:44:17.518 -07 000000382 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:44:17.518 -07 000000382 INF: Y Motor: Moved to 71.5200 after 1451 ms (table move)
17-03-17 19:44:17.518 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136434 mm (DAC = 29804)
17-03-17 19:44:17.518 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:17.518 -07 000000482 INF: FPGA: Recv ZSGSRD 30535
17-03-17 19:44:17.528 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:44:17.528 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:17.528 -07 000000478 INF: FPGA: Recv ZSGSRD 30532
17-03-17 19:44:17.538 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:17.538 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:17.538 -07 000000429 INF: FPGA: Recv ZSGSRD 30528
17-03-17 19:44:17.548 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:17.548 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:17.548 -07 000000431 INF: FPGA: Recv ZSGSRD 30525
17-03-17 19:44:17.558 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:17.558 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:17.558 -07 000000541 INF: FPGA: Recv ZSGSRD 30528
17-03-17 19:44:17.568 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:17.568 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:17.568 -07 000000547 INF: FPGA: Recv ZSGSRD 30535
17-03-17 19:44:17.578 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:44:17.578 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:17.578 -07 000000482 INF: FPGA: Recv ZSGSRD 30523
17-03-17 19:44:17.588 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:17.588 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:17.588 -07 000000478 INF: FPGA: Recv ZSGSRD 30519
17-03-17 19:44:17.598 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:17.598 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:17.598 -07 000000476 INF: FPGA: Recv ZSGSRD 30530
17-03-17 19:44:17.608 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:17.608 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:17.608 -07 000000551 INF: FPGA: Recv ZSGSRD 30536
17-03-17 19:44:17.618 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:17.618 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:44:17.618 -07 000000547 INF: FPGA: Recv ZPIEZORD 26490
17-03-17 19:44:17.628 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:17.628 -07 000000569 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.548 V. Piezo Error = -8.9 V.
17-03-17 19:44:17.628 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30529 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30529 (-135.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30519 (-135.6 uncal um), Max = 30536 (-135.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:44:17.628 -07 000000569 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30529, posNoise = 7, negNoise = 10
17-03-17 19:44:17.628 -07 000000569 INF: Z Motor: After move to -0.136434, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:44:17.628 -07 000000569 INF: Z Motor: Settle wait time = 1455 ms, measure time = 105 ms (allowed 150 ms), total time = 1560 ms
17-03-17 19:44:17.628 -07 000000569 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:44:17.678 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1725 ms
17-03-17 19:44:17.678 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:44:17.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:44:17.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:44:17.678 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:44:17.678 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:44:17.678 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:44:17.678 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:44:17.678 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:44:17.678 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:44:17.678 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:44:17.678 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:44:17.688 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 19:44:17.688 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:44:17.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:44:17.738 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:44:17.938 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:44:17.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:44:17.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:44:17.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:44:17.978 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:44:17.978 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 19:44:17.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 19:44:18.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:44:18.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:18.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:44:18.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:44:18.078 -07 000000541 INF: Autofocus start
17-03-17 19:44:18.078 -07 000000541 INF: MeasureProfile start
17-03-17 19:44:18.078 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:44:18.088 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:44:18.088 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 19:44:18.088 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:44:18.088 -07 000000541 INF: MeasureProfile done
17-03-17 19:44:18.088 -07 000000541 INF: X=-7  Z correction [um]=-0.03747771
17-03-17 19:44:18.088 -07 000000541 INF: Autofocus finished
17-03-17 19:44:18.288 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:44:18.288 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:44:18.288 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.136448124486955. ----------
17-03-17 19:44:18.298 -07 000000610 INF: Cycle	29	Tile	15	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:44:18.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28308, sync = True, waitForSettling = True)
17-03-17 19:44:18.298 -07 000000610 INF: Z Motor: Moving to -0.129586 mm, started at -0.136448 mm, distance = 6.86 um
17-03-17 19:44:18.298 -07 000000610 INF: FPGA: Xmit ZDACW 28308\n [Z Motor]
17-03-17 19:44:18.298 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 19:44:18.308 -07 000000610 INF: FPGA: 'ZDACW 28308' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:44:18.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:44:18.308 -07 000000626 INF: FPGA: Recv ZDACR 28308
17-03-17 19:44:18.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:18.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:44:18.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:18.468 -07 000000382 INF: FPGA: Recv ZSGSRD 29459
17-03-17 19:44:18.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:18.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:18.478 -07 000000438 INF: FPGA: Recv ZSGSRD 29459
17-03-17 19:44:18.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:18.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:18.488 -07 000000429 INF: FPGA: Recv ZSGSRD 29464
17-03-17 19:44:18.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:18.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:18.498 -07 000000424 INF: FPGA: Recv ZSGSRD 29459
17-03-17 19:44:18.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:18.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:18.508 -07 000000541 INF: FPGA: Recv ZSGSRD 29459
17-03-17 19:44:18.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:18.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:18.518 -07 000000382 INF: FPGA: Recv ZSGSRD 29465
17-03-17 19:44:18.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:18.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:18.528 -07 000000478 INF: FPGA: Recv ZSGSRD 29459
17-03-17 19:44:18.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:18.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:18.538 -07 000000561 INF: FPGA: Recv ZSGSRD 29464
17-03-17 19:44:18.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:18.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:18.548 -07 000000424 INF: FPGA: Recv ZSGSRD 29462
17-03-17 19:44:18.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:18.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:18.558 -07 000000593 INF: FPGA: Recv ZSGSRD 29461
17-03-17 19:44:18.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:18.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:44:18.568 -07 000000561 INF: FPGA: Recv ZPIEZORD 25110
17-03-17 19:44:18.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:18.578 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -9.6 V.
