17-03-17 17:29:56.298 -07 000000610 INF: =================== Cycle #2 ===================
17-03-17 17:29:56.298 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 17:29:56.298 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-17 17:29:56.298 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:56.298 -07 000000462 INF: FPGA: Recv YRDPOS 153256
17-03-17 17:29:56.308 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:29:56.308 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:56.308 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 17:29:56.308 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 17:29:56.308 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 17:29:56.308 -07 000000618 INF: FPGA: Recv RFID1BLKWR
17-03-17 17:29:56.308 -07 000000442 INF: FPGA: 'RFID1BLKWR 0 20 00AC19D0' command took 1 ms to send, 63 ms to get response, and 68 ms overall
17-03-17 17:29:56.318 -07 000000442 INF: FPGA: Xmit RFID1BLKRD 20\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:56.378 -07 000000551 INF: FPGA: Recv RFID1BLKRD 0 AC19D0
17-03-17 17:29:56.378 -07 000000442 INF: FPGA: 'RFID1BLKRD 20' command took 0 ms to send, 54 ms to get response, and 71 ms overall
17-03-17 17:29:56.378 -07 000000442 INF: FPGA: Xmit RFID1BLKWR 0 21 6899CA5F\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:56.418 -07 000000462 INF: FPGA: Recv YMVTO 154377 871
17-03-17 17:29:56.418 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 115 ms overall
17-03-17 17:29:56.418 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 17:29:56.418 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 17:29:56.418 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.729 mm/sec
17-03-17 17:29:56.448 -07 000000462 INF: FPGA: Recv RFID1BLKWR
17-03-17 17:29:56.448 -07 000000442 INF: FPGA: 'RFID1BLKWR 0 21 6899CA5F' command took 1 ms to send, 64 ms to get response, and 70 ms overall
17-03-17 17:29:56.448 -07 000000442 INF: FPGA: Xmit RFID1BLKRD 21\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:56.498 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:29:56.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:29:56.508 -07 000000475 INF: FPGA: Recv RFID1BLKRD 0 6899CA5F
17-03-17 17:29:56.518 -07 000000442 INF: FPGA: 'RFID1BLKRD 21' command took 0 ms to send, 59 ms to get response, and 64 ms overall
17-03-17 17:29:56.518 -07 000000442 INF: FPGA: Xmit RFID1BLKWR 0 22 0CD12991\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:56.588 -07 000000475 INF: FPGA: Recv RFID1BLKWR
17-03-17 17:29:56.588 -07 000000442 INF: FPGA: 'RFID1BLKWR 0 22 0CD12991' command took 1 ms to send, 61 ms to get response, and 71 ms overall
17-03-17 17:29:56.588 -07 000000442 INF: FPGA: Xmit RFID1BLKRD 22\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:56.648 -07 000000429 INF: FPGA: Recv RFID1BLKRD 0 CD12991
17-03-17 17:29:56.648 -07 000000442 INF: FPGA: 'RFID1BLKRD 22' command took 0 ms to send, 55 ms to get response, and 64 ms overall
17-03-17 17:29:56.648 -07 000000442 INF: FPGA: Xmit RFID1BLKWR 0 23 3833304D\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:56.718 -07 000000462 INF: FPGA: Recv RFID1BLKWR
17-03-17 17:29:56.718 -07 000000442 INF: FPGA: 'RFID1BLKWR 0 23 3833304D' command took 1 ms to send, 64 ms to get response, and 68 ms overall
17-03-17 17:29:56.718 -07 000000442 INF: FPGA: Xmit RFID1BLKRD 23\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:56.788 -07 000000462 INF: FPGA: Recv RFID1BLKRD 0 3833304D
17-03-17 17:29:56.788 -07 000000442 INF: FPGA: 'RFID1BLKRD 23' command took 0 ms to send, 62 ms to get response, and 67 ms overall
17-03-17 17:29:56.788 -07 000000442 INF: FPGA: Xmit RFID1BLKWR 0 24 00003431\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:56.858 -07 000000382 INF: FPGA: Recv RFID1BLKWR
17-03-17 17:29:56.858 -07 000000442 INF: FPGA: 'RFID1BLKWR 0 24 00003431' command took 1 ms to send, 60 ms to get response, and 68 ms overall
17-03-17 17:29:56.858 -07 000000442 INF: FPGA: Xmit RFID1BLKRD 24\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:56.918 -07 000000502 INF: FPGA: Recv RFID1BLKRD 0 3431
17-03-17 17:29:56.918 -07 000000442 INF: FPGA: 'RFID1BLKRD 24' command took 0 ms to send, 55 ms to get response, and 64 ms overall
17-03-17 17:29:56.918 -07 000000442 INF: FPGA: Xmit RFID1BLKWR 0 25 00000000\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:56.988 -07 000000502 INF: FPGA: Recv RFID1BLKWR
17-03-17 17:29:56.988 -07 000000442 INF: FPGA: 'RFID1BLKWR 0 25 00000000' command took 1 ms to send, 63 ms to get response, and 68 ms overall
17-03-17 17:29:56.988 -07 000000442 INF: FPGA: Xmit RFID1BLKRD 25\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:57.048 -07 000000475 INF: FPGA: Recv RFID1BLKRD 0 0
17-03-17 17:29:57.048 -07 000000442 INF: FPGA: 'RFID1BLKRD 25' command took 0 ms to send, 57 ms to get response, and 63 ms overall
17-03-17 17:29:57.048 -07 000000442 INF: FPGA: Xmit RFID1BLKWR 0 26 00000000\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:57.118 -07 000000475 INF: FPGA: Recv RFID1BLKWR
17-03-17 17:29:57.118 -07 000000442 INF: FPGA: 'RFID1BLKWR 0 26 00000000' command took 1 ms to send, 66 ms to get response, and 68 ms overall
17-03-17 17:29:57.118 -07 000000442 INF: FPGA: Xmit RFID1BLKRD 26\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:57.188 -07 000000502 INF: FPGA: Recv RFID1BLKRD 0 0
17-03-17 17:29:57.188 -07 000000442 INF: FPGA: 'RFID1BLKRD 26' command took 0 ms to send, 61 ms to get response, and 64 ms overall
17-03-17 17:29:57.188 -07 000000442 INF: FPGA: Xmit RFID1BLKWR 0 27 00000000\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:57.248 -07 000000618 INF: FPGA: Recv RFID1BLKWR
17-03-17 17:29:57.248 -07 000000442 INF: FPGA: 'RFID1BLKWR 0 27 00000000' command took 1 ms to send, 59 ms to get response, and 68 ms overall
17-03-17 17:29:57.248 -07 000000442 INF: FPGA: Xmit RFID1BLKRD 27\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:57.318 -07 000000475 INF: FPGA: Recv RFID1BLKRD 0 0
17-03-17 17:29:57.318 -07 000000442 INF: FPGA: 'RFID1BLKRD 27' command took 0 ms to send, 53 ms to get response, and 63 ms overall
17-03-17 17:29:57.318 -07 000000442 INF: FPGA: Xmit RFID1BLKWR 0 19 00000002\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:57.388 -07 000000382 INF: FPGA: Recv RFID1BLKWR
17-03-17 17:29:57.388 -07 000000442 INF: FPGA: 'RFID1BLKWR 0 19 00000002' command took 1 ms to send, 63 ms to get response, and 68 ms overall
17-03-17 17:29:57.388 -07 000000442 INF: FPGA: Xmit RFID1BLKRD 19\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:57.448 -07 000000462 INF: FPGA: Recv RFID1BLKRD 0 2
17-03-17 17:29:57.448 -07 000000442 INF: FPGA: 'RFID1BLKRD 19' command took 0 ms to send, 57 ms to get response, and 63 ms overall
17-03-17 17:29:57.448 -07 000000442 INF: FlowcellCartridgeRFIDSensor: RFID Tag Data:
 Tag ID (UID) = 0xE00401503C7DF5B4
 Layout Version = 1
 Serial Number = 000000000-B2K79
 Expiration Date = 10/27/2017
 Lot Number = 20113946
 Part Number = 15028382
 Part Number Revision = B
 Number Of Cycles = 300
 Is Paired End = True
 Reagent Cartridge Version = 2
 Number of Tiles = 28
 Number of Runs = 2
 Signature = 48 bytes: AB-C4-3E-7A-37-09-AA-5C-F2-BA-02-1C-2C-2A-26-32-6B-CD-E2-C6-F6-96-B1-13-6C-9B-4F-A9-2A-AF-A8-19-8A-03-40-76-55-95-C2-63-20-6A-8F-0D-04-8E-2F-65
 Signature Verified = True

17-03-17 17:29:57.448 -07 000000442 INF: FlowcellCartridgeRFIDSensor: RFID Unsigned Tag Data:
 Layout Version = 2
 Lockout = False
 QcHold = False
 RunID_RunDate = 3/17/2017
 RunID_RunNumber = 172
 RunID_ReagentSerialNumber = MS4875354-600V3
 RunID_InstrumentSerialNumber = M03814

17-03-17 17:29:57.448 -07 000000442 INF: FPGA: Xmit RFID1BLKLK 0 20\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:57.518 -07 000000480 INF: FPGA: Recv RFID1BLKLK
17-03-17 17:29:57.518 -07 000000442 INF: FPGA: 'RFID1BLKLK 0 20' command took 1 ms to send, 66 ms to get response, and 68 ms overall
17-03-17 17:29:57.518 -07 000000442 INF: FPGA: Xmit RFID1BLKRD 20\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:57.588 -07 000000429 INF: FPGA: Recv RFID1BLKRD 1 AC19D0
17-03-17 17:29:57.588 -07 000000442 INF: FPGA: 'RFID1BLKRD 20' command took 0 ms to send, 61 ms to get response, and 65 ms overall
17-03-17 17:29:57.588 -07 000000442 INF: FPGA: Xmit RFID1BLKLK 0 21\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:57.658 -07 000000462 INF: FPGA: Recv RFID1BLKLK
17-03-17 17:29:57.658 -07 000000442 INF: FPGA: 'RFID1BLKLK 0 21' command took 1 ms to send, 60 ms to get response, and 68 ms overall
17-03-17 17:29:57.658 -07 000000442 INF: FPGA: Xmit RFID1BLKRD 21\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:57.718 -07 000000462 INF: FPGA: Recv RFID1BLKRD 1 6899CA5F
17-03-17 17:29:57.718 -07 000000442 INF: FPGA: 'RFID1BLKRD 21' command took 0 ms to send, 55 ms to get response, and 64 ms overall
17-03-17 17:29:57.718 -07 000000442 INF: FPGA: Xmit RFID1BLKLK 0 22\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:57.788 -07 000000502 INF: FPGA: Recv RFID1BLKLK
17-03-17 17:29:57.788 -07 000000442 INF: FPGA: 'RFID1BLKLK 0 22' command took 1 ms to send, 64 ms to get response, and 68 ms overall
17-03-17 17:29:57.788 -07 000000442 INF: FPGA: Xmit RFID1BLKRD 22\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:57.848 -07 000000502 INF: FPGA: Recv RFID1BLKRD 1 CD12991
17-03-17 17:29:57.848 -07 000000442 INF: FPGA: 'RFID1BLKRD 22' command took 0 ms to send, 58 ms to get response, and 64 ms overall
17-03-17 17:29:57.848 -07 000000442 INF: FPGA: Xmit RFID1BLKLK 0 23\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:57.918 -07 000000551 INF: FPGA: Recv RFID1BLKLK
17-03-17 17:29:57.918 -07 000000442 INF: FPGA: 'RFID1BLKLK 0 23' command took 1 ms to send, 57 ms to get response, and 68 ms overall
17-03-17 17:29:57.918 -07 000000442 INF: FPGA: Xmit RFID1BLKRD 23\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:57.988 -07 000000429 INF: FPGA: Recv RFID1BLKRD 1 3833304D
17-03-17 17:29:57.988 -07 000000442 INF: FPGA: 'RFID1BLKRD 23' command took 0 ms to send, 65 ms to get response, and 67 ms overall
17-03-17 17:29:57.988 -07 000000442 INF: FPGA: Xmit RFID1BLKLK 0 24\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:58.058 -07 000000502 INF: FPGA: Recv RFID1BLKLK
17-03-17 17:29:58.058 -07 000000442 INF: FPGA: 'RFID1BLKLK 0 24' command took 1 ms to send, 64 ms to get response, and 68 ms overall
17-03-17 17:29:58.058 -07 000000442 INF: FPGA: Xmit RFID1BLKRD 24\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:58.118 -07 000000480 INF: FPGA: Recv RFID1BLKRD 1 3431
17-03-17 17:29:58.118 -07 000000442 INF: FPGA: 'RFID1BLKRD 24' command took 0 ms to send, 58 ms to get response, and 64 ms overall
17-03-17 17:29:58.118 -07 000000442 INF: FPGA: Xmit RFID1BLKLK 0 25\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:58.188 -07 000000480 INF: FPGA: Recv RFID1BLKLK
17-03-17 17:29:58.188 -07 000000442 INF: FPGA: 'RFID1BLKLK 0 25' command took 1 ms to send, 59 ms to get response, and 70 ms overall
17-03-17 17:29:58.188 -07 000000442 INF: FPGA: Xmit RFID1BLKRD 25\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:58.258 -07 000000429 INF: FPGA: Recv RFID1BLKRD 1 0
17-03-17 17:29:58.258 -07 000000442 INF: FPGA: 'RFID1BLKRD 25' command took 0 ms to send, 62 ms to get response, and 63 ms overall
17-03-17 17:29:58.258 -07 000000442 INF: FPGA: Xmit RFID1BLKLK 0 26\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:58.328 -07 000000382 INF: FPGA: Recv RFID1BLKLK
17-03-17 17:29:58.328 -07 000000442 INF: FPGA: 'RFID1BLKLK 0 26' command took 1 ms to send, 64 ms to get response, and 71 ms overall
17-03-17 17:29:58.328 -07 000000442 INF: FPGA: Xmit RFID1BLKRD 26\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:58.388 -07 000000429 INF: FPGA: Recv RFID1BLKRD 1 0
17-03-17 17:29:58.388 -07 000000442 INF: FPGA: 'RFID1BLKRD 26' command took 0 ms to send, 57 ms to get response, and 63 ms overall
17-03-17 17:29:58.388 -07 000000442 INF: FPGA: Xmit RFID1BLKLK 0 27\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:58.458 -07 000000382 INF: FPGA: Recv RFID1BLKLK
17-03-17 17:29:58.458 -07 000000442 INF: FPGA: 'RFID1BLKLK 0 27' command took 1 ms to send, 66 ms to get response, and 68 ms overall
17-03-17 17:29:58.458 -07 000000442 INF: FPGA: Xmit RFID1BLKRD 27\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:58.528 -07 000000480 INF: FPGA: Recv RFID1BLKRD 1 0
17-03-17 17:29:58.528 -07 000000442 INF: FPGA: 'RFID1BLKRD 27' command took 0 ms to send, 60 ms to get response, and 63 ms overall
17-03-17 17:29:58.528 -07 000000442 INF: FlowcellCartridgeRFIDSensor: Unsigned data uses blocks 19 - 27. The following unsigned blocks are locked:
  Block 20 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 21 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 22 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 23 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 24 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 25 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 26 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 27 (Run ID Date/Instrument/Run#/Reagent SN)

17-03-17 17:29:58.528 -07 000000442 INF: PR2RFIDSensor: Saving Run ID to RFID tag: InstrumentID 'M03814', Run Number 172, Reagent Serial Number 'MS4875354-600V3'
17-03-17 17:29:58.528 -07 000000442 INF: FPGA: Xmit RFID3BLKWR 1 20 00AC19D0\n [PR2RFIDSensor]
17-03-17 17:29:58.608 -07 000000382 INF: FPGA: Recv RFID3BLKWR
17-03-17 17:29:58.608 -07 000000442 INF: FPGA: 'RFID3BLKWR 1 20 00AC19D0' command took 1 ms to send, 75 ms to get response, and 84 ms overall
17-03-17 17:29:58.608 -07 000000442 INF: FPGA: Xmit RFID3BLKRD 20\n [PR2RFIDSensor]
17-03-17 17:29:58.678 -07 000000429 INF: FPGA: Recv RFID3BLKRD 0 AC19D0
17-03-17 17:29:58.678 -07 000000442 INF: FPGA: 'RFID3BLKRD 20' command took 0 ms to send, 60 ms to get response, and 64 ms overall
17-03-17 17:29:58.678 -07 000000442 INF: FPGA: Xmit RFID3BLKWR 1 21 6899CA5F\n [PR2RFIDSensor]
17-03-17 17:29:58.758 -07 000000480 INF: FPGA: Recv RFID3BLKWR
17-03-17 17:29:58.758 -07 000000442 INF: FPGA: 'RFID3BLKWR 1 21 6899CA5F' command took 1 ms to send, 74 ms to get response, and 84 ms overall
17-03-17 17:29:58.758 -07 000000442 INF: FPGA: Xmit RFID3BLKRD 21\n [PR2RFIDSensor]
17-03-17 17:29:58.818 -07 000000480 INF: FPGA: Recv RFID3BLKRD 0 6899CA5F
17-03-17 17:29:58.818 -07 000000442 INF: FPGA: 'RFID3BLKRD 21' command took 0 ms to send, 59 ms to get response, and 64 ms overall
17-03-17 17:29:58.828 -07 000000442 INF: FPGA: Xmit RFID3BLKWR 1 22 0CD12991\n [PR2RFIDSensor]
17-03-17 17:29:58.908 -07 000000480 INF: FPGA: Recv RFID3BLKWR
17-03-17 17:29:58.908 -07 000000442 INF: FPGA: 'RFID3BLKWR 1 22 0CD12991' command took 1 ms to send, 74 ms to get response, and 84 ms overall
17-03-17 17:29:58.908 -07 000000442 INF: FPGA: Xmit RFID3BLKRD 22\n [PR2RFIDSensor]
17-03-17 17:29:58.968 -07 000000382 INF: FPGA: Recv RFID3BLKRD 0 CD12991
17-03-17 17:29:58.968 -07 000000442 INF: FPGA: 'RFID3BLKRD 22' command took 0 ms to send, 59 ms to get response, and 64 ms overall
17-03-17 17:29:58.968 -07 000000442 INF: FPGA: Xmit RFID3BLKWR 1 23 3833304D\n [PR2RFIDSensor]
17-03-17 17:29:59.058 -07 000000382 INF: FPGA: Recv RFID3BLKWR
17-03-17 17:29:59.058 -07 000000442 INF: FPGA: 'RFID3BLKWR 1 23 3833304D' command took 1 ms to send, 73 ms to get response, and 84 ms overall
17-03-17 17:29:59.058 -07 000000442 INF: FPGA: Xmit RFID3BLKRD 23\n [PR2RFIDSensor]
17-03-17 17:29:59.118 -07 000000429 INF: FPGA: Recv RFID3BLKRD 0 3833304D
17-03-17 17:29:59.118 -07 000000442 INF: FPGA: 'RFID3BLKRD 23' command took 0 ms to send, 58 ms to get response, and 64 ms overall
17-03-17 17:29:59.118 -07 000000442 INF: FPGA: Xmit RFID3BLKWR 1 24 00003431\n [PR2RFIDSensor]
17-03-17 17:29:59.208 -07 000000382 INF: FPGA: Recv RFID3BLKWR
17-03-17 17:29:59.208 -07 000000442 INF: FPGA: 'RFID3BLKWR 1 24 00003431' command took 1 ms to send, 74 ms to get response, and 84 ms overall
17-03-17 17:29:59.208 -07 000000442 INF: FPGA: Xmit RFID3BLKRD 24\n [PR2RFIDSensor]
17-03-17 17:29:59.268 -07 000000480 INF: FPGA: Recv RFID3BLKRD 0 3431
17-03-17 17:29:59.268 -07 000000442 INF: FPGA: 'RFID3BLKRD 24' command took 0 ms to send, 58 ms to get response, and 64 ms overall
17-03-17 17:29:59.268 -07 000000442 INF: FPGA: Xmit RFID3BLKWR 1 25 00000000\n [PR2RFIDSensor]
17-03-17 17:29:59.358 -07 000000429 INF: FPGA: Recv RFID3BLKWR
17-03-17 17:29:59.358 -07 000000442 INF: FPGA: 'RFID3BLKWR 1 25 00000000' command took 1 ms to send, 73 ms to get response, and 84 ms overall
17-03-17 17:29:59.358 -07 000000442 INF: FPGA: Xmit RFID3BLKRD 25\n [PR2RFIDSensor]
17-03-17 17:29:59.418 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:59.418 -07 000000429 INF: FPGA: Recv YRDPOS 154379
17-03-17 17:29:59.418 -07 000000382 INF: FPGA: Recv RFID3BLKRD 0 0
17-03-17 17:29:59.418 -07 000000442 INF: FPGA: 'RFID3BLKRD 25' command took 0 ms to send, 56 ms to get response, and 63 ms overall
17-03-17 17:29:59.428 -07 000000442 INF: FPGA: Xmit RFID3BLKWR 1 26 00000000\n [PR2RFIDSensor]
17-03-17 17:29:59.428 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:59.428 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:59.438 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:29:59.438 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 17:29:59.438 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3139 ms
17-03-17 17:29:59.448 -07 000000610 INF: =================== Cycle #2, Flow Cell Temp 60° ===================
17-03-17 17:29:59.448 -07 000000610 INF: =================== Cycle #2, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 17:29:59.448 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 17:29:59.448 -07 000000382 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:29:59.458 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:29:59.458 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:29:59.458 -07 000000382 INF: FPGA: Recv TEC2EN 
17-03-17 17:29:59.468 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:59.468 -07 000000610 INF: =================== Cycle #2, Flow Cell Temp 60° ===================
17-03-17 17:29:59.468 -07 000000610 INF: =================== Cycle #2 ===================
17-03-17 17:29:59.468 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:29:59.468 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:29:59.498 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 17:29:59.498 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 17:29:59.498 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:29:59.508 -07 000000480 INF: FPGA: Recv RFID3BLKWR
17-03-17 17:29:59.508 -07 000000442 INF: FPGA: 'RFID3BLKWR 1 26 00000000' command took 1 ms to send, 74 ms to get response, and 87 ms overall
17-03-17 17:29:59.508 -07 000000442 INF: FPGA: Xmit RFID3BLKRD 26\n [PR2RFIDSensor]
17-03-17 17:29:59.568 -07 000000632 INF: FPGA: Recv RFID3BLKRD 0 0
17-03-17 17:29:59.568 -07 000000442 INF: FPGA: 'RFID3BLKRD 26' command took 0 ms to send, 58 ms to get response, and 63 ms overall
17-03-17 17:29:59.568 -07 000000442 INF: FPGA: Xmit RFID3BLKWR 1 27 00000000\n [PR2RFIDSensor]
17-03-17 17:29:59.658 -07 000000569 INF: FPGA: Recv RFID3BLKWR
17-03-17 17:29:59.658 -07 000000442 INF: FPGA: 'RFID3BLKWR 1 27 00000000' command took 1 ms to send, 82 ms to get response, and 84 ms overall
17-03-17 17:29:59.658 -07 000000442 INF: FPGA: Xmit RFID3BLKRD 27\n [PR2RFIDSensor]
17-03-17 17:29:59.718 -07 000000480 INF: FPGA: Recv RFID3BLKRD 0 0
17-03-17 17:29:59.718 -07 000000442 INF: FPGA: 'RFID3BLKRD 27' command took 0 ms to send, 56 ms to get response, and 63 ms overall
17-03-17 17:29:59.718 -07 000000442 INF: FPGA: Xmit RFID3BLKWR 1 19 00000002\n [PR2RFIDSensor]
17-03-17 17:29:59.798 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:29:59.808 -07 000000382 INF: FPGA: Recv RFID3BLKWR
17-03-17 17:29:59.808 -07 000000442 INF: FPGA: 'RFID3BLKWR 1 19 00000002' command took 1 ms to send, 84 ms to get response, and 87 ms overall
17-03-17 17:29:59.808 -07 000000442 INF: FPGA: Xmit RFID3BLKRD 19\n [PR2RFIDSensor]
17-03-17 17:29:59.818 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 17:29:59.818 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 17:29:59.868 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:29:59.868 -07 000000569 INF: FPGA: Recv RFID3BLKRD 0 2
17-03-17 17:29:59.868 -07 000000442 INF: FPGA: 'RFID3BLKRD 19' command took 0 ms to send, 58 ms to get response, and 63 ms overall
17-03-17 17:29:59.868 -07 000000442 INF: PR2RFIDSensor: RFID Tag Data:
 Tag ID (UID) = 0xE00780CBA2C2324E
 Layout Version = 0
 Serial Number = MS4712097-00PR2
 Expiration Date = 10/25/2017
 Lot Number = 20112108
 Part Number = 15041807
 Part Number Revision = E
 Number Of Cycles = 626
 Is Paired End = True
 Reagent Cartridge Version = 3
 Number of Tiles = 19
 Number of Runs = 1
 Signature = 48 bytes: 28-4E-E3-5D-20-66-78-58-76-85-89-CF-3B-E9-24-AA-4B-27-40-BB-CC-C9-EF-43-88-5A-E0-6B-BE-D7-A4-43-DB-9F-F2-D8-35-A1-0B-05-08-79-1E-41-C4-97-49-F2
 Signature Verified = True

17-03-17 17:29:59.868 -07 000000442 INF: PR2RFIDSensor: RFID Unsigned Tag Data:
 Layout Version = 2
 Lockout = False
 QcHold = False
 RunID_RunDate = 3/17/2017
 RunID_RunNumber = 172
 RunID_ReagentSerialNumber = MS4875354-600V3
 RunID_InstrumentSerialNumber = M03814

17-03-17 17:29:59.868 -07 000000442 INF: FPGA: Xmit RFID3BLKLK 1 20\n [PR2RFIDSensor]
17-03-17 17:29:59.888 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:29:59.888 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:29:59.958 -07 000000480 INF: FPGA: Recv RFID3BLKLK
17-03-17 17:29:59.958 -07 000000442 INF: FPGA: 'RFID3BLKLK 1 20' command took 1 ms to send, 70 ms to get response, and 82 ms overall
17-03-17 17:29:59.958 -07 000000442 INF: FPGA: Xmit RFID3BLKRD 20\n [PR2RFIDSensor]
17-03-17 17:29:59.988 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3) ===================
17-03-17 17:29:59.988 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 17:29:59.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:30:00.018 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 17:30:00.018 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 17:30:00.018 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:30:00.018 -07 000000569 INF: FPGA: Recv RFID3BLKRD 1 AC19D0
17-03-17 17:30:00.018 -07 000000442 INF: FPGA: 'RFID3BLKRD 20' command took 0 ms to send, 55 ms to get response, and 64 ms overall
17-03-17 17:30:00.018 -07 000000442 INF: FPGA: Xmit RFID3BLKLK 1 21\n [PR2RFIDSensor]
17-03-17 17:30:00.098 -07 000000632 INF: FPGA: Recv RFID3BLKLK
17-03-17 17:30:00.098 -07 000000442 INF: FPGA: 'RFID3BLKLK 1 21' command took 1 ms to send, 77 ms to get response, and 82 ms overall
17-03-17 17:30:00.098 -07 000000442 INF: FPGA: Xmit RFID3BLKRD 21\n [PR2RFIDSensor]
17-03-17 17:30:00.148 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 17:30:00.168 -07 000000632 INF: FPGA: Recv RFID3BLKRD 1 6899CA5F
17-03-17 17:30:00.168 -07 000000442 INF: FPGA: 'RFID3BLKRD 21' command took 0 ms to send, 62 ms to get response, and 64 ms overall
17-03-17 17:30:00.168 -07 000000442 INF: FPGA: Xmit RFID3BLKLK 1 22\n [PR2RFIDSensor]
17-03-17 17:30:00.188 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:30:00.248 -07 000000632 INF: FPGA: Recv RFID3BLKLK
17-03-17 17:30:00.248 -07 000000442 INF: FPGA: 'RFID3BLKLK 1 22' command took 1 ms to send, 74 ms to get response, and 82 ms overall
17-03-17 17:30:00.248 -07 000000442 INF: FPGA: Xmit RFID3BLKRD 22\n [PR2RFIDSensor]
17-03-17 17:30:00.308 -07 000000632 INF: FPGA: Recv RFID3BLKRD 1 CD12991
17-03-17 17:30:00.308 -07 000000442 INF: FPGA: 'RFID3BLKRD 22' command took 0 ms to send, 59 ms to get response, and 64 ms overall
17-03-17 17:30:00.308 -07 000000442 INF: FPGA: Xmit RFID3BLKLK 1 23\n [PR2RFIDSensor]
17-03-17 17:30:00.398 -07 000000480 INF: FPGA: Recv RFID3BLKLK
17-03-17 17:30:00.398 -07 000000442 INF: FPGA: 'RFID3BLKLK 1 23' command took 1 ms to send, 72 ms to get response, and 82 ms overall
17-03-17 17:30:00.398 -07 000000442 INF: FPGA: Xmit RFID3BLKRD 23\n [PR2RFIDSensor]
17-03-17 17:30:00.458 -07 000000429 INF: FPGA: Recv RFID3BLKRD 1 3833304D
17-03-17 17:30:00.458 -07 000000442 INF: FPGA: 'RFID3BLKRD 23' command took 0 ms to send, 56 ms to get response, and 64 ms overall
17-03-17 17:30:00.458 -07 000000442 INF: FPGA: Xmit RFID3BLKLK 1 24\n [PR2RFIDSensor]
17-03-17 17:30:00.538 -07 000000382 INF: FPGA: Recv RFID3BLKLK
17-03-17 17:30:00.538 -07 000000442 INF: FPGA: 'RFID3BLKLK 1 24' command took 1 ms to send, 79 ms to get response, and 82 ms overall
17-03-17 17:30:00.538 -07 000000442 INF: FPGA: Xmit RFID3BLKRD 24\n [PR2RFIDSensor]
17-03-17 17:30:00.608 -07 000000433 INF: FPGA: Recv RFID3BLKRD 1 3431
17-03-17 17:30:00.608 -07 000000442 INF: FPGA: 'RFID3BLKRD 24' command took 0 ms to send, 63 ms to get response, and 64 ms overall
17-03-17 17:30:00.608 -07 000000442 INF: FPGA: Xmit RFID3BLKLK 1 25\n [PR2RFIDSensor]
17-03-17 17:30:00.688 -07 000000632 INF: FPGA: Recv RFID3BLKLK
17-03-17 17:30:00.688 -07 000000442 INF: FPGA: 'RFID3BLKLK 1 25' command took 1 ms to send, 76 ms to get response, and 82 ms overall
17-03-17 17:30:00.688 -07 000000442 INF: FPGA: Xmit RFID3BLKRD 25\n [PR2RFIDSensor]
17-03-17 17:30:00.748 -07 000000433 INF: FPGA: Recv RFID3BLKRD 1 0
17-03-17 17:30:00.748 -07 000000442 INF: FPGA: 'RFID3BLKRD 25' command took 0 ms to send, 59 ms to get response, and 63 ms overall
17-03-17 17:30:00.758 -07 000000442 INF: FPGA: Xmit RFID3BLKLK 1 26\n [PR2RFIDSensor]
17-03-17 17:30:00.838 -07 000000632 INF: FPGA: Recv RFID3BLKLK
17-03-17 17:30:00.838 -07 000000442 INF: FPGA: 'RFID3BLKLK 1 26' command took 1 ms to send, 72 ms to get response, and 82 ms overall
17-03-17 17:30:00.838 -07 000000442 INF: FPGA: Xmit RFID3BLKRD 26\n [PR2RFIDSensor]
17-03-17 17:30:00.898 -07 000000382 INF: FPGA: Recv RFID3BLKRD 1 0
17-03-17 17:30:00.898 -07 000000442 INF: FPGA: 'RFID3BLKRD 26' command took 0 ms to send, 55 ms to get response, and 63 ms overall
17-03-17 17:30:00.898 -07 000000442 INF: FPGA: Xmit RFID3BLKLK 1 27\n [PR2RFIDSensor]
17-03-17 17:30:00.978 -07 000000480 INF: FPGA: Recv RFID3BLKLK
17-03-17 17:30:00.978 -07 000000442 INF: FPGA: 'RFID3BLKLK 1 27' command took 1 ms to send, 78 ms to get response, and 82 ms overall
17-03-17 17:30:00.978 -07 000000442 INF: FPGA: Xmit RFID3BLKRD 27\n [PR2RFIDSensor]
17-03-17 17:30:01.048 -07 000000382 INF: FPGA: Recv RFID3BLKRD 1 0
17-03-17 17:30:01.048 -07 000000442 INF: FPGA: 'RFID3BLKRD 27' command took 0 ms to send, 62 ms to get response, and 63 ms overall
17-03-17 17:30:01.048 -07 000000442 INF: PR2RFIDSensor: Unsigned data uses blocks 19 - 27. The following unsigned blocks are locked:
  Block 20 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 21 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 22 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 23 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 24 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 25 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 26 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 27 (Run ID Date/Instrument/Run#/Reagent SN)

17-03-17 17:30:01.048 -07 000000442 INF: ReagentRFIDSensor: Saving Run ID to RFID tag: InstrumentID 'M03814', Run Number 172, Reagent Serial Number 'MS4875354-600V3'
17-03-17 17:30:01.048 -07 000000442 INF: FPGA: Xmit RFID2BLKWR 1 20 00AC19D0\n [ReagentRFIDSensor]
17-03-17 17:30:01.128 -07 000000433 INF: FPGA: Recv RFID2BLKWR
17-03-17 17:30:01.128 -07 000000442 INF: FPGA: 'RFID2BLKWR 1 20 00AC19D0' command took 1 ms to send, 77 ms to get response, and 84 ms overall
17-03-17 17:30:01.128 -07 000000442 INF: FPGA: Xmit RFID2BLKRD 20\n [ReagentRFIDSensor]
17-03-17 17:30:01.198 -07 000000433 INF: FPGA: Recv RFID2BLKRD 0 AC19D0
17-03-17 17:30:01.198 -07 000000442 INF: FPGA: 'RFID2BLKRD 20' command took 0 ms to send, 62 ms to get response, and 64 ms overall
17-03-17 17:30:01.198 -07 000000442 INF: FPGA: Xmit RFID2BLKWR 1 21 6899CA5F\n [ReagentRFIDSensor]
17-03-17 17:30:01.278 -07 000000569 INF: FPGA: Recv RFID2BLKWR
17-03-17 17:30:01.278 -07 000000442 INF: FPGA: 'RFID2BLKWR 1 21 6899CA5F' command took 1 ms to send, 77 ms to get response, and 84 ms overall
17-03-17 17:30:01.278 -07 000000442 INF: FPGA: Xmit RFID2BLKRD 21\n [ReagentRFIDSensor]
17-03-17 17:30:01.348 -07 000000569 INF: FPGA: Recv RFID2BLKRD 0 6899CA5F
17-03-17 17:30:01.348 -07 000000442 INF: FPGA: 'RFID2BLKRD 21' command took 0 ms to send, 62 ms to get response, and 65 ms overall
17-03-17 17:30:01.348 -07 000000442 INF: FPGA: Xmit RFID2BLKWR 1 22 0CD12991\n [ReagentRFIDSensor]
17-03-17 17:30:01.398 -07 000000632 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.101034,
17-03-17 17:30:01.428 -07 000000632 INF: FPGA: Recv RFID2BLKWR
17-03-17 17:30:01.428 -07 000000442 INF: FPGA: 'RFID2BLKWR 1 22 0CD12991' command took 1 ms to send, 77 ms to get response, and 84 ms overall
17-03-17 17:30:01.438 -07 000000442 INF: FPGA: Xmit RFID2BLKRD 22\n [ReagentRFIDSensor]
17-03-17 17:30:01.498 -07 000000433 INF: FPGA: Recv RFID2BLKRD 0 CD12991
17-03-17 17:30:01.498 -07 000000442 INF: FPGA: 'RFID2BLKRD 22' command took 0 ms to send, 54 ms to get response, and 67 ms overall
17-03-17 17:30:01.498 -07 000000442 INF: FPGA: Xmit RFID2BLKWR 1 23 3833304D\n [ReagentRFIDSensor]
17-03-17 17:30:01.498 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:30:01.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:30:01.588 -07 000000429 INF: FPGA: Recv RFID2BLKWR
17-03-17 17:30:01.588 -07 000000442 INF: FPGA: 'RFID2BLKWR 1 23 3833304D' command took 1 ms to send, 81 ms to get response, and 86 ms overall
17-03-17 17:30:01.588 -07 000000442 INF: FPGA: Xmit RFID2BLKRD 23\n [ReagentRFIDSensor]
17-03-17 17:30:01.648 -07 000000429 INF: FPGA: Recv RFID2BLKRD 0 3833304D
17-03-17 17:30:01.648 -07 000000442 INF: FPGA: 'RFID2BLKRD 23' command took 0 ms to send, 56 ms to get response, and 64 ms overall
17-03-17 17:30:01.648 -07 000000442 INF: FPGA: Xmit RFID2BLKWR 1 24 00003431\n [ReagentRFIDSensor]
17-03-17 17:30:01.738 -07 000000632 INF: FPGA: Recv RFID2BLKWR
17-03-17 17:30:01.738 -07 000000442 INF: FPGA: 'RFID2BLKWR 1 24 00003431' command took 1 ms to send, 81 ms to get response, and 85 ms overall
17-03-17 17:30:01.738 -07 000000442 INF: FPGA: Xmit RFID2BLKRD 24\n [ReagentRFIDSensor]
17-03-17 17:30:01.798 -07 000000632 INF: FPGA: Recv RFID2BLKRD 0 3431
17-03-17 17:30:01.798 -07 000000442 INF: FPGA: 'RFID2BLKRD 24' command took 0 ms to send, 56 ms to get response, and 64 ms overall
17-03-17 17:30:01.798 -07 000000442 INF: FPGA: Xmit RFID2BLKWR 1 25 00000000\n [ReagentRFIDSensor]
17-03-17 17:30:01.888 -07 000000632 INF: FPGA: Recv RFID2BLKWR
17-03-17 17:30:01.888 -07 000000442 INF: FPGA: 'RFID2BLKWR 1 25 00000000' command took 1 ms to send, 81 ms to get response, and 85 ms overall
17-03-17 17:30:01.888 -07 000000442 INF: FPGA: Xmit RFID2BLKRD 25\n [ReagentRFIDSensor]
17-03-17 17:30:01.948 -07 000000382 INF: FPGA: Recv RFID2BLKRD 0 0
17-03-17 17:30:01.948 -07 000000442 INF: FPGA: 'RFID2BLKRD 25' command took 0 ms to send, 55 ms to get response, and 63 ms overall
17-03-17 17:30:01.948 -07 000000442 INF: FPGA: Xmit RFID2BLKWR 1 26 00000000\n [ReagentRFIDSensor]
17-03-17 17:30:02.038 -07 000000382 INF: FPGA: Recv RFID2BLKWR
17-03-17 17:30:02.038 -07 000000442 INF: FPGA: 'RFID2BLKWR 1 26 00000000' command took 1 ms to send, 81 ms to get response, and 86 ms overall
17-03-17 17:30:02.038 -07 000000442 INF: FPGA: Xmit RFID2BLKRD 26\n [ReagentRFIDSensor]
17-03-17 17:30:02.098 -07 000000632 INF: FPGA: Recv RFID2BLKRD 0 0
17-03-17 17:30:02.098 -07 000000442 INF: FPGA: 'RFID2BLKRD 26' command took 0 ms to send, 55 ms to get response, and 63 ms overall
17-03-17 17:30:02.098 -07 000000442 INF: FPGA: Xmit RFID2BLKWR 1 27 00000000\n [ReagentRFIDSensor]
17-03-17 17:30:02.188 -07 000000632 INF: FPGA: Recv RFID2BLKWR
17-03-17 17:30:02.188 -07 000000442 INF: FPGA: 'RFID2BLKWR 1 27 00000000' command took 1 ms to send, 81 ms to get response, and 86 ms overall
17-03-17 17:30:02.188 -07 000000442 INF: FPGA: Xmit RFID2BLKRD 27\n [ReagentRFIDSensor]
17-03-17 17:30:02.248 -07 000000382 INF: FPGA: Recv RFID2BLKRD 0 0
17-03-17 17:30:02.248 -07 000000442 INF: FPGA: 'RFID2BLKRD 27' command took 0 ms to send, 56 ms to get response, and 63 ms overall
17-03-17 17:30:02.248 -07 000000442 INF: FPGA: Xmit RFID2BLKWR 1 19 00000002\n [ReagentRFIDSensor]
17-03-17 17:30:02.338 -07 000000429 INF: FPGA: Recv RFID2BLKWR
17-03-17 17:30:02.338 -07 000000442 INF: FPGA: 'RFID2BLKWR 1 19 00000002' command took 1 ms to send, 81 ms to get response, and 84 ms overall
17-03-17 17:30:02.338 -07 000000442 INF: FPGA: Xmit RFID2BLKRD 19\n [ReagentRFIDSensor]
17-03-17 17:30:02.398 -07 000000382 INF: FPGA: Recv RFID2BLKRD 0 2
17-03-17 17:30:02.398 -07 000000442 INF: FPGA: 'RFID2BLKRD 19' command took 0 ms to send, 55 ms to get response, and 63 ms overall
17-03-17 17:30:02.398 -07 000000442 INF: ReagentRFIDSensor: RFID Tag Data:
 Tag ID (UID) = 0xE00780CBA2CC6718
 Layout Version = 1
 Serial Number = MS4875354-600V3
 Expiration Date = 10/10/2017
 Lot Number = 20127607
 Part Number = 15043962
 Part Number Revision = A
 Number Of Cycles = 626
 Is Paired End = True
 Reagent Cartridge Version = 3
 Number of Tiles = 19
 Number of Runs = 1
 Signature = 48 bytes: B7-52-EE-AA-92-E1-85-09-52-7B-31-5C-3A-11-19-7E-02-F3-D2-CD-88-EC-A7-1B-58-44-86-2D-00-2F-EC-81-60-ED-A8-92-D0-DF-8D-FF-F8-49-A1-8E-67-51-40-23
 Signature Verified = True

17-03-17 17:30:02.398 -07 000000442 INF: ReagentRFIDSensor: RFID Unsigned Tag Data:
 Layout Version = 2
 Lockout = False
 QcHold = False
 RunID_RunDate = 3/17/2017
 RunID_RunNumber = 172
 RunID_ReagentSerialNumber = MS4875354-600V3
 RunID_InstrumentSerialNumber = M03814

17-03-17 17:30:02.398 -07 000000442 INF: FPGA: Xmit RFID2BLKLK 1 20\n [ReagentRFIDSensor]
17-03-17 17:30:02.478 -07 000000429 INF: FPGA: Recv RFID2BLKLK
17-03-17 17:30:02.478 -07 000000442 INF: FPGA: 'RFID2BLKLK 1 20' command took 1 ms to send, 78 ms to get response, and 82 ms overall
17-03-17 17:30:02.478 -07 000000442 INF: FPGA: Xmit RFID2BLKRD 20\n [ReagentRFIDSensor]
17-03-17 17:30:02.548 -07 000000382 INF: FPGA: Recv RFID2BLKRD 1 AC19D0
17-03-17 17:30:02.548 -07 000000442 INF: FPGA: 'RFID2BLKRD 20' command took 0 ms to send, 63 ms to get response, and 64 ms overall
17-03-17 17:30:02.548 -07 000000442 INF: FPGA: Xmit RFID2BLKLK 1 21\n [ReagentRFIDSensor]
17-03-17 17:30:02.628 -07 000000429 INF: FPGA: Recv RFID2BLKLK
17-03-17 17:30:02.628 -07 000000442 INF: FPGA: 'RFID2BLKLK 1 21' command took 1 ms to send, 75 ms to get response, and 82 ms overall
17-03-17 17:30:02.628 -07 000000442 INF: FPGA: Xmit RFID2BLKRD 21\n [ReagentRFIDSensor]
17-03-17 17:30:02.698 -07 000000382 INF: FPGA: Recv RFID2BLKRD 1 6899CA5F
17-03-17 17:30:02.698 -07 000000442 INF: FPGA: 'RFID2BLKRD 21' command took 0 ms to send, 60 ms to get response, and 64 ms overall
17-03-17 17:30:02.698 -07 000000442 INF: FPGA: Xmit RFID2BLKLK 1 22\n [ReagentRFIDSensor]
17-03-17 17:30:02.778 -07 000000429 INF: FPGA: Recv RFID2BLKLK
17-03-17 17:30:02.778 -07 000000442 INF: FPGA: 'RFID2BLKLK 1 22' command took 1 ms to send, 72 ms to get response, and 82 ms overall
17-03-17 17:30:02.778 -07 000000442 INF: FPGA: Xmit RFID2BLKRD 22\n [ReagentRFIDSensor]
17-03-17 17:30:02.838 -07 000000429 INF: FPGA: Recv RFID2BLKRD 1 CD12991
17-03-17 17:30:02.838 -07 000000442 INF: FPGA: 'RFID2BLKRD 22' command took 0 ms to send, 57 ms to get response, and 64 ms overall
17-03-17 17:30:02.838 -07 000000442 INF: FPGA: Xmit RFID2BLKLK 1 23\n [ReagentRFIDSensor]
17-03-17 17:30:02.918 -07 000000382 INF: FPGA: Recv RFID2BLKLK
17-03-17 17:30:02.918 -07 000000442 INF: FPGA: 'RFID2BLKLK 1 23' command took 1 ms to send, 79 ms to get response, and 82 ms overall
17-03-17 17:30:02.928 -07 000000442 INF: FPGA: Xmit RFID2BLKRD 23\n [ReagentRFIDSensor]
17-03-17 17:30:02.988 -07 000000429 INF: FPGA: Recv RFID2BLKRD 1 3833304D
17-03-17 17:30:02.988 -07 000000442 INF: FPGA: 'RFID2BLKRD 23' command took 0 ms to send, 56 ms to get response, and 66 ms overall
17-03-17 17:30:02.988 -07 000000442 INF: FPGA: Xmit RFID2BLKLK 1 24\n [ReagentRFIDSensor]
17-03-17 17:30:03.068 -07 000000429 INF: FPGA: Recv RFID2BLKLK
17-03-17 17:30:03.068 -07 000000442 INF: FPGA: 'RFID2BLKLK 1 24' command took 1 ms to send, 79 ms to get response, and 82 ms overall
17-03-17 17:30:03.068 -07 000000442 INF: FPGA: Xmit RFID2BLKRD 24\n [ReagentRFIDSensor]
17-03-17 17:30:03.138 -07 000000429 INF: FPGA: Recv RFID2BLKRD 1 3431
17-03-17 17:30:03.138 -07 000000442 INF: FPGA: 'RFID2BLKRD 24' command took 0 ms to send, 63 ms to get response, and 64 ms overall
17-03-17 17:30:03.138 -07 000000442 INF: FPGA: Xmit RFID2BLKLK 1 25\n [ReagentRFIDSensor]
17-03-17 17:30:03.218 -07 000000429 INF: FPGA: Recv RFID2BLKLK
17-03-17 17:30:03.218 -07 000000442 INF: FPGA: 'RFID2BLKLK 1 25' command took 1 ms to send, 75 ms to get response, and 82 ms overall
17-03-17 17:30:03.218 -07 000000442 INF: FPGA: Xmit RFID2BLKRD 25\n [ReagentRFIDSensor]
17-03-17 17:30:03.278 -07 000000626 INF: FPGA: Recv RFID2BLKRD 1 0
17-03-17 17:30:03.278 -07 000000442 INF: FPGA: 'RFID2BLKRD 25' command took 0 ms to send, 59 ms to get response, and 63 ms overall
17-03-17 17:30:03.278 -07 000000442 INF: FPGA: Xmit RFID2BLKLK 1 26\n [ReagentRFIDSensor]
17-03-17 17:30:03.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:03.348 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:30:03.368 -07 000000458 INF: FPGA: Recv RFID2BLKLK
17-03-17 17:30:03.368 -07 000000442 INF: FPGA: 'RFID2BLKLK 1 26' command took 1 ms to send, 71 ms to get response, and 82 ms overall
17-03-17 17:30:03.368 -07 000000442 INF: FPGA: Xmit RFID2BLKRD 26\n [ReagentRFIDSensor]
17-03-17 17:30:03.428 -07 000000626 INF: FPGA: Recv RFID2BLKRD 1 0
17-03-17 17:30:03.428 -07 000000442 INF: FPGA: 'RFID2BLKRD 26' command took 0 ms to send, 55 ms to get response, and 63 ms overall
17-03-17 17:30:03.428 -07 000000442 INF: FPGA: Xmit RFID2BLKLK 1 27\n [ReagentRFIDSensor]
17-03-17 17:30:03.508 -07 000000429 INF: FPGA: Recv RFID2BLKLK
17-03-17 17:30:03.508 -07 000000442 INF: FPGA: 'RFID2BLKLK 1 27' command took 1 ms to send, 78 ms to get response, and 82 ms overall
17-03-17 17:30:03.508 -07 000000442 INF: FPGA: Xmit RFID2BLKRD 27\n [ReagentRFIDSensor]
17-03-17 17:30:03.578 -07 000000382 INF: FPGA: Recv RFID2BLKRD 1 0
17-03-17 17:30:03.578 -07 000000442 INF: FPGA: 'RFID2BLKRD 27' command took 0 ms to send, 61 ms to get response, and 63 ms overall
17-03-17 17:30:03.578 -07 000000442 INF: ReagentRFIDSensor: Unsigned data uses blocks 19 - 27. The following unsigned blocks are locked:
  Block 20 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 21 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 22 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 23 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 24 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 25 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 26 (Run ID Date/Instrument/Run#/Reagent SN)
  Block 27 (Run ID Date/Instrument/Run#/Reagent SN)

17-03-17 17:30:03.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:03.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:30:04.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:04.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:04.248 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 17:30:04.248 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3) ===================
17-03-17 17:30:04.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:30:04.408 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:30:04.408 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:30:04.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:30:04.568 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:30:04.568 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:30:04.568 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:30:04.698 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:30:04.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:05.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:05.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:05.188 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:30:05.188 -07 000000610 INF: =================== Cycle #2 ===================