17-03-17 19:44:18.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29461 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29460 (-128.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29459 (-128.8 uncal um), Max = 29465 (-128.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 19:44:18.578 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29461, posNoise = 4, negNoise = 2
17-03-17 19:44:18.578 -07 000000610 INF: Z Motor: After move to -0.129586, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:44:18.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:44:18.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:44:18.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:44:18.578 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:44:18.578 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:44:18.578 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:44:18.578 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:44:18.578 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:44:18.578 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:44:18.578 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:44:18.578 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:44:18.578 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:44:18.578 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:44:18.588 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:44:18.588 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:44:18.588 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:44:18.588 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:44:18.598 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:44:18.598 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:44:18.598 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:44:18.598 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 19:44:18.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 28485 150\n [Camera]
17-03-17 19:44:18.798 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:44:19.208 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:44:19.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:44:19.208 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:44:19.208 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:44:19.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:44:19.208 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:44:19.218 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:44:19.218 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:44:19.218 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:44:19.218 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:44:19.398 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28485 789
17-03-17 19:44:19.548 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:44:19.588 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:44:19.588 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:44:19.588 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:19.588 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:44:19.588 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:44:19.588 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:19.598 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:44:19.598 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:44:19.598 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:44:19.608 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:44:19.748 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:44:19.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:44:19.748 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:44:19.748 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:44:19.748 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:44:19.748 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:44:19.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:44:19.748 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:44:19.748 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:44:19.748 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:44:19.938 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:44:19.938 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:44:19.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 28485 150' command took 2 ms to send, 1323 ms to get response, and 1332 ms overall
17-03-17 19:44:19.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:44:19.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52001953125, Z-Position -0.129587065919555. ------
17-03-17 19:44:19.938 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:44:19.938 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13550 mm
17-03-17 19:44:19.938 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:44:19.948 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29599, sync = True, waitForSettling = False)
17-03-17 19:44:19.948 -07 000000438 INF: Z Motor: Moving to -0.135496 mm, started at -0.129587 mm, distance = -5.91 um
17-03-17 19:44:19.948 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:44:19.948 -07 000000561 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 19:44:19.948 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:44:19.948 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 19:44:19.948 -07 000000438 INF: FPGA: Xmit ZDACW 29599\n [Z Motor]
17-03-17 19:44:19.948 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:44:19.958 -07 000000438 INF: FPGA: 'ZDACW 29599' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:44:19.958 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:19.958 -07 000000478 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:44:19.968 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:44:19.968 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:44:19.968 -07 000000561 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:19.968 -07 000000561 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:44:19.968 -07 000000561 INF: Y Motor: Moving 1348 steps-26
17-03-17 19:44:19.978 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:44:19.978 -07 000000476 INF: FPGA: Recv ZDACR 29599
17-03-17 19:44:19.988 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:44:19.988 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:44:19.988 -07 000000438 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 19:44:20.128 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:44:20.138 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:44:20.138 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:20.138 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:44:20.138 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:44:20.138 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:20.138 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:44:20.138 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:44:20.138 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:44:20.148 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:44:20.168 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:44:20.168 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 217 ms overall
17-03-17 19:44:20.358 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 19:44:20.358 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:44:20.398 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:20.398 -07 000000501 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:44:20.408 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:44:20.408 -07 000000561 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:20.408 -07 000000561 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:44:20.408 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 19:44:21.358 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:21.358 -07 000000541 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:44:21.368 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:21.368 -07 000000561 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:21.388 -07 000000561 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:44:21.388 -07 000000561 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:44:21.388 -07 000000561 INF: Y Motor: Moved to 72.3501 after 1441 ms (table move)
17-03-17 19:44:21.388 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135496 mm (DAC = 29599)
17-03-17 19:44:21.388 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:21.388 -07 000000462 INF: FPGA: Recv ZSGSRD 30388
17-03-17 19:44:21.398 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:44:21.398 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:21.398 -07 000000569 INF: FPGA: Recv ZSGSRD 30380
17-03-17 19:44:21.408 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:21.408 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:21.408 -07 000000551 INF: FPGA: Recv ZSGSRD 30380
17-03-17 19:44:21.418 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:21.418 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:21.418 -07 000000438 INF: FPGA: Recv ZSGSRD 30381
17-03-17 19:44:21.428 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:21.428 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:21.428 -07 000000618 INF: FPGA: Recv ZSGSRD 30379
17-03-17 19:44:21.438 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:21.438 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:21.438 -07 000000501 INF: FPGA: Recv ZSGSRD 30387
17-03-17 19:44:21.448 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:21.448 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:21.448 -07 000000547 INF: FPGA: Recv ZSGSRD 30379
17-03-17 19:44:21.458 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:21.458 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:21.458 -07 000000551 INF: FPGA: Recv ZSGSRD 30380
17-03-17 19:44:21.468 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:21.468 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:21.468 -07 000000438 INF: FPGA: Recv ZSGSRD 30382
17-03-17 19:44:21.478 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:21.478 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:21.478 -07 000000618 INF: FPGA: Recv ZSGSRD 30378
17-03-17 19:44:21.488 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:21.488 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:44:21.488 -07 000000462 INF: FPGA: Recv ZPIEZORD 26335
17-03-17 19:44:21.498 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:21.498 -07 000000429 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.517 V. Piezo Error = -8.9 V.