17-03-17 17:30:06.408 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 17:30:06.408 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 17:30:06.408 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:30:06.428 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:30:06.428 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 17:30:06.428 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 17:30:06.498 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:30:06.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:30:06.558 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:30:06.578 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 17:30:06.578 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 17:30:06.628 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:30:06.648 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 17:30:06.648 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:30:06.748 -07 000000610 INF: =================== Cycle #2, Pumping Reagent CMS (4) ===================
17-03-17 17:30:06.748 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:30:06.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:30:06.768 -07 000000442 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.105114,
17-03-17 17:30:06.778 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:30:06.778 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:30:06.778 -07 000000610 INF: =================== Cycle #2, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 17:30:06.908 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:30:06.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:30:08.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:08.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:30:08.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:08.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:08.868 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 17:30:08.868 -07 000000610 INF: =================== Cycle #2, Pumping Reagent CMS (4) ===================
17-03-17 17:30:08.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:30:09.028 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:30:09.028 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:30:09.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:30:09.188 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:30:09.188 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:30:09.188 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:30:09.318 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:30:09.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:09.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:09.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:09.808 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:30:09.808 -07 000000610 INF: =================== Cycle #2 ===================
17-03-17 17:30:11.028 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 17:30:11.028 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:30:11.028 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:30:11.048 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 17:30:11.048 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 17:30:11.048 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 17:30:11.198 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:30:11.218 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 17:30:11.218 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 17:30:11.268 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:30:11.288 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:30:11.288 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:30:11.388 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3) ===================
17-03-17 17:30:11.388 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:30:11.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:30:11.418 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:30:11.418 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:30:11.418 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:30:11.508 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:30:11.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:30:11.548 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:30:11.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:30:12.148 -07 000000442 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.121402,
17-03-17 17:30:12.458 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:12.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:12.488 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 17:30:12.488 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3) ===================
17-03-17 17:30:12.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:30:12.648 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:30:12.648 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:30:12.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:30:12.808 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:30:12.808 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:30:12.808 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:30:12.938 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:30:12.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:13.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:13.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:13.428 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:30:13.428 -07 000000610 INF: =================== Cycle #2 ===================
17-03-17 17:30:13.428 -07 000000442 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:30:13.428 -07 000000442 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 17:30:14.258 -07 000000475 INF: WaitCommand(10000) start
17-03-17 17:30:14.648 -07 000000442 INF: AsyncDelayTimer waited 1216ms
17-03-17 17:30:14.648 -07 000000442 INF: LanePump: Xmit /1?\r
17-03-17 17:30:15.268 -07 000000442 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:30:15.268 -07 000000442 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:30:15.398 -07 000000442 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 17:30:15.438 -07 000000442 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:30:16.498 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:30:16.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:30:16.968 -07 000000442 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:16.998 -07 000000442 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:30:17.418 -07 000000442 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:17.448 -07 000000442 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:17.448 -07 000000442 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 17:30:17.448 -07 000000442 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:30:17.448 -07 000000442 INF: ===================  ===================
17-03-17 17:30:17.508 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.111916,
17-03-17 17:30:21.498 -07 000000442 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:30:21.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:30:22.878 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.124123,
17-03-17 17:30:24.268 -07 000000475 INF: WaitCommand(10000) end
17-03-17 17:30:24.268 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3) ===================
17-03-17 17:30:24.268 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 17:30:24.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:30:24.298 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 17:30:24.298 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 17:30:24.298 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:30:24.428 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 17:30:24.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:30:26.508 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:30:26.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:30:28.518 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.125484,
17-03-17 17:30:30.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:30.628 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:30:31.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:31.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:30:31.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:31.508 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:30:31.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:30:31.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:30:31.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:31.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:30:32.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:32.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:32.428 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 17:30:32.428 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3) ===================
17-03-17 17:30:32.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:30:32.588 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:30:32.588 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:30:32.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:30:32.748 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:30:32.748 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:30:32.748 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:30:32.878 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:30:32.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:33.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:33.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:33.368 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:30:33.368 -07 000000610 INF: =================== Cycle #2 ===================
17-03-17 17:30:34.198 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.106475,
17-03-17 17:30:34.588 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:30:34.588 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 17:30:34.588 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:30:34.608 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:30:34.608 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 17:30:34.608 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 17:30:34.818 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:30:34.838 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 17:30:34.838 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 17:30:34.888 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:30:34.908 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 17:30:34.908 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:30:35.008 -07 000000610 INF: =================== Cycle #2, Pumping Reagent IMT (1) ===================
17-03-17 17:30:35.008 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:30:35.008 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:30:35.038 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:30:35.038 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:30:35.038 -07 000000610 INF: =================== Cycle #2, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 17:30:35.168 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:30:35.208 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:30:36.508 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:30:36.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:30:36.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:36.678 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:30:37.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:37.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:37.128 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 17:30:37.128 -07 000000610 INF: =================== Cycle #2, Pumping Reagent IMT (1) ===================
17-03-17 17:30:37.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:30:37.288 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 17:30:37.288 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 17:30:37.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:30:37.448 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 17:30:37.448 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 17:30:37.448 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:30:37.578 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:30:37.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:38.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:38.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:38.068 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:30:38.068 -07 000000610 INF: =================== Cycle #2 ===================
17-03-17 17:30:39.288 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 17:30:39.288 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:30:39.288 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:30:39.308 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 17:30:39.308 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 17:30:39.308 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:30:39.538 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:30:39.558 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 17:30:39.558 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 17:30:39.568 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.094233,
17-03-17 17:30:39.608 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:30:39.628 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:30:39.628 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:30:39.728 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3) ===================
17-03-17 17:30:39.728 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:30:39.728 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:30:39.758 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 17:30:39.758 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 17:30:39.758 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:30:39.888 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:30:39.928 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:30:40.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:40.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:40.828 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 17:30:40.828 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3) ===================
17-03-17 17:30:40.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:30:40.988 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 17:30:40.988 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 17:30:41.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:30:41.148 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 17:30:41.148 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 17:30:41.148 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:30:41.278 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:30:41.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:41.508 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 17:30:41.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=34, Total=63. Warn if over 250 bubbles per interval.
17-03-17 17:30:41.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:30:41.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:30:41.768 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:30:41.768 -07 000000610 INF: =================== Cycle #2 ===================
17-03-17 17:30:41.768 -07 000000610 INF: =================== Cycle #2, Flow Cell Temp 65° ===================
17-03-17 17:30:41.768 -07 000000610 INF: =================== Cycle #2, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 17:30:41.768 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 17:30:41.768 -07 000000475 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:30:41.778 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:30:41.778 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:30:41.778 -07 000000475 INF: FPGA: Recv TEC2EN 
17-03-17 17:30:41.788 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:30:41.788 -07 000000610 INF: =================== Cycle #2, Flow Cell Temp 65° ===================
17-03-17 17:30:41.788 -07 000000610 INF: =================== Cycle #2 ===================
17-03-17 17:30:41.788 -07 000000610 INF: WaitCommand(30000) start
17-03-17 17:30:44.948 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.095593,
17-03-17 17:30:46.508 -07 000000442 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:30:46.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=34, Total=63. Warn if over 250 bubbles per interval.
17-03-17 17:30:50.308 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.098313,
17-03-17 17:30:51.508 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 17:30:51.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:30:55.678 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.091548,
17-03-17 17:30:56.508 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:30:56.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:31:01.048 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.091548,
17-03-17 17:31:01.508 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:31:01.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:31:06.418 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.094233,
17-03-17 17:31:06.508 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:31:06.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:31:11.508 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:31:11.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:31:11.798 -07 000000610 INF: WaitCommand(30000) end
17-03-17 17:31:11.798 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.088793,
17-03-17 17:31:11.798 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3) ===================
17-03-17 17:31:11.798 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 17:31:11.898 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:31:11.928 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 17:31:11.928 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 17:31:11.928 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:31:12.058 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 17:31:12.098 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:31:12.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:31:12.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:31:12.668 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 17:31:12.668 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3) ===================
17-03-17 17:31:12.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:31:12.828 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 17:31:12.828 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 17:31:12.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:31:12.988 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 17:31:12.988 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 17:31:12.988 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:31:13.118 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:31:13.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:31:13.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:31:13.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:31:13.608 -07 000000610 INF: LanePump: Waited 458 ms for pump motion to complete
17-03-17 17:31:13.608 -07 000000610 INF: =================== Cycle #2 ===================
17-03-17 17:31:13.608 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:31:13.608 -07 000000618 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 17:31:13.608 -07 000000551 INF: WaitCommand(30000) start
17-03-17 17:31:14.828 -07 000000618 INF: AsyncDelayTimer waited 1216ms
17-03-17 17:31:14.828 -07 000000618 INF: LanePump: Xmit /1?\r
17-03-17 17:31:14.858 -07 000000618 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 17:31:14.858 -07 000000618 INF: LanePump: Current Position of Pump is: 1920
17-03-17 17:31:14.988 -07 000000618 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 17:31:15.028 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:31:16.508 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:31:16.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:31:17.158 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.095593,
17-03-17 17:31:17.368 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-17 17:31:17.398 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:31:17.818 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-17 17:31:17.848 -07 000000618 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:31:17.848 -07 000000618 INF: LanePump: Waited 2820 ms for pump motion to complete
17-03-17 17:31:17.848 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:31:17.848 -07 000000618 INF: ===================  ===================
17-03-17 17:31:21.508 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:31:21.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:31:22.528 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.101034,
17-03-17 17:31:26.508 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:31:26.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:31:27.898 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.088793,
17-03-17 17:31:31.508 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:31:31.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:31:33.268 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.06027,
17-03-17 17:31:36.508 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:31:36.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:31:38.638 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.083353,
17-03-17 17:31:41.508 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:31:41.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:31:43.618 -07 000000551 INF: WaitCommand(30000) end
17-03-17 17:31:43.618 -07 000000610 INF: =================== Cycle #2, Flow Cell Temp 22° ===================
17-03-17 17:31:43.618 -07 000000610 INF: =================== Cycle #2, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 17:31:43.738 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:31:43.738 -07 000000459 INF: FPGA: Recv TEC2EN 
17-03-17 17:31:43.748 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:31:43.748 -07 000000610 INF: =================== Cycle #2, Flow Cell Temp 22° ===================
17-03-17 17:31:43.748 -07 000000610 INF: =================== Cycle #2 ===================
17-03-17 17:31:43.748 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3) ===================
17-03-17 17:31:43.748 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 17:31:43.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:31:43.788 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 17:31:43.788 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 17:31:43.788 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:31:43.918 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 17:31:43.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:31:44.008 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.088793,
17-03-17 17:31:46.508 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:31:46.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:31:47.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:31:47.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:31:47.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:31:47.568 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:31:47.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:31:48.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:31:48.018 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 17:31:48.018 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3) ===================
17-03-17 17:31:48.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:31:48.178 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:31:48.178 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:31:48.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:31:48.338 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:31:48.338 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:31:48.338 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:31:48.468 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:31:48.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:31:48.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:31:48.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:31:48.958 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:31:48.958 -07 000000610 INF: =================== Cycle #2 ===================
17-03-17 17:31:49.388 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.117321,
17-03-17 17:31:50.178 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:31:50.178 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 17:31:50.178 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:31:50.198 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:31:50.198 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 17:31:50.198 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 17:31:50.348 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:31:50.368 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 17:31:50.368 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 17:31:50.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:31:50.438 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 17:31:50.438 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:31:50.538 -07 000000610 INF: =================== Cycle #2, Pumping Reagent USM (2) ===================
17-03-17 17:31:50.538 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:31:50.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:31:50.568 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:31:50.568 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:31:50.568 -07 000000610 INF: =================== Cycle #2, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 17:31:50.698 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:31:50.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:31:51.508 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:31:51.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:31:52.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:31:52.208 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:31:52.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:31:52.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:31:52.658 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 17:31:52.658 -07 000000610 INF: =================== Cycle #2, Pumping Reagent USM (2) ===================
17-03-17 17:31:52.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:31:52.818 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:31:52.818 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:31:52.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:31:52.978 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:31:52.978 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:31:52.978 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:31:53.108 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:31:53.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:31:53.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:31:53.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:31:53.598 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:31:53.598 -07 000000610 INF: =================== Cycle #2 ===================
17-03-17 17:31:54.748 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.092873,
17-03-17 17:31:54.818 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:31:54.818 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:31:54.818 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:31:54.838 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 17:31:54.838 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 17:31:54.838 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:31:54.988 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:31:55.008 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 17:31:55.008 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 17:31:55.058 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:31:55.078 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:31:55.078 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:31:55.178 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3) ===================
17-03-17 17:31:55.178 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:31:55.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:31:55.208 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:31:55.208 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:31:55.208 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:31:55.338 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:31:55.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:31:56.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:31:56.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:31:56.278 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 17:31:56.278 -07 000000610 INF: =================== Cycle #2, Pumping Reagent PR2 (3) ===================
17-03-17 17:31:56.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:31:56.438 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:31:56.438 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:31:56.508 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:31:56.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:31:56.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:31:56.598 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:31:56.598 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:31:56.598 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:31:56.728 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:31:56.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:31:57.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:31:57.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:31:57.218 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:31:57.218 -07 000000610 INF: =================== Cycle #2 ===================
17-03-17 17:31:57.218 -07 000000382 INF: WaitCommand(10000) start
17-03-17 17:31:57.218 -07 000000551 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:31:57.218 -07 000000551 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 17:31:58.438 -07 000000551 INF: AsyncDelayTimer waited 1216ms
17-03-17 17:31:58.438 -07 000000551 INF: LanePump: Xmit /1?\r
17-03-17 17:31:58.468 -07 000000551 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:31:58.468 -07 000000551 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:31:58.598 -07 000000551 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 17:31:58.638 -07 000000551 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:32:00.118 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.075228,
17-03-17 17:32:00.168 -07 000000551 INF: LanePump: Xmit /1Q\r
17-03-17 17:32:00.198 -07 000000551 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:32:00.618 -07 000000551 INF: LanePump: Xmit /1Q\r
17-03-17 17:32:00.648 -07 000000551 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:32:00.648 -07 000000551 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 17:32:00.648 -07 000000551 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:32:00.648 -07 000000551 INF: ===================  ===================
17-03-17 17:32:01.508 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:32:01.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:32:05.488 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.084713,
17-03-17 17:32:06.508 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:32:06.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:32:07.228 -07 000000382 INF: WaitCommand(10000) end
17-03-17 17:32:07.228 -07 000000610 INF: =================== Cycle #2, Imaging ===================
17-03-17 17:32:07.228 -07 000000610 INF: Imaging Cycle 2: ScanTilesCommand Cycle 2 time start.
17-03-17 17:32:07.238 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 17:32:07.238 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:32:07.258 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:32:07.258 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 17:32:07.258 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 17:32:07.558 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:32:07.578 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 17:32:07.578 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 17:32:07.628 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:32:07.648 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 17:32:07.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:07.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:07.648 -07 000000618 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 17:32:07.648 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:07.648 -07 000000618 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 17:32:07.648 -07 000000459 INF: FPGA: Recv EXLED1ON 
17-03-17 17:32:07.658 -07 000000618 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:32:07.658 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 17:32:07.658 -07 000000462 INF: FPGA: Recv EXLED1ADCR 23228
17-03-17 17:32:07.668 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:07.668 -07 000000618 INF: RedLED: Using Red data: Photodiode ADC 23228 --> 7.5 mW (old method), or 205.8 mW (new method). Difference = 198.4 mW
17-03-17 17:32:07.668 -07 000000618 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 17:32:07.668 -07 000000459 INF: FPGA: Recv EXLED1OFF 
17-03-17 17:32:07.678 -07 000000618 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:07.678 -07 000000618 INF: RedLED: LED was on for 20 ms
17-03-17 17:32:07.678 -07 000000618 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 17:32:07.678 -07 000000618 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 17:32:07.678 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:07.678 -07 000000618 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 17:32:07.678 -07 000000462 INF: FPGA: Recv EXLED2ON 
17-03-17 17:32:07.688 -07 000000618 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:32:07.688 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 17:32:07.688 -07 000000561 INF: FPGA: Recv EXLED1ADCR 2098
17-03-17 17:32:07.698 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:07.698 -07 000000618 INF: GreenLED: Using Green data: Photodiode ADC 2098 --> 0.9 mW (old method), or 182.3 mW (new method). Difference = 181.4 mW
17-03-17 17:32:07.698 -07 000000618 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 17:32:07.698 -07 000000382 INF: FPGA: Recv EXLED2OFF 
17-03-17 17:32:07.708 -07 000000618 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:07.708 -07 000000618 INF: GreenLED: LED was on for 19 ms
17-03-17 17:32:07.708 -07 000000618 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 17:32:07.708 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 17:32:07.708 -07 000000459 INF: FPGA: Recv EMCUR 
17-03-17 17:32:07.718 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:32:07.718 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 17:32:08.218 -07 000000459 INF: FPGA: Recv EMOUT
17-03-17 17:32:08.218 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 17:32:08.218 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 17:32:08.218 -07 000000459 INF: FPGA: Recv EMCUR 
17-03-17 17:32:08.228 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:32:08.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:32:08.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.125732538634498. ------
17-03-17 17:32:08.228 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:08.228 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17712 mm
17-03-17 17:32:08.228 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:32:08.228 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 17:32:08.228 -07 000000462 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-17 17:32:08.238 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:08.238 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:08.238 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:32:08.238 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38691, sync = True, waitForSettling = False)
17-03-17 17:32:08.238 -07 000000618 INF: Z Motor: Moving to -0.177116 mm, started at -0.125733 mm, distance = -51.38 um
17-03-17 17:32:08.238 -07 000000478 INF: FPGA: Recv YRDPOS 154379
17-03-17 17:32:08.248 -07 000000618 INF: FPGA: Xmit ZDACW 38691\n [Z Motor]
17-03-17 17:32:08.248 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:08.248 -07 000000462 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:08.248 -07 000000462 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 17:32:08.248 -07 000000462 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 17:32:08.248 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:32:08.258 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:32:08.258 -07 000000618 INF: FPGA: 'ZDACW 38691' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 17:32:08.268 -07 000000462 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 17:32:08.278 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:08.278 -07 000000459 INF: FPGA: Recv ZDACR 38691
17-03-17 17:32:08.288 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 17:32:08.288 -07 000000618 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 17:32:08.458 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:32:08.458 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:32:09.948 -07 000000459 INF: FPGA: Recv YMVTO 122702 24774
17-03-17 17:32:09.948 -07 000000462 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1678 ms to get response, and 1708 ms overall
17-03-17 17:32:09.948 -07 000000462 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 17:32:09.948 -07 000000462 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24774 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 17:32:09.948 -07 000000462 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1708 ms, distance = 15.468 mm, average velocity = 9.056 mm/sec
17-03-17 17:32:11.508 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:32:11.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:32:11.798 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.068429,
17-03-17 17:32:12.798 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:12.798 -07 000000478 INF: FPGA: Recv YRDPOS 122698
17-03-17 17:32:12.808 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:12.808 -07 000000462 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:12.818 -07 000000462 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:32:12.818 -07 000000462 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 17:32:12.818 -07 000000462 INF: Y Motor: Moved to 59.9111 after 4591 ms
17-03-17 17:32:12.828 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177116 mm (DAC = 38691)
17-03-17 17:32:12.828 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:12.828 -07 000000478 INF: FPGA: Recv ZSGSRD 36857
17-03-17 17:32:12.838 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:32:12.838 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:12.838 -07 000000438 INF: FPGA: Recv ZSGSRD 36855
17-03-17 17:32:12.848 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:12.848 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:12.848 -07 000000478 INF: FPGA: Recv ZSGSRD 36861
17-03-17 17:32:12.858 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:12.858 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:12.858 -07 000000459 INF: FPGA: Recv ZSGSRD 36863
17-03-17 17:32:12.868 -07 000000382 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:12.868 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:12.868 -07 000000438 INF: FPGA: Recv ZSGSRD 36858
17-03-17 17:32:12.878 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:12.878 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:12.878 -07 000000459 INF: FPGA: Recv ZSGSRD 36862
17-03-17 17:32:12.888 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:12.888 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:12.888 -07 000000462 INF: FPGA: Recv ZSGSRD 36858
17-03-17 17:32:12.898 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:12.898 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:12.898 -07 000000478 INF: FPGA: Recv ZSGSRD 36860
17-03-17 17:32:12.908 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:12.908 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:12.908 -07 000000459 INF: FPGA: Recv ZSGSRD 36864
17-03-17 17:32:12.918 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:12.918 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:12.918 -07 000000438 INF: FPGA: Recv ZSGSRD 36860
17-03-17 17:32:12.928 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:12.928 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:12.928 -07 000000438 INF: FPGA: Recv ZPIEZORD 33107
17-03-17 17:32:12.938 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:12.938 -07 000000382 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.904 V. Piezo Error = -8.3 V.