17-03-17 19:44:21.498 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30381 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30380 (-134.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30378 (-134.7 uncal um), Max = 30388 (-134.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:44:21.498 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30381, posNoise = 7, negNoise = 3
17-03-17 19:44:21.498 -07 000000429 INF: Z Motor: After move to -0.135496, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:44:21.498 -07 000000429 INF: Z Motor: Settle wait time = 1445 ms, measure time = 104 ms (allowed 150 ms), total time = 1549 ms
17-03-17 19:44:21.498 -07 000000429 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:44:21.548 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 19:44:21.548 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:44:21.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:44:21.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:44:21.548 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:44:21.548 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:44:21.548 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:44:21.548 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:44:21.548 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:44:21.548 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:44:21.558 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:44:21.558 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:44:21.568 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 19:44:21.568 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 19:44:21.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:44:21.618 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 19:44:21.718 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:44:21.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:44:21.818 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 19:44:21.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 19:44:21.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:44:21.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1162196864, 0x0, 559484976) start.
17-03-17 19:44:21.848 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:44:21.858 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 19:44:21.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:44:21.878 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 4.024884,
17-03-17 19:44:21.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1162196864, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 19:44:21.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:21.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:44:21.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 19:44:21.958 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:44:21.958 -07 000000462 INF: Autofocus start
17-03-17 19:44:21.958 -07 000000462 INF: MeasureProfile start
17-03-17 19:44:21.958 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:44:21.968 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:44:21.968 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:44:21.968 -07 000000462 INF: MeasureProfile done
17-03-17 19:44:21.968 -07 000000462 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:44:21.968 -07 000000462 INF: Autofocus finished
17-03-17 19:44:22.168 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:44:22.168 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:44:22.178 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135497341089975. ----------
17-03-17 19:44:22.178 -07 000000610 INF: Cycle	29	Tile	16	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:44:22.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28094, sync = True, waitForSettling = True)
17-03-17 19:44:22.178 -07 000000610 INF: Z Motor: Moving to -0.128606 mm, started at -0.135497 mm, distance = 6.89 um
17-03-17 19:44:22.178 -07 000000610 INF: FPGA: Xmit ZDACW 28094\n [Z Motor]
17-03-17 19:44:22.178 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:44:22.188 -07 000000610 INF: FPGA: 'ZDACW 28094' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:44:22.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:44:22.188 -07 000000551 INF: FPGA: Recv ZDACR 28094
17-03-17 19:44:22.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:22.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:44:22.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:22.348 -07 000000482 INF: FPGA: Recv ZSGSRD 29311
17-03-17 19:44:22.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:22.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:22.358 -07 000000569 INF: FPGA: Recv ZSGSRD 29309
17-03-17 19:44:22.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:22.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:22.388 -07 000000561 INF: FPGA: Recv ZSGSRD 29309
17-03-17 19:44:22.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:44:22.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:22.398 -07 000000486 INF: FPGA: Recv ZSGSRD 29313
17-03-17 19:44:22.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:22.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:22.418 -07 000000429 INF: FPGA: Recv ZSGSRD 29314
17-03-17 19:44:22.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:44:22.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:22.428 -07 000000431 INF: FPGA: Recv ZSGSRD 29308
17-03-17 19:44:22.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:22.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:22.448 -07 000000429 INF: FPGA: Recv ZSGSRD 29312
17-03-17 19:44:22.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:44:22.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:22.458 -07 000000541 INF: FPGA: Recv ZSGSRD 29308
17-03-17 19:44:22.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:22.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:22.468 -07 000000618 INF: FPGA: Recv ZSGSRD 29312
17-03-17 19:44:22.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:22.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:22.478 -07 000000593 INF: FPGA: Recv ZSGSRD 29304
17-03-17 19:44:22.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:22.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:44:22.488 -07 000000478 INF: FPGA: Recv ZPIEZORD 24935
17-03-17 19:44:22.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:22.498 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.287 V. Piezo Error = -9.6 V.
17-03-17 19:44:22.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29310 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29310 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29304 (-127.8 uncal um), Max = 29314 (-127.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:44:22.498 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29310, posNoise = 4, negNoise = 6
17-03-17 19:44:22.498 -07 000000610 INF: Z Motor: After move to -0.128606, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:44:22.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 317 ms)
17-03-17 19:44:22.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:44:22.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:44:22.498 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:44:22.498 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:44:22.498 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:44:22.498 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:44:22.498 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:44:22.498 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:44:22.498 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:44:22.498 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:44:22.498 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:44:22.498 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:44:22.508 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:44:22.508 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:44:22.508 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:44:22.508 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:44:22.508 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:44:22.508 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:44:22.508 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:44:22.508 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:44:22.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 28271 150\n [Camera]
17-03-17 19:44:22.718 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 19:44:23.118 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:44:23.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:44:23.118 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:44:23.118 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:44:23.118 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:44:23.118 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:44:23.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:44:23.128 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:44:23.128 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:44:23.128 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:44:23.318 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28271 789
17-03-17 19:44:23.458 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:44:23.498 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:44:23.498 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:44:23.498 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:23.498 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:44:23.498 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:44:23.498 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:23.508 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:44:23.508 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:44:23.508 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:44:23.518 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:44:23.658 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:44:23.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:44:23.658 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:44:23.658 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:44:23.658 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:44:23.658 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:44:23.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:44:23.658 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:44:23.658 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:44:23.658 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:44:23.848 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:44:23.848 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:44:23.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 28271 150' command took 2 ms to send, 1325 ms to get response, and 1333 ms overall
17-03-17 19:44:23.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:44:23.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128617009886149. ------
17-03-17 19:44:23.968 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13524 mm
17-03-17 19:44:23.968 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:44:23.968 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:44:23.968 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:44:23.968 -07 000000438 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 19:44:23.968 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:44:23.968 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29542, sync = True, waitForSettling = False)