17-03-17 17:32:12.938 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36860 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36860 (-176.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36855 (-176.2 uncal um), Max = 36864 (-176.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:32:12.938 -07 000000382 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36860, posNoise = 4, negNoise = 5
17-03-17 17:32:12.938 -07 000000382 INF: Z Motor: After move to -0.177116, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:12.938 -07 000000382 INF: Z Motor: Settle wait time = 4591 ms, measure time = 108 ms (allowed 150 ms), total time = 4699 ms
17-03-17 17:32:12.938 -07 000000382 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:32:12.988 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4754 ms
17-03-17 17:32:12.988 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:32:12.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:12.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:12.988 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:12.988 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:12.988 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:32:12.988 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:12.988 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:32:12.988 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 17:32:13.018 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 17:32:13.018 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:32:13.018 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 17:32:13.018 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:32:13.038 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:32:13.038 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-17 17:32:13.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:32:13.078 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:32:13.278 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:32:13.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:32:13.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:32:13.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:32:13.318 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:32:13.318 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 17:32:13.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 17:32:13.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:32:13.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:13.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:32:13.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:32:13.518 -07 000000478 INF: Image SNR check: start
17-03-17 17:32:13.518 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:13.518 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:13.528 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:32:13.528 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:32:13.528 -07 000000478 INF: Image SNR check: pass  [peak (Max-Min)=93.86]
17-03-17 17:32:13.528 -07 000000478 INF: Autofocus start
17-03-17 17:32:13.528 -07 000000478 INF: MeasureProfile start
17-03-17 17:32:13.538 -07 000000478 INF: MeasureProfile done
17-03-17 17:32:13.538 -07 000000478 INF: X=320  Z correction [um]=1.545875
17-03-17 17:32:13.538 -07 000000478 INF: Autofocus finished
17-03-17 17:32:13.728 -07 000000631 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:32:13.728 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:32:13.728 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.177119811556444. ----------
17-03-17 17:32:13.728 -07 000000610 INF: Cycle	2	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:32:13.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37541, sync = True, waitForSettling = True)
17-03-17 17:32:13.738 -07 000000610 INF: Z Motor: Moving to -0.171852 mm, started at -0.177120 mm, distance = 5.27 um
17-03-17 17:32:13.738 -07 000000610 INF: FPGA: Xmit ZDACW 37541\n [Z Motor]
17-03-17 17:32:13.738 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 17:32:13.748 -07 000000610 INF: FPGA: 'ZDACW 37541' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:32:13.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:13.748 -07 000000551 INF: FPGA: Recv ZDACR 37541
17-03-17 17:32:13.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:13.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:32:13.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:13.908 -07 000000459 INF: FPGA: Recv ZSGSRD 36040
17-03-17 17:32:13.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:13.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:13.918 -07 000000478 INF: FPGA: Recv ZSGSRD 36045
17-03-17 17:32:13.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:13.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:13.928 -07 000000382 INF: FPGA: Recv ZSGSRD 36036
17-03-17 17:32:13.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:13.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:13.938 -07 000000551 INF: FPGA: Recv ZSGSRD 36044
17-03-17 17:32:13.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:13.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:13.948 -07 000000382 INF: FPGA: Recv ZSGSRD 36043
17-03-17 17:32:13.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:13.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:13.958 -07 000000459 INF: FPGA: Recv ZSGSRD 36038
17-03-17 17:32:13.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:13.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:13.968 -07 000000382 INF: FPGA: Recv ZSGSRD 36039
17-03-17 17:32:13.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:13.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:13.978 -07 000000459 INF: FPGA: Recv ZSGSRD 36038
17-03-17 17:32:13.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:13.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:13.988 -07 000000551 INF: FPGA: Recv ZSGSRD 36047
17-03-17 17:32:13.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:13.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:13.998 -07 000000459 INF: FPGA: Recv ZSGSRD 36042
17-03-17 17:32:14.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:14.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:14.008 -07 000000382 INF: FPGA: Recv ZPIEZORD 32034
17-03-17 17:32:14.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:14.018 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.728 V. Piezo Error = -8.9 V.
17-03-17 17:32:14.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36041 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36041 (-171.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36036 (-170.9 uncal um), Max = 36047 (-171.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:32:14.018 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36041, posNoise = 6, negNoise = 5
17-03-17 17:32:14.018 -07 000000610 INF: Z Motor: After move to -0.171852, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:14.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:32:14.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:14.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:14.018 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:14.018 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:14.018 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:32:14.018 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:14.018 -07 000000631 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:32:14.018 -07 000000631 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:32:14.018 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:32:14.018 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:32:14.018 -07 000000631 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:32:14.018 -07 000000631 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 17:32:14.028 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:32:14.028 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:32:14.038 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 17:32:14.038 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 17:32:14.048 -07 000000631 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 17:32:14.048 -07 000000631 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:32:14.048 -07 000000631 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:32:14.048 -07 000000631 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:32:14.058 -07 000000631 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 17:32:14.058 -07 000000631 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-17 17:32:14.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37718 150\n [Camera]
17-03-17 17:32:14.258 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:32:14.648 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:32:14.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:32:14.648 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:14.658 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:32:14.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:32:14.658 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:14.658 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:14.658 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:32:14.658 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:14.658 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:32:14.848 -07 000000631 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37718 775
17-03-17 17:32:14.998 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:32:15.048 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 17:32:15.048 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:32:15.048 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:15.058 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 17:32:15.058 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:32:15.058 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:15.058 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:32:15.058 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 17:32:15.068 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:32:15.068 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 17:32:15.178 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:32:15.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:32:15.188 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:15.288 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:32:15.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:32:15.288 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:15.298 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:15.298 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) start.
17-03-17 17:32:15.298 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:15.298 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:32:15.378 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:32:15.378 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:32:15.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37718 150' command took 2 ms to send, 1301 ms to get response, and 1312 ms overall
17-03-17 17:32:15.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:32:15.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.171858381812342. ------
17-03-17 17:32:15.378 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:15.378 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17826 mm
17-03-17 17:32:15.378 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:32:15.378 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 17:32:15.378 -07 000000623 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 17:32:15.378 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38940, sync = True, waitForSettling = False)
17-03-17 17:32:15.378 -07 000000618 INF: Z Motor: Moving to -0.178256 mm, started at -0.171858 mm, distance = -6.40 um
17-03-17 17:32:15.378 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:15.388 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:32:15.388 -07 000000618 INF: FPGA: Xmit ZDACW 38940\n [Z Motor]
17-03-17 17:32:15.388 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 17:32:15.398 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:15.398 -07 000000618 INF: FPGA: 'ZDACW 38940' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:15.398 -07 000000551 INF: FPGA: Recv YRDPOS 122698
17-03-17 17:32:15.408 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:32:15.408 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 17:32:15.408 -07 000000623 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:15.408 -07 000000623 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:32:15.408 -07 000000623 INF: Y Motor: Moving 1330 steps1
17-03-17 17:32:15.418 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:15.418 -07 000000561 INF: FPGA: Recv ZDACR 38940
17-03-17 17:32:15.428 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:32:15.428 -07 000000618 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 17:32:15.428 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:32:15.608 -07 000000631 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:32:15.608 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:32:15.688 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 17:32:15.688 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 17:32:15.688 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:15.688 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 17:32:15.688 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:32:15.688 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:15.698 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:32:15.698 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 17:32:15.698 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:32:15.708 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 17:32:15.798 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 17:32:15.798 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 17:32:15.828 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:15.828 -07 000000486 INF: FPGA: Recv YRDPOS 124382
17-03-17 17:32:15.838 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:32:15.838 -07 000000623 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:15.838 -07 000000623 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 17:32:15.838 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 17:32:16.508 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:32:16.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:32:16.788 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:16.788 -07 000000627 INF: FPGA: Recv YRDPOS 124382
17-03-17 17:32:16.798 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:16.798 -07 000000623 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:16.808 -07 000000623 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:32:16.808 -07 000000623 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:32:16.818 -07 000000623 INF: Y Motor: Moved to 60.7334 after 1430 ms (table move)
17-03-17 17:32:16.818 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178256 mm (DAC = 38940)
17-03-17 17:32:16.818 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:16.818 -07 000000551 INF: FPGA: Recv ZSGSRD 37043
17-03-17 17:32:16.828 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:32:16.828 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:16.828 -07 000000627 INF: FPGA: Recv ZSGSRD 37036
17-03-17 17:32:16.838 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:16.858 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:16.858 -07 000000618 INF: FPGA: Recv ZSGSRD 37042
17-03-17 17:32:16.868 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:32:16.878 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:16.878 -07 000000486 INF: FPGA: Recv ZSGSRD 37039
17-03-17 17:32:16.888 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:32:16.888 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:16.888 -07 000000631 INF: FPGA: Recv ZSGSRD 37040
17-03-17 17:32:16.898 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:16.918 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:16.918 -07 000000462 INF: FPGA: Recv ZSGSRD 37038
17-03-17 17:32:16.928 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:32:16.928 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:16.928 -07 000000486 INF: FPGA: Recv ZSGSRD 37046
17-03-17 17:32:16.938 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:16.948 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:16.948 -07 000000561 INF: FPGA: Recv ZSGSRD 37045
17-03-17 17:32:16.958 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:32:16.958 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:16.958 -07 000000631 INF: FPGA: Recv ZSGSRD 37037
17-03-17 17:32:16.968 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:16.968 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:16.968 -07 000000486 INF: FPGA: Recv ZSGSRD 37038
17-03-17 17:32:16.978 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:16.978 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:16.978 -07 000000486 INF: FPGA: Recv ZPIEZORD 33313
17-03-17 17:32:16.988 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:16.988 -07 000000478 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.942 V. Piezo Error = -8.3 V.
17-03-17 17:32:16.988 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.3 um, Read 10 ADC samples: Avg = 37040 (-177.4 uncal um), Error = 0.9 uncal um, Median = 37040 (-177.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37036 (-177.4 uncal um), Max = 37046 (-177.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:32:16.988 -07 000000478 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37040, posNoise = 6, negNoise = 4
17-03-17 17:32:16.988 -07 000000478 INF: Z Motor: After move to -0.178256, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:16.988 -07 000000478 INF: Z Motor: Settle wait time = 1433 ms, measure time = 168 ms (allowed 150 ms), total time = 1601 ms
17-03-17 17:32:16.988 -07 000000478 INF: Z Motor: Warning: Actual position measuring time = 168 ms, longer than max expected time of 150 ms
17-03-17 17:32:16.988 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 17:32:16.988 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:32:16.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:16.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:16.988 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:16.988 -07 000000631 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:16.988 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:32:16.988 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:16.988 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:32:16.988 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:32:16.998 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:32:16.998 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:32:17.008 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:32:17.008 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:32:17.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:32:17.058 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:32:17.168 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.075228,
17-03-17 17:32:17.258 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:32:17.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:32:17.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:32:17.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:32:17.288 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:32:17.298 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 17:32:17.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 17:32:17.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:32:17.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:17.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:32:17.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:32:17.398 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:17.398 -07 000000486 INF: Autofocus start
17-03-17 17:32:17.398 -07 000000486 INF: MeasureProfile start
17-03-17 17:32:17.398 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:17.408 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:32:17.408 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:32:17.408 -07 000000486 INF: MeasureProfile done
17-03-17 17:32:17.408 -07 000000486 INF: X=-32  Z correction [um]=-0.2344
17-03-17 17:32:17.408 -07 000000486 INF: Autofocus finished
17-03-17 17:32:17.608 -07 000000631 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:32:17.608 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 17:32:17.608 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.178276169741961. ----------
17-03-17 17:32:17.608 -07 000000610 INF: Cycle	2	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:32:17.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37402, sync = True, waitForSettling = True)
17-03-17 17:32:17.618 -07 000000610 INF: Z Motor: Moving to -0.171215 mm, started at -0.178276 mm, distance = 7.06 um
17-03-17 17:32:17.618 -07 000000610 INF: FPGA: Xmit ZDACW 37402\n [Z Motor]
17-03-17 17:32:17.618 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 17:32:17.628 -07 000000610 INF: FPGA: 'ZDACW 37402' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:17.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:17.628 -07 000000478 INF: FPGA: Recv ZDACR 37402
17-03-17 17:32:17.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:17.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:32:17.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:17.788 -07 000000631 INF: FPGA: Recv ZSGSRD 35945
17-03-17 17:32:17.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:17.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:17.798 -07 000000561 INF: FPGA: Recv ZSGSRD 35947
17-03-17 17:32:17.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:17.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:17.808 -07 000000478 INF: FPGA: Recv ZSGSRD 35940
17-03-17 17:32:17.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:17.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:17.818 -07 000000631 INF: FPGA: Recv ZSGSRD 35942
17-03-17 17:32:17.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:17.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:17.828 -07 000000561 INF: FPGA: Recv ZSGSRD 35943
17-03-17 17:32:17.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:17.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:17.838 -07 000000631 INF: FPGA: Recv ZSGSRD 35945
17-03-17 17:32:17.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:17.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:17.848 -07 000000631 INF: FPGA: Recv ZSGSRD 35940
17-03-17 17:32:17.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:17.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:17.858 -07 000000627 INF: FPGA: Recv ZSGSRD 35939
17-03-17 17:32:17.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:17.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:17.868 -07 000000486 INF: FPGA: Recv ZSGSRD 35944
17-03-17 17:32:17.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:17.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:17.878 -07 000000631 INF: FPGA: Recv ZSGSRD 35944
17-03-17 17:32:17.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:17.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:17.888 -07 000000618 INF: FPGA: Recv ZPIEZORD 31848
17-03-17 17:32:17.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:17.898 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.707 V. Piezo Error = -9.0 V.
17-03-17 17:32:17.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35943 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35944 (-170.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35939 (-170.3 uncal um), Max = 35947 (-170.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:32:17.898 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35943, posNoise = 4, negNoise = 4
17-03-17 17:32:17.898 -07 000000610 INF: Z Motor: After move to -0.171215, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:17.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:32:17.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:17.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:17.898 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:17.898 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:32:17.898 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:17.898 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:32:17.898 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:32:17.898 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:17.898 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:32:17.898 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:32:17.898 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:32:17.898 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:32:17.898 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:32:17.898 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:32:17.908 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 17:32:17.908 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:32:17.918 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 17:32:17.918 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:32:17.918 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 17:32:17.918 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:32:17.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37578 150\n [Camera]
17-03-17 17:32:18.118 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:32:18.508 -07 000000631 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:32:18.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:32:18.518 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:18.518 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:18.518 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:32:18.518 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:32:18.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:32:18.518 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:18.518 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:18.518 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:32:18.708 -07 000000631 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37578 775
17-03-17 17:32:18.858 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:32:18.918 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 17:32:18.918 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 17:32:18.918 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:18.918 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 17:32:18.918 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 17:32:18.918 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:18.918 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:32:18.918 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:32:18.918 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:32:18.928 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 17:32:19.048 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:32:19.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:32:19.048 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:19.048 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:19.048 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 17:32:19.048 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:32:19.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:32:19.048 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:19.048 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:19.048 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 17:32:19.238 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:32:19.238 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:32:19.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37578 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-17 17:32:19.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:32:19.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.171228809022449. ------
17-03-17 17:32:19.348 -07 000000631 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17779 mm
17-03-17 17:32:19.348 -07 000000631 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:32:19.348 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:19.348 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 17:32:19.348 -07 000000478 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 17:32:19.348 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38838, sync = True, waitForSettling = False)
17-03-17 17:32:19.348 -07 000000486 INF: Z Motor: Moving to -0.177789 mm, started at -0.171229 mm, distance = -6.56 um
17-03-17 17:32:19.348 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:19.358 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:32:19.358 -07 000000486 INF: FPGA: Xmit ZDACW 38838\n [Z Motor]
17-03-17 17:32:19.358 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:32:19.368 -07 000000486 INF: FPGA: 'ZDACW 38838' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:32:19.368 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:19.368 -07 000000551 INF: FPGA: Recv ZDACR 38838
17-03-17 17:32:19.378 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:19.378 -07 000000486 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 17:32:19.378 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:19.378 -07 000000462 INF: FPGA: Recv YRDPOS 124383
17-03-17 17:32:19.388 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:32:19.388 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 17:32:19.388 -07 000000478 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:19.388 -07 000000478 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:32:19.388 -07 000000478 INF: Y Motor: Moving 1342 steps-19
17-03-17 17:32:19.398 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:32:19.438 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 17:32:19.438 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:32:19.438 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:19.438 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 17:32:19.438 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 17:32:19.438 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:19.438 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:32:19.448 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:32:19.448 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 17:32:19.448 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 17:32:19.588 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:32:19.588 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-17 17:32:19.768 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 17:32:19.768 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 17:32:19.798 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:19.808 -07 000000486 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:32:19.808 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:32:19.808 -07 000000478 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:19.808 -07 000000478 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 17:32:19.808 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.839 mm, average velocity = 2.191 mm/sec
17-03-17 17:32:20.758 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:20.758 -07 000000459 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:32:20.768 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:20.768 -07 000000478 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:20.778 -07 000000478 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:32:20.778 -07 000000478 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:32:20.778 -07 000000478 INF: Y Motor: Moved to 61.5645 after 1431 ms (table move)
17-03-17 17:32:20.788 -07 000000631 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177789 mm (DAC = 38838)
17-03-17 17:32:20.788 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:20.788 -07 000000486 INF: FPGA: Recv ZSGSRD 36969
17-03-17 17:32:20.798 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:32:20.798 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:20.798 -07 000000478 INF: FPGA: Recv ZSGSRD 36962
17-03-17 17:32:20.808 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:20.808 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:20.808 -07 000000486 INF: FPGA: Recv ZSGSRD 36954
17-03-17 17:32:20.818 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:20.818 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:20.818 -07 000000478 INF: FPGA: Recv ZSGSRD 36967
17-03-17 17:32:20.828 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:20.828 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:20.828 -07 000000478 INF: FPGA: Recv ZSGSRD 36969
17-03-17 17:32:20.838 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:20.838 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:20.838 -07 000000478 INF: FPGA: Recv ZSGSRD 36967
17-03-17 17:32:20.848 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:20.848 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:20.848 -07 000000478 INF: FPGA: Recv ZSGSRD 36975
17-03-17 17:32:20.858 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:20.858 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:20.858 -07 000000478 INF: FPGA: Recv ZSGSRD 36971
17-03-17 17:32:20.868 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:20.868 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:20.868 -07 000000551 INF: FPGA: Recv ZSGSRD 36969
17-03-17 17:32:20.878 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:20.878 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:20.878 -07 000000478 INF: FPGA: Recv ZSGSRD 36961
17-03-17 17:32:20.888 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:20.888 -07 000000631 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:20.888 -07 000000551 INF: FPGA: Recv ZPIEZORD 33196
17-03-17 17:32:20.898 -07 000000631 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:20.898 -07 000000631 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.926 V. Piezo Error = -8.3 V.
17-03-17 17:32:20.898 -07 000000631 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36966 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36968 (-176.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 36954 (-176.8 uncal um), Max = 36975 (-177.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 17:32:20.898 -07 000000631 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36966, posNoise = 9, negNoise = 12
17-03-17 17:32:20.898 -07 000000631 INF: Z Motor: After move to -0.177789, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:20.898 -07 000000631 INF: Z Motor: Settle wait time = 1434 ms, measure time = 107 ms (allowed 150 ms), total time = 1541 ms
17-03-17 17:32:20.898 -07 000000631 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:32:20.948 -07 000000631 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 17:32:20.948 -07 000000631 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:32:20.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:20.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:20.948 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:20.948 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:20.948 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:32:20.948 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:20.948 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:32:20.948 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:32:20.958 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:32:20.958 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:32:20.968 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:32:20.968 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 17:32:20.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:32:21.018 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:32:21.218 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:32:21.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:32:21.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:32:21.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:32:21.258 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:32:21.268 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 17:32:21.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 291 ms to get response, and 294 ms overall
17-03-17 17:32:21.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 17:32:21.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:21.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:32:21.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 17:32:21.368 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:21.368 -07 000000627 INF: Autofocus start
17-03-17 17:32:21.368 -07 000000627 INF: MeasureProfile start
17-03-17 17:32:21.368 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:21.378 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:32:21.378 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:32:21.378 -07 000000627 INF: MeasureProfile done
17-03-17 17:32:21.378 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:32:21.378 -07 000000627 INF: Autofocus finished
17-03-17 17:32:21.508 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:32:21.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:32:21.578 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:32:21.578 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:32:21.578 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.17780077804347. ----------
17-03-17 17:32:21.578 -07 000000610 INF: Cycle	2	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:32:21.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37353, sync = True, waitForSettling = True)
17-03-17 17:32:21.588 -07 000000610 INF: Z Motor: Moving to -0.170991 mm, started at -0.177801 mm, distance = 6.81 um
17-03-17 17:32:21.588 -07 000000610 INF: FPGA: Xmit ZDACW 37353\n [Z Motor]
17-03-17 17:32:21.588 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:32:21.598 -07 000000610 INF: FPGA: 'ZDACW 37353' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:21.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:21.598 -07 000000476 INF: FPGA: Recv ZDACR 37353
17-03-17 17:32:21.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:21.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:32:21.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:21.758 -07 000000476 INF: FPGA: Recv ZSGSRD 35906
17-03-17 17:32:21.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:21.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:21.768 -07 000000382 INF: FPGA: Recv ZSGSRD 35910
17-03-17 17:32:21.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:21.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:21.778 -07 000000476 INF: FPGA: Recv ZSGSRD 35910
17-03-17 17:32:21.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:21.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:21.788 -07 000000382 INF: FPGA: Recv ZSGSRD 35908
17-03-17 17:32:21.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:21.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:21.798 -07 000000476 INF: FPGA: Recv ZSGSRD 35910
17-03-17 17:32:21.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:21.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:21.808 -07 000000476 INF: FPGA: Recv ZSGSRD 35906
17-03-17 17:32:21.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:32:21.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:21.818 -07 000000382 INF: FPGA: Recv ZSGSRD 35912
17-03-17 17:32:21.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:21.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:21.828 -07 000000382 INF: FPGA: Recv ZSGSRD 35912
17-03-17 17:32:21.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:21.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:21.838 -07 000000476 INF: FPGA: Recv ZSGSRD 35911
17-03-17 17:32:21.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:21.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:21.848 -07 000000476 INF: FPGA: Recv ZSGSRD 35912
17-03-17 17:32:21.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:21.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:21.858 -07 000000476 INF: FPGA: Recv ZPIEZORD 31784
17-03-17 17:32:21.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:21.868 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -9.1 V.
17-03-17 17:32:21.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35910 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35910 (-170.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35906 (-170.1 uncal um), Max = 35912 (-170.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:32:21.868 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35910, posNoise = 2, negNoise = 4
17-03-17 17:32:21.868 -07 000000610 INF: Z Motor: After move to -0.170991, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:21.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:32:21.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:21.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:21.868 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:21.868 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:21.868 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:32:21.868 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:21.868 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:32:21.868 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:32:21.868 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:32:21.868 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:32:21.868 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:32:21.868 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:32:21.878 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:32:21.878 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:32:21.878 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:32:21.878 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:32:21.878 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:32:21.878 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:32:21.878 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:32:21.878 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:32:21.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37530 150\n [Camera]
17-03-17 17:32:22.088 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:32:22.478 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:32:22.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:32:22.478 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:22.478 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:32:22.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:32:22.478 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:22.478 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:22.478 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:32:22.488 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:22.488 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:32:22.578 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.075228,
17-03-17 17:32:22.668 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37530 775
17-03-17 17:32:22.818 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:32:22.858 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 17:32:22.858 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 17:32:22.858 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:22.858 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 17:32:22.858 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 17:32:22.858 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:22.858 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:32:22.858 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:32:22.868 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:32:22.868 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:32:23.008 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:32:23.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:32:23.008 -07 000000631 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:23.008 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:32:23.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:32:23.008 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:23.018 -07 000000631 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:23.018 -07 000000631 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) start.
17-03-17 17:32:23.018 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:23.018 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:32:23.198 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:32:23.198 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:32:23.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37530 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-17 17:32:23.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:32:23.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.171016810021771. ------
17-03-17 17:32:23.208 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:23.208 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17748 mm
17-03-17 17:32:23.208 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:32:23.208 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:23.208 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 17:32:23.208 -07 000000561 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 17:32:23.208 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38771, sync = True, waitForSettling = False)
17-03-17 17:32:23.208 -07 000000623 INF: Z Motor: Moving to -0.177482 mm, started at -0.171017 mm, distance = -6.47 um
17-03-17 17:32:23.218 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:32:23.218 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:23.218 -07 000000462 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:32:23.228 -07 000000623 INF: FPGA: Xmit ZDACW 38771\n [Z Motor]
17-03-17 17:32:23.228 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:32:23.228 -07 000000561 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:23.228 -07 000000561 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:32:23.228 -07 000000561 INF: Y Motor: Moving 1341 steps-17
17-03-17 17:32:23.228 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:32:23.238 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:32:23.238 -07 000000623 INF: FPGA: 'ZDACW 38771' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:32:23.248 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:32:23.258 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:23.258 -07 000000478 INF: FPGA: Recv ZDACR 38771
17-03-17 17:32:23.268 -07 000000623 INF: FPGA: 'ZDACR' command took 4 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:32:23.268 -07 000000623 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 17:32:23.398 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:32:23.398 -07 000000631 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:32:23.398 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:32:23.398 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:23.398 -07 000000631 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:32:23.398 -07 000000631 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:23.408 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:32:23.408 -07 000000631 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:32:23.408 -07 000000631 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 17:32:23.408 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:32:23.438 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:32:23.438 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:32:23.618 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 17:32:23.618 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:32:23.658 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:23.658 -07 000000382 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:32:23.668 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:23.668 -07 000000561 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:23.668 -07 000000561 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 17:32:23.668 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 17:32:24.618 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:24.618 -07 000000438 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:32:24.628 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:24.628 -07 000000561 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:24.638 -07 000000561 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:32:24.638 -07 000000561 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:32:24.638 -07 000000561 INF: Y Motor: Moved to 62.3960 after 1433 ms (table move)
17-03-17 17:32:24.648 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177482 mm (DAC = 38771)
17-03-17 17:32:24.648 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:24.648 -07 000000627 INF: FPGA: Recv ZSGSRD 36922
17-03-17 17:32:24.658 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:32:24.658 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:24.658 -07 000000561 INF: FPGA: Recv ZSGSRD 36915
17-03-17 17:32:24.668 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:24.668 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:24.668 -07 000000627 INF: FPGA: Recv ZSGSRD 36915
17-03-17 17:32:24.678 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:24.678 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:24.678 -07 000000627 INF: FPGA: Recv ZSGSRD 36916
17-03-17 17:32:24.688 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:24.688 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:24.688 -07 000000627 INF: FPGA: Recv ZSGSRD 36920
17-03-17 17:32:24.698 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:24.698 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:24.698 -07 000000476 INF: FPGA: Recv ZSGSRD 36927
17-03-17 17:32:24.708 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:24.708 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:24.708 -07 000000476 INF: FPGA: Recv ZSGSRD 36919
17-03-17 17:32:24.718 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:32:24.718 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:24.718 -07 000000476 INF: FPGA: Recv ZSGSRD 36917
17-03-17 17:32:24.728 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:24.728 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:24.728 -07 000000476 INF: FPGA: Recv ZSGSRD 36914
17-03-17 17:32:24.738 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:24.738 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:24.738 -07 000000476 INF: FPGA: Recv ZSGSRD 36914
17-03-17 17:32:24.748 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:24.748 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:25.658 -07 000000631 INF: FPGA: Recv ZPIEZORD 33166
17-03-17 17:32:25.658 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 900 ms to get response, and 910 ms overall
17-03-17 17:32:25.658 -07 000000409 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.916 V. Piezo Error = -8.3 V.
17-03-17 17:32:25.658 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36918 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36916 (-176.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36914 (-176.6 uncal um), Max = 36927 (-176.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:32:25.658 -07 000000409 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36918, posNoise = 9, negNoise = 4
17-03-17 17:32:25.658 -07 000000409 INF: Z Motor: After move to -0.177482, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:25.658 -07 000000409 INF: Z Motor: Settle wait time = 1436 ms, measure time = 1008 ms (allowed 150 ms), total time = 2444 ms
17-03-17 17:32:25.658 -07 000000409 INF: Z Motor: Warning: Actual position measuring time = 1008 ms, longer than max expected time of 150 ms
17-03-17 17:32:25.658 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2447 ms
17-03-17 17:32:25.658 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:32:25.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:25.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:25.658 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:25.668 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:32:25.668 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:25.668 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:25.668 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:32:25.668 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:32:25.668 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:32:25.668 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:32:25.678 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:32:25.678 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:32:25.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:32:25.718 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:32:25.918 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:32:25.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:32:25.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:32:25.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1154255176, 0x0, 559484976) start.
17-03-17 17:32:25.958 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:32:25.958 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 17:32:25.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 17:32:26.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1154255176, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:32:26.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:26.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:32:26.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:32:26.058 -07 000000486 INF: Autofocus start
17-03-17 17:32:26.058 -07 000000486 INF: MeasureProfile start
17-03-17 17:32:26.058 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:26.058 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:26.068 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:32:26.068 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:32:26.068 -07 000000486 INF: MeasureProfile done
17-03-17 17:32:26.068 -07 000000486 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 17:32:26.068 -07 000000486 INF: Autofocus finished
17-03-17 17:32:26.268 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:32:26.268 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 17:32:26.268 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.177492415860666. ----------
17-03-17 17:32:26.278 -07 000000610 INF: Cycle	2	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:32:26.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37213, sync = True, waitForSettling = True)
17-03-17 17:32:26.278 -07 000000610 INF: Z Motor: Moving to -0.170350 mm, started at -0.177492 mm, distance = 7.14 um
17-03-17 17:32:26.278 -07 000000610 INF: FPGA: Xmit ZDACW 37213\n [Z Motor]
17-03-17 17:32:26.278 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:32:26.288 -07 000000610 INF: FPGA: 'ZDACW 37213' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:32:26.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:26.288 -07 000000462 INF: FPGA: Recv ZDACR 37213
17-03-17 17:32:26.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:26.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:32:26.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:26.448 -07 000000486 INF: FPGA: Recv ZSGSRD 35813
17-03-17 17:32:26.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:26.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:26.458 -07 000000462 INF: FPGA: Recv ZSGSRD 35808
17-03-17 17:32:26.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:26.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:26.468 -07 000000382 INF: FPGA: Recv ZSGSRD 35809
17-03-17 17:32:26.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:26.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:26.478 -07 000000382 INF: FPGA: Recv ZSGSRD 35804
17-03-17 17:32:26.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:26.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:26.488 -07 000000382 INF: FPGA: Recv ZSGSRD 35809
17-03-17 17:32:26.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:26.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:26.498 -07 000000382 INF: FPGA: Recv ZSGSRD 35811
17-03-17 17:32:26.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:26.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:26.508 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:32:26.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:32:26.508 -07 000000631 INF: FPGA: Recv ZSGSRD 35809
17-03-17 17:32:26.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:26.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:26.518 -07 000000438 INF: FPGA: Recv ZSGSRD 35809
17-03-17 17:32:26.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:26.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:26.528 -07 000000438 INF: FPGA: Recv ZSGSRD 35807
17-03-17 17:32:26.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:26.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:26.538 -07 000000438 INF: FPGA: Recv ZSGSRD 35804
17-03-17 17:32:26.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:26.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:26.548 -07 000000631 INF: FPGA: Recv ZPIEZORD 31686
17-03-17 17:32:26.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:26.558 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -9.1 V.
17-03-17 17:32:26.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35808 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35809 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35804 (-169.5 uncal um), Max = 35813 (-169.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:32:26.558 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35808, posNoise = 5, negNoise = 4
17-03-17 17:32:26.558 -07 000000610 INF: Z Motor: After move to -0.170350, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:26.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:32:26.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:26.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:26.558 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:26.558 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:32:26.558 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:32:26.558 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:26.558 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:32:26.558 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:32:26.558 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:32:26.558 -07 000000631 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:26.558 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:32:26.558 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:32:26.568 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:32:26.568 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:32:26.568 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 17:32:26.568 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:32:26.578 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:32:26.578 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:32:26.578 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:32:26.578 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:32:26.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37390 150\n [Camera]
17-03-17 17:32:26.778 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:32:27.168 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:32:27.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:32:27.168 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:27.168 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:27.168 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:32:27.178 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:32:27.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:32:27.178 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:27.178 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:27.178 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:32:27.358 -07 000000631 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37390 775
17-03-17 17:32:27.508 -07 000000631 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:32:27.568 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 17:32:27.568 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 17:32:27.568 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:27.568 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:32:27.568 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 17:32:27.578 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 17:32:27.578 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 17:32:27.578 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:27.578 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:32:27.588 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 17:32:27.698 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:32:27.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:32:27.698 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:27.698 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:27.698 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 17:32:27.708 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:32:27.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:32:27.708 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:27.708 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:27.708 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 17:32:27.888 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:32:27.888 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:32:27.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37390 150' command took 2 ms to send, 1309 ms to get response, and 1313 ms overall
17-03-17 17:32:28.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:32:28.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.170361540383311. ------
17-03-17 17:32:28.008 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17717 mm
17-03-17 17:32:28.008 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:32:28.018 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:28.018 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.086108,
17-03-17 17:32:28.018 -07 000000631 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 17:32:28.018 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:28.018 -07 000000631 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 17:32:28.018 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38703, sync = True, waitForSettling = False)
17-03-17 17:32:28.018 -07 000000486 INF: Z Motor: Moving to -0.177171 mm, started at -0.170362 mm, distance = -6.81 um
17-03-17 17:32:28.028 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:28.028 -07 000000631 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:28.028 -07 000000459 INF: FPGA: Recv YRDPOS 127788
17-03-17 17:32:28.038 -07 000000631 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 17:32:28.038 -07 000000631 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:28.038 -07 000000631 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:32:28.038 -07 000000631 INF: Y Motor: Moving 1338 steps-14
17-03-17 17:32:28.048 -07 000000486 INF: FPGA: Xmit ZDACW 38703\n [Z Motor]
17-03-17 17:32:28.048 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:32:28.058 -07 000000409 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:32:28.058 -07 000000486 INF: FPGA: 'ZDACW 38703' command took 0 ms to send, 0 ms to get response, and 35 ms overall
17-03-17 17:32:28.068 -07 000000631 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:32:28.088 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:28.088 -07 000000382 INF: FPGA: Recv ZDACR 38703
17-03-17 17:32:28.098 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 17:32:28.098 -07 000000486 INF: Z Motor: MoveAbsStepped took 75 ms (did NOT wait for settling yet))
17-03-17 17:32:28.108 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 17:32:28.108 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 17:32:28.108 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:28.108 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 17:32:28.108 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 17:32:28.108 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:28.108 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:32:28.108 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:32:28.108 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 17:32:28.118 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 17:32:28.258 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:32:28.258 -07 000000409 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 17:32:28.438 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 17:32:28.438 -07 000000631 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 404 ms overall
17-03-17 17:32:28.468 -07 000000631 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:28.478 -07 000000478 INF: FPGA: Recv YRDPOS 129484
17-03-17 17:32:28.478 -07 000000631 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 17:32:28.478 -07 000000631 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:28.478 -07 000000631 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 17:32:28.478 -07 000000631 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.837 mm, average velocity = 2.071 mm/sec
17-03-17 17:32:29.428 -07 000000631 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:29.428 -07 000000476 INF: FPGA: Recv YRDPOS 129484
17-03-17 17:32:29.438 -07 000000631 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:29.438 -07 000000631 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:29.458 -07 000000631 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:32:29.458 -07 000000631 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:32:29.458 -07 000000631 INF: Y Motor: Moved to 63.2246 after 1437 ms (table move)
17-03-17 17:32:29.458 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177171 mm (DAC = 38703)
17-03-17 17:32:29.458 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:29.458 -07 000000442 INF: FPGA: Recv ZSGSRD 36874
17-03-17 17:32:29.468 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:32:29.468 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:29.468 -07 000000382 INF: FPGA: Recv ZSGSRD 36865
17-03-17 17:32:29.478 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:29.478 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:29.478 -07 000000627 INF: FPGA: Recv ZSGSRD 36864
17-03-17 17:32:29.488 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:29.488 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:29.488 -07 000000459 INF: FPGA: Recv ZSGSRD 36864
17-03-17 17:32:29.498 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:29.498 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:29.498 -07 000000551 INF: FPGA: Recv ZSGSRD 36871
17-03-17 17:32:29.508 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:29.508 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:29.508 -07 000000382 INF: FPGA: Recv ZSGSRD 36871
17-03-17 17:32:29.518 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:29.518 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:29.518 -07 000000623 INF: FPGA: Recv ZSGSRD 36877
17-03-17 17:32:29.528 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:29.528 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:29.528 -07 000000475 INF: FPGA: Recv ZSGSRD 36872
17-03-17 17:32:29.538 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:29.538 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:29.538 -07 000000551 INF: FPGA: Recv ZSGSRD 36873
17-03-17 17:32:29.548 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:29.548 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:29.548 -07 000000631 INF: FPGA: Recv ZSGSRD 36871
17-03-17 17:32:29.558 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:29.558 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:29.558 -07 000000561 INF: FPGA: Recv ZPIEZORD 33085
17-03-17 17:32:29.568 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:29.568 -07 000000462 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.906 V. Piezo Error = -8.4 V.
17-03-17 17:32:29.568 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36870 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36871 (-176.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36864 (-176.3 uncal um), Max = 36877 (-176.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:32:29.568 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36870, posNoise = 7, negNoise = 6
17-03-17 17:32:29.568 -07 000000462 INF: Z Motor: After move to -0.177171, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:29.568 -07 000000462 INF: Z Motor: Settle wait time = 1439 ms, measure time = 107 ms (allowed 150 ms), total time = 1546 ms
17-03-17 17:32:29.568 -07 000000462 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:32:29.618 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 17:32:29.618 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:32:29.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:29.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:29.618 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:29.618 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:29.618 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:32:29.618 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:29.618 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:32:29.618 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:32:29.628 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:32:29.628 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:32:29.628 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:32:29.628 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:32:29.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:32:29.678 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:32:29.878 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:32:29.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:32:29.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:32:29.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:32:29.918 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:32:29.918 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:32:29.918 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 17:32:29.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:32:29.998 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:29.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:32:29.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:32:30.018 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:30.018 -07 000000476 INF: Autofocus start
17-03-17 17:32:30.018 -07 000000476 INF: MeasureProfile start
17-03-17 17:32:30.018 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:30.028 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:32:30.028 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:32:30.038 -07 000000476 INF: MeasureProfile done
17-03-17 17:32:30.038 -07 000000476 INF: X=0  Z correction [um]=-0.0713522
17-03-17 17:32:30.038 -07 000000476 INF: Autofocus finished
17-03-17 17:32:30.228 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:32:30.228 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:32:30.228 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.177184053677861. ----------
17-03-17 17:32:30.228 -07 000000610 INF: Cycle	2	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:32:30.238 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37200, sync = True, waitForSettling = True)
17-03-17 17:32:30.238 -07 000000610 INF: Z Motor: Moving to -0.170291 mm, started at -0.177184 mm, distance = 6.89 um
17-03-17 17:32:30.238 -07 000000610 INF: FPGA: Xmit ZDACW 37200\n [Z Motor]
17-03-17 17:32:30.238 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 17:32:30.248 -07 000000610 INF: FPGA: 'ZDACW 37200' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:30.248 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:30.248 -07 000000382 INF: FPGA: Recv ZDACR 37200
17-03-17 17:32:30.258 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:30.258 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:32:30.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:30.408 -07 000000626 INF: FPGA: Recv ZSGSRD 35799
17-03-17 17:32:30.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:30.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:30.418 -07 000000478 INF: FPGA: Recv ZSGSRD 35801
17-03-17 17:32:30.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:30.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:30.428 -07 000000608 INF: FPGA: Recv ZSGSRD 35798
17-03-17 17:32:30.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:30.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:30.438 -07 000000551 INF: FPGA: Recv ZSGSRD 35802
17-03-17 17:32:30.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:30.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:30.448 -07 000000631 INF: FPGA: Recv ZSGSRD 35799
17-03-17 17:32:30.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:30.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:30.458 -07 000000486 INF: FPGA: Recv ZSGSRD 35794
17-03-17 17:32:30.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:30.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:30.468 -07 000000475 INF: FPGA: Recv ZSGSRD 35796
17-03-17 17:32:30.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:30.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:30.478 -07 000000623 INF: FPGA: Recv ZSGSRD 35800
17-03-17 17:32:30.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:30.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:30.488 -07 000000551 INF: FPGA: Recv ZSGSRD 35804
17-03-17 17:32:30.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:30.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:30.498 -07 000000442 INF: FPGA: Recv ZSGSRD 35794
17-03-17 17:32:30.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:30.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:30.508 -07 000000486 INF: FPGA: Recv ZPIEZORD 31655
17-03-17 17:32:30.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:30.518 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.676 V. Piezo Error = -9.1 V.
17-03-17 17:32:30.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35799 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35799 (-169.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35794 (-169.4 uncal um), Max = 35804 (-169.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:32:30.518 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35799, posNoise = 5, negNoise = 5
17-03-17 17:32:30.518 -07 000000610 INF: Z Motor: After move to -0.170291, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:30.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:32:30.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:30.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:30.518 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:32:30.518 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:30.518 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:30.518 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:30.518 -07 000000631 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:32:30.518 -07 000000631 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:32:30.518 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:32:30.518 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:32:30.518 -07 000000631 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:32:30.518 -07 000000631 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:32:30.518 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:32:30.518 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:32:30.518 -07 000000631 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:32:30.518 -07 000000631 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:32:30.528 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:32:30.528 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:32:30.528 -07 000000631 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:32:30.528 -07 000000631 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:32:30.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37377 150\n [Camera]
17-03-17 17:32:30.738 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:32:31.128 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:32:31.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:32:31.128 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:31.128 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:32:31.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:32:31.128 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:31.128 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:31.128 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:32:31.138 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:31.138 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:32:31.318 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37377 775
17-03-17 17:32:31.468 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:32:31.508 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 17:32:31.508 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:32:31.508 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:31.508 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:32:31.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:32:31.508 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:32:31.508 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:32:31.508 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:31.508 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:32:31.508 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:32:31.508 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:32:31.518 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:32:31.658 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:32:31.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:32:31.658 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:31.658 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:32:31.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:32:31.658 -07 000000442 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:31.668 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:31.668 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:32:31.668 -07 000000442 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:31.668 -07 000000442 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 17:32:31.848 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:32:31.848 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:32:31.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37377 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-17 17:32:31.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:32:31.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.224609375, Z-Position -0.170303722474035. ------
17-03-17 17:32:31.858 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:31.858 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17661 mm
17-03-17 17:32:31.858 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:32:31.858 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:31.858 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 17:32:31.858 -07 000000551 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 17:32:31.858 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38581, sync = True, waitForSettling = False)
17-03-17 17:32:31.858 -07 000000626 INF: Z Motor: Moving to -0.176612 mm, started at -0.170304 mm, distance = -6.31 um
17-03-17 17:32:31.868 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:31.868 -07 000000626 INF: FPGA: Xmit ZDACW 38581\n [Z Motor]
17-03-17 17:32:31.868 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 17:32:31.878 -07 000000626 INF: FPGA: 'ZDACW 38581' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:32:31.878 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:31.878 -07 000000475 INF: FPGA: Recv YRDPOS 129485
17-03-17 17:32:31.888 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:32:31.888 -07 000000551 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:31.888 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:32:31.888 -07 000000551 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:32:31.888 -07 000000551 INF: Y Motor: Moving 1340 steps-16
17-03-17 17:32:31.898 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:31.898 -07 000000476 INF: FPGA: Recv ZDACR 38581
17-03-17 17:32:31.908 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:32:31.908 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:32:31.908 -07 000000626 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 17:32:32.058 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 17:32:32.058 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:32:32.058 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:32.068 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:32:32.068 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 17:32:32.088 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:32:32.088 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 17:32:32.178 -07 000000442 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 512 ms.
17-03-17 17:32:32.178 -07 000000442 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 512 ms.
17-03-17 17:32:32.178 -07 000000442 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:32.188 -07 000000442 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:32:32.188 -07 000000442 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 530 ms.
17-03-17 17:32:32.278 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 17:32:32.278 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 393 ms overall
17-03-17 17:32:32.308 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:32.318 -07 000000442 INF: FPGA: Recv YRDPOS 131189
17-03-17 17:32:32.318 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:32:32.318 -07 000000551 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:32.318 -07 000000551 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 17:32:32.318 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.132 mm/sec
17-03-17 17:32:33.268 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:33.268 -07 000000442 INF: FPGA: Recv YRDPOS 131189
17-03-17 17:32:33.278 -07 000000551 INF: FPGA: 'YRDPOS' command took 4 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:33.278 -07 000000551 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:33.288 -07 000000551 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:32:33.288 -07 000000551 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:32:33.288 -07 000000551 INF: Y Motor: Moved to 64.0571 after 1434 ms (table move)
17-03-17 17:32:33.298 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176612 mm (DAC = 38581)
17-03-17 17:32:33.298 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:33.298 -07 000000561 INF: FPGA: Recv ZSGSRD 36789
17-03-17 17:32:33.308 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:32:33.308 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:33.308 -07 000000551 INF: FPGA: Recv ZSGSRD 36776
17-03-17 17:32:33.318 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:33.318 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:33.318 -07 000000476 INF: FPGA: Recv ZSGSRD 36777
17-03-17 17:32:33.328 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:33.328 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:33.328 -07 000000561 INF: FPGA: Recv ZSGSRD 36780
17-03-17 17:32:33.338 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:33.338 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:33.338 -07 000000476 INF: FPGA: Recv ZSGSRD 36778
17-03-17 17:32:33.348 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:33.348 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:33.348 -07 000000442 INF: FPGA: Recv ZSGSRD 36788
17-03-17 17:32:33.358 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:33.358 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:33.358 -07 000000626 INF: FPGA: Recv ZSGSRD 36783
17-03-17 17:32:33.368 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:33.368 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:33.368 -07 000000442 INF: FPGA: Recv ZSGSRD 36777
17-03-17 17:32:33.378 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:33.378 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:33.378 -07 000000476 INF: FPGA: Recv ZSGSRD 36781
17-03-17 17:32:33.388 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:33.388 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:33.388 -07 000000442 INF: FPGA: Recv ZSGSRD 36776
17-03-17 17:32:33.398 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:33.398 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:33.398 -07 000000626 INF: FPGA: Recv ZPIEZORD 32984
17-03-17 17:32:33.408 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:33.408 -07 000000627 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.887 V. Piezo Error = -8.4 V.
17-03-17 17:32:33.408 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36780 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36779 (-175.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36776 (-175.7 uncal um), Max = 36789 (-175.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:32:33.408 -07 000000627 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36780, posNoise = 9, negNoise = 4
17-03-17 17:32:33.408 -07 000000627 INF: Z Motor: After move to -0.176612, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:33.408 -07 000000627 INF: Z Motor: Settle wait time = 1438 ms, measure time = 108 ms (allowed 150 ms), total time = 1546 ms
17-03-17 17:32:33.408 -07 000000627 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:32:33.438 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.101034,
17-03-17 17:32:33.458 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 17:32:33.458 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:32:33.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:33.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:33.458 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:33.458 -07 000000442 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:33.458 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:32:33.458 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:33.458 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:32:33.458 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:32:33.468 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:32:33.468 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:32:33.478 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:32:33.478 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:32:33.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:32:33.528 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:32:33.728 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:32:33.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:32:33.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:32:33.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:32:33.768 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:32:33.768 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 17:32:33.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 17:32:33.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:32:33.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:33.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:32:33.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 17:32:33.868 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:33.868 -07 000000618 INF: Autofocus start
17-03-17 17:32:33.868 -07 000000618 INF: MeasureProfile start
17-03-17 17:32:33.868 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:33.878 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:32:33.878 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:32:33.878 -07 000000618 INF: MeasureProfile done
17-03-17 17:32:33.878 -07 000000618 INF: X=32  Z correction [um]=0.09220707
17-03-17 17:32:33.878 -07 000000618 INF: Autofocus finished
17-03-17 17:32:34.078 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:32:34.078 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:32:34.078 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.176605874585103. ----------
17-03-17 17:32:34.078 -07 000000610 INF: Cycle	2	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:32:34.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37114, sync = True, waitForSettling = True)
17-03-17 17:32:34.088 -07 000000610 INF: Z Motor: Moving to -0.169897 mm, started at -0.176606 mm, distance = 6.71 um
17-03-17 17:32:34.088 -07 000000610 INF: FPGA: Xmit ZDACW 37114\n [Z Motor]
17-03-17 17:32:34.088 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:32:34.098 -07 000000610 INF: FPGA: 'ZDACW 37114' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:34.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:34.098 -07 000000627 INF: FPGA: Recv ZDACR 37114
17-03-17 17:32:34.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:34.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:32:34.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:34.258 -07 000000618 INF: FPGA: Recv ZSGSRD 35734
17-03-17 17:32:34.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:34.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:34.268 -07 000000476 INF: FPGA: Recv ZSGSRD 35735
17-03-17 17:32:34.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:34.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:34.278 -07 000000627 INF: FPGA: Recv ZSGSRD 35742
17-03-17 17:32:34.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:34.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:34.288 -07 000000442 INF: FPGA: Recv ZSGSRD 35736
17-03-17 17:32:34.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:34.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:34.298 -07 000000618 INF: FPGA: Recv ZSGSRD 35738
17-03-17 17:32:34.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:34.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:34.308 -07 000000626 INF: FPGA: Recv ZSGSRD 35743
17-03-17 17:32:34.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:34.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:34.318 -07 000000551 INF: FPGA: Recv ZSGSRD 35738
17-03-17 17:32:34.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:34.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:34.328 -07 000000442 INF: FPGA: Recv ZSGSRD 35742
17-03-17 17:32:34.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:34.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:34.338 -07 000000382 INF: FPGA: Recv ZSGSRD 35735
17-03-17 17:32:34.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:34.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:34.348 -07 000000442 INF: FPGA: Recv ZSGSRD 35735
17-03-17 17:32:34.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:34.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:34.358 -07 000000627 INF: FPGA: Recv ZPIEZORD 31562
17-03-17 17:32:34.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:34.368 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.663 V. Piezo Error = -9.2 V.
17-03-17 17:32:34.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35738 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35737 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35734 (-169.0 uncal um), Max = 35743 (-169.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:32:34.368 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35738, posNoise = 5, negNoise = 4
17-03-17 17:32:34.368 -07 000000610 INF: Z Motor: After move to -0.169897, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:34.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:32:34.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:34.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:34.368 -07 000000442 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:34.368 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:32:34.368 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:32:34.368 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:32:34.368 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:34.368 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:32:34.368 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:32:34.368 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:32:34.368 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:32:34.368 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:34.368 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:32:34.368 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:32:34.368 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:32:34.368 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:32:34.378 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:32:34.378 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:32:34.388 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:32:34.388 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:32:34.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37290 150\n [Camera]
17-03-17 17:32:34.588 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:32:34.978 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 17:32:34.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 17:32:34.978 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:34.978 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 17:32:34.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 17:32:34.978 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:34.988 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:34.988 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:32:34.988 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:34.988 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:32:35.168 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37290 775
17-03-17 17:32:35.318 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:32:35.358 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:32:35.358 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 17:32:35.358 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:35.358 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:32:35.358 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 17:32:35.358 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:35.358 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:32:35.368 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:32:35.368 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:32:35.368 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:32:35.508 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:32:35.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:32:35.508 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:35.508 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:35.508 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:32:35.508 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:32:35.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:32:35.518 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:35.518 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:35.518 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1137380112, 0x0, 418435064) start.
17-03-17 17:32:35.698 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:32:35.698 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:32:35.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37290 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:32:35.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:32:35.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.169911845533388. ------
17-03-17 17:32:35.708 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:35.708 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17638 mm
17-03-17 17:32:35.708 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:32:35.708 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:35.708 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 17:32:35.708 -07 000000626 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 17:32:35.708 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38531, sync = True, waitForSettling = False)
17-03-17 17:32:35.708 -07 000000551 INF: Z Motor: Moving to -0.176384 mm, started at -0.169912 mm, distance = -6.47 um
17-03-17 17:32:35.718 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:35.718 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:35.718 -07 000000442 INF: FPGA: Recv YRDPOS 131190
17-03-17 17:32:35.728 -07 000000551 INF: FPGA: Xmit ZDACW 38531\n [Z Motor]
17-03-17 17:32:35.728 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:32:35.728 -07 000000626 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:35.728 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 17:32:35.728 -07 000000626 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:32:35.728 -07 000000626 INF: Y Motor: Moving 1336 steps-11
17-03-17 17:32:35.738 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:32:35.738 -07 000000551 INF: FPGA: 'ZDACW 38531' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:32:35.748 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:32:35.758 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:35.758 -07 000000442 INF: FPGA: Recv ZDACR 38531
17-03-17 17:32:35.768 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:32:35.768 -07 000000551 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 17:32:35.888 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:32:35.888 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:32:35.888 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:35.888 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1137380112, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:32:35.888 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:32:35.888 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:35.898 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:32:35.898 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:32:35.898 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:32:35.898 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:32:35.938 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:32:35.938 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-17 17:32:36.118 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 17:32:36.118 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 17:32:36.148 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:36.158 -07 000000551 INF: FPGA: Recv YRDPOS 132872
17-03-17 17:32:36.158 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:32:36.158 -07 000000626 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:36.158 -07 000000626 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 17:32:36.158 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.835 mm, average velocity = 2.137 mm/sec
17-03-17 17:32:36.508 -07 000000442 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:32:36.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:32:37.108 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:37.108 -07 000000409 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:32:37.118 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:37.118 -07 000000626 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:37.138 -07 000000626 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:32:37.138 -07 000000626 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:32:37.138 -07 000000626 INF: Y Motor: Moved to 64.8794 after 1426 ms (table move)
17-03-17 17:32:37.138 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176384 mm (DAC = 38531)
17-03-17 17:32:37.138 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:37.138 -07 000000627 INF: FPGA: Recv ZSGSRD 36741
17-03-17 17:32:37.148 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:32:37.148 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:37.148 -07 000000627 INF: FPGA: Recv ZSGSRD 36746
17-03-17 17:32:37.158 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:37.158 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:37.158 -07 000000627 INF: FPGA: Recv ZSGSRD 36738
17-03-17 17:32:37.168 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:37.168 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:37.168 -07 000000627 INF: FPGA: Recv ZSGSRD 36748
17-03-17 17:32:37.178 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:37.178 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:37.178 -07 000000442 INF: FPGA: Recv ZSGSRD 36735
17-03-17 17:32:37.188 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:37.188 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:37.188 -07 000000409 INF: FPGA: Recv ZSGSRD 36752
17-03-17 17:32:37.198 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:37.198 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:37.198 -07 000000409 INF: FPGA: Recv ZSGSRD 36755
17-03-17 17:32:37.208 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:37.208 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:37.208 -07 000000409 INF: FPGA: Recv ZSGSRD 36741
17-03-17 17:32:37.218 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:37.218 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:37.218 -07 000000409 INF: FPGA: Recv ZSGSRD 36750
17-03-17 17:32:37.228 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:37.228 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:37.228 -07 000000442 INF: FPGA: Recv ZSGSRD 36743
17-03-17 17:32:37.238 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:37.238 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:37.238 -07 000000442 INF: FPGA: Recv ZPIEZORD 32903
17-03-17 17:32:37.248 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:37.248 -07 000000476 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.879 V. Piezo Error = -8.5 V.
17-03-17 17:32:37.248 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36745 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36744 (-175.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36735 (-175.4 uncal um), Max = 36755 (-175.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:32:37.248 -07 000000476 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36745, posNoise = 10, negNoise = 10
17-03-17 17:32:37.248 -07 000000476 INF: Z Motor: After move to -0.176384, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:37.248 -07 000000476 INF: Z Motor: Settle wait time = 1429 ms, measure time = 108 ms (allowed 150 ms), total time = 1537 ms
17-03-17 17:32:37.248 -07 000000476 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:32:37.298 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 17:32:37.298 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:32:37.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:37.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:37.298 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:37.298 -07 000000442 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:37.298 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:32:37.298 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:37.298 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:32:37.298 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:32:37.308 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:32:37.308 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:32:37.318 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:32:37.318 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:32:37.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:32:37.368 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:32:37.568 -07 000000442 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:32:37.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:32:37.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:32:37.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172802376, 0x0, 559484976) start.
17-03-17 17:32:37.608 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:32:37.608 -07 000000442 INF: FPGA: Recv CAMSNAP
17-03-17 17:32:37.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 17:32:37.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172802376, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:32:37.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:37.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:32:37.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:32:37.708 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:37.708 -07 000000442 INF: Autofocus start
17-03-17 17:32:37.708 -07 000000442 INF: MeasureProfile start
17-03-17 17:32:37.708 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:37.718 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:32:37.718 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:32:37.728 -07 000000442 INF: MeasureProfile done
17-03-17 17:32:37.728 -07 000000442 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 17:32:37.728 -07 000000442 INF: Autofocus finished
17-03-17 17:32:37.918 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:32:37.918 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 17:32:37.918 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.176381027160141. ----------
17-03-17 17:32:37.918 -07 000000610 INF: Cycle	2	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:32:37.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37011, sync = True, waitForSettling = True)
17-03-17 17:32:37.928 -07 000000610 INF: Z Motor: Moving to -0.169425 mm, started at -0.176381 mm, distance = 6.96 um
17-03-17 17:32:37.928 -07 000000610 INF: FPGA: Xmit ZDACW 37011\n [Z Motor]
17-03-17 17:32:37.928 -07 000000442 INF: FPGA: Recv ZDACW
17-03-17 17:32:37.938 -07 000000610 INF: FPGA: 'ZDACW 37011' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:37.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:37.938 -07 000000409 INF: FPGA: Recv ZDACR 37011
17-03-17 17:32:37.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:37.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:32:38.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:38.098 -07 000000442 INF: FPGA: Recv ZSGSRD 35662
17-03-17 17:32:38.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:38.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:38.108 -07 000000608 INF: FPGA: Recv ZSGSRD 35668
17-03-17 17:32:38.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:38.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:38.118 -07 000000409 INF: FPGA: Recv ZSGSRD 35657
17-03-17 17:32:38.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:38.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:38.128 -07 000000608 INF: FPGA: Recv ZSGSRD 35662
17-03-17 17:32:38.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:38.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:38.138 -07 000000409 INF: FPGA: Recv ZSGSRD 35663
17-03-17 17:32:38.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:38.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:38.148 -07 000000409 INF: FPGA: Recv ZSGSRD 35667
17-03-17 17:32:38.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:38.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:38.158 -07 000000551 INF: FPGA: Recv ZSGSRD 35671
17-03-17 17:32:38.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:38.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:38.168 -07 000000608 INF: FPGA: Recv ZSGSRD 35664
17-03-17 17:32:38.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:38.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:38.178 -07 000000409 INF: FPGA: Recv ZSGSRD 35668
17-03-17 17:32:38.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:38.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:38.188 -07 000000608 INF: FPGA: Recv ZSGSRD 35663
17-03-17 17:32:38.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:38.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:38.198 -07 000000551 INF: FPGA: Recv ZPIEZORD 31469
17-03-17 17:32:38.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:38.208 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.648 V. Piezo Error = -9.2 V.
17-03-17 17:32:38.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35664 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35664 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35657 (-168.5 uncal um), Max = 35671 (-168.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:32:38.208 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35664, posNoise = 7, negNoise = 7
17-03-17 17:32:38.208 -07 000000610 INF: Z Motor: After move to -0.169425, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:38.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:32:38.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:38.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:38.208 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:38.208 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:38.208 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:32:38.208 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:38.208 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:32:38.208 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:32:38.208 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:32:38.208 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:32:38.208 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:32:38.208 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:32:38.208 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:32:38.208 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:32:38.208 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:32:38.208 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:32:38.218 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:32:38.218 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:32:38.218 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:32:38.218 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 11 ms.
17-03-17 17:32:38.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37188 150\n [Camera]
17-03-17 17:32:38.428 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:32:38.798 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.095593,
17-03-17 17:32:38.818 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:32:38.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:32:38.818 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:38.818 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:38.818 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-17 17:32:38.818 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:32:38.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:32:38.818 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:38.818 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:38.818 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:32:39.008 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37188 775
17-03-17 17:32:39.158 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:32:39.198 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:32:39.198 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:32:39.198 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:39.198 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:32:39.198 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 17:32:39.198 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:39.198 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:32:39.198 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:32:39.198 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:32:39.208 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:32:39.348 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:32:39.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:32:39.348 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:39.348 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:39.348 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:32:39.348 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:32:39.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:32:39.348 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:39.348 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:39.348 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 17:32:39.538 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 17:32:39.538 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:32:39.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37188 150' command took 2 ms to send, 1306 ms to get response, and 1315 ms overall
17-03-17 17:32:39.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:32:39.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.169436453834898. ------
17-03-17 17:32:39.548 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17609 mm
17-03-17 17:32:39.548 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:32:39.548 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:39.548 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 17:32:39.548 -07 000000409 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 17:32:39.548 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38466, sync = True, waitForSettling = False)
17-03-17 17:32:39.548 -07 000000459 INF: Z Motor: Moving to -0.176086 mm, started at -0.169436 mm, distance = -6.65 um
17-03-17 17:32:39.548 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:39.558 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:32:39.558 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:39.558 -07 000000438 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:32:39.568 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:32:39.568 -07 000000409 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:39.568 -07 000000409 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:32:39.568 -07 000000409 INF: Y Motor: Moving 1349 steps-28
17-03-17 17:32:39.568 -07 000000459 INF: FPGA: Xmit ZDACW 38466\n [Z Motor]
17-03-17 17:32:39.568 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 17:32:39.578 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:32:39.578 -07 000000459 INF: FPGA: 'ZDACW 38466' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 17:32:39.588 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:32:39.598 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:39.598 -07 000000438 INF: FPGA: Recv ZDACR 38466
17-03-17 17:32:39.608 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:32:39.608 -07 000000459 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 17:32:39.738 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 17:32:39.738 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 17:32:39.738 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:39.748 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:32:39.748 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 17:32:39.748 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 17:32:39.748 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 17:32:39.748 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:39.758 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:32:39.758 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 17:32:39.778 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:32:39.778 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 224 ms overall
17-03-17 17:32:39.958 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 17:32:39.958 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:32:39.998 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:39.998 -07 000000475 INF: FPGA: Recv YRDPOS 134583
17-03-17 17:32:40.008 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:40.008 -07 000000409 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:40.008 -07 000000409 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 17:32:40.008 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.119 mm/sec
17-03-17 17:32:40.958 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:40.958 -07 000000486 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:32:40.968 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:40.968 -07 000000409 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:40.978 -07 000000409 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:32:40.988 -07 000000409 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:32:40.988 -07 000000409 INF: Y Motor: Moved to 65.7148 after 1435 ms (table move)
17-03-17 17:32:40.988 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176086 mm (DAC = 38466)
17-03-17 17:32:40.988 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:40.988 -07 000000409 INF: FPGA: Recv ZSGSRD 36702
17-03-17 17:32:40.998 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:32:40.998 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:40.998 -07 000000409 INF: FPGA: Recv ZSGSRD 36693
17-03-17 17:32:41.008 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:41.008 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:41.008 -07 000000409 INF: FPGA: Recv ZSGSRD 36699
17-03-17 17:32:41.018 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:41.018 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:41.018 -07 000000409 INF: FPGA: Recv ZSGSRD 36702
17-03-17 17:32:41.028 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:41.028 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:41.028 -07 000000409 INF: FPGA: Recv ZSGSRD 36705
17-03-17 17:32:41.038 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:41.038 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:41.038 -07 000000409 INF: FPGA: Recv ZSGSRD 36691
17-03-17 17:32:41.048 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:41.048 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:41.048 -07 000000409 INF: FPGA: Recv ZSGSRD 36702
17-03-17 17:32:41.058 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:41.058 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:41.058 -07 000000409 INF: FPGA: Recv ZSGSRD 36699
17-03-17 17:32:41.068 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:41.068 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:41.068 -07 000000608 INF: FPGA: Recv ZSGSRD 36698
17-03-17 17:32:41.078 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:41.078 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:41.078 -07 000000608 INF: FPGA: Recv ZSGSRD 36700
17-03-17 17:32:41.088 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:41.088 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:41.088 -07 000000608 INF: FPGA: Recv ZPIEZORD 32866
17-03-17 17:32:41.098 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:41.098 -07 000000478 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.870 V. Piezo Error = -8.5 V.