17-03-17 19:44:23.968 -07 000000618 INF: Z Motor: Moving to -0.135235 mm, started at -0.128617 mm, distance = -6.62 um
17-03-17 19:44:23.978 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:44:23.978 -07 000000618 INF: FPGA: Xmit ZDACW 29542\n [Z Motor]
17-03-17 19:44:23.978 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:44:23.988 -07 000000618 INF: FPGA: 'ZDACW 29542' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:23.988 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:23.988 -07 000000541 INF: FPGA: Recv YRDPOS 148174
17-03-17 19:44:23.998 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:44:23.998 -07 000000438 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:23.998 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:44:23.998 -07 000000438 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:44:23.998 -07 000000438 INF: Y Motor: Moving 1347 steps-26
17-03-17 19:44:24.008 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:44:24.008 -07 000000424 INF: FPGA: Recv ZDACR 29542
17-03-17 19:44:24.018 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:44:24.018 -07 000000618 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 19:44:24.018 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:44:24.048 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:44:24.048 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:44:24.048 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:24.048 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 19:44:24.048 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:44:24.048 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:24.058 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:44:24.058 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:44:24.058 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:44:24.058 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:44:24.198 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:44:24.198 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 19:44:24.388 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 19:44:24.388 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 19:44:24.428 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:24.428 -07 000000547 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:44:24.438 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:44:24.438 -07 000000438 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:24.438 -07 000000438 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 19:44:24.438 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.843 mm, average velocity = 2.155 mm/sec
17-03-17 19:44:25.388 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:25.388 -07 000000547 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:44:25.398 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:25.398 -07 000000438 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:25.418 -07 000000438 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:44:25.418 -07 000000438 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:44:25.418 -07 000000438 INF: Y Motor: Moved to 73.1768 after 1445 ms (table move)
17-03-17 19:44:25.418 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135235 mm (DAC = 29542)
17-03-17 19:44:25.418 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:25.418 -07 000000551 INF: FPGA: Recv ZSGSRD 30344
17-03-17 19:44:25.428 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:44:25.428 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:25.428 -07 000000482 INF: FPGA: Recv ZSGSRD 30341
17-03-17 19:44:25.438 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:25.438 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:25.438 -07 000000429 INF: FPGA: Recv ZSGSRD 30339
17-03-17 19:44:25.448 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:25.448 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:25.448 -07 000000626 INF: FPGA: Recv ZSGSRD 30347
17-03-17 19:44:25.458 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:25.458 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:25.458 -07 000000593 INF: FPGA: Recv ZSGSRD 30344
17-03-17 19:44:25.468 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:25.468 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:25.468 -07 000000551 INF: FPGA: Recv ZSGSRD 30345
17-03-17 19:44:25.478 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:25.478 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:25.478 -07 000000424 INF: FPGA: Recv ZSGSRD 30343
17-03-17 19:44:25.488 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:25.488 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:25.488 -07 000000618 INF: FPGA: Recv ZSGSRD 30339
17-03-17 19:44:25.498 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:25.498 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:25.498 -07 000000626 INF: FPGA: Recv ZSGSRD 30334
17-03-17 19:44:25.508 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:25.508 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:25.508 -07 000000382 INF: FPGA: Recv ZSGSRD 30334
17-03-17 19:44:25.518 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:25.518 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:44:25.518 -07 000000551 INF: FPGA: Recv ZPIEZORD 26305
17-03-17 19:44:25.528 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:25.528 -07 000000476 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.508 V. Piezo Error = -8.9 V.
17-03-17 19:44:25.528 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30341 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30342 (-134.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30334 (-134.4 uncal um), Max = 30347 (-134.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:44:25.528 -07 000000476 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30341, posNoise = 6, negNoise = 7
17-03-17 19:44:25.528 -07 000000476 INF: Z Motor: After move to -0.135235, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:44:25.528 -07 000000476 INF: Z Motor: Settle wait time = 1447 ms, measure time = 104 ms (allowed 150 ms), total time = 1551 ms
17-03-17 19:44:25.528 -07 000000476 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:44:25.578 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 19:44:25.578 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:44:25.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:44:25.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:44:25.578 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:44:25.578 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:44:25.578 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:44:25.578 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:44:25.578 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:44:25.578 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:44:25.588 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:44:25.588 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:44:25.588 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:44:25.588 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 19:44:25.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:44:25.638 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:44:25.838 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:44:25.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:44:25.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:44:25.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:44:25.878 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:44:25.878 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 19:44:25.878 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 19:44:25.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 19:44:25.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:25.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:44:25.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 19:44:25.978 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:44:25.978 -07 000000382 INF: Autofocus start
17-03-17 19:44:25.978 -07 000000382 INF: MeasureProfile start
17-03-17 19:44:25.978 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:44:25.988 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:44:25.988 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:44:25.998 -07 000000382 INF: MeasureProfile done
17-03-17 19:44:25.998 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:44:25.998 -07 000000382 INF: Autofocus finished
17-03-17 19:44:26.188 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:44:26.188 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:44:26.188 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.135240372604304. ----------
17-03-17 19:44:26.188 -07 000000610 INF: Cycle	29	Tile	17	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:44:26.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28050, sync = True, waitForSettling = True)
17-03-17 19:44:26.198 -07 000000610 INF: Z Motor: Moving to -0.128405 mm, started at -0.135240 mm, distance = 6.84 um
17-03-17 19:44:26.198 -07 000000610 INF: FPGA: Xmit ZDACW 28050\n [Z Motor]
17-03-17 19:44:26.198 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:44:26.208 -07 000000610 INF: FPGA: 'ZDACW 28050' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:44:26.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:44:26.208 -07 000000429 INF: FPGA: Recv ZDACR 28050
17-03-17 19:44:26.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:26.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:44:26.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:26.368 -07 000000424 INF: FPGA: Recv ZSGSRD 29276
17-03-17 19:44:26.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:26.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:26.378 -07 000000593 INF: FPGA: Recv ZSGSRD 29284
17-03-17 19:44:26.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:26.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:26.388 -07 000000626 INF: FPGA: Recv ZSGSRD 29277
17-03-17 19:44:26.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:26.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:26.398 -07 000000569 INF: FPGA: Recv ZSGSRD 29273
17-03-17 19:44:26.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:26.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:26.408 -07 000000561 INF: FPGA: Recv ZSGSRD 29282
17-03-17 19:44:26.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:26.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:26.418 -07 000000501 INF: FPGA: Recv ZSGSRD 29283
17-03-17 19:44:26.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:26.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:26.428 -07 000000462 INF: FPGA: Recv ZSGSRD 29275
17-03-17 19:44:26.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:26.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:26.438 -07 000000476 INF: FPGA: Recv ZSGSRD 29279
17-03-17 19:44:26.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:26.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:26.448 -07 000000569 INF: FPGA: Recv ZSGSRD 29275
17-03-17 19:44:26.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:26.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:26.458 -07 000000429 INF: FPGA: Recv ZSGSRD 29283
17-03-17 19:44:26.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:26.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:44:26.468 -07 000000541 INF: FPGA: Recv ZPIEZORD 24925
17-03-17 19:44:26.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:26.478 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.280 V. Piezo Error = -9.6 V.
17-03-17 19:44:26.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29279 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29278 (-127.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29273 (-127.6 uncal um), Max = 29284 (-127.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:44:26.478 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29279, posNoise = 5, negNoise = 6
17-03-17 19:44:26.478 -07 000000610 INF: Z Motor: After move to -0.128405, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:44:26.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:44:26.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:44:26.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:44:26.478 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:44:26.478 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:44:26.478 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:44:26.478 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:44:26.478 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:44:26.478 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:44:26.478 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:44:26.478 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:44:26.478 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:44:26.478 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:44:26.488 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:44:26.488 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:44:26.488 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:44:26.488 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:44:26.498 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:44:26.498 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:44:26.498 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:44:26.498 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:44:26.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 28226 150\n [Camera]
17-03-17 19:44:26.698 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:44:26.718 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:44:26.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:44:27.108 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:44:27.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:44:27.108 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:44:27.108 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:44:27.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:44:27.108 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:44:27.108 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:44:27.108 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:44:27.108 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:44:27.108 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:44:27.238 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.990831,
17-03-17 19:44:27.298 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28226 789
17-03-17 19:44:27.448 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:44:27.498 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 19:44:27.498 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:44:27.498 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:27.508 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 19:44:27.508 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:44:27.508 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:27.508 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:44:27.508 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:44:27.508 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:44:27.518 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 19:44:27.638 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:44:27.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:44:27.638 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:44:27.648 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:44:27.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:44:27.648 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:44:27.648 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:44:27.648 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:44:27.648 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:44:27.648 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:44:27.828 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1326
17-03-17 19:44:27.828 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:44:27.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 28226 150' command took 2 ms to send, 1329 ms to get response, and 1333 ms overall
17-03-17 19:44:27.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:44:27.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.128417859309754. ------
17-03-17 19:44:27.958 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:44:27.958 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13482 mm
17-03-17 19:44:27.958 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:44:27.958 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:44:27.958 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29452, sync = True, waitForSettling = False)
17-03-17 19:44:27.958 -07 000000501 INF: Z Motor: Moving to -0.134823 mm, started at -0.128418 mm, distance = -6.40 um
17-03-17 19:44:27.958 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:44:27.958 -07 000000429 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 19:44:27.968 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:27.968 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:27.968 -07 000000561 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:44:27.978 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:44:27.978 -07 000000429 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:27.978 -07 000000429 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:44:27.978 -07 000000429 INF: Y Motor: Moving 1353 steps-32
17-03-17 19:44:27.978 -07 000000501 INF: FPGA: Xmit ZDACW 29452\n [Z Motor]
17-03-17 19:44:27.978 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:44:27.988 -07 000000501 INF: FPGA: 'ZDACW 29452' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:44:27.988 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:44:27.998 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:44:28.008 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:44:28.008 -07 000000482 INF: FPGA: Recv ZDACR 29452
17-03-17 19:44:28.018 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:44:28.018 -07 000000501 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 19:44:28.048 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 19:44:28.048 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:44:28.048 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:28.048 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:44:28.048 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:44:28.048 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:28.058 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:44:28.058 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:44:28.058 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 19:44:28.058 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:44:28.188 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:44:28.188 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 19:44:28.368 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:44:28.368 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:44:28.398 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:28.398 -07 000000561 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:44:28.408 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:44:28.408 -07 000000429 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:28.408 -07 000000429 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:44:28.408 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.131 mm/sec
17-03-17 19:44:29.358 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:29.358 -07 000000561 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:44:29.368 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:29.368 -07 000000429 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:29.378 -07 000000429 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:44:29.378 -07 000000429 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:44:29.378 -07 000000429 INF: Y Motor: Moved to 74.0088 after 1420 ms (table move)
17-03-17 19:44:29.378 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134823 mm (DAC = 29452)
17-03-17 19:44:29.378 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:29.388 -07 000000551 INF: FPGA: Recv ZSGSRD 30278
17-03-17 19:44:29.388 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 6 ms to get response, and 6 ms overall
17-03-17 19:44:29.388 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:29.388 -07 000000593 INF: FPGA: Recv ZSGSRD 30272
17-03-17 19:44:29.398 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:44:29.398 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:29.398 -07 000000618 INF: FPGA: Recv ZSGSRD 30268
17-03-17 19:44:29.408 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:29.408 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:29.408 -07 000000551 INF: FPGA: Recv ZSGSRD 30271
17-03-17 19:44:29.418 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:29.418 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:29.418 -07 000000382 INF: FPGA: Recv ZSGSRD 30270
17-03-17 19:44:29.428 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:29.428 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:29.428 -07 000000541 INF: FPGA: Recv ZSGSRD 30270
17-03-17 19:44:29.438 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:29.438 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:29.438 -07 000000438 INF: FPGA: Recv ZSGSRD 30286
17-03-17 19:44:29.448 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:29.448 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:29.448 -07 000000482 INF: FPGA: Recv ZSGSRD 30283
17-03-17 19:44:29.458 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:29.458 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:29.458 -07 000000501 INF: FPGA: Recv ZSGSRD 30275
17-03-17 19:44:29.468 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:29.468 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:29.468 -07 000000382 INF: FPGA: Recv ZSGSRD 30274
17-03-17 19:44:29.478 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:29.478 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:44:29.478 -07 000000541 INF: FPGA: Recv ZPIEZORD 26267
17-03-17 19:44:29.488 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:29.488 -07 000000478 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.494 V. Piezo Error = -8.8 V.