17-03-17 17:32:41.098 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36699 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36700 (-175.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36691 (-175.1 uncal um), Max = 36705 (-175.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:32:41.098 -07 000000478 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36699, posNoise = 6, negNoise = 8
17-03-17 17:32:41.098 -07 000000478 INF: Z Motor: After move to -0.176086, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:41.098 -07 000000478 INF: Z Motor: Settle wait time = 1437 ms, measure time = 109 ms (allowed 150 ms), total time = 1546 ms
17-03-17 17:32:41.098 -07 000000478 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:32:41.148 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 17:32:41.148 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:32:41.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:41.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:41.148 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:41.148 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:41.158 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:32:41.158 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:41.158 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:32:41.158 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:32:41.158 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:32:41.158 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:32:41.168 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:32:41.168 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:32:41.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:32:41.218 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:32:41.418 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:32:41.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:32:41.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:32:41.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:32:41.458 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:32:41.458 -07 000000409 INF: FPGA: Recv CAMSNAP
17-03-17 17:32:41.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 17:32:41.508 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:32:41.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 17:32:41.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:41.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:32:41.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 17:32:41.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:32:41.558 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:42.478 -07 000000627 INF: Autofocus start
17-03-17 17:32:42.478 -07 000000627 INF: MeasureProfile start
17-03-17 17:32:42.498 -07 000000627 INF: MeasureProfile done
17-03-17 17:32:42.498 -07 000000627 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 17:32:42.498 -07 000000627 INF: Autofocus finished
17-03-17 17:32:42.498 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:42.498 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 933 ms to get response, and 939 ms overall
17-03-17 17:32:42.498 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:32:42.698 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:32:42.698 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 17:32:42.708 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.17608551340162. ----------
17-03-17 17:32:42.708 -07 000000610 INF: Cycle	2	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:32:42.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36946, sync = True, waitForSettling = True)
17-03-17 17:32:42.708 -07 000000610 INF: Z Motor: Moving to -0.169128 mm, started at -0.176086 mm, distance = 6.96 um
17-03-17 17:32:42.708 -07 000000610 INF: FPGA: Xmit ZDACW 36946\n [Z Motor]
17-03-17 17:32:42.708 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 17:32:42.718 -07 000000610 INF: FPGA: 'ZDACW 36946' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:32:42.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:42.718 -07 000000409 INF: FPGA: Recv ZDACR 36946
17-03-17 17:32:42.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:42.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:32:42.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:42.878 -07 000000409 INF: FPGA: Recv ZSGSRD 35610
17-03-17 17:32:42.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:42.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:42.888 -07 000000409 INF: FPGA: Recv ZSGSRD 35610
17-03-17 17:32:42.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:42.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:42.898 -07 000000409 INF: FPGA: Recv ZSGSRD 35617
17-03-17 17:32:42.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:42.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:42.908 -07 000000409 INF: FPGA: Recv ZSGSRD 35627
17-03-17 17:32:42.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:42.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:42.918 -07 000000409 INF: FPGA: Recv ZSGSRD 35618
17-03-17 17:32:42.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:42.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:42.928 -07 000000409 INF: FPGA: Recv ZSGSRD 35621
17-03-17 17:32:42.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:42.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:42.938 -07 000000409 INF: FPGA: Recv ZSGSRD 35618
17-03-17 17:32:42.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:42.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:42.948 -07 000000409 INF: FPGA: Recv ZSGSRD 35611
17-03-17 17:32:42.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:42.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:42.958 -07 000000561 INF: FPGA: Recv ZSGSRD 35615
17-03-17 17:32:42.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:42.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:42.968 -07 000000409 INF: FPGA: Recv ZSGSRD 35614
17-03-17 17:32:42.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:42.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:42.978 -07 000000561 INF: FPGA: Recv ZPIEZORD 31405
17-03-17 17:32:42.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:42.988 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.638 V. Piezo Error = -9.3 V.
17-03-17 17:32:42.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35616 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35616 (-168.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35610 (-168.2 uncal um), Max = 35627 (-168.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:32:42.988 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35616, posNoise = 11, negNoise = 6
17-03-17 17:32:42.988 -07 000000610 INF: Z Motor: After move to -0.169128, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:42.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:32:42.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:42.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:42.988 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:42.988 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:42.988 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:32:42.988 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:32:42.988 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:42.988 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:32:42.988 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:32:42.988 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:32:42.988 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 17:32:42.988 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:32:42.998 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:32:42.998 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:32:42.998 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:32:42.998 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:32:42.998 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:32:42.998 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:32:43.008 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:32:43.008 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:32:43.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37122 150\n [Camera]
17-03-17 17:32:43.208 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:32:43.598 -07 000000631 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:32:43.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:32:43.598 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:43.598 -07 000000631 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:32:43.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:32:43.598 -07 000000442 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:43.598 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:43.598 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:32:43.608 -07 000000442 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:43.608 -07 000000442 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:32:43.788 -07 000000631 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37122 775
17-03-17 17:32:43.938 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 17:32:43.968 -07 000000442 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 367 ms.
17-03-17 17:32:43.968 -07 000000442 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-17 17:32:43.968 -07 000000442 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:43.978 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:32:43.978 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 17:32:43.978 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:43.978 -07 000000442 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:32:43.978 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:32:43.978 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:32:43.988 -07 000000442 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 17:32:44.128 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:32:44.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:32:44.128 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:44.128 -07 000000631 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:32:44.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:32:44.128 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:44.128 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:44.128 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:32:44.138 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:44.138 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:32:44.158 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.088793,
17-03-17 17:32:44.318 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:32:44.318 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:32:44.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37122 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-17 17:32:44.318 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:32:44.318 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.169128091652093. ------
17-03-17 17:32:44.318 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:44.318 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17553 mm
17-03-17 17:32:44.318 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:32:44.328 -07 000000631 INF: Z Motor: Entering MoveAbsStepped (DAC = 38345, sync = True, waitForSettling = False)
17-03-17 17:32:44.328 -07 000000631 INF: Z Motor: Moving to -0.175532 mm, started at -0.169128 mm, distance = -6.40 um
17-03-17 17:32:44.438 -07 000000442 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 17:32:44.438 -07 000000442 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 17:32:44.438 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:44.438 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 115 ms to get response, and 115 ms overall
17-03-17 17:32:44.438 -07 000000631 INF: FPGA: Xmit ZDACW 38345\n [Z Motor]
17-03-17 17:32:44.438 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:32:44.448 -07 000000631 INF: FPGA: 'ZDACW 38345' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:32:44.448 -07 000000631 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:44.448 -07 000000561 INF: FPGA: Recv ZDACR 38345
17-03-17 17:32:44.458 -07 000000631 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:44.458 -07 000000631 INF: Z Motor: MoveAbsStepped took 127 ms (did NOT wait for settling yet))
17-03-17 17:32:44.458 -07 000000409 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:32:44.468 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:44.528 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 17:32:44.528 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 17:32:44.528 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:44.528 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 17:32:44.528 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 17:32:44.528 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:44.528 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:32:44.538 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:32:44.538 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 17:32:44.538 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 17:32:45.138 -07 000000631 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:32:45.138 -07 000000631 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:32:45.138 -07 000000409 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 670 ms to get response, and 695 ms overall
17-03-17 17:32:45.138 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 660 ms to get response, and 696 ms overall
17-03-17 17:32:45.138 -07 000000442 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:45.138 -07 000000442 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:32:45.138 -07 000000442 INF: Y Motor: Moving 1340 steps-17
17-03-17 17:32:45.138 -07 000000442 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:32:45.518 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 17:32:45.518 -07 000000442 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 379 ms overall
17-03-17 17:32:45.548 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:45.548 -07 000000382 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:32:45.558 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:32:45.558 -07 000000442 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:45.558 -07 000000442 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:32:45.558 -07 000000442 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.838 mm, average velocity = 2.205 mm/sec
17-03-17 17:32:46.508 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:46.508 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:32:46.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:32:46.508 -07 000000382 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:32:46.518 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:46.518 -07 000000442 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:46.538 -07 000000442 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:32:46.538 -07 000000442 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:32:46.538 -07 000000442 INF: Y Motor: Moved to 66.5396 after 2096 ms (table move)
17-03-17 17:32:46.538 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175532 mm (DAC = 38345)
17-03-17 17:32:46.538 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:46.538 -07 000000475 INF: FPGA: Recv ZSGSRD 36615
17-03-17 17:32:46.548 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:32:46.548 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:46.548 -07 000000409 INF: FPGA: Recv ZSGSRD 36613
17-03-17 17:32:46.558 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:46.558 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:46.558 -07 000000382 INF: FPGA: Recv ZSGSRD 36607
17-03-17 17:32:46.568 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:46.568 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:46.568 -07 000000442 INF: FPGA: Recv ZSGSRD 36607
17-03-17 17:32:46.578 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:46.578 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:46.578 -07 000000438 INF: FPGA: Recv ZSGSRD 36610
17-03-17 17:32:46.588 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:46.588 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:46.588 -07 000000475 INF: FPGA: Recv ZSGSRD 36613
17-03-17 17:32:46.598 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:46.598 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:46.598 -07 000000442 INF: FPGA: Recv ZSGSRD 36623
17-03-17 17:32:46.608 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:46.608 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:46.608 -07 000000442 INF: FPGA: Recv ZSGSRD 36619
17-03-17 17:32:46.618 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:46.618 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:46.618 -07 000000631 INF: FPGA: Recv ZSGSRD 36618
17-03-17 17:32:46.628 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:46.628 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:46.628 -07 000000442 INF: FPGA: Recv ZSGSRD 36615
17-03-17 17:32:46.638 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:46.638 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:46.638 -07 000000442 INF: FPGA: Recv ZPIEZORD 32754
17-03-17 17:32:46.648 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:46.648 -07 000000462 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.851 V. Piezo Error = -8.5 V.
17-03-17 17:32:46.648 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36614 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36614 (-174.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36607 (-174.6 uncal um), Max = 36623 (-174.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:32:46.648 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36614, posNoise = 9, negNoise = 7
17-03-17 17:32:46.648 -07 000000462 INF: Z Motor: After move to -0.175532, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:46.648 -07 000000462 INF: Z Motor: Settle wait time = 2099 ms, measure time = 107 ms (allowed 150 ms), total time = 2206 ms
17-03-17 17:32:46.648 -07 000000462 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:32:46.698 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2370 ms
17-03-17 17:32:46.698 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:32:46.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:46.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:46.698 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:46.698 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:46.698 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:32:46.698 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:46.698 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:32:46.698 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:32:46.708 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:32:46.708 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:32:46.708 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:32:46.708 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 17:32:46.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:32:46.758 -07 000000631 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:32:46.958 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:32:46.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:32:46.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:32:46.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:32:46.998 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:32:46.998 -07 000000631 INF: FPGA: Recv CAMSNAP
17-03-17 17:32:46.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 17:32:47.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:32:47.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:47.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:32:47.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:32:47.098 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:47.098 -07 000000462 INF: Autofocus start
17-03-17 17:32:47.098 -07 000000462 INF: MeasureProfile start
17-03-17 17:32:47.098 -07 000000631 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:47.108 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:32:47.108 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:32:47.108 -07 000000462 INF: MeasureProfile done
17-03-17 17:32:47.108 -07 000000462 INF: X=32  Z correction [um]=0.09220707
17-03-17 17:32:47.108 -07 000000462 INF: Autofocus finished
17-03-17 17:32:47.308 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:32:47.308 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:32:47.308 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.175539455369571. ----------
17-03-17 17:32:47.308 -07 000000610 INF: Cycle	2	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:32:47.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36878, sync = True, waitForSettling = True)
17-03-17 17:32:47.318 -07 000000610 INF: Z Motor: Moving to -0.168817 mm, started at -0.175539 mm, distance = 6.72 um
17-03-17 17:32:47.318 -07 000000610 INF: FPGA: Xmit ZDACW 36878\n [Z Motor]
17-03-17 17:32:47.318 -07 000000631 INF: FPGA: Recv ZDACW
17-03-17 17:32:47.328 -07 000000610 INF: FPGA: 'ZDACW 36878' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:32:47.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:47.328 -07 000000462 INF: FPGA: Recv ZDACR 36878
17-03-17 17:32:47.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:47.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:32:47.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:47.488 -07 000000382 INF: FPGA: Recv ZSGSRD 35568
17-03-17 17:32:47.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:47.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:47.498 -07 000000631 INF: FPGA: Recv ZSGSRD 35568
17-03-17 17:32:47.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:47.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:47.508 -07 000000631 INF: FPGA: Recv ZSGSRD 35570
17-03-17 17:32:47.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:47.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:47.518 -07 000000631 INF: FPGA: Recv ZSGSRD 35565
17-03-17 17:32:47.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:47.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:47.528 -07 000000631 INF: FPGA: Recv ZSGSRD 35570
17-03-17 17:32:47.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:47.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:47.538 -07 000000382 INF: FPGA: Recv ZSGSRD 35566
17-03-17 17:32:47.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:47.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:47.548 -07 000000631 INF: FPGA: Recv ZSGSRD 35569
17-03-17 17:32:47.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:47.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:47.558 -07 000000442 INF: FPGA: Recv ZSGSRD 35573
17-03-17 17:32:47.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:47.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:47.568 -07 000000631 INF: FPGA: Recv ZSGSRD 35569
17-03-17 17:32:47.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:47.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:47.578 -07 000000382 INF: FPGA: Recv ZSGSRD 35567
17-03-17 17:32:47.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:47.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:47.588 -07 000000631 INF: FPGA: Recv ZPIEZORD 31361
17-03-17 17:32:47.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:47.598 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.627 V. Piezo Error = -9.3 V.
17-03-17 17:32:47.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35568 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35568 (-167.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35565 (-167.9 uncal um), Max = 35573 (-168.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:32:47.598 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35568, posNoise = 5, negNoise = 3
17-03-17 17:32:47.598 -07 000000610 INF: Z Motor: After move to -0.168817, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:47.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:32:47.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:47.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:47.598 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:47.598 -07 000000442 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:47.598 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:32:47.598 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:47.598 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:32:47.598 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:32:47.598 -07 000000631 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:32:47.598 -07 000000631 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:32:47.598 -07 000000631 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:32:47.598 -07 000000631 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:32:47.608 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:32:47.608 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:32:47.608 -07 000000631 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:32:47.608 -07 000000631 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:32:47.618 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 17:32:47.618 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:32:47.618 -07 000000631 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 17:32:47.618 -07 000000631 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 17:32:47.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37054 150\n [Camera]
17-03-17 17:32:47.818 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:32:48.208 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:32:48.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:32:48.208 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:48.218 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:32:48.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:32:48.218 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:48.218 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:48.218 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:32:48.218 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:48.218 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:32:48.408 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37054 775
17-03-17 17:32:48.558 -07 000000631 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:32:48.608 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 17:32:48.608 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 17:32:48.608 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:48.618 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:32:48.618 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 17:32:48.618 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 17:32:48.618 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 17:32:48.618 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:48.618 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:32:48.628 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 17:32:48.748 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:32:48.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:32:48.748 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:48.748 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:48.748 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) start.
17-03-17 17:32:48.748 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:32:48.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:32:48.748 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:48.748 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:48.748 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 17:32:48.938 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:32:48.938 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:32:48.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37054 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-17 17:32:48.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:32:48.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.168819729469289. ------
17-03-17 17:32:48.938 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:48.938 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17563 mm
17-03-17 17:32:48.938 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:32:48.948 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:48.948 -07 000000442 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 17:32:48.948 -07 000000442 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 17:32:48.948 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38367, sync = True, waitForSettling = False)
17-03-17 17:32:48.948 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:48.948 -07 000000486 INF: Z Motor: Moving to -0.175633 mm, started at -0.168820 mm, distance = -6.81 um
17-03-17 17:32:48.948 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:32:48.948 -07 000000618 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:32:48.958 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:32:48.958 -07 000000442 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:48.958 -07 000000442 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:32:48.958 -07 000000442 INF: Y Motor: Moving 1349 steps-27
17-03-17 17:32:48.958 -07 000000486 INF: FPGA: Xmit ZDACW 38367\n [Z Motor]
17-03-17 17:32:48.958 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:32:48.968 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:32:48.968 -07 000000486 INF: FPGA: 'ZDACW 38367' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 17:32:48.978 -07 000000442 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:32:48.988 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:48.988 -07 000000618 INF: FPGA: Recv ZDACR 38367
17-03-17 17:32:48.998 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:32:48.998 -07 000000486 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 17:32:49.148 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 17:32:49.148 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 17:32:49.148 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:49.148 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 17:32:49.148 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 17:32:49.148 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:49.148 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:32:49.158 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:32:49.158 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 17:32:49.158 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 17:32:49.168 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:32:49.168 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 17:32:49.348 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 17:32:49.348 -07 000000442 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:32:49.388 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:49.388 -07 000000478 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:32:49.398 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:32:49.398 -07 000000442 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:49.398 -07 000000442 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 17:32:49.398 -07 000000442 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.118 mm/sec
17-03-17 17:32:49.518 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.05755,
17-03-17 17:32:50.348 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:50.348 -07 000000478 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:32:50.358 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:50.358 -07 000000442 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:50.368 -07 000000442 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:32:50.368 -07 000000442 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:32:50.368 -07 000000442 INF: Y Motor: Moved to 67.3726 after 1427 ms (table move)
17-03-17 17:32:50.378 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175633 mm (DAC = 38367)
17-03-17 17:32:50.378 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:50.378 -07 000000459 INF: FPGA: Recv ZSGSRD 36624
17-03-17 17:32:50.388 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:32:50.388 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:50.388 -07 000000459 INF: FPGA: Recv ZSGSRD 36631
17-03-17 17:32:50.398 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:50.398 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:50.398 -07 000000631 INF: FPGA: Recv ZSGSRD 36630
17-03-17 17:32:50.408 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:50.408 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:50.408 -07 000000631 INF: FPGA: Recv ZSGSRD 36632
17-03-17 17:32:50.418 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:50.418 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:50.418 -07 000000631 INF: FPGA: Recv ZSGSRD 36635
17-03-17 17:32:50.428 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:50.428 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:50.428 -07 000000631 INF: FPGA: Recv ZSGSRD 36637
17-03-17 17:32:50.438 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:50.438 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:50.438 -07 000000551 INF: FPGA: Recv ZSGSRD 36632
17-03-17 17:32:50.448 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:50.448 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:50.448 -07 000000551 INF: FPGA: Recv ZSGSRD 36624
17-03-17 17:32:50.458 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:50.458 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:50.458 -07 000000551 INF: FPGA: Recv ZSGSRD 36618
17-03-17 17:32:50.468 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:50.468 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:50.468 -07 000000551 INF: FPGA: Recv ZSGSRD 36629
17-03-17 17:32:50.478 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:50.478 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:50.478 -07 000000631 INF: FPGA: Recv ZPIEZORD 32803
17-03-17 17:32:50.488 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:50.488 -07 000000382 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.854 V. Piezo Error = -8.5 V.
17-03-17 17:32:50.488 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36629 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36630 (-174.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36618 (-174.7 uncal um), Max = 36637 (-174.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 17:32:50.488 -07 000000382 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36629, posNoise = 8, negNoise = 11
17-03-17 17:32:50.488 -07 000000382 INF: Z Motor: After move to -0.175633, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:50.488 -07 000000382 INF: Z Motor: Settle wait time = 1430 ms, measure time = 108 ms (allowed 150 ms), total time = 1538 ms
17-03-17 17:32:50.488 -07 000000382 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:32:50.538 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 17:32:50.538 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:32:50.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:50.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:50.538 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:50.538 -07 000000631 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:50.538 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:32:50.538 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:50.548 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:32:50.548 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:32:50.548 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:32:50.548 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:32:50.558 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:32:50.558 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 17:32:50.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:32:50.598 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:32:50.798 -07 000000631 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:32:50.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:32:50.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:32:50.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172802376, 0x0, 559484976) start.
17-03-17 17:32:50.838 -07 000000631 INF: FPGA: Recv @CAMSNAP 282
17-03-17 17:32:50.838 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 17:32:50.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 286 ms overall
17-03-17 17:32:50.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172802376, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:32:50.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:50.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:32:50.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:32:50.938 -07 000000631 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:50.938 -07 000000382 INF: Autofocus start
17-03-17 17:32:50.938 -07 000000382 INF: MeasureProfile start
17-03-17 17:32:50.938 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:50.948 -07 000000631 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:32:50.948 -07 000000631 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:32:50.958 -07 000000382 INF: MeasureProfile done
17-03-17 17:32:50.958 -07 000000382 INF: X=0  Z correction [um]=-0.0713522
17-03-17 17:32:50.958 -07 000000382 INF: Autofocus finished
17-03-17 17:32:51.148 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:32:51.148 -07 000000631 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:32:51.148 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.175635818551697. ----------
17-03-17 17:32:51.148 -07 000000610 INF: Cycle	2	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:32:51.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36864, sync = True, waitForSettling = True)
17-03-17 17:32:51.158 -07 000000610 INF: Z Motor: Moving to -0.168753 mm, started at -0.175636 mm, distance = 6.88 um
17-03-17 17:32:51.158 -07 000000610 INF: FPGA: Xmit ZDACW 36864\n [Z Motor]
17-03-17 17:32:51.158 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:32:51.168 -07 000000610 INF: FPGA: 'ZDACW 36864' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:32:51.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:51.168 -07 000000382 INF: FPGA: Recv ZDACR 36864
17-03-17 17:32:51.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:51.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:32:51.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:51.328 -07 000000382 INF: FPGA: Recv ZSGSRD 35563
17-03-17 17:32:51.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:51.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:51.338 -07 000000551 INF: FPGA: Recv ZSGSRD 35567
17-03-17 17:32:51.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:51.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:51.348 -07 000000551 INF: FPGA: Recv ZSGSRD 35560
17-03-17 17:32:51.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:51.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:51.358 -07 000000382 INF: FPGA: Recv ZSGSRD 35555
17-03-17 17:32:51.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:51.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:51.368 -07 000000631 INF: FPGA: Recv ZSGSRD 35562
17-03-17 17:32:51.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:51.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:51.378 -07 000000623 INF: FPGA: Recv ZSGSRD 35565
17-03-17 17:32:51.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:51.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:51.388 -07 000000551 INF: FPGA: Recv ZSGSRD 35555
17-03-17 17:32:51.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:51.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:51.398 -07 000000631 INF: FPGA: Recv ZSGSRD 35559
17-03-17 17:32:51.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:51.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:51.408 -07 000000382 INF: FPGA: Recv ZSGSRD 35562
17-03-17 17:32:51.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:51.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:51.418 -07 000000551 INF: FPGA: Recv ZSGSRD 35564
17-03-17 17:32:51.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:51.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:51.428 -07 000000631 INF: FPGA: Recv ZPIEZORD 31350
17-03-17 17:32:51.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:51.438 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.625 V. Piezo Error = -9.3 V.
17-03-17 17:32:51.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35561 (-167.9 uncal um), Error = 0.8 uncal um, Median = 35562 (-167.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35555 (-167.9 uncal um), Max = 35567 (-167.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:32:51.438 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35561, posNoise = 6, negNoise = 6
17-03-17 17:32:51.438 -07 000000610 INF: Z Motor: After move to -0.168753, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:51.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:32:51.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:51.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:51.438 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:51.438 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:32:51.438 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:51.438 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:32:51.438 -07 000000631 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:51.438 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:32:51.438 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:32:51.438 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:32:51.438 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:32:51.438 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:32:51.448 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:32:51.448 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:32:51.448 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:32:51.448 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:32:51.458 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:32:51.458 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:32:51.458 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:32:51.458 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 17:32:51.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37041 150\n [Camera]
17-03-17 17:32:51.508 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:32:51.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:32:51.658 -07 000000631 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:32:52.048 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:32:52.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:32:52.048 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:52.048 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:52.048 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2244017992, 0x0, 391868352) start.
17-03-17 17:32:52.048 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:32:52.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:32:52.048 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:52.048 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:52.048 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:32:52.248 -07 000000631 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37041 777
17-03-17 17:32:52.388 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:32:52.428 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2244017992, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:32:52.428 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:32:52.428 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:52.428 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:32:52.428 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:32:52.428 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:52.428 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:32:52.428 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:32:52.438 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:32:52.448 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:32:52.588 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-17 17:32:52.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-17 17:32:52.588 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:52.588 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:52.588 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 17:32:52.588 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 17:32:52.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 17:32:52.588 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:52.588 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:52.588 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 17:32:52.768 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:32:52.768 -07 000000631 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:32:52.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37041 150' command took 2 ms to send, 1309 ms to get response, and 1312 ms overall
17-03-17 17:32:52.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:32:52.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.168774759984296. ------
17-03-17 17:32:52.778 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:52.778 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17482 mm
17-03-17 17:32:52.778 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:32:52.778 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 17:32:52.778 -07 000000476 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 17:32:52.908 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:52.908 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:52.908 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 131 ms overall
17-03-17 17:32:52.908 -07 000000631 INF: Z Motor: Entering MoveAbsStepped (DAC = 38190, sync = True, waitForSettling = False)
17-03-17 17:32:52.908 -07 000000631 INF: Z Motor: Moving to -0.174823 mm, started at -0.168775 mm, distance = -6.05 um
17-03-17 17:32:52.908 -07 000000551 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:32:52.918 -07 000000631 INF: FPGA: Xmit ZDACW 38190\n [Z Motor]
17-03-17 17:32:52.918 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 132 ms overall
17-03-17 17:32:52.918 -07 000000476 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:52.918 -07 000000476 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:32:52.918 -07 000000476 INF: Y Motor: Moving 1344 steps-21
17-03-17 17:32:52.918 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:32:52.928 -07 000000631 INF: FPGA: 'ZDACW 38190' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:32:52.928 -07 000000409 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:32:52.938 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:32:52.948 -07 000000631 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:52.948 -07 000000438 INF: FPGA: Recv ZDACR 38190
17-03-17 17:32:52.958 -07 000000631 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:32:52.958 -07 000000631 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 17:32:52.988 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 17:32:52.988 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 17:32:52.988 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:52.988 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 17:32:52.988 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 17:32:52.988 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:52.998 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:32:52.998 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:32:52.998 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 17:32:53.008 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 17:32:53.128 -07 000000631 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:32:53.128 -07 000000409 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall
17-03-17 17:32:53.308 -07 000000442 INF: FPGA: Recv YMVTILE
17-03-17 17:32:53.308 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:32:53.348 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:53.348 -07 000000486 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:32:53.358 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:53.358 -07 000000476 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:53.358 -07 000000476 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 17:32:53.358 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-17 17:32:54.308 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:54.308 -07 000000631 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:32:54.318 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:54.318 -07 000000476 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:54.328 -07 000000476 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:32:54.328 -07 000000476 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:32:54.328 -07 000000476 INF: Y Motor: Moved to 68.2056 after 1550 ms (table move)
17-03-17 17:32:54.338 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174823 mm (DAC = 38190)
17-03-17 17:32:54.338 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:54.338 -07 000000438 INF: FPGA: Recv ZSGSRD 36499
17-03-17 17:32:54.348 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:32:54.348 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:54.348 -07 000000476 INF: FPGA: Recv ZSGSRD 36503
17-03-17 17:32:54.358 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:54.358 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:54.358 -07 000000442 INF: FPGA: Recv ZSGSRD 36503
17-03-17 17:32:54.368 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:54.368 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:54.368 -07 000000561 INF: FPGA: Recv ZSGSRD 36508
17-03-17 17:32:54.378 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:54.378 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:54.378 -07 000000626 INF: FPGA: Recv ZSGSRD 36508
17-03-17 17:32:54.388 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:54.388 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:54.388 -07 000000618 INF: FPGA: Recv ZSGSRD 36513
17-03-17 17:32:54.398 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:32:54.398 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:54.398 -07 000000561 INF: FPGA: Recv ZSGSRD 36513
17-03-17 17:32:54.408 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:54.408 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:54.408 -07 000000409 INF: FPGA: Recv ZSGSRD 36499
17-03-17 17:32:54.418 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:54.418 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:54.418 -07 000000486 INF: FPGA: Recv ZSGSRD 36490
17-03-17 17:32:54.428 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:54.438 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:54.438 -07 000000623 INF: FPGA: Recv ZSGSRD 36510
17-03-17 17:32:54.448 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:32:54.448 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:54.448 -07 000000476 INF: FPGA: Recv ZPIEZORD 32648
17-03-17 17:32:54.458 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:54.458 -07 000000382 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.827 V. Piezo Error = -8.5 V.
17-03-17 17:32:54.458 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36505 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36506 (-174.0 uncal um), StdDev = 7 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 36490 (-173.9 uncal um), Max = 36513 (-174.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 15 (0.1 uncal um)
17-03-17 17:32:54.458 -07 000000382 INF: Z Motor: ADC noise = 15, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36505, posNoise = 8, negNoise = 15
17-03-17 17:32:54.458 -07 000000382 INF: Z Motor: After move to -0.174823, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:54.458 -07 000000382 INF: Z Motor: Settle wait time = 1425 ms, measure time = 119 ms (allowed 150 ms), total time = 1544 ms
17-03-17 17:32:54.458 -07 000000382 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-17 17:32:54.498 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1714 ms
17-03-17 17:32:54.498 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:32:54.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:54.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:54.498 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:54.498 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:54.498 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:32:54.498 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:54.508 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:32:54.508 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:32:54.508 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:32:54.508 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:32:54.518 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:32:54.518 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:32:54.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:32:54.568 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:32:54.758 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:32:54.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:32:54.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:32:54.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:32:54.798 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:32:54.798 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:32:54.798 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:32:54.878 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.05619,
17-03-17 17:32:54.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:32:54.878 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:54.878 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:32:54.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:32:54.898 -07 000000382 INF: Autofocus start
17-03-17 17:32:54.898 -07 000000382 INF: MeasureProfile start
17-03-17 17:32:54.908 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:54.908 -07 000000382 INF: MeasureProfile done
17-03-17 17:32:54.908 -07 000000382 INF: X=0  Z correction [um]=-0.0713522
17-03-17 17:32:54.908 -07 000000382 INF: Autofocus finished
17-03-17 17:32:54.918 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:54.918 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:32:54.928 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:32:55.128 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:32:55.128 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 17:32:55.128 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.174839216246119. ----------
17-03-17 17:32:55.128 -07 000000610 INF: Cycle	2	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:32:55.138 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36686, sync = True, waitForSettling = True)
17-03-17 17:32:55.138 -07 000000610 INF: Z Motor: Moving to -0.167938 mm, started at -0.174839 mm, distance = 6.90 um
17-03-17 17:32:55.138 -07 000000610 INF: FPGA: Xmit ZDACW 36686\n [Z Motor]
17-03-17 17:32:55.138 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:32:55.148 -07 000000610 INF: FPGA: 'ZDACW 36686' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:32:55.148 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:55.148 -07 000000623 INF: FPGA: Recv ZDACR 36686
17-03-17 17:32:55.158 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:55.158 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:32:55.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:55.308 -07 000000623 INF: FPGA: Recv ZSGSRD 35430
17-03-17 17:32:55.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:32:55.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:55.318 -07 000000623 INF: FPGA: Recv ZSGSRD 35436
17-03-17 17:32:55.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:55.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:55.328 -07 000000623 INF: FPGA: Recv ZSGSRD 35437
17-03-17 17:32:55.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:55.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:55.338 -07 000000478 INF: FPGA: Recv ZSGSRD 35428
17-03-17 17:32:55.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:55.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:55.348 -07 000000382 INF: FPGA: Recv ZSGSRD 35440
17-03-17 17:32:55.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:55.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:55.358 -07 000000462 INF: FPGA: Recv ZSGSRD 35431
17-03-17 17:32:55.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:55.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:55.368 -07 000000382 INF: FPGA: Recv ZSGSRD 35433
17-03-17 17:32:55.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:55.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:55.378 -07 000000478 INF: FPGA: Recv ZSGSRD 35429
17-03-17 17:32:55.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:55.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:55.388 -07 000000382 INF: FPGA: Recv ZSGSRD 35427
17-03-17 17:32:55.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:55.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:55.398 -07 000000478 INF: FPGA: Recv ZSGSRD 35435
17-03-17 17:32:55.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:55.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:55.408 -07 000000382 INF: FPGA: Recv ZPIEZORD 31200
17-03-17 17:32:55.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:55.418 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.598 V. Piezo Error = -9.3 V.
17-03-17 17:32:55.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35433 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35432 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35427 (-167.0 uncal um), Max = 35440 (-167.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:32:55.418 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35433, posNoise = 7, negNoise = 6
17-03-17 17:32:55.418 -07 000000610 INF: Z Motor: After move to -0.167938, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:55.418 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:32:55.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:55.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:55.418 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:55.418 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:55.418 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:32:55.418 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:55.418 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:32:55.418 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:32:55.418 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:32:55.418 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:32:55.418 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:32:55.418 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:32:55.428 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:32:55.428 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:32:55.428 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:32:55.428 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:32:55.438 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:32:55.438 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:32:55.438 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:32:55.438 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:32:55.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36863 150\n [Camera]
17-03-17 17:32:55.638 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:32:56.028 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:32:56.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:32:56.028 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:56.028 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:32:56.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:32:56.028 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:56.038 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:56.038 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:32:56.038 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:56.038 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:32:56.218 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36863 775
17-03-17 17:32:56.368 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:32:56.408 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:32:56.408 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:32:56.408 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:56.408 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:32:56.408 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:32:56.408 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:56.408 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:32:56.408 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:32:56.408 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:32:56.418 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:32:56.508 -07 000000631 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:32:56.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:32:56.558 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:32:56.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:32:56.558 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:32:56.558 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:32:56.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:32:56.558 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:32:56.558 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:32:56.558 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:32:56.568 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:32:56.568 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:32:56.748 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:32:56.748 -07 000000631 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:32:56.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36863 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-17 17:32:56.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:32:56.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.167952460830151. ------
17-03-17 17:32:56.758 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:56.758 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17443 mm
17-03-17 17:32:56.758 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:32:56.758 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 17:32:56.758 -07 000000438 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 17:32:56.758 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:56.758 -07 000000631 INF: Z Motor: Entering MoveAbsStepped (DAC = 38104, sync = True, waitForSettling = False)
17-03-17 17:32:56.758 -07 000000631 INF: Z Motor: Moving to -0.174429 mm, started at -0.167952 mm, distance = -6.48 um
17-03-17 17:32:56.868 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:56.868 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-17 17:32:56.878 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:32:56.878 -07 000000382 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:32:56.878 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-17 17:32:56.878 -07 000000438 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:56.878 -07 000000438 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:32:56.878 -07 000000438 INF: Y Motor: Moving 1339 steps-14
17-03-17 17:32:56.888 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:32:56.898 -07 000000631 INF: FPGA: Xmit ZDACW 38104\n [Z Motor]
17-03-17 17:32:56.898 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:32:56.908 -07 000000631 INF: FPGA: 'ZDACW 38104' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 17:32:56.908 -07 000000631 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:56.908 -07 000000382 INF: FPGA: Recv ZDACR 38104
17-03-17 17:32:56.918 -07 000000631 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:56.918 -07 000000631 INF: Z Motor: MoveAbsStepped took 152 ms (did NOT wait for settling yet))
17-03-17 17:32:56.938 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:32:56.938 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:32:56.948 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:56.948 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:32:56.948 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:32:56.948 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:32:56.948 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:56.958 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:32:56.958 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:32:56.958 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:32:57.078 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:32:57.078 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 204 ms overall
17-03-17 17:32:57.258 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 17:32:57.258 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 17:32:57.298 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:57.298 -07 000000382 INF: FPGA: Recv YRDPOS 141368
17-03-17 17:32:57.308 -07 000000438 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:57.308 -07 000000438 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:57.308 -07 000000438 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 17:32:57.308 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.837 mm, average velocity = 2.157 mm/sec
17-03-17 17:32:58.258 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:32:58.258 -07 000000618 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:32:58.268 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:58.268 -07 000000438 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:32:58.278 -07 000000438 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:32:58.278 -07 000000438 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:32:58.278 -07 000000438 INF: Y Motor: Moved to 69.0278 after 1523 ms (table move)
17-03-17 17:32:58.288 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174429 mm (DAC = 38104)
17-03-17 17:32:58.288 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:58.288 -07 000000438 INF: FPGA: Recv ZSGSRD 36443
17-03-17 17:32:58.298 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:32:58.298 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:58.298 -07 000000442 INF: FPGA: Recv ZSGSRD 36444
17-03-17 17:32:58.308 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:58.308 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:58.308 -07 000000442 INF: FPGA: Recv ZSGSRD 36447
17-03-17 17:32:58.318 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:58.318 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:58.318 -07 000000442 INF: FPGA: Recv ZSGSRD 36443
17-03-17 17:32:58.328 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:58.328 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:58.328 -07 000000442 INF: FPGA: Recv ZSGSRD 36441
17-03-17 17:32:58.338 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:58.338 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:58.338 -07 000000382 INF: FPGA: Recv ZSGSRD 36446
17-03-17 17:32:58.348 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:32:58.348 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:58.348 -07 000000442 INF: FPGA: Recv ZSGSRD 36441
17-03-17 17:32:58.358 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:58.358 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:58.358 -07 000000442 INF: FPGA: Recv ZSGSRD 36439
17-03-17 17:32:58.368 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:58.368 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:58.368 -07 000000442 INF: FPGA: Recv ZSGSRD 36436
17-03-17 17:32:58.378 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:58.378 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:32:58.378 -07 000000442 INF: FPGA: Recv ZSGSRD 36433
17-03-17 17:32:58.388 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:58.388 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:32:59.298 -07 000000478 INF: FPGA: Recv ZPIEZORD 32525
17-03-17 17:32:59.298 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 900 ms to get response, and 910 ms overall
17-03-17 17:32:59.298 -07 000000608 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.814 V. Piezo Error = -8.7 V.
17-03-17 17:32:59.298 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36441 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36442 (-173.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36433 (-173.5 uncal um), Max = 36447 (-173.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:32:59.298 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36441, posNoise = 6, negNoise = 8
17-03-17 17:32:59.298 -07 000000608 INF: Z Motor: After move to -0.174429, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:32:59.298 -07 000000608 INF: Z Motor: Settle wait time = 1524 ms, measure time = 1009 ms (allowed 150 ms), total time = 2533 ms
17-03-17 17:32:59.298 -07 000000608 INF: Z Motor: Warning: Actual position measuring time = 1009 ms, longer than max expected time of 150 ms
17-03-17 17:32:59.298 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2538 ms
17-03-17 17:32:59.298 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:32:59.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:32:59.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:32:59.298 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:32:59.308 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:32:59.308 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:32:59.308 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:32:59.308 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:32:59.308 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:32:59.308 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:32:59.308 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:32:59.318 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:32:59.318 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 17:32:59.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:32:59.368 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:32:59.568 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:32:59.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:32:59.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:32:59.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:32:59.608 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:32:59.608 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 17:32:59.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 17:32:59.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:32:59.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:32:59.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:32:59.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:32:59.708 -07 000000627 INF: Autofocus start
17-03-17 17:32:59.708 -07 000000627 INF: MeasureProfile start
17-03-17 17:32:59.708 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:32:59.708 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:32:59.718 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:32:59.718 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:32:59.728 -07 000000627 INF: MeasureProfile done
17-03-17 17:32:59.728 -07 000000627 INF: X=32  Z correction [um]=0.09220707
17-03-17 17:32:59.728 -07 000000627 INF: Autofocus finished
17-03-17 17:32:59.918 -07 000000442 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:32:59.918 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:32:59.918 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.174428066669046. ----------
17-03-17 17:32:59.918 -07 000000610 INF: Cycle	2	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:32:59.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36637, sync = True, waitForSettling = True)
17-03-17 17:32:59.928 -07 000000610 INF: Z Motor: Moving to -0.167713 mm, started at -0.174428 mm, distance = 6.71 um
17-03-17 17:32:59.938 -07 000000610 INF: FPGA: Xmit ZDACW 36637\n [Z Motor]
17-03-17 17:32:59.938 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:32:59.948 -07 000000610 INF: FPGA: 'ZDACW 36637' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 17:32:59.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:32:59.948 -07 000000442 INF: FPGA: Recv ZDACR 36637
17-03-17 17:32:59.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:32:59.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:33:00.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:00.108 -07 000000623 INF: FPGA: Recv ZSGSRD 35398
17-03-17 17:33:00.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:00.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:00.118 -07 000000438 INF: FPGA: Recv ZSGSRD 35396
17-03-17 17:33:00.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:00.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:00.128 -07 000000478 INF: FPGA: Recv ZSGSRD 35392
17-03-17 17:33:00.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:00.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:00.138 -07 000000442 INF: FPGA: Recv ZSGSRD 35396
17-03-17 17:33:00.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:00.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:00.148 -07 000000478 INF: FPGA: Recv ZSGSRD 35397
17-03-17 17:33:00.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:00.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:00.158 -07 000000442 INF: FPGA: Recv ZSGSRD 35399
17-03-17 17:33:00.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:00.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:00.168 -07 000000442 INF: FPGA: Recv ZSGSRD 35407
17-03-17 17:33:00.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:00.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:00.178 -07 000000478 INF: FPGA: Recv ZSGSRD 35397
17-03-17 17:33:00.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:00.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:00.188 -07 000000442 INF: FPGA: Recv ZSGSRD 35396
17-03-17 17:33:00.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:00.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:00.198 -07 000000478 INF: FPGA: Recv ZSGSRD 35400
17-03-17 17:33:00.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:00.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:00.208 -07 000000442 INF: FPGA: Recv ZPIEZORD 31147
17-03-17 17:33:00.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:00.218 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.590 V. Piezo Error = -9.4 V.
17-03-17 17:33:00.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35398 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35397 (-166.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35392 (-166.8 uncal um), Max = 35407 (-166.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:33:00.218 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35398, posNoise = 9, negNoise = 6
17-03-17 17:33:00.218 -07 000000610 INF: Z Motor: After move to -0.167713, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:00.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 17:33:00.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:00.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:00.218 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:00.218 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:33:00.218 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:00.218 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:33:00.218 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:33:00.218 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:00.218 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:33:00.218 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:33:00.218 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:33:00.218 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:33:00.228 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:33:00.228 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:33:00.228 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:33:00.228 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:33:00.238 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:33:00.238 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:33:00.238 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:33:00.238 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:33:00.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36814 150\n [Camera]
17-03-17 17:33:00.248 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.073868,
17-03-17 17:33:00.448 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 17:33:00.838 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:33:00.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:33:00.838 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:00.838 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:33:00.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:33:00.838 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:00.838 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:00.838 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:33:00.838 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:00.848 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:33:01.028 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36814 775
17-03-17 17:33:01.178 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:33:01.228 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 17:33:01.228 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:33:01.228 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:01.228 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 17:33:01.228 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 17:33:01.228 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:01.228 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:33:01.228 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 17:33:01.228 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:33:01.238 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 17:33:01.368 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:33:01.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:33:01.368 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:01.368 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:01.368 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) start.
17-03-17 17:33:01.368 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:33:01.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:33:01.368 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:01.368 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:01.368 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 17:33:01.508 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:33:01.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:33:01.558 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:33:01.558 -07 000000442 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:33:01.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36814 150' command took 3 ms to send, 1303 ms to get response, and 1318 ms overall
17-03-17 17:33:01.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:33:01.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.167727613405189. ------
17-03-17 17:33:01.558 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:01.558 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17412 mm
17-03-17 17:33:01.558 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:33:01.568 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:01.568 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:33:01.568 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:33:01.568 -07 000000442 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 17:33:01.568 -07 000000442 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 17:33:01.568 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38036, sync = True, waitForSettling = False)
17-03-17 17:33:01.568 -07 000000475 INF: Z Motor: Moving to -0.174118 mm, started at -0.167728 mm, distance = -6.39 um
17-03-17 17:33:01.578 -07 000000475 INF: FPGA: Xmit ZDACW 38036\n [Z Motor]
17-03-17 17:33:01.578 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:33:01.588 -07 000000475 INF: FPGA: 'ZDACW 38036' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:33:01.588 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:01.588 -07 000000459 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:33:01.598 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:33:01.598 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:01.598 -07 000000442 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:01.598 -07 000000442 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:33:01.598 -07 000000442 INF: Y Motor: Moving 1352 steps-31
17-03-17 17:33:01.598 -07 000000462 INF: FPGA: Recv ZDACR 38036
17-03-17 17:33:01.608 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:33:01.608 -07 000000475 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 17:33:01.608 -07 000000442 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:33:01.758 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 17:33:01.758 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:33:01.758 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:01.758 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 17:33:01.758 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 17:33:01.758 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:01.758 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:01.768 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:33:01.768 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 17:33:01.768 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:33:01.768 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:33:01.768 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 17:33:01.988 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 17:33:01.988 -07 000000442 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 17:33:02.018 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:02.018 -07 000000462 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:33:02.028 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:02.028 -07 000000442 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:02.028 -07 000000442 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 17:33:02.028 -07 000000442 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.845 mm, average velocity = 2.172 mm/sec
17-03-17 17:33:02.978 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:02.978 -07 000000623 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:33:02.988 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:02.988 -07 000000442 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:02.998 -07 000000442 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:33:02.998 -07 000000442 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:33:02.998 -07 000000442 INF: Y Motor: Moved to 69.8638 after 1434 ms (table move)
17-03-17 17:33:03.008 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174118 mm (DAC = 38036)
17-03-17 17:33:03.008 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:03.008 -07 000000382 INF: FPGA: Recv ZSGSRD 36391
17-03-17 17:33:03.018 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:33:03.018 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:03.018 -07 000000551 INF: FPGA: Recv ZSGSRD 36386
17-03-17 17:33:03.028 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:03.028 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:03.028 -07 000000618 INF: FPGA: Recv ZSGSRD 36392
17-03-17 17:33:03.038 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:03.038 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:03.038 -07 000000623 INF: FPGA: Recv ZSGSRD 36398
17-03-17 17:33:03.048 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:03.048 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:03.048 -07 000000478 INF: FPGA: Recv ZSGSRD 36398
17-03-17 17:33:03.058 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:03.058 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:03.058 -07 000000561 INF: FPGA: Recv ZSGSRD 36395
17-03-17 17:33:03.068 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:03.068 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:03.068 -07 000000623 INF: FPGA: Recv ZSGSRD 36391
17-03-17 17:33:03.078 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:03.078 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:03.078 -07 000000478 INF: FPGA: Recv ZSGSRD 36388
17-03-17 17:33:03.088 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:03.088 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:03.088 -07 000000382 INF: FPGA: Recv ZSGSRD 36387
17-03-17 17:33:03.098 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:03.098 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:03.098 -07 000000478 INF: FPGA: Recv ZSGSRD 36385
17-03-17 17:33:03.108 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:03.108 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:03.108 -07 000000382 INF: FPGA: Recv ZPIEZORD 32511
17-03-17 17:33:03.118 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:03.118 -07 000000608 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.804 V. Piezo Error = -8.6 V.
17-03-17 17:33:03.118 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36391 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36391 (-173.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36385 (-173.2 uncal um), Max = 36398 (-173.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:33:03.118 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36391, posNoise = 7, negNoise = 6
17-03-17 17:33:03.118 -07 000000608 INF: Z Motor: After move to -0.174118, error = 0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:03.118 -07 000000608 INF: Z Motor: Settle wait time = 1439 ms, measure time = 106 ms (allowed 150 ms), total time = 1545 ms
17-03-17 17:33:03.118 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:33:03.168 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 17:33:03.168 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:33:03.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:03.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:03.168 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:03.168 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:03.168 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:33:03.168 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:03.178 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:03.178 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:33:03.178 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:33:03.178 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:33:03.178 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:33:03.178 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:33:03.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:33:03.228 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:33:03.428 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:33:03.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:33:03.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:33:03.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172802376, 0x0, 559484976) start.
17-03-17 17:33:03.468 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:33:03.468 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 17:33:03.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 17:33:03.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172802376, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:33:03.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:03.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:33:03.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:33:03.568 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:03.568 -07 000000459 INF: Autofocus start
17-03-17 17:33:03.568 -07 000000459 INF: MeasureProfile start
17-03-17 17:33:03.568 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:03.578 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:33:03.578 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:33:03.578 -07 000000459 INF: MeasureProfile done
17-03-17 17:33:03.578 -07 000000459 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 17:33:03.578 -07 000000459 INF: Autofocus finished
17-03-17 17:33:03.778 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:33:03.778 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:33:03.778 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.174106856061958. ----------
17-03-17 17:33:03.778 -07 000000610 INF: Cycle	2	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:33:03.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36516, sync = True, waitForSettling = True)
17-03-17 17:33:03.788 -07 000000610 INF: Z Motor: Moving to -0.167160 mm, started at -0.174107 mm, distance = 6.95 um
17-03-17 17:33:03.788 -07 000000610 INF: FPGA: Xmit ZDACW 36516\n [Z Motor]
17-03-17 17:33:03.788 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:33:03.798 -07 000000610 INF: FPGA: 'ZDACW 36516' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:33:03.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:03.798 -07 000000618 INF: FPGA: Recv ZDACR 36516
17-03-17 17:33:03.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:03.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:33:03.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:03.958 -07 000000442 INF: FPGA: Recv ZSGSRD 35307
17-03-17 17:33:03.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:03.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:03.968 -07 000000462 INF: FPGA: Recv ZSGSRD 35314
17-03-17 17:33:03.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:03.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:03.978 -07 000000627 INF: FPGA: Recv ZSGSRD 35313
17-03-17 17:33:03.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:03.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:03.988 -07 000000561 INF: FPGA: Recv ZSGSRD 35309
17-03-17 17:33:03.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:03.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:03.998 -07 000000442 INF: FPGA: Recv ZSGSRD 35307
17-03-17 17:33:04.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:04.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:04.008 -07 000000478 INF: FPGA: Recv ZSGSRD 35314
17-03-17 17:33:04.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:04.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:04.018 -07 000000627 INF: FPGA: Recv ZSGSRD 35312
17-03-17 17:33:04.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:04.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:04.028 -07 000000618 INF: FPGA: Recv ZSGSRD 35313
17-03-17 17:33:04.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:04.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:04.038 -07 000000442 INF: FPGA: Recv ZSGSRD 35308
17-03-17 17:33:04.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:04.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:04.048 -07 000000478 INF: FPGA: Recv ZSGSRD 35316
17-03-17 17:33:04.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:04.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:04.058 -07 000000627 INF: FPGA: Recv ZPIEZORD 31014
17-03-17 17:33:04.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:04.068 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.572 V. Piezo Error = -9.5 V.
17-03-17 17:33:04.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35311 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35312 (-166.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35307 (-166.3 uncal um), Max = 35316 (-166.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:33:04.068 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35311, posNoise = 5, negNoise = 4
17-03-17 17:33:04.068 -07 000000610 INF: Z Motor: After move to -0.167160, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:04.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:33:04.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:04.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:04.068 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:04.068 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:04.068 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:33:04.068 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:04.068 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:33:04.068 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:33:04.068 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:04.068 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:33:04.068 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:33:04.068 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:33:04.078 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:33:04.078 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:33:04.078 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:33:04.078 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:33:04.088 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:33:04.088 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:33:04.088 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:33:04.088 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:33:04.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36693 150\n [Camera]
17-03-17 17:33:04.288 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:33:04.678 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:33:04.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:33:04.678 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:04.678 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:04.678 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-17 17:33:04.678 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:33:04.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:33:04.678 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:04.678 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:04.678 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:33:04.868 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36693 775
17-03-17 17:33:05.018 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:33:05.078 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 17:33:05.078 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 17:33:05.078 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:05.078 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 17:33:05.078 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:33:05.078 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:05.088 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:33:05.088 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 17:33:05.088 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:33:05.088 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 17:33:05.208 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:33:05.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:33:05.208 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:05.208 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:05.208 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:33:05.208 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:33:05.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:33:05.218 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:05.218 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:05.218 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 17:33:05.398 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:33:05.398 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:33:05.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36693 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 17:33:05.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:33:05.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.167168706948856. ------
17-03-17 17:33:05.408 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:05.408 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17365 mm
17-03-17 17:33:05.408 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:33:05.528 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:05.528 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-17 17:33:05.528 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:33:05.528 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 17:33:05.528 -07 000000618 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 17:33:05.528 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 37934, sync = True, waitForSettling = False)
17-03-17 17:33:05.528 -07 000000608 INF: Z Motor: Moving to -0.173651 mm, started at -0.167169 mm, distance = -6.48 um
17-03-17 17:33:05.538 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:05.538 -07 000000462 INF: FPGA: Recv YRDPOS 143082
17-03-17 17:33:05.548 -07 000000608 INF: FPGA: Xmit ZDACW 37934\n [Z Motor]
17-03-17 17:33:05.548 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:33:05.548 -07 000000618 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:05.548 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:33:05.548 -07 000000618 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:33:05.548 -07 000000618 INF: Y Motor: Moving 1341 steps-18
17-03-17 17:33:05.558 -07 000000608 INF: FPGA: 'ZDACW 37934' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 17:33:05.558 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:05.558 -07 000000551 INF: FPGA: Recv ZDACR 37934
17-03-17 17:33:05.568 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:05.568 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:33:05.568 -07 000000608 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 17:33:05.618 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.06299,
17-03-17 17:33:05.618 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 17:33:05.618 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 17:33:05.618 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:05.618 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 17:33:05.618 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 17:33:05.618 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:05.618 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:05.618 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:33:05.618 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 17:33:05.628 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 17:33:05.728 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:33:05.728 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-17 17:33:05.948 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 17:33:05.948 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-17 17:33:05.978 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:05.978 -07 000000623 INF: FPGA: Recv YRDPOS 144770
17-03-17 17:33:05.988 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:33:05.988 -07 000000618 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:05.988 -07 000000618 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 17:33:05.988 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.108 mm/sec
17-03-17 17:33:06.508 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:33:06.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:33:06.938 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:06.938 -07 000000551 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:33:06.948 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:06.948 -07 000000618 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:06.958 -07 000000618 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:33:06.958 -07 000000618 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:33:06.958 -07 000000618 INF: Y Motor: Moved to 70.6890 after 1432 ms (table move)
17-03-17 17:33:06.968 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173651 mm (DAC = 37934)
17-03-17 17:33:06.968 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:06.968 -07 000000459 INF: FPGA: Recv ZSGSRD 36325
17-03-17 17:33:06.978 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:06.978 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:06.978 -07 000000551 INF: FPGA: Recv ZSGSRD 36315
17-03-17 17:33:06.988 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:06.988 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:06.988 -07 000000478 INF: FPGA: Recv ZSGSRD 36323
17-03-17 17:33:06.998 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:06.998 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:06.998 -07 000000551 INF: FPGA: Recv ZSGSRD 36325
17-03-17 17:33:07.008 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:07.008 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:07.008 -07 000000459 INF: FPGA: Recv ZSGSRD 36325
17-03-17 17:33:07.018 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:07.018 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:07.018 -07 000000438 INF: FPGA: Recv ZSGSRD 36327
17-03-17 17:33:07.028 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:07.028 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:07.028 -07 000000462 INF: FPGA: Recv ZSGSRD 36319
17-03-17 17:33:07.038 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:07.038 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:07.038 -07 000000438 INF: FPGA: Recv ZSGSRD 36319
17-03-17 17:33:07.048 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:07.048 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:07.048 -07 000000623 INF: FPGA: Recv ZSGSRD 36321
17-03-17 17:33:07.058 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:07.058 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:07.058 -07 000000438 INF: FPGA: Recv ZSGSRD 36320
17-03-17 17:33:07.068 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:07.068 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:07.068 -07 000000462 INF: FPGA: Recv ZPIEZORD 32391
17-03-17 17:33:07.078 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:07.078 -07 000000627 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.788 V. Piezo Error = -8.7 V.
17-03-17 17:33:07.078 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36322 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36322 (-172.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36315 (-172.7 uncal um), Max = 36327 (-172.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:33:07.078 -07 000000627 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36322, posNoise = 5, negNoise = 7
17-03-17 17:33:07.078 -07 000000627 INF: Z Motor: After move to -0.173651, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:07.078 -07 000000627 INF: Z Motor: Settle wait time = 1437 ms, measure time = 106 ms (allowed 150 ms), total time = 1543 ms
17-03-17 17:33:07.078 -07 000000627 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:33:07.128 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1716 ms
17-03-17 17:33:07.128 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:33:07.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:07.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:07.128 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:07.128 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:07.128 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:33:07.128 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:07.128 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:33:07.128 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:33:07.138 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:33:07.138 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:33:07.148 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:33:07.148 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:33:07.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:33:07.188 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:33:07.388 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:33:07.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:33:07.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:33:07.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:33:07.428 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:33:07.428 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 17:33:07.428 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:33:07.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:33:07.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:07.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:33:07.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:33:07.528 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:07.528 -07 000000478 INF: Autofocus start
17-03-17 17:33:07.528 -07 000000478 INF: MeasureProfile start
17-03-17 17:33:07.528 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:07.538 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:33:07.538 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:33:07.538 -07 000000478 INF: MeasureProfile done
17-03-17 17:33:07.538 -07 000000478 INF: X=0  Z correction [um]=-0.0713522
17-03-17 17:33:07.538 -07 000000478 INF: Autofocus finished
17-03-17 17:33:07.738 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:33:07.738 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:33:07.738 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.173663585424176. ----------
17-03-17 17:33:07.738 -07 000000610 INF: Cycle	2	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:33:07.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36431, sync = True, waitForSettling = True)
17-03-17 17:33:07.748 -07 000000610 INF: Z Motor: Moving to -0.166770 mm, started at -0.173664 mm, distance = 6.89 um
17-03-17 17:33:07.748 -07 000000610 INF: FPGA: Xmit ZDACW 36431\n [Z Motor]
17-03-17 17:33:07.748 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:33:07.758 -07 000000610 INF: FPGA: 'ZDACW 36431' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:33:07.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:07.758 -07 000000618 INF: FPGA: Recv ZDACR 36431
17-03-17 17:33:07.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:07.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:33:07.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:07.918 -07 000000551 INF: FPGA: Recv ZSGSRD 35249
17-03-17 17:33:07.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:07.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:07.928 -07 000000478 INF: FPGA: Recv ZSGSRD 35252
17-03-17 17:33:07.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:07.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:07.938 -07 000000551 INF: FPGA: Recv ZSGSRD 35249
17-03-17 17:33:07.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:07.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:07.948 -07 000000551 INF: FPGA: Recv ZSGSRD 35248
17-03-17 17:33:07.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:07.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:07.958 -07 000000551 INF: FPGA: Recv ZSGSRD 35259
17-03-17 17:33:07.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:07.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:07.968 -07 000000551 INF: FPGA: Recv ZSGSRD 35257
17-03-17 17:33:07.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:07.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:07.978 -07 000000608 INF: FPGA: Recv ZSGSRD 35253
17-03-17 17:33:07.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:07.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:07.988 -07 000000608 INF: FPGA: Recv ZSGSRD 35254
17-03-17 17:33:07.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:07.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:07.998 -07 000000551 INF: FPGA: Recv ZSGSRD 35246
17-03-17 17:33:08.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:08.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:08.008 -07 000000618 INF: FPGA: Recv ZSGSRD 35262
17-03-17 17:33:08.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:08.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:08.018 -07 000000551 INF: FPGA: Recv ZPIEZORD 30978
17-03-17 17:33:08.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:08.028 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.559 V. Piezo Error = -9.4 V.
17-03-17 17:33:08.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35253 (-165.9 uncal um), Error = 0.8 uncal um, Median = 35252 (-165.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35246 (-165.9 uncal um), Max = 35262 (-166.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:33:08.028 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35253, posNoise = 9, negNoise = 7
17-03-17 17:33:08.028 -07 000000610 INF: Z Motor: After move to -0.166770, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:08.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:33:08.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:08.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:08.028 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:08.028 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:33:08.028 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:33:08.028 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:08.028 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:33:08.028 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:08.028 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:33:08.028 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:33:08.028 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:08.028 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:33:08.038 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:33:08.038 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:33:08.038 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:33:08.038 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:33:08.048 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:33:08.048 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:33:08.048 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:33:08.048 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:33:08.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36607 150\n [Camera]
17-03-17 17:33:08.248 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 17:33:08.638 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:33:08.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:33:08.638 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:08.638 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:33:08.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:33:08.638 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:08.638 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:08.638 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:33:08.648 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:08.648 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:33:08.828 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36607 775
17-03-17 17:33:08.978 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:33:09.018 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:33:09.018 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:33:09.018 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:09.018 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:33:09.018 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:33:09.018 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:09.018 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:09.018 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:33:09.018 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:09.028 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:33:09.168 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:33:09.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:33:09.168 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:09.168 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:33:09.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:33:09.168 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:09.168 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:09.168 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:33:09.178 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:09.178 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:33:09.358 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:33:09.358 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:33:09.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36607 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:33:09.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:33:09.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.166796102644634. ------
17-03-17 17:33:09.368 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17343 mm
17-03-17 17:33:09.368 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:33:09.368 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:09.478 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:09.478 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-17 17:33:09.478 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:33:09.488 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37885, sync = True, waitForSettling = False)
17-03-17 17:33:09.488 -07 000000462 INF: Z Motor: Moving to -0.173426 mm, started at -0.166796 mm, distance = -6.63 um
17-03-17 17:33:09.488 -07 000000462 INF: FPGA: Xmit ZDACW 37885\n [Z Motor]
17-03-17 17:33:09.488 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 17:33:09.488 -07 000000627 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 17:33:09.488 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 17:33:09.498 -07 000000462 INF: FPGA: 'ZDACW 37885' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:09.498 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:09.498 -07 000000551 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:33:09.508 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:33:09.508 -07 000000627 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:09.508 -07 000000627 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:33:09.508 -07 000000627 INF: Y Motor: Moving 1350 steps-29
17-03-17 17:33:09.508 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:09.508 -07 000000475 INF: FPGA: Recv ZDACR 37885
17-03-17 17:33:09.518 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:33:09.518 -07 000000462 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 17:33:09.518 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:33:09.558 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 17:33:09.558 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 17:33:09.558 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:09.558 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:33:09.558 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 17:33:09.558 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:09.558 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:09.558 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:33:09.558 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 17:33:09.568 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:33:09.688 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:33:09.688 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 204 ms to get response, and 204 ms overall
17-03-17 17:33:09.888 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 17:33:09.888 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 17:33:09.918 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:09.928 -07 000000459 INF: FPGA: Recv YRDPOS 146472
17-03-17 17:33:09.928 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:33:09.928 -07 000000627 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:09.928 -07 000000627 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:33:09.928 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-17 17:33:10.878 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:10.878 -07 000000486 INF: FPGA: Recv YRDPOS 146472
17-03-17 17:33:10.888 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:10.888 -07 000000627 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:10.898 -07 000000627 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:33:10.898 -07 000000627 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:33:10.898 -07 000000627 INF: Y Motor: Moved to 71.5195 after 1418 ms (table move)
17-03-17 17:33:10.908 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173426 mm (DAC = 37885)
17-03-17 17:33:10.908 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:10.908 -07 000000631 INF: FPGA: Recv ZSGSRD 36280
17-03-17 17:33:10.918 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:10.918 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:10.918 -07 000000409 INF: FPGA: Recv ZSGSRD 36281
17-03-17 17:33:10.928 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:10.928 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:10.928 -07 000000623 INF: FPGA: Recv ZSGSRD 36279
17-03-17 17:33:10.938 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:10.938 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:10.938 -07 000000631 INF: FPGA: Recv ZSGSRD 36277
17-03-17 17:33:10.948 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:10.948 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:10.948 -07 000000623 INF: FPGA: Recv ZSGSRD 36274
17-03-17 17:33:10.958 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:10.958 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:10.958 -07 000000409 INF: FPGA: Recv ZSGSRD 36296
17-03-17 17:33:10.968 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:10.978 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:10.978 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.05891,
17-03-17 17:33:10.978 -07 000000462 INF: FPGA: Recv ZSGSRD 36291
17-03-17 17:33:10.988 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:33:10.988 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:10.988 -07 000000631 INF: FPGA: Recv ZSGSRD 36277
17-03-17 17:33:10.998 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:11.008 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:11.008 -07 000000459 INF: FPGA: Recv ZSGSRD 36283
17-03-17 17:33:11.018 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:33:11.018 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:11.018 -07 000000627 INF: FPGA: Recv ZSGSRD 36283
17-03-17 17:33:11.028 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:11.048 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:11.048 -07 000000462 INF: FPGA: Recv ZPIEZORD 32345
17-03-17 17:33:11.058 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:33:11.058 -07 000000618 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.781 V. Piezo Error = -8.7 V.
17-03-17 17:33:11.058 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36282 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36280 (-172.5 uncal um), StdDev = 7 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 36274 (-172.5 uncal um), Max = 36296 (-172.6 uncal um), Pos Noise = 14 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:33:11.058 -07 000000618 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36282, posNoise = 14, negNoise = 8
17-03-17 17:33:11.058 -07 000000618 INF: Z Motor: After move to -0.173426, error = 0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:11.058 -07 000000618 INF: Z Motor: Settle wait time = 1423 ms, measure time = 147 ms (allowed 150 ms), total time = 1570 ms
17-03-17 17:33:11.058 -07 000000618 INF: Z Motor: Waiting extra 3 ms after reading position to reach expected total of 150 ms
17-03-17 17:33:11.068 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1699 ms
17-03-17 17:33:11.068 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:33:11.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:11.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:11.068 -07 000000631 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:11.068 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:33:11.068 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:11.068 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:11.068 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:11.068 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:33:11.078 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:33:11.078 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:33:11.078 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:33:11.078 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:33:11.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:33:11.128 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:33:11.328 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:33:11.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:33:11.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:33:11.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:33:11.368 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:33:11.368 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:33:11.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:33:11.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:33:11.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:11.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:33:11.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 17:33:11.468 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:11.468 -07 000000475 INF: Autofocus start
17-03-17 17:33:11.468 -07 000000475 INF: MeasureProfile start
17-03-17 17:33:11.468 -07 000000631 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:11.478 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:11.478 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:33:11.478 -07 000000475 INF: MeasureProfile done
17-03-17 17:33:11.478 -07 000000475 INF: X=32  Z correction [um]=0.09220707
17-03-17 17:33:11.478 -07 000000475 INF: Autofocus finished
17-03-17 17:33:11.508 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:33:11.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:33:11.678 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:33:11.678 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:33:11.678 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.173406616938506. ----------
17-03-17 17:33:11.688 -07 000000610 INF: Cycle	2	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:33:11.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36418, sync = True, waitForSettling = True)
17-03-17 17:33:11.688 -07 000000610 INF: Z Motor: Moving to -0.166711 mm, started at -0.173407 mm, distance = 6.70 um
17-03-17 17:33:11.688 -07 000000610 INF: FPGA: Xmit ZDACW 36418\n [Z Motor]
17-03-17 17:33:11.688 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 17:33:11.698 -07 000000610 INF: FPGA: 'ZDACW 36418' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:33:11.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:11.698 -07 000000551 INF: FPGA: Recv ZDACR 36418
17-03-17 17:33:11.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:11.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:33:11.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:11.858 -07 000000627 INF: FPGA: Recv ZSGSRD 35241
17-03-17 17:33:11.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:11.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:11.868 -07 000000486 INF: FPGA: Recv ZSGSRD 35244
17-03-17 17:33:11.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:11.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:11.878 -07 000000627 INF: FPGA: Recv ZSGSRD 35237
17-03-17 17:33:11.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:11.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:11.888 -07 000000486 INF: FPGA: Recv ZSGSRD 35239
17-03-17 17:33:11.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:11.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:11.898 -07 000000627 INF: FPGA: Recv ZSGSRD 35241
17-03-17 17:33:11.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:11.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:11.908 -07 000000623 INF: FPGA: Recv ZSGSRD 35241
17-03-17 17:33:11.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:11.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:11.918 -07 000000608 INF: FPGA: Recv ZSGSRD 35248
17-03-17 17:33:11.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:11.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:11.928 -07 000000475 INF: FPGA: Recv ZSGSRD 35244
17-03-17 17:33:11.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:11.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:11.938 -07 000000462 INF: FPGA: Recv ZSGSRD 35238
17-03-17 17:33:11.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:11.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:11.948 -07 000000608 INF: FPGA: Recv ZSGSRD 35238
17-03-17 17:33:11.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:11.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:11.958 -07 000000486 INF: FPGA: Recv ZPIEZORD 30977
17-03-17 17:33:11.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:11.968 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -9.4 V.