17-03-17 19:44:29.488 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30275 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30273 (-134.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30268 (-134.0 uncal um), Max = 30286 (-134.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:44:29.488 -07 000000478 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30275, posNoise = 11, negNoise = 7
17-03-17 19:44:29.488 -07 000000478 INF: Z Motor: After move to -0.134823, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:44:29.488 -07 000000478 INF: Z Motor: Settle wait time = 1423 ms, measure time = 102 ms (allowed 150 ms), total time = 1525 ms
17-03-17 19:44:29.488 -07 000000478 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 19:44:29.538 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1578 ms
17-03-17 19:44:29.538 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:44:29.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:44:29.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:44:29.538 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:44:29.538 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:44:29.538 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:44:29.538 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:44:29.538 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:44:29.538 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:44:29.548 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:44:29.548 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:44:29.558 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:44:29.558 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:44:29.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:44:29.608 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:44:29.808 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:44:29.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:44:29.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:44:29.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:44:29.838 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:44:29.848 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 19:44:29.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:44:29.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 19:44:29.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:29.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:44:29.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 19:44:29.948 -07 000000593 INF: Autofocus start
17-03-17 19:44:29.948 -07 000000593 INF: MeasureProfile start
17-03-17 19:44:29.948 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:44:29.948 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:44:29.958 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:44:29.958 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:44:29.978 -07 000000593 INF: MeasureProfile done
17-03-17 19:44:29.978 -07 000000593 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:44:29.978 -07 000000593 INF: Autofocus finished
17-03-17 19:44:30.158 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:44:30.158 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 19:44:30.158 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.134816374602948. ----------
17-03-17 19:44:30.168 -07 000000610 INF: Cycle	29	Tile	18	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:44:30.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27976, sync = True, waitForSettling = True)
17-03-17 19:44:30.168 -07 000000610 INF: Z Motor: Moving to -0.128066 mm, started at -0.134816 mm, distance = 6.75 um
17-03-17 19:44:30.168 -07 000000610 INF: FPGA: Xmit ZDACW 27976\n [Z Motor]
17-03-17 19:44:30.168 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:44:30.178 -07 000000610 INF: FPGA: 'ZDACW 27976' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:44:30.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:44:30.178 -07 000000551 INF: FPGA: Recv ZDACR 27976
17-03-17 19:44:30.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:30.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:44:30.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:30.338 -07 000000424 INF: FPGA: Recv ZSGSRD 29229
17-03-17 19:44:30.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:30.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:30.348 -07 000000593 INF: FPGA: Recv ZSGSRD 29224
17-03-17 19:44:30.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:30.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:30.358 -07 000000478 INF: FPGA: Recv ZSGSRD 29225
17-03-17 19:44:30.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:30.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:30.368 -07 000000462 INF: FPGA: Recv ZSGSRD 29224
17-03-17 19:44:30.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:30.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:30.378 -07 000000551 INF: FPGA: Recv ZSGSRD 29225
17-03-17 19:44:30.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:30.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:30.388 -07 000000569 INF: FPGA: Recv ZSGSRD 29226
17-03-17 19:44:30.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:30.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:30.398 -07 000000482 INF: FPGA: Recv ZSGSRD 29225
17-03-17 19:44:30.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:30.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:30.408 -07 000000429 INF: FPGA: Recv ZSGSRD 29221
17-03-17 19:44:30.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:30.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:30.418 -07 000000462 INF: FPGA: Recv ZSGSRD 29229
17-03-17 19:44:30.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:30.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:30.428 -07 000000551 INF: FPGA: Recv ZSGSRD 29220
17-03-17 19:44:30.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:30.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:44:30.438 -07 000000541 INF: FPGA: Recv ZPIEZORD 24917
17-03-17 19:44:30.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:30.448 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.269 V. Piezo Error = -9.5 V.