17-03-17 17:33:11.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35241 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35241 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35237 (-165.8 uncal um), Max = 35248 (-165.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:33:11.968 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35241, posNoise = 7, negNoise = 4
17-03-17 17:33:11.968 -07 000000610 INF: Z Motor: After move to -0.166711, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:11.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:33:11.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:11.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:11.968 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:11.968 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:33:11.968 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:33:11.968 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:11.968 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:33:11.968 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:33:11.968 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:33:11.968 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:11.968 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:11.968 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:33:11.978 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:33:11.978 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:33:11.978 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:33:11.978 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:33:11.978 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:33:11.978 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:33:11.988 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:33:11.988 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:33:11.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36595 150\n [Camera]
17-03-17 17:33:12.188 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 17:33:12.578 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:33:12.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:33:12.578 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:12.578 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:33:12.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:33:12.578 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:12.578 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:12.578 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:33:12.588 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:12.588 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:33:12.768 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36595 775
17-03-17 17:33:12.918 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:33:12.958 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:33:12.958 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:33:12.958 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:12.958 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:33:12.958 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 17:33:12.958 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:12.958 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:33:12.958 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:33:12.958 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:33:12.968 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:33:13.108 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:33:13.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:33:13.108 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:13.108 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:13.108 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) start.
17-03-17 17:33:13.108 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:33:13.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:33:13.108 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:13.108 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:13.108 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 17:33:13.298 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:33:13.298 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:33:13.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36595 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-17 17:33:13.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:33:13.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.166719012098933. ------
17-03-17 17:33:13.308 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17286 mm
17-03-17 17:33:13.308 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:33:13.308 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:13.308 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 17:33:13.308 -07 000000608 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 17:33:13.308 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 37762, sync = True, waitForSettling = False)
17-03-17 17:33:13.308 -07 000000475 INF: Z Motor: Moving to -0.172863 mm, started at -0.166719 mm, distance = -6.14 um
17-03-17 17:33:13.308 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:13.318 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:13.318 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:13.318 -07 000000486 INF: FPGA: Recv YRDPOS 146472
17-03-17 17:33:13.328 -07 000000475 INF: FPGA: Xmit ZDACW 37762\n [Z Motor]
17-03-17 17:33:13.328 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:33:13.328 -07 000000608 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:13.328 -07 000000608 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:33:13.328 -07 000000608 INF: Y Motor: Moving 1349 steps-27
17-03-17 17:33:13.328 -07 000000442 INF: FPGA: Recv ZDACW
17-03-17 17:33:13.338 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:33:13.338 -07 000000475 INF: FPGA: 'ZDACW 37762' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:33:13.348 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:33:13.358 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:13.358 -07 000000382 INF: FPGA: Recv ZDACR 37762
17-03-17 17:33:13.368 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:33:13.368 -07 000000475 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 17:33:13.498 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 17:33:13.498 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 17:33:13.498 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:13.508 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 17:33:13.508 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:33:13.508 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:13.508 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:13.508 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:33:13.508 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 17:33:13.518 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 17:33:13.538 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:33:13.538 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:33:13.718 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 17:33:13.718 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 17:33:13.748 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:13.758 -07 000000486 INF: FPGA: Recv YRDPOS 148172
17-03-17 17:33:13.758 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:33:13.758 -07 000000608 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:13.758 -07 000000608 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:33:13.758 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.843 mm, average velocity = 2.113 mm/sec
17-03-17 17:33:14.708 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:14.708 -07 000000626 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:33:14.718 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:14.718 -07 000000608 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:14.728 -07 000000608 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:33:14.728 -07 000000608 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:33:14.738 -07 000000608 INF: Y Motor: Moved to 72.3501 after 1424 ms (table move)
17-03-17 17:33:14.738 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172863 mm (DAC = 37762)
17-03-17 17:33:14.738 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:14.738 -07 000000608 INF: FPGA: Recv ZSGSRD 36199
17-03-17 17:33:14.748 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:14.748 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:14.748 -07 000000626 INF: FPGA: Recv ZSGSRD 36199
17-03-17 17:33:14.758 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:14.758 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:14.758 -07 000000442 INF: FPGA: Recv ZSGSRD 36203
17-03-17 17:33:14.768 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:14.768 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:14.768 -07 000000561 INF: FPGA: Recv ZSGSRD 36198
17-03-17 17:33:14.778 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:14.778 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:14.778 -07 000000442 INF: FPGA: Recv ZSGSRD 36193
17-03-17 17:33:14.788 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:14.788 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:14.788 -07 000000475 INF: FPGA: Recv ZSGSRD 36195
17-03-17 17:33:14.798 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:14.798 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:14.798 -07 000000475 INF: FPGA: Recv ZSGSRD 36206
17-03-17 17:33:14.808 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:14.808 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:14.808 -07 000000627 INF: FPGA: Recv ZSGSRD 36199
17-03-17 17:33:14.818 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:14.818 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:14.818 -07 000000475 INF: FPGA: Recv ZSGSRD 36193
17-03-17 17:33:14.828 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:14.828 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:14.828 -07 000000475 INF: FPGA: Recv ZSGSRD 36202
17-03-17 17:33:14.838 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:14.838 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:14.838 -07 000000627 INF: FPGA: Recv ZPIEZORD 32251
17-03-17 17:33:14.848 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:14.848 -07 000000623 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.762 V. Piezo Error = -8.7 V.
17-03-17 17:33:14.848 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36199 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36199 (-172.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36193 (-172.0 uncal um), Max = 36206 (-172.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:33:14.848 -07 000000623 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36199, posNoise = 7, negNoise = 6
17-03-17 17:33:14.848 -07 000000623 INF: Z Motor: After move to -0.172863, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:14.848 -07 000000623 INF: Z Motor: Settle wait time = 1427 ms, measure time = 107 ms (allowed 150 ms), total time = 1534 ms
17-03-17 17:33:14.848 -07 000000623 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:33:14.898 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 17:33:14.898 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:33:14.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:14.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:14.898 -07 000000442 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:14.898 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:14.898 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:33:14.898 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:14.898 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:33:14.898 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:33:14.908 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:33:14.908 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:33:14.908 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:33:14.908 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:33:14.918 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:33:14.958 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:33:15.158 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:33:15.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:33:15.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:33:15.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172802376, 0x0, 559484976) start.
17-03-17 17:33:15.198 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:33:15.198 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 17:33:15.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:33:15.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172802376, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:33:15.278 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:15.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:33:15.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:33:15.298 -07 000000442 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:15.298 -07 000000486 INF: Autofocus start
17-03-17 17:33:15.298 -07 000000486 INF: MeasureProfile start
17-03-17 17:33:15.298 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:15.308 -07 000000442 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:15.308 -07 000000442 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:33:15.308 -07 000000486 INF: MeasureProfile done
17-03-17 17:33:15.308 -07 000000486 INF: X=-32  Z correction [um]=-0.2344
17-03-17 17:33:15.308 -07 000000486 INF: Autofocus finished
17-03-17 17:33:15.508 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:33:15.508 -07 000000442 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:33:15.508 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.17287340733074. ----------
17-03-17 17:33:15.508 -07 000000610 INF: Cycle	2	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:33:15.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36223, sync = True, waitForSettling = True)
17-03-17 17:33:15.518 -07 000000610 INF: Z Motor: Moving to -0.165818 mm, started at -0.172873 mm, distance = 7.06 um
17-03-17 17:33:15.518 -07 000000610 INF: FPGA: Xmit ZDACW 36223\n [Z Motor]
17-03-17 17:33:15.518 -07 000000442 INF: FPGA: Recv ZDACW
17-03-17 17:33:15.528 -07 000000610 INF: FPGA: 'ZDACW 36223' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:33:15.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:15.528 -07 000000486 INF: FPGA: Recv ZDACR 36223
17-03-17 17:33:15.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:15.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:33:15.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:15.688 -07 000000608 INF: FPGA: Recv ZSGSRD 35104
17-03-17 17:33:15.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:15.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:15.698 -07 000000608 INF: FPGA: Recv ZSGSRD 35105
17-03-17 17:33:15.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:15.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:15.708 -07 000000608 INF: FPGA: Recv ZSGSRD 35103
17-03-17 17:33:15.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:15.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:15.718 -07 000000608 INF: FPGA: Recv ZSGSRD 35099
17-03-17 17:33:15.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:15.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:15.728 -07 000000608 INF: FPGA: Recv ZSGSRD 35103
17-03-17 17:33:15.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:15.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:15.738 -07 000000608 INF: FPGA: Recv ZSGSRD 35096
17-03-17 17:33:15.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:15.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:15.748 -07 000000608 INF: FPGA: Recv ZSGSRD 35101
17-03-17 17:33:15.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:15.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:15.758 -07 000000608 INF: FPGA: Recv ZSGSRD 35101
17-03-17 17:33:15.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:15.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:15.768 -07 000000608 INF: FPGA: Recv ZSGSRD 35101
17-03-17 17:33:15.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:15.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:15.778 -07 000000608 INF: FPGA: Recv ZSGSRD 35105
17-03-17 17:33:15.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:15.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:15.788 -07 000000608 INF: FPGA: Recv ZPIEZORD 30780
17-03-17 17:33:15.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:15.798 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.527 V. Piezo Error = -9.5 V.
17-03-17 17:33:15.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35102 (-165.0 uncal um), Error = 0.9 uncal um, Median = 35102 (-165.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35096 (-164.9 uncal um), Max = 35105 (-165.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:33:15.798 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35102, posNoise = 3, negNoise = 6
17-03-17 17:33:15.798 -07 000000610 INF: Z Motor: After move to -0.165818, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:15.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:33:15.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:15.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:15.798 -07 000000442 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:15.798 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:15.798 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:33:15.798 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:15.798 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:33:15.798 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:33:15.798 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:15.798 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:33:15.798 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:33:15.798 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:33:15.808 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:33:15.808 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:33:15.808 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:33:15.808 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:33:15.818 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 17:33:15.818 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:33:15.818 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 17:33:15.818 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:33:15.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36400 150\n [Camera]
17-03-17 17:33:16.028 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:33:16.388 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.041198,
17-03-17 17:33:16.408 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:33:16.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:33:16.418 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:16.418 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:16.418 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2244017992, 0x0, 391868352) start.
17-03-17 17:33:16.418 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:33:16.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:33:16.418 -07 000000442 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:16.418 -07 000000442 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:16.418 -07 000000442 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:33:16.508 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:33:16.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:33:16.608 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36400 775
17-03-17 17:33:16.758 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:33:16.788 -07 000000442 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:33:16.788 -07 000000442 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 17:33:16.788 -07 000000442 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:16.788 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2244017992, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:33:16.788 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:33:16.788 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:16.798 -07 000000442 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:33:16.798 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:33:16.798 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:33:16.798 -07 000000442 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 17:33:16.948 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:33:16.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:33:16.948 -07 000000442 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:16.948 -07 000000442 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:16.948 -07 000000442 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 17:33:16.948 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:33:16.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:33:16.948 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:16.948 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:16.948 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 17:33:17.138 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:33:17.138 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:33:17.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36400 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-17 17:33:17.138 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:33:17.138 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.165826046611228. ------
17-03-17 17:33:17.268 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:17.268 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17248 mm
17-03-17 17:33:17.268 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:33:17.268 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 17:33:17.268 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37678, sync = True, waitForSettling = False)
17-03-17 17:33:17.268 -07 000000382 INF: Z Motor: Moving to -0.172479 mm, started at -0.165826 mm, distance = -6.65 um
17-03-17 17:33:17.268 -07 000000551 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 17:33:17.278 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:17.288 -07 000000382 INF: FPGA: Xmit ZDACW 37678\n [Z Motor]
17-03-17 17:33:17.338 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 17:33:17.338 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:33:17.338 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:17.348 -07 000000442 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 17:33:17.348 -07 000000442 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 17:33:17.348 -07 000000442 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:17.348 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:17.348 -07 000000442 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:33:17.348 -07 000000442 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 17:33:17.348 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 17:33:17.378 -07 000000442 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:17.378 -07 000000442 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:33:17.378 -07 000000442 INF: FPGA: Recv ZDACW
17-03-17 17:33:17.378 -07 000000382 INF: FPGA: 'ZDACW 37678' command took 0 ms to send, 86 ms to get response, and 112 ms overall
17-03-17 17:33:17.378 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:17.378 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 106 ms to get response, and 115 ms overall
17-03-17 17:33:17.378 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 96 ms to get response, and 111 ms overall
17-03-17 17:33:17.378 -07 000000551 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:17.378 -07 000000551 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:33:17.378 -07 000000551 INF: Y Motor: Moving 1348 steps-27
17-03-17 17:33:17.378 -07 000000442 INF: FPGA: Recv ZDACR 37678
17-03-17 17:33:17.388 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:33:17.388 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:33:17.388 -07 000000382 INF: Z Motor: MoveAbsStepped took 118 ms (did NOT wait for settling yet))
17-03-17 17:33:17.398 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:33:17.588 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:33:17.588 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 207 ms overall
17-03-17 17:33:17.768 -07 000000442 INF: FPGA: Recv YMVTILE
17-03-17 17:33:17.768 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 17:33:17.798 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:17.808 -07 000000623 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:33:17.808 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:33:17.808 -07 000000551 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:17.808 -07 000000551 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 17:33:17.808 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.843 mm, average velocity = 2.160 mm/sec
17-03-17 17:33:18.758 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:18.758 -07 000000561 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:33:18.768 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:18.768 -07 000000551 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:18.778 -07 000000551 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:33:18.778 -07 000000551 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:33:18.778 -07 000000551 INF: Y Motor: Moved to 73.1763 after 1515 ms (table move)
17-03-17 17:33:18.788 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172479 mm (DAC = 37678)
17-03-17 17:33:18.788 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:18.788 -07 000000561 INF: FPGA: Recv ZSGSRD 36138
17-03-17 17:33:18.798 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:18.798 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:18.798 -07 000000442 INF: FPGA: Recv ZSGSRD 36136
17-03-17 17:33:18.808 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:18.808 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:18.808 -07 000000561 INF: FPGA: Recv ZSGSRD 36133
17-03-17 17:33:18.818 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:18.818 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:18.818 -07 000000623 INF: FPGA: Recv ZSGSRD 36132
17-03-17 17:33:18.828 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:18.828 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:18.828 -07 000000551 INF: FPGA: Recv ZSGSRD 36130
17-03-17 17:33:18.838 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:18.838 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:18.838 -07 000000623 INF: FPGA: Recv ZSGSRD 36144
17-03-17 17:33:18.848 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:18.848 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:18.848 -07 000000382 INF: FPGA: Recv ZSGSRD 36130
17-03-17 17:33:18.858 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:18.858 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:18.858 -07 000000561 INF: FPGA: Recv ZSGSRD 36139
17-03-17 17:33:18.868 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:18.868 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:18.868 -07 000000382 INF: FPGA: Recv ZSGSRD 36141
17-03-17 17:33:18.878 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:18.878 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:18.878 -07 000000442 INF: FPGA: Recv ZSGSRD 36136
17-03-17 17:33:18.888 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:18.888 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:18.888 -07 000000382 INF: FPGA: Recv ZPIEZORD 32140
17-03-17 17:33:18.898 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:18.898 -07 000000627 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.749 V. Piezo Error = -8.8 V.
17-03-17 17:33:18.898 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36136 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36136 (-171.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36130 (-171.5 uncal um), Max = 36144 (-171.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:33:18.898 -07 000000627 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36136, posNoise = 8, negNoise = 6
17-03-17 17:33:18.898 -07 000000627 INF: Z Motor: After move to -0.172479, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:18.898 -07 000000627 INF: Z Motor: Settle wait time = 1518 ms, measure time = 108 ms (allowed 150 ms), total time = 1626 ms
17-03-17 17:33:18.898 -07 000000627 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:33:18.948 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1679 ms
17-03-17 17:33:18.948 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:33:18.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:18.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:18.948 -07 000000442 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:18.948 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:33:18.948 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:18.948 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:18.948 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:18.948 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:33:18.958 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 17:33:18.958 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:33:18.968 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:33:18.968 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:33:18.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:33:19.018 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:33:19.218 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:33:19.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:33:19.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:33:19.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:33:19.258 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:33:19.258 -07 000000442 INF: FPGA: Recv CAMSNAP
17-03-17 17:33:19.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 17:33:19.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:33:19.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:19.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:33:19.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:33:19.358 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:19.358 -07 000000627 INF: Autofocus start
17-03-17 17:33:19.358 -07 000000627 INF: MeasureProfile start
17-03-17 17:33:19.358 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:19.368 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:19.368 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:33:19.378 -07 000000627 INF: MeasureProfile done
17-03-17 17:33:19.378 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:33:19.378 -07 000000627 INF: Autofocus finished
17-03-17 17:33:19.568 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:33:19.568 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:33:19.568 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.172468681965809. ----------
17-03-17 17:33:19.568 -07 000000610 INF: Cycle	2	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:33:19.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36193, sync = True, waitForSettling = True)
17-03-17 17:33:19.578 -07 000000610 INF: Z Motor: Moving to -0.165681 mm, started at -0.172469 mm, distance = 6.79 um
17-03-17 17:33:19.578 -07 000000610 INF: FPGA: Xmit ZDACW 36193\n [Z Motor]
17-03-17 17:33:19.578 -07 000000442 INF: FPGA: Recv ZDACW
17-03-17 17:33:19.588 -07 000000610 INF: FPGA: 'ZDACW 36193' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:19.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:19.588 -07 000000561 INF: FPGA: Recv ZDACR 36193
17-03-17 17:33:19.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:19.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:33:19.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:19.748 -07 000000442 INF: FPGA: Recv ZSGSRD 35075
17-03-17 17:33:19.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:19.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:19.758 -07 000000561 INF: FPGA: Recv ZSGSRD 35079
17-03-17 17:33:19.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:19.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:19.768 -07 000000627 INF: FPGA: Recv ZSGSRD 35084
17-03-17 17:33:19.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:19.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:19.778 -07 000000438 INF: FPGA: Recv ZSGSRD 35077
17-03-17 17:33:19.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:19.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:19.788 -07 000000627 INF: FPGA: Recv ZSGSRD 35074
17-03-17 17:33:19.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:19.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:19.798 -07 000000438 INF: FPGA: Recv ZSGSRD 35077
17-03-17 17:33:19.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:19.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:19.808 -07 000000627 INF: FPGA: Recv ZSGSRD 35085
17-03-17 17:33:19.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:19.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:19.818 -07 000000561 INF: FPGA: Recv ZSGSRD 35084
17-03-17 17:33:19.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:19.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:19.828 -07 000000627 INF: FPGA: Recv ZSGSRD 35077
17-03-17 17:33:19.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:19.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:19.838 -07 000000382 INF: FPGA: Recv ZSGSRD 35084
17-03-17 17:33:19.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:19.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:19.848 -07 000000442 INF: FPGA: Recv ZPIEZORD 30792
17-03-17 17:33:19.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:19.858 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.523 V. Piezo Error = -9.4 V.
17-03-17 17:33:19.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35080 (-164.8 uncal um), Error = 0.9 uncal um, Median = 35078 (-164.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35074 (-164.8 uncal um), Max = 35085 (-164.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:33:19.858 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35080, posNoise = 5, negNoise = 6
17-03-17 17:33:19.858 -07 000000610 INF: Z Motor: After move to -0.165681, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:19.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:33:19.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:19.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:19.858 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:19.858 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:19.858 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:33:19.858 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:19.858 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:33:19.858 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:33:19.858 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:19.858 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:33:19.858 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:33:19.858 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:33:19.868 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:33:19.868 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:33:19.868 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:33:19.868 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:33:19.878 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:33:19.878 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:33:19.878 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:33:19.878 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:33:19.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36370 150\n [Camera]
17-03-17 17:33:20.078 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:33:20.468 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:33:20.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:33:20.468 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:20.468 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:33:20.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:33:20.468 -07 000000442 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:20.478 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:20.478 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:33:20.478 -07 000000442 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:20.478 -07 000000442 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:33:20.658 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36370 775
17-03-17 17:33:20.808 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:33:20.848 -07 000000442 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 17:33:20.848 -07 000000442 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 17:33:20.848 -07 000000442 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:20.848 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:33:20.848 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:33:20.848 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:20.848 -07 000000442 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:33:20.848 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:33:20.848 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:33:20.858 -07 000000442 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:33:20.998 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:33:20.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:33:20.998 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:20.998 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:33:20.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:33:20.998 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:20.998 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:20.998 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:33:21.008 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:21.008 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:33:21.188 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 17:33:21.188 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:33:21.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36370 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-17 17:33:21.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:33:21.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.165684713944109. ------
17-03-17 17:33:21.308 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17200 mm
17-03-17 17:33:21.308 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:33:21.318 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37573, sync = True, waitForSettling = False)
17-03-17 17:33:21.318 -07 000000382 INF: Z Motor: Moving to -0.171998 mm, started at -0.165685 mm, distance = -6.31 um
17-03-17 17:33:21.318 -07 000000442 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 17:33:21.318 -07 000000442 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 17:33:21.328 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:21.328 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:21.338 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 17:33:21.338 -07 000000382 INF: FPGA: Xmit ZDACW 37573\n [Z Motor]
17-03-17 17:33:21.338 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:33:21.348 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:21.348 -07 000000382 INF: FPGA: 'ZDACW 37573' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:33:21.348 -07 000000409 INF: FPGA: Recv YRDPOS 149866
17-03-17 17:33:21.358 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 38 ms overall
17-03-17 17:33:21.358 -07 000000442 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:21.358 -07 000000442 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:33:21.358 -07 000000442 INF: Y Motor: Moving 1353 steps-33
17-03-17 17:33:21.368 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:33:21.378 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:21.378 -07 000000618 INF: FPGA: Recv ZDACR 37573
17-03-17 17:33:21.388 -07 000000442 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:33:21.388 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 17:33:21.388 -07 000000382 INF: Z Motor: MoveAbsStepped took 69 ms (did NOT wait for settling yet))
17-03-17 17:33:21.388 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 17:33:21.388 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 17:33:21.388 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:21.388 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:33:21.388 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:33:21.388 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:21.388 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:21.398 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:33:21.398 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:33:21.398 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 17:33:21.508 -07 000000631 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:33:21.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:33:21.568 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:33:21.568 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 17:33:21.748 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.041198,
17-03-17 17:33:21.768 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 17:33:21.768 -07 000000442 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 407 ms overall
17-03-17 17:33:21.788 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:21.798 -07 000000459 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:33:21.798 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:33:21.798 -07 000000442 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:21.798 -07 000000442 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 17:33:21.798 -07 000000442 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.846 mm, average velocity = 2.079 mm/sec
17-03-17 17:33:22.748 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:22.748 -07 000000618 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:33:22.758 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:22.758 -07 000000442 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:22.768 -07 000000442 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:33:22.768 -07 000000442 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:33:22.768 -07 000000442 INF: Y Motor: Moved to 74.0088 after 1453 ms (table move)
17-03-17 17:33:22.768 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171998 mm (DAC = 37573)
17-03-17 17:33:22.768 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:22.778 -07 000000442 INF: FPGA: Recv ZSGSRD 36067
17-03-17 17:33:22.778 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:33:22.778 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:22.778 -07 000000459 INF: FPGA: Recv ZSGSRD 36066
17-03-17 17:33:22.788 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:22.788 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:22.788 -07 000000459 INF: FPGA: Recv ZSGSRD 36057
17-03-17 17:33:22.798 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:22.798 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:22.798 -07 000000459 INF: FPGA: Recv ZSGSRD 36066
17-03-17 17:33:22.808 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:22.808 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:22.808 -07 000000476 INF: FPGA: Recv ZSGSRD 36068
17-03-17 17:33:22.818 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:22.818 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:22.818 -07 000000442 INF: FPGA: Recv ZSGSRD 36060
17-03-17 17:33:22.828 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:22.828 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:22.828 -07 000000476 INF: FPGA: Recv ZSGSRD 36063
17-03-17 17:33:22.838 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:22.838 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:22.838 -07 000000442 INF: FPGA: Recv ZSGSRD 36062
17-03-17 17:33:22.848 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:22.848 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:22.848 -07 000000459 INF: FPGA: Recv ZSGSRD 36069
17-03-17 17:33:22.858 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:22.858 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:22.858 -07 000000476 INF: FPGA: Recv ZSGSRD 36067
17-03-17 17:33:22.868 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:22.868 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:22.868 -07 000000618 INF: FPGA: Recv ZPIEZORD 32078
17-03-17 17:33:22.878 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:22.878 -07 000000623 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -8.8 V.
17-03-17 17:33:22.878 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36064 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36066 (-171.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36057 (-171.1 uncal um), Max = 36069 (-171.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:33:22.878 -07 000000623 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36064, posNoise = 5, negNoise = 7
17-03-17 17:33:22.878 -07 000000623 INF: Z Motor: After move to -0.171998, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:22.878 -07 000000623 INF: Z Motor: Settle wait time = 1456 ms, measure time = 103 ms (allowed 150 ms), total time = 1559 ms
17-03-17 17:33:22.878 -07 000000623 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 17:33:22.928 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-17 17:33:22.928 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:33:22.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:22.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:22.928 -07 000000442 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:22.928 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:22.928 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:33:22.928 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:22.928 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:22.928 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:33:22.928 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:33:22.928 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:33:22.948 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:33:22.948 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:33:22.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:33:22.998 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:33:23.198 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:33:23.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:33:23.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:33:23.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:33:23.238 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:33:23.238 -07 000000442 INF: FPGA: Recv CAMSNAP
17-03-17 17:33:23.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 17:33:23.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:33:23.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:23.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:33:23.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:33:23.338 -07 000000561 INF: Autofocus start
17-03-17 17:33:23.338 -07 000000561 INF: MeasureProfile start
17-03-17 17:33:23.338 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:23.338 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:23.348 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:23.348 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:33:23.348 -07 000000561 INF: MeasureProfile done
17-03-17 17:33:23.348 -07 000000561 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:33:23.348 -07 000000561 INF: Autofocus finished
17-03-17 17:33:23.548 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:33:23.548 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:33:23.548 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.172006138691602. ----------
17-03-17 17:33:23.548 -07 000000610 INF: Cycle	2	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:33:23.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36088, sync = True, waitForSettling = True)
17-03-17 17:33:23.558 -07 000000610 INF: Z Motor: Moving to -0.165200 mm, started at -0.172006 mm, distance = 6.81 um
17-03-17 17:33:23.558 -07 000000610 INF: FPGA: Xmit ZDACW 36088\n [Z Motor]
17-03-17 17:33:23.558 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:33:23.568 -07 000000610 INF: FPGA: 'ZDACW 36088' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:23.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:23.568 -07 000000442 INF: FPGA: Recv ZDACR 36088
17-03-17 17:33:23.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:23.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:33:23.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:23.728 -07 000000618 INF: FPGA: Recv ZSGSRD 35010
17-03-17 17:33:23.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:23.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:23.738 -07 000000442 INF: FPGA: Recv ZSGSRD 35006
17-03-17 17:33:23.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:23.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:23.748 -07 000000561 INF: FPGA: Recv ZSGSRD 34999
17-03-17 17:33:23.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:23.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:23.758 -07 000000442 INF: FPGA: Recv ZSGSRD 35006
17-03-17 17:33:23.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:33:23.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:23.768 -07 000000476 INF: FPGA: Recv ZSGSRD 35013
17-03-17 17:33:23.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:23.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:23.778 -07 000000618 INF: FPGA: Recv ZSGSRD 35006
17-03-17 17:33:23.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:23.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:23.788 -07 000000459 INF: FPGA: Recv ZSGSRD 35002
17-03-17 17:33:23.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:23.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:23.798 -07 000000476 INF: FPGA: Recv ZSGSRD 35010
17-03-17 17:33:23.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:23.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:23.808 -07 000000561 INF: FPGA: Recv ZSGSRD 35010
17-03-17 17:33:23.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:23.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:23.818 -07 000000476 INF: FPGA: Recv ZSGSRD 35009
17-03-17 17:33:23.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:23.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:23.828 -07 000000442 INF: FPGA: Recv ZPIEZORD 30680
17-03-17 17:33:23.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:23.838 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.507 V. Piezo Error = -9.5 V.
17-03-17 17:33:23.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.2 um, Read 10 ADC samples: Avg = 35007 (-164.4 uncal um), Error = 0.8 uncal um, Median = 35008 (-164.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 34999 (-164.3 uncal um), Max = 35013 (-164.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:33:23.838 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35007, posNoise = 6, negNoise = 8
17-03-17 17:33:23.838 -07 000000610 INF: Z Motor: After move to -0.165200, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:23.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:33:23.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:23.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:23.838 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:33:23.838 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:33:23.838 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:23.838 -07 000000442 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:33:23.838 -07 000000442 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:23.838 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:23.838 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:33:23.838 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:33:23.838 -07 000000442 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:33:23.838 -07 000000442 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:33:23.838 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:33:23.838 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:33:23.838 -07 000000442 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:33:23.838 -07 000000442 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:33:23.848 -07 000000442 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:33:23.848 -07 000000442 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:33:23.848 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 17:33:23.848 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:33:23.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36265 150\n [Camera]
17-03-17 17:33:24.058 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:33:24.448 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:33:24.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:33:24.448 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:24.448 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:33:24.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:33:24.448 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:24.448 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:24.448 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:33:24.458 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:24.458 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:33:24.638 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36265 775
17-03-17 17:33:24.788 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:33:24.828 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:33:24.828 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:33:24.828 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:24.828 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:33:24.828 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 17:33:24.828 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:24.828 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:33:24.828 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:33:24.828 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:24.838 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:33:24.978 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:33:24.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:33:24.978 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:24.978 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:24.978 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) start.
17-03-17 17:33:24.978 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:33:24.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:33:24.978 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:24.978 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:24.978 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 17:33:25.168 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:33:25.168 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:33:25.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36265 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-17 17:33:25.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:33:25.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.165215746457761. ------
17-03-17 17:33:25.178 -07 000000442 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:25.178 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17144 mm
17-03-17 17:33:25.178 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:33:25.178 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:25.178 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37451, sync = True, waitForSettling = False)
17-03-17 17:33:25.178 -07 000000618 INF: Z Motor: Moving to -0.171440 mm, started at -0.165216 mm, distance = -6.22 um
17-03-17 17:33:25.178 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 17:33:25.178 -07 000000561 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 17:33:25.188 -07 000000442 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:25.188 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:25.188 -07 000000626 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:33:25.198 -07 000000618 INF: FPGA: Xmit ZDACW 37451\n [Z Motor]
17-03-17 17:33:25.198 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:33:25.198 -07 000000561 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:25.198 -07 000000561 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:33:25.198 -07 000000561 INF: Y Motor: Moving 1350 steps-28
17-03-17 17:33:25.198 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 17:33:25.208 -07 000000442 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:33:25.208 -07 000000618 INF: FPGA: 'ZDACW 37451' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:33:25.218 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:33:25.228 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:25.228 -07 000000608 INF: FPGA: Recv ZDACR 37451
17-03-17 17:33:25.238 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:33:25.238 -07 000000618 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 17:33:25.358 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:33:25.358 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:33:25.358 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:25.358 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:33:25.358 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:33:25.358 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:25.368 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:33:25.368 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 17:33:25.368 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 17:33:25.368 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:33:25.408 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:33:25.408 -07 000000442 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:33:25.588 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 17:33:25.588 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:33:25.608 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:25.618 -07 000000618 INF: FPGA: Recv YRDPOS 153256
17-03-17 17:33:25.618 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:33:25.618 -07 000000561 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:25.618 -07 000000561 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 17:33:25.618 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 17:33:26.508 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:33:26.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:33:26.568 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:26.568 -07 000000623 INF: FPGA: Recv YRDPOS 153257
17-03-17 17:33:26.578 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:26.578 -07 000000561 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:26.588 -07 000000561 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:33:26.588 -07 000000561 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:33:26.588 -07 000000561 INF: Y Motor: Moved to 74.8325 after 1410 ms (table move)
17-03-17 17:33:26.588 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171440 mm (DAC = 37451)
17-03-17 17:33:26.588 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:26.598 -07 000000608 INF: FPGA: Recv ZSGSRD 35974
17-03-17 17:33:26.598 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 17:33:26.598 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:26.598 -07 000000608 INF: FPGA: Recv ZSGSRD 35979
17-03-17 17:33:26.608 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:33:26.608 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:26.608 -07 000000608 INF: FPGA: Recv ZSGSRD 35978
17-03-17 17:33:26.618 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:26.618 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:26.618 -07 000000561 INF: FPGA: Recv ZSGSRD 35970
17-03-17 17:33:26.628 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:26.628 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:26.628 -07 000000608 INF: FPGA: Recv ZSGSRD 35974
17-03-17 17:33:26.638 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:26.638 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:26.638 -07 000000561 INF: FPGA: Recv ZSGSRD 35974
17-03-17 17:33:26.648 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:26.648 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:26.648 -07 000000608 INF: FPGA: Recv ZSGSRD 35979
17-03-17 17:33:26.658 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:26.658 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:26.658 -07 000000561 INF: FPGA: Recv ZSGSRD 35981
17-03-17 17:33:26.668 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:26.668 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:26.668 -07 000000561 INF: FPGA: Recv ZSGSRD 35980
17-03-17 17:33:26.678 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:26.678 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:26.678 -07 000000462 INF: FPGA: Recv ZSGSRD 35990
17-03-17 17:33:26.688 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:26.688 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:26.688 -07 000000561 INF: FPGA: Recv ZPIEZORD 31966
17-03-17 17:33:26.698 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:26.698 -07 000000476 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.715 V. Piezo Error = -8.9 V.
17-03-17 17:33:26.698 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35978 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35978 (-170.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 35970 (-170.5 uncal um), Max = 35990 (-170.7 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:33:26.698 -07 000000476 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35978, posNoise = 12, negNoise = 8
17-03-17 17:33:26.698 -07 000000476 INF: Z Motor: After move to -0.171440, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:26.698 -07 000000476 INF: Z Motor: Settle wait time = 1415 ms, measure time = 102 ms (allowed 150 ms), total time = 1517 ms
17-03-17 17:33:26.698 -07 000000476 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 17:33:26.748 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1569 ms
17-03-17 17:33:26.748 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:33:26.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:26.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:26.748 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:26.748 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:26.748 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:33:26.748 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:26.758 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:26.758 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:33:26.758 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:33:26.758 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:33:26.768 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:33:26.768 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:33:26.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:33:26.818 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:33:27.018 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:33:27.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:33:27.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:33:27.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172802376, 0x0, 559484976) start.
17-03-17 17:33:27.058 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:33:27.058 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 17:33:27.058 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 287 ms overall
17-03-17 17:33:27.108 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.05891,
17-03-17 17:33:27.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172802376, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:33:27.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:27.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:33:27.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:33:27.158 -07 000000608 INF: Autofocus start
17-03-17 17:33:27.158 -07 000000608 INF: MeasureProfile start
17-03-17 17:33:27.158 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:27.168 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:27.168 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:33:27.168 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:33:27.178 -07 000000608 INF: MeasureProfile done
17-03-17 17:33:27.178 -07 000000608 INF: X=32  Z correction [um]=0.09220707
17-03-17 17:33:27.178 -07 000000608 INF: Autofocus finished
17-03-17 17:33:27.368 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:33:27.368 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 17:33:27.368 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.171453656447411. ----------
17-03-17 17:33:27.378 -07 000000610 INF: Cycle	2	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:33:27.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35983, sync = True, waitForSettling = True)
17-03-17 17:33:27.378 -07 000000610 INF: Z Motor: Moving to -0.164720 mm, started at -0.171454 mm, distance = 6.73 um
17-03-17 17:33:27.378 -07 000000610 INF: FPGA: Xmit ZDACW 35983\n [Z Motor]
17-03-17 17:33:27.378 -07 000000442 INF: FPGA: Recv ZDACW
17-03-17 17:33:27.388 -07 000000610 INF: FPGA: 'ZDACW 35983' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:27.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:27.388 -07 000000608 INF: FPGA: Recv ZDACR 35983
17-03-17 17:33:27.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:27.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:33:27.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:27.548 -07 000000623 INF: FPGA: Recv ZSGSRD 34927
17-03-17 17:33:27.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:27.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:27.558 -07 000000608 INF: FPGA: Recv ZSGSRD 34932
17-03-17 17:33:27.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:27.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:27.568 -07 000000476 INF: FPGA: Recv ZSGSRD 34930
17-03-17 17:33:27.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:27.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:27.578 -07 000000459 INF: FPGA: Recv ZSGSRD 34928
17-03-17 17:33:27.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:27.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:27.588 -07 000000476 INF: FPGA: Recv ZSGSRD 34932
17-03-17 17:33:27.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:27.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:27.598 -07 000000459 INF: FPGA: Recv ZSGSRD 34936
17-03-17 17:33:27.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:27.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:27.608 -07 000000476 INF: FPGA: Recv ZSGSRD 34927
17-03-17 17:33:27.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:27.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:27.618 -07 000000459 INF: FPGA: Recv ZSGSRD 34930
17-03-17 17:33:27.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:27.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:27.628 -07 000000476 INF: FPGA: Recv ZSGSRD 34927
17-03-17 17:33:27.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:27.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:27.638 -07 000000459 INF: FPGA: Recv ZSGSRD 34934
17-03-17 17:33:27.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:27.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:27.648 -07 000000623 INF: FPGA: Recv ZPIEZORD 30625
17-03-17 17:33:27.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:27.658 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.491 V. Piezo Error = -9.5 V.
17-03-17 17:33:27.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.7 um, Read 10 ADC samples: Avg = 34930 (-163.9 uncal um), Error = 0.9 uncal um, Median = 34930 (-163.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 34927 (-163.8 uncal um), Max = 34936 (-163.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:33:27.658 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34930, posNoise = 6, negNoise = 3
17-03-17 17:33:27.658 -07 000000610 INF: Z Motor: After move to -0.164720, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:27.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:33:27.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:27.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:27.658 -07 000000442 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:27.658 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:33:27.658 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:33:27.658 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:27.658 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:33:27.658 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:27.658 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:33:27.658 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:33:27.658 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:33:27.658 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:33:27.668 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:33:27.668 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:33:27.668 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:33:27.668 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:33:27.668 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:33:27.668 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:33:27.678 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:33:27.678 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:33:27.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36160 150\n [Camera]
17-03-17 17:33:27.878 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:33:28.268 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:33:28.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:33:28.268 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:28.268 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:28.268 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-17 17:33:28.268 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:33:28.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:33:28.268 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:28.268 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:28.268 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:33:28.458 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36160 775
17-03-17 17:33:28.608 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:33:28.648 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 17:33:28.648 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 17:33:28.648 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:28.648 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:33:28.648 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:33:28.648 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:28.648 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:33:28.648 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:33:28.648 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:33:28.658 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:33:28.798 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:33:28.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:33:28.798 -07 000000442 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:28.798 -07 000000442 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:28.798 -07 000000442 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:33:28.798 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:33:28.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:33:28.798 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:28.798 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:28.798 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 17:33:28.988 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:33:28.988 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:33:28.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36160 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:33:29.178 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:33:29.178 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:33:29.178 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:29.178 -07 000000442 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:33:29.178 -07 000000442 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:33:29.178 -07 000000442 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:29.178 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:29.188 -07 000000442 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:33:29.188 -07 000000442 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:33:29.188 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 17:33:29.188 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:33:29.318 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 136 ms.
17-03-17 17:33:29.318 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 17:33:29.368 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 17:33:29.368 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 17:33:29.368 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 17:33:29.368 -07 000000459 INF: FPGA: Recv EMCUR 
17-03-17 17:33:29.378 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:29.378 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 17:33:29.878 -07 000000623 INF: FPGA: Recv EMIN
17-03-17 17:33:29.878 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 17:33:29.878 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 17:33:29.878 -07 000000608 INF: FPGA: Recv EMCUR 
17-03-17 17:33:29.888 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:29.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:33:29.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.164721082122845. ------
17-03-17 17:33:29.888 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:29.888 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13880 mm
17-03-17 17:33:29.888 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:33:29.888 -07 000000442 INF: Z Motor: Entering MoveAbsStepped (DAC = 30320, sync = True, waitForSettling = False)
17-03-17 17:33:29.888 -07 000000442 INF: Z Motor: Moving to -0.138796 mm, started at -0.164721 mm, distance = 25.93 um
17-03-17 17:33:29.888 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 17:33:29.888 -07 000000608 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 17:33:29.898 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:29.898 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:29.898 -07 000000442 INF: FPGA: Xmit ZDACW 30320\n [Z Motor]
17-03-17 17:33:29.898 -07 000000631 INF: FPGA: Recv ZDACW
17-03-17 17:33:29.908 -07 000000442 INF: FPGA: 'ZDACW 30320' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:33:29.908 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:33:29.918 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:29.918 -07 000000551 INF: FPGA: Recv YRDPOS 153258
17-03-17 17:33:29.928 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 17:33:29.928 -07 000000608 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:29.928 -07 000000442 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:29.928 -07 000000608 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 17:33:29.928 -07 000000608 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 17:33:29.928 -07 000000438 INF: FPGA: Recv ZDACR 30320
17-03-17 17:33:29.938 -07 000000442 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:33:29.938 -07 000000442 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 17:33:29.938 -07 000000608 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 17:33:30.108 -07 000000631 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:33:30.108 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 17:33:31.508 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:33:31.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:33:31.558 -07 000000631 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 17:33:31.558 -07 000000608 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1635 ms overall
17-03-17 17:33:31.558 -07 000000608 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 17:33:31.558 -07 000000608 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 17:33:31.558 -07 000000608 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1635 ms, distance = 14.920 mm, average velocity = 9.125 mm/sec
17-03-17 17:33:32.468 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.091548,
17-03-17 17:33:34.408 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:34.408 -07 000000631 INF: FPGA: Recv YRDPOS 122700
17-03-17 17:33:34.418 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:34.418 -07 000000608 INF: Y Motor: Encoder = 122700 = motor step 95859.4 = 59.9121 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:34.438 -07 000000608 INF: Y Motor: After move to 59.912609, error = -0.000500, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:33:34.438 -07 000000608 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = -3 counts (-0.001 mm)
17-03-17 17:33:34.438 -07 000000608 INF: Y Motor: Moved to 59.9121 after 4546 ms
17-03-17 17:33:34.438 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138796 mm (DAC = 30320)
17-03-17 17:33:34.438 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:34.448 -07 000000608 INF: FPGA: Recv ZSGSRD 30898
17-03-17 17:33:34.448 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 17:33:34.448 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:34.448 -07 000000608 INF: FPGA: Recv ZSGSRD 30900
17-03-17 17:33:34.458 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:33:34.458 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:34.458 -07 000000608 INF: FPGA: Recv ZSGSRD 30895
17-03-17 17:33:34.468 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:34.468 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:34.468 -07 000000608 INF: FPGA: Recv ZSGSRD 30894
17-03-17 17:33:34.478 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:34.478 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:34.478 -07 000000608 INF: FPGA: Recv ZSGSRD 30894
17-03-17 17:33:34.488 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:34.488 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:34.488 -07 000000608 INF: FPGA: Recv ZSGSRD 30898
17-03-17 17:33:34.498 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:34.498 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:34.498 -07 000000608 INF: FPGA: Recv ZSGSRD 30901
17-03-17 17:33:34.508 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:34.508 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:34.508 -07 000000409 INF: FPGA: Recv ZSGSRD 30900
17-03-17 17:33:34.518 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:34.518 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:34.518 -07 000000623 INF: FPGA: Recv ZSGSRD 30898
17-03-17 17:33:34.528 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:34.528 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:34.528 -07 000000623 INF: FPGA: Recv ZSGSRD 30901
17-03-17 17:33:34.538 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:34.538 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:34.538 -07 000000623 INF: FPGA: Recv ZPIEZORD 26391
17-03-17 17:33:34.548 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:34.548 -07 000000476 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.627 V. Piezo Error = -9.9 V.
17-03-17 17:33:34.548 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30898 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30898 (-138.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30894 (-138.0 uncal um), Max = 30901 (-138.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:33:34.548 -07 000000476 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30898, posNoise = 3, negNoise = 4
17-03-17 17:33:34.548 -07 000000476 INF: Z Motor: After move to -0.138796, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:34.548 -07 000000476 INF: Z Motor: Settle wait time = 4550 ms, measure time = 102 ms (allowed 150 ms), total time = 4652 ms
17-03-17 17:33:34.548 -07 000000476 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 17:33:34.598 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4704 ms
17-03-17 17:33:34.598 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:33:34.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:34.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:34.598 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:34.598 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:34.598 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:33:34.598 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:34.598 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:33:34.598 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 17:33:34.618 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 17:33:34.618 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:33:34.628 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:33:34.628 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:33:34.628 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:33:34.628 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-17 17:33:34.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:33:34.678 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:33:34.878 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:33:34.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:33:34.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:33:34.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:33:34.918 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:33:34.918 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 17:33:34.918 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 17:33:34.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:33:34.998 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:34.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:33:34.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:33:35.018 -07 000000478 INF: Image SNR check: start
17-03-17 17:33:35.018 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:35.018 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:35.028 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:33:35.028 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:33:35.038 -07 000000478 INF: Image SNR check: pass  [peak (Max-Min)=86.70]
17-03-17 17:33:35.038 -07 000000478 INF: Autofocus start
17-03-17 17:33:35.038 -07 000000478 INF: MeasureProfile start
17-03-17 17:33:35.048 -07 000000478 INF: MeasureProfile done
17-03-17 17:33:35.048 -07 000000478 INF: X=160  Z correction [um]=0.7457138
17-03-17 17:33:35.048 -07 000000478 INF: Autofocus finished
17-03-17 17:33:35.228 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:33:35.228 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:33:35.228 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.912109375, Z-position -0.138818658767265. ----------
17-03-17 17:33:35.238 -07 000000610 INF: Cycle	2	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:33:35.238 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28996, sync = True, waitForSettling = True)
17-03-17 17:33:35.238 -07 000000610 INF: Z Motor: Moving to -0.132735 mm, started at -0.138819 mm, distance = 6.08 um
17-03-17 17:33:35.238 -07 000000610 INF: FPGA: Xmit ZDACW 28996\n [Z Motor]
17-03-17 17:33:35.238 -07 000000442 INF: FPGA: Recv ZDACW
17-03-17 17:33:35.248 -07 000000610 INF: FPGA: 'ZDACW 28996' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:33:35.248 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:35.248 -07 000000486 INF: FPGA: Recv ZDACR 28996
17-03-17 17:33:35.258 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:35.258 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:33:35.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:35.408 -07 000000409 INF: FPGA: Recv ZSGSRD 29959
17-03-17 17:33:35.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:35.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:35.418 -07 000000551 INF: FPGA: Recv ZSGSRD 29952
17-03-17 17:33:35.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:35.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:35.428 -07 000000486 INF: FPGA: Recv ZSGSRD 29952
17-03-17 17:33:35.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:35.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:35.438 -07 000000551 INF: FPGA: Recv ZSGSRD 29944
17-03-17 17:33:35.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:35.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:35.448 -07 000000551 INF: FPGA: Recv ZSGSRD 29956
17-03-17 17:33:35.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:35.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:35.458 -07 000000476 INF: FPGA: Recv ZSGSRD 29952
17-03-17 17:33:35.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:35.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:35.468 -07 000000476 INF: FPGA: Recv ZSGSRD 29948
17-03-17 17:33:35.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:35.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:35.478 -07 000000409 INF: FPGA: Recv ZSGSRD 29954
17-03-17 17:33:35.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:35.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:35.488 -07 000000608 INF: FPGA: Recv ZSGSRD 29954
17-03-17 17:33:35.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:35.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:35.498 -07 000000486 INF: FPGA: Recv ZSGSRD 29954
17-03-17 17:33:35.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:35.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:35.508 -07 000000486 INF: FPGA: Recv ZPIEZORD 25403
17-03-17 17:33:35.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:35.518 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.425 V. Piezo Error = -10.0 V.
17-03-17 17:33:35.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29952 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29953 (-132.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29944 (-131.9 uncal um), Max = 29959 (-132.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:33:35.518 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29952, posNoise = 7, negNoise = 8
17-03-17 17:33:35.518 -07 000000610 INF: Z Motor: After move to -0.132735, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:35.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:33:35.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:35.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:35.518 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:35.518 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:35.518 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:33:35.518 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:33:35.518 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:35.518 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:33:35.518 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:35.518 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:33:35.518 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:33:35.518 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 17:33:35.528 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:33:35.528 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:33:35.538 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 17:33:35.538 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:33:35.538 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 17:33:35.538 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:33:35.548 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:33:35.548 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:33:35.548 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:33:35.548 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 17:33:35.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29173 150\n [Camera]
17-03-17 17:33:35.758 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 17:33:36.148 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:33:36.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:33:36.148 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:36.148 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:33:36.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:33:36.148 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:36.148 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:36.148 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:33:36.158 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:36.158 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:33:36.338 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29173 775
17-03-17 17:33:36.488 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:33:36.508 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:33:36.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:33:36.528 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:33:36.528 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 17:33:36.528 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:36.528 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:33:36.528 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:33:36.528 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:36.528 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:36.528 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:33:36.528 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:36.538 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:33:36.678 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:33:36.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:33:36.678 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:36.678 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:33:36.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:33:36.678 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:36.798 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:36.798 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:33:36.798 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:36.798 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) start.
17-03-17 17:33:36.868 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:33:36.868 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:33:36.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29173 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-17 17:33:36.868 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:33:36.868 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.912109375, Z-Position -0.132741354081159. ------
17-03-17 17:33:36.878 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:36.878 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13905 mm
17-03-17 17:33:36.878 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:33:36.878 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 17:33:36.878 -07 000000476 INF: Y Motor: Moving to 60.7426 mm, started at 59.9121 mm, delta = 0.8305 mm
17-03-17 17:33:36.888 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:37.168 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:33:37.168 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:33:37.168 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:37.178 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:33:37.178 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:33:37.178 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:37.178 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:33:37.178 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:33:37.178 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 501 ms.
17-03-17 17:33:37.188 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-17 17:33:37.188 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30376, sync = True, waitForSettling = False)
17-03-17 17:33:37.188 -07 000000551 INF: Z Motor: Moving to -0.139052 mm, started at -0.132741 mm, distance = -6.31 um
17-03-17 17:33:37.188 -07 000000551 INF: FPGA: Xmit ZDACW 30376\n [Z Motor]
17-03-17 17:33:37.188 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:37.188 -07 000000608 INF: FPGA: Recv YRDPOS 122700
17-03-17 17:33:37.188 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 309 ms to get response, and 319 ms overall
17-03-17 17:33:37.188 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 299 ms to get response, and 315 ms overall
17-03-17 17:33:37.188 -07 000000476 INF: Y Motor: Encoder = 122700 = motor step 95859.4 = 59.9121 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:37.198 -07 000000476 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:33:37.198 -07 000000476 INF: Y Motor: Moving 1329 steps2
17-03-17 17:33:37.198 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:33:37.198 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 17:33:37.198 -07 000000551 INF: FPGA: 'ZDACW 30376' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:33:37.208 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:33:37.218 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:37.218 -07 000000618 INF: FPGA: Recv ZDACR 30376
17-03-17 17:33:37.228 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 17:33:37.228 -07 000000551 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 17:33:37.398 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:33:37.398 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 17:33:37.578 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 17:33:37.578 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 17:33:37.608 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:37.608 -07 000000626 INF: FPGA: Recv YRDPOS 124383
17-03-17 17:33:37.618 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:37.618 -07 000000476 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:37.618 -07 000000476 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 17:33:37.618 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.830 mm, average velocity = 2.140 mm/sec
17-03-17 17:33:37.828 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.075228,
17-03-17 17:33:38.568 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:38.568 -07 000000551 INF: FPGA: Recv YRDPOS 124383
17-03-17 17:33:38.578 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:38.578 -07 000000476 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:38.588 -07 000000476 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:33:38.598 -07 000000476 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:33:38.598 -07 000000476 INF: Y Motor: Moved to 60.7339 after 1715 ms (table move)
17-03-17 17:33:38.598 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139052 mm (DAC = 30376)
17-03-17 17:33:38.598 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:38.598 -07 000000551 INF: FPGA: Recv ZSGSRD 30938
17-03-17 17:33:38.608 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:38.608 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:38.608 -07 000000608 INF: FPGA: Recv ZSGSRD 30935
17-03-17 17:33:38.618 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:38.618 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:38.618 -07 000000626 INF: FPGA: Recv ZSGSRD 30928
17-03-17 17:33:38.628 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:38.628 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:38.628 -07 000000462 INF: FPGA: Recv ZSGSRD 30931
17-03-17 17:33:38.638 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:38.638 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:38.638 -07 000000476 INF: FPGA: Recv ZSGSRD 30935
17-03-17 17:33:38.648 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:38.648 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:38.648 -07 000000626 INF: FPGA: Recv ZSGSRD 30941
17-03-17 17:33:38.658 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:38.658 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:38.658 -07 000000608 INF: FPGA: Recv ZSGSRD 30937
17-03-17 17:33:38.668 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:38.668 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:38.668 -07 000000618 INF: FPGA: Recv ZSGSRD 30934
17-03-17 17:33:38.678 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:38.678 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:38.678 -07 000000462 INF: FPGA: Recv ZSGSRD 30940
17-03-17 17:33:38.688 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:38.688 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:38.688 -07 000000476 INF: FPGA: Recv ZSGSRD 30935
17-03-17 17:33:38.698 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:38.698 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:38.698 -07 000000551 INF: FPGA: Recv ZPIEZORD 26710
17-03-17 17:33:38.708 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:38.708 -07 000000409 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.635 V. Piezo Error = -9.3 V.
17-03-17 17:33:38.708 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30935 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30935 (-138.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30928 (-138.2 uncal um), Max = 30941 (-138.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:33:38.708 -07 000000409 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30935, posNoise = 6, negNoise = 7
17-03-17 17:33:38.708 -07 000000409 INF: Z Motor: After move to -0.139052, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:38.708 -07 000000409 INF: Z Motor: Settle wait time = 1404 ms, measure time = 108 ms (allowed 150 ms), total time = 1512 ms
17-03-17 17:33:38.708 -07 000000409 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:33:38.758 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1879 ms
17-03-17 17:33:38.758 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:33:38.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:38.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:38.758 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:38.758 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:33:38.758 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:38.758 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:38.758 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:38.758 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:33:38.768 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:33:38.768 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:33:38.778 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:33:38.778 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:33:38.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:33:38.828 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:33:39.028 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:33:39.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:33:39.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:33:39.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1068207720, 0x0, 559484976) start.
17-03-17 17:33:39.068 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:33:39.068 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 17:33:39.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 17:33:39.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1068207720, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:33:39.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:39.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:33:39.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:33:39.168 -07 000000551 INF: Autofocus start
17-03-17 17:33:39.168 -07 000000551 INF: MeasureProfile start
17-03-17 17:33:39.168 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:39.168 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:39.178 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:39.178 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:33:39.178 -07 000000551 INF: MeasureProfile done
17-03-17 17:33:39.178 -07 000000551 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:33:39.178 -07 000000551 INF: Autofocus finished
17-03-17 17:33:39.378 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:33:39.378 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:33:39.378 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.13905635461651. ----------
17-03-17 17:33:39.378 -07 000000610 INF: Cycle	2	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:33:39.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28900, sync = True, waitForSettling = True)
17-03-17 17:33:39.388 -07 000000610 INF: Z Motor: Moving to -0.132296 mm, started at -0.139056 mm, distance = 6.76 um
17-03-17 17:33:39.388 -07 000000610 INF: FPGA: Xmit ZDACW 28900\n [Z Motor]
17-03-17 17:33:39.388 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:33:39.398 -07 000000610 INF: FPGA: 'ZDACW 28900' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:39.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:39.398 -07 000000486 INF: FPGA: Recv ZDACR 28900
17-03-17 17:33:39.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:39.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:33:39.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:39.558 -07 000000409 INF: FPGA: Recv ZSGSRD 29887
17-03-17 17:33:39.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:39.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:39.568 -07 000000626 INF: FPGA: Recv ZSGSRD 29882
17-03-17 17:33:39.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:39.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:39.578 -07 000000608 INF: FPGA: Recv ZSGSRD 29887
17-03-17 17:33:39.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:39.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:39.588 -07 000000626 INF: FPGA: Recv ZSGSRD 29882
17-03-17 17:33:39.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:39.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:39.598 -07 000000409 INF: FPGA: Recv ZSGSRD 29885
17-03-17 17:33:39.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:39.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:39.608 -07 000000618 INF: FPGA: Recv ZSGSRD 29892
17-03-17 17:33:39.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:39.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:39.618 -07 000000551 INF: FPGA: Recv ZSGSRD 29879
17-03-17 17:33:39.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:39.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:39.628 -07 000000462 INF: FPGA: Recv ZSGSRD 29885
17-03-17 17:33:39.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:39.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:39.638 -07 000000486 INF: FPGA: Recv ZSGSRD 29880
17-03-17 17:33:39.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:39.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:39.648 -07 000000626 INF: FPGA: Recv ZSGSRD 29887
17-03-17 17:33:39.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:39.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:39.658 -07 000000626 INF: FPGA: Recv ZPIEZORD 25366
17-03-17 17:33:39.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:33:39.668 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -9.9 V.
17-03-17 17:33:39.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29885 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29885 (-131.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29879 (-131.5 uncal um), Max = 29892 (-131.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:33:39.668 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29885, posNoise = 7, negNoise = 6
17-03-17 17:33:39.668 -07 000000610 INF: Z Motor: After move to -0.132296, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:39.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:33:39.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:39.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:39.668 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:33:39.668 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:33:39.668 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:39.668 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:39.668 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:33:39.668 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:39.668 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:33:39.668 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:33:39.668 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:33:39.668 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:33:39.668 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:33:39.668 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:33:39.678 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:33:39.678 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:33:39.688 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 17:33:39.688 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:33:39.688 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 17:33:39.688 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:33:39.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29077 150\n [Camera]
17-03-17 17:33:39.888 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:33:40.278 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:33:40.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:33:40.288 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:40.288 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:40.288 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:33:40.288 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:33:40.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:33:40.288 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:40.288 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:40.288 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1137380112, 0x0, 418435064) start.
17-03-17 17:33:40.478 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29077 775
17-03-17 17:33:40.628 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:33:40.678 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 17:33:40.678 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 17:33:40.678 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:40.688 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1137380112, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 17:33:40.688 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 17:33:40.688 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:40.688 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:33:40.688 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:33:40.688 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:40.698 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 17:33:40.818 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:33:40.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:33:40.818 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:40.818 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:40.818 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:33:40.818 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:33:40.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:33:40.818 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:40.818 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:40.818 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 17:33:41.008 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:33:41.008 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:33:41.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29077 150' command took 3 ms to send, 1301 ms to get response, and 1313 ms overall
17-03-17 17:33:41.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:33:41.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.132310931867661. ------
17-03-17 17:33:41.018 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:41.018 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13903 mm
17-03-17 17:33:41.018 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:33:41.018 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 17:33:41.018 -07 000000462 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 17:33:41.028 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:41.218 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 17:33:41.218 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 17:33:41.218 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:41.218 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 17:33:41.218 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 17:33:41.218 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:41.228 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:41.228 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:33:41.228 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 17:33:41.228 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 17:33:41.238 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30370, sync = True, waitForSettling = False)
17-03-17 17:33:41.238 -07 000000618 INF: Z Motor: Moving to -0.139025 mm, started at -0.132311 mm, distance = -6.71 um
17-03-17 17:33:41.238 -07 000000618 INF: FPGA: Xmit ZDACW 30370\n [Z Motor]
17-03-17 17:33:41.238 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:41.238 -07 000000551 INF: FPGA: Recv YRDPOS 124384
17-03-17 17:33:41.238 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 216 ms to get response, and 226 ms overall
17-03-17 17:33:41.238 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 206 ms to get response, and 223 ms overall
17-03-17 17:33:41.238 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:33:41.238 -07 000000462 INF: Y Motor: Encoder = 124384 = motor step 97175.0 = 60.7344 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:41.248 -07 000000618 INF: FPGA: 'ZDACW 30370' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:41.248 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:41.248 -07 000000462 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:33:41.248 -07 000000462 INF: Y Motor: Moving 1341 steps-18
17-03-17 17:33:41.248 -07 000000551 INF: FPGA: Recv ZDACR 30370
17-03-17 17:33:41.258 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:33:41.258 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:41.258 -07 000000618 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-17 17:33:41.268 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:33:41.458 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:33:41.458 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 215 ms overall
17-03-17 17:33:41.508 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:33:41.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:33:41.658 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 17:33:41.658 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 16 ms to send, 374 ms to get response, and 412 ms overall
17-03-17 17:33:41.688 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:41.688 -07 000000618 INF: FPGA: Recv YRDPOS 126085
17-03-17 17:33:41.698 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:33:41.698 -07 000000462 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:41.698 -07 000000462 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 17:33:41.698 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 413 ms, distance = 0.839 mm, average velocity = 2.031 mm/sec
17-03-17 17:33:42.648 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:42.648 -07 000000551 INF: FPGA: Recv YRDPOS 126085
17-03-17 17:33:42.658 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:42.658 -07 000000462 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:42.668 -07 000000462 INF: Y Motor: After move to 61.572609, error = -0.007668, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:33:42.668 -07 000000462 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:33:42.668 -07 000000462 INF: Y Motor: Moved to 61.5649 after 1656 ms (table move)
17-03-17 17:33:42.678 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139025 mm (DAC = 30370)
17-03-17 17:33:42.678 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:42.678 -07 000000551 INF: FPGA: Recv ZSGSRD 30936
17-03-17 17:33:42.688 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:33:42.688 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:42.688 -07 000000462 INF: FPGA: Recv ZSGSRD 30920
17-03-17 17:33:42.698 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:42.698 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:42.698 -07 000000551 INF: FPGA: Recv ZSGSRD 30920
17-03-17 17:33:42.708 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:42.708 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:42.708 -07 000000462 INF: FPGA: Recv ZSGSRD 30937
17-03-17 17:33:42.718 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:42.718 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:42.718 -07 000000475 INF: FPGA: Recv ZSGSRD 30940
17-03-17 17:33:42.728 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:42.728 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:42.728 -07 000000618 INF: FPGA: Recv ZSGSRD 30940
17-03-17 17:33:42.738 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:42.738 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:42.738 -07 000000475 INF: FPGA: Recv ZSGSRD 30928
17-03-17 17:33:42.748 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:42.748 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:42.748 -07 000000618 INF: FPGA: Recv ZSGSRD 30930
17-03-17 17:33:42.758 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:42.758 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:42.758 -07 000000551 INF: FPGA: Recv ZSGSRD 30922
17-03-17 17:33:42.768 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:42.768 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:42.768 -07 000000475 INF: FPGA: Recv ZSGSRD 30927
17-03-17 17:33:42.778 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:42.778 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:42.778 -07 000000475 INF: FPGA: Recv ZPIEZORD 26762
17-03-17 17:33:42.788 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:42.788 -07 000000626 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.634 V. Piezo Error = -9.2 V.
17-03-17 17:33:42.788 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30930 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30929 (-138.2 uncal um), StdDev = 8 (0.1 uncal um), Range = 20 (0.1 uncal um), Min = 30920 (-138.2 uncal um), Max = 30940 (-138.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:33:42.788 -07 000000626 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30930, posNoise = 10, negNoise = 10
17-03-17 17:33:42.788 -07 000000626 INF: Z Motor: After move to -0.139025, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:42.788 -07 000000626 INF: Z Motor: Settle wait time = 1439 ms, measure time = 108 ms (allowed 150 ms), total time = 1547 ms
17-03-17 17:33:42.788 -07 000000626 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:33:42.838 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1819 ms
17-03-17 17:33:42.838 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:33:42.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:42.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:42.838 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:42.838 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:42.838 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:33:42.838 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:42.838 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:42.838 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:33:42.848 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:33:42.848 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:33:42.858 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:33:42.858 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:33:42.878 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:33:42.918 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:33:43.118 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:33:43.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:33:43.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:33:43.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:33:43.158 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:33:43.158 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 17:33:43.158 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 296 ms overall
17-03-17 17:33:43.188 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.071149,
17-03-17 17:33:43.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 17:33:43.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:43.238 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:33:43.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 17:33:43.258 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:43.258 -07 000000627 INF: Autofocus start
17-03-17 17:33:43.258 -07 000000627 INF: MeasureProfile start
17-03-17 17:33:43.258 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:43.268 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:33:43.268 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:33:43.278 -07 000000627 INF: MeasureProfile done
17-03-17 17:33:43.278 -07 000000627 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:33:43.278 -07 000000627 INF: Autofocus finished
17-03-17 17:33:43.468 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:33:43.468 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:33:43.468 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56494140625, Z-position -0.139024233555801. ----------
17-03-17 17:33:43.468 -07 000000610 INF: Cycle	2	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:33:43.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28877, sync = True, waitForSettling = True)
17-03-17 17:33:43.478 -07 000000610 INF: Z Motor: Moving to -0.132190 mm, started at -0.139024 mm, distance = 6.83 um
17-03-17 17:33:43.478 -07 000000610 INF: FPGA: Xmit ZDACW 28877\n [Z Motor]
17-03-17 17:33:43.478 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:33:43.488 -07 000000610 INF: FPGA: 'ZDACW 28877' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:43.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:43.488 -07 000000551 INF: FPGA: Recv ZDACR 28877
17-03-17 17:33:43.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:43.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:33:43.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:43.648 -07 000000551 INF: FPGA: Recv ZSGSRD 29872
17-03-17 17:33:43.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:43.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:43.658 -07 000000618 INF: FPGA: Recv ZSGSRD 29872
17-03-17 17:33:43.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:43.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:43.668 -07 000000551 INF: FPGA: Recv ZSGSRD 29862
17-03-17 17:33:43.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:43.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:43.678 -07 000000626 INF: FPGA: Recv ZSGSRD 29863
17-03-17 17:33:43.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:43.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:43.688 -07 000000627 INF: FPGA: Recv ZSGSRD 29868
17-03-17 17:33:43.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:43.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:43.698 -07 000000618 INF: FPGA: Recv ZSGSRD 29867
17-03-17 17:33:43.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:43.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:43.708 -07 000000561 INF: FPGA: Recv ZSGSRD 29865
17-03-17 17:33:43.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:43.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:43.718 -07 000000475 INF: FPGA: Recv ZSGSRD 29866
17-03-17 17:33:43.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:43.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:43.728 -07 000000627 INF: FPGA: Recv ZSGSRD 29874
17-03-17 17:33:43.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:43.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:43.738 -07 000000626 INF: FPGA: Recv ZSGSRD 29865
17-03-17 17:33:43.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:43.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:43.748 -07 000000561 INF: FPGA: Recv ZPIEZORD 25377
17-03-17 17:33:43.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:43.758 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.406 V. Piezo Error = -9.9 V.
17-03-17 17:33:43.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29867 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29866 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29862 (-131.4 uncal um), Max = 29874 (-131.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:33:43.758 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29867, posNoise = 7, negNoise = 5
17-03-17 17:33:43.758 -07 000000610 INF: Z Motor: After move to -0.132190, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:43.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:33:43.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:43.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:43.758 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:43.758 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:43.758 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:33:43.758 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:33:43.758 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:33:43.758 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:43.758 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:33:43.758 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:33:43.758 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:43.758 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:33:43.768 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 17:33:43.768 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:33:43.768 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-17 17:33:43.768 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:33:43.778 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:33:43.778 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:33:43.778 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:33:43.778 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:33:43.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29054 150\n [Camera]
17-03-17 17:33:43.978 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:33:44.368 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:33:44.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:33:44.368 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:44.368 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:44.368 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:33:44.378 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:33:44.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:33:44.378 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:44.378 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:44.378 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 17:33:44.568 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29054 775
17-03-17 17:33:44.708 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:33:44.748 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:33:44.748 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 17:33:44.748 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:44.748 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 17:33:44.748 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 17:33:44.748 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:44.748 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:44.758 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:44.758 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:33:44.758 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 17:33:44.898 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:33:44.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:33:44.898 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:44.898 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:44.898 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 17:33:44.908 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:33:44.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:33:44.908 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:44.908 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:44.908 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 17:33:45.088 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:33:45.098 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:33:45.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29054 150' command took 2 ms to send, 1303 ms to get response, and 1315 ms overall
17-03-17 17:33:45.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:33:45.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56494140625, Z-Position -0.13219529604911. ------
17-03-17 17:33