17-03-17 19:44:30.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29225 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29225 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29220 (-127.3 uncal um), Max = 29229 (-127.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:44:30.448 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29225, posNoise = 4, negNoise = 5
17-03-17 19:44:30.448 -07 000000610 INF: Z Motor: After move to -0.128066, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:44:30.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 19:44:30.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:44:30.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:44:30.448 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:44:30.448 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:44:30.448 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:44:30.448 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:44:30.448 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:44:30.448 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:44:30.448 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:44:30.448 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:44:30.448 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:44:30.448 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:44:30.458 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:44:30.458 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:44:30.458 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:44:30.458 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:44:30.468 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:44:30.468 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:44:30.468 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:44:30.468 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:44:30.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 28153 150\n [Camera]
17-03-17 19:44:30.668 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:44:31.068 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-17 19:44:31.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-17 19:44:31.068 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:44:31.068 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-17 19:44:31.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-17 19:44:31.078 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:44:31.078 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:44:31.078 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:44:31.078 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:44:31.078 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:44:31.258 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28153 789
17-03-17 19:44:31.408 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:44:31.448 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 19:44:31.448 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 19:44:31.448 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:31.448 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:44:31.448 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:44:31.448 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:31.458 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:44:31.458 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:44:31.458 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:44:31.468 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:44:31.608 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:44:31.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:44:31.608 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:44:31.608 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:44:31.608 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 19:44:31.608 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:44:31.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:44:31.608 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:44:31.608 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:44:31.608 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 19:44:31.718 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:44:31.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 28. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:44:31.798 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:44:31.798 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:44:31.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 28153 150' command took 2 ms to send, 1325 ms to get response, and 1332 ms overall
17-03-17 19:44:31.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:44:31.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.128070951854099. ------
17-03-17 19:44:31.808 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:44:31.808 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13448 mm
17-03-17 19:44:31.808 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:44:31.808 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:44:31.808 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:44:31.808 -07 000000501 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 19:44:31.808 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 29377, sync = True, waitForSettling = False)
17-03-17 19:44:31.808 -07 000000547 INF: Z Motor: Moving to -0.134479 mm, started at -0.128071 mm, distance = -6.41 um
17-03-17 19:44:31.818 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:31.818 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:44:31.828 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:31.828 -07 000000438 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:44:31.838 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:44:31.838 -07 000000501 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:31.838 -07 000000501 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:44:31.838 -07 000000501 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:44:31.838 -07 000000547 INF: FPGA: Xmit ZDACW 29377\n [Z Motor]
17-03-17 19:44:31.838 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:44:31.848 -07 000000547 INF: FPGA: 'ZDACW 29377' command took 1 ms to send, 0 ms to get response, and 36 ms overall
17-03-17 19:44:31.848 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:44:31.848 -07 000000561 INF: FPGA: Recv ZDACR 29377
17-03-17 19:44:31.858 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:44:31.858 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:31.858 -07 000000547 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 19:44:31.998 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 19:44:31.998 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:44:31.998 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:31.998 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:44:31.998 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:44:31.998 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:31.998 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:44:32.008 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:44:32.008 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:44:32.008 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:44:32.018 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:44:32.018 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 19:44:32.228 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 19:44:32.228 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:44:32.258 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:32.258 -07 000000438 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:44:32.268 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:32.268 -07 000000501 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:32.268 -07 000000501 INF: Y Motor: Position error before settling (table move) = -40 encoder counts (-0.020 mm)
17-03-17 19:44:32.268 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 19:44:32.598 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.975845,
17-03-17 19:44:33.218 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:33.218 -07 000000541 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:44:33.228 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:33.228 -07 000000501 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:33.238 -07 000000501 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:44:33.238 -07 000000501 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:44:33.238 -07 000000501 INF: Y Motor: Moved to 74.8330 after 1432 ms (table move)
17-03-17 19:44:33.238 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134479 mm (DAC = 29377)
17-03-17 19:44:33.238 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:33.248 -07 000000561 INF: FPGA: Recv ZSGSRD 30222
17-03-17 19:44:33.248 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:44:33.248 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:33.248 -07 000000429 INF: FPGA: Recv ZSGSRD 30236
17-03-17 19:44:33.258 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:44:33.258 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:33.258 -07 000000482 INF: FPGA: Recv ZSGSRD 30228
17-03-17 19:44:33.268 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:44:33.268 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:33.268 -07 000000478 INF: FPGA: Recv ZSGSRD 30224
17-03-17 19:44:33.278 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:44:33.278 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:33.278 -07 000000438 INF: FPGA: Recv ZSGSRD 30222
17-03-17 19:44:33.288 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:33.288 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:33.288 -07 000000626 INF: FPGA: Recv ZSGSRD 30222
17-03-17 19:44:33.298 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:33.298 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:33.298 -07 000000561 INF: FPGA: Recv ZSGSRD 30228
17-03-17 19:44:33.308 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:33.308 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:33.308 -07 000000547 INF: FPGA: Recv ZSGSRD 30225
17-03-17 19:44:33.318 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:33.318 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:33.318 -07 000000478 INF: FPGA: Recv ZSGSRD 30219
17-03-17 19:44:33.328 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:33.328 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:33.328 -07 000000429 INF: FPGA: Recv ZSGSRD 30222
17-03-17 19:44:33.338 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:33.338 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:44:33.338 -07 000000382 INF: FPGA: Recv ZPIEZORD 26228
17-03-17 19:44:33.348 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:33.348 -07 000000424 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.483 V. Piezo Error = -8.8 V.
17-03-17 19:44:33.348 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30225 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30223 (-133.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30219 (-133.7 uncal um), Max = 30236 (-133.8 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:44:33.348 -07 000000424 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30225, posNoise = 11, negNoise = 6
17-03-17 19:44:33.348 -07 000000424 INF: Z Motor: After move to -0.134479, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:44:33.348 -07 000000424 INF: Z Motor: Settle wait time = 1435 ms, measure time = 101 ms (allowed 150 ms), total time = 1536 ms
17-03-17 19:44:33.348 -07 000000424 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 19:44:33.398 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 19:44:33.398 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:44:33.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:44:33.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:44:33.398 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:44:33.398 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:44:33.398 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:44:33.398 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:44:33.398 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:44:33.398 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:44:33.408 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:44:33.408 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:44:33.408 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:44:33.418 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 19:44:33.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:44:33.458 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:44:33.658 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:44:33.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:44:33.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:44:33.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 19:44:33.698 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:44:33.698 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 19:44:33.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 19:44:33.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 19:44:33.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:33.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:44:33.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:44:33.798 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:44:33.798 -07 000000424 INF: Autofocus start
17-03-17 19:44:33.798 -07 000000424 INF: MeasureProfile start
17-03-17 19:44:33.798 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:44:33.808 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:44:33.808 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:44:33.808 -07 000000424 INF: MeasureProfile done
17-03-17 19:44:33.808 -07 000000424 INF: X=-17  Z correction [um]=-0.0861559
17-03-17 19:44:33.808 -07 000000424 INF: Autofocus finished
17-03-17 19:44:34.008 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:44:34.008 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:44:34.008 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.13449516399586. ----------
17-03-17 19:44:34.018 -07 000000610 INF: Cycle	29	Tile	19	Exposure Settings		A	404	G	194	T	194	C	404
17-03-17 19:44:34.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27871, sync = True, waitForSettling = True)
17-03-17 19:44:34.018 -07 000000610 INF: Z Motor: Moving to -0.127585 mm, started at -0.134495 mm, distance = 6.91 um
17-03-17 19:44:34.018 -07 000000610 INF: FPGA: Xmit ZDACW 27871\n [Z Motor]
17-03-17 19:44:34.018 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:44:34.028 -07 000000610 INF: FPGA: 'ZDACW 27871' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:44:34.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:44:34.028 -07 000000482 INF: FPGA: Recv ZDACR 27871
17-03-17 19:44:34.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:34.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:44:34.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:34.188 -07 000000593 INF: FPGA: Recv ZSGSRD 29147
17-03-17 19:44:34.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:34.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:34.198 -07 000000547 INF: FPGA: Recv ZSGSRD 29152
17-03-17 19:44:34.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:34.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:34.208 -07 000000438 INF: FPGA: Recv ZSGSRD 29155
17-03-17 19:44:34.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:34.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:34.218 -07 000000486 INF: FPGA: Recv ZSGSRD 29144
17-03-17 19:44:34.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:34.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:34.228 -07 000000626 INF: FPGA: Recv ZSGSRD 29151
17-03-17 19:44:34.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:34.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:34.238 -07 000000486 INF: FPGA: Recv ZSGSRD 29144
17-03-17 19:44:34.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:34.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:34.248 -07 000000551 INF: FPGA: Recv ZSGSRD 29148
17-03-17 19:44:34.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:34.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:34.258 -07 000000501 INF: FPGA: Recv ZSGSRD 29152
17-03-17 19:44:34.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:34.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:34.268 -07 000000569 INF: FPGA: Recv ZSGSRD 29151
17-03-17 19:44:34.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:34.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:44:34.278 -07 000000429 INF: FPGA: Recv ZSGSRD 29148
17-03-17 19:44:34.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:34.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:44:34.288 -07 000000431 INF: FPGA: Recv ZPIEZORD 24812
17-03-17 19:44:34.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:34.298 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.253 V. Piezo Error = -9.5 V.
17-03-17 19:44:34.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29149 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29150 (-126.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29144 (-126.8 uncal um), Max = 29155 (-126.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:44:34.298 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29149, posNoise = 6, negNoise = 5
17-03-17 19:44:34.298 -07 000000610 INF: Z Motor: After move to -0.127585, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:44:34.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:44:34.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:44:34.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:44:34.298 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:44:34.298 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:44:34.298 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:44:34.298 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:44:34.298 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:44:34.298 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:44:34.298 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:44:34.298 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:44:34.298 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:44:34.298 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:44:34.308 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:44:34.308 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:44:34.308 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:44:34.308 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:44:34.308 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:44:34.308 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:44:34.308 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:44:34.308 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:44:34.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 404 404 194 194 28047 150\n [Camera]
17-03-17 19:44:34.518 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:44:34.918 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-17 19:44:34.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-17 19:44:34.918 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:44:34.918 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:44:34.918 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:44:34.928 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-17 19:44:34.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-17 19:44:34.928 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:44:34.928 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:44:34.928 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:44:35.108 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28047 789
17-03-17 19:44:35.258 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-17 19:44:35.308 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:44:35.308 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 19:44:35.308 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:44:35.308 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:35.308 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:44:35.308 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:35.318 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:44:35.318 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:44:35.318 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:44:35.328 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:44:35.458 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-17 19:44:35.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-17 19:44:35.458 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:44:35.458 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:44:35.458 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:44:35.458 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-17 19:44:35.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-17 19:44:35.458 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:44:35.458 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:44:35.458 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:44:35.648 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-17 19:44:35.648 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:44:35.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 404 404 194 194 28047 150' command took 2 ms to send, 1324 ms to get response, and 1333 ms overall
17-03-17 19:44:35.858 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 19:44:35.858 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:44:35.858 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:35.868 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 19:44:35.868 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:44:35.868 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:44:35.868 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:44:35.868 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:44:35.868 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 19:44:35.868 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:44:35.878 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 19:44:35.908 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 19:44:35.908 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:44:35.958 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-17 19:44:36.088 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 19:44:36.088 -07 000000610 INF: Imaging Cycle 29: ScanTilesCommand Cycle 29 time end. Duration was 158212 ms.
17-03-17 19:44:36.088 -07 000000610 INF: =================== Cycle #29 ===================
17-03-17 19:44:36.088 -07 000000610 INF: ===================  ===================
17-03-17 19:44:36.088 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:44:36.088 -07 000000431 INF: FPGA: Recv EXLED1ADCR 27
17-03-17 19:44:36.098 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:44:36.098 -07 000000501 INF: GreenLED: Using Green data: Photodiode ADC 27 --> 0.0 mW (old method), or 2.0 mW (new method). Difference = 2.0 mW
17-03-17 19:44:36.098 -07 000000501 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 29, FrontChillerTemperature: 3.975845, FrontChillerHeatSinkTemperature: 0.294515, AmbientTemperature: 18.93289, FlowCellCompartmentTemperature: 21.99399, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.71051, GreenLEDSensorTemperature: 26.38995, PhotodiodePowerAdcGreen: 27, PhotodiodePowerMwGreen: 2.018235
17-03-17 19:44:36.118 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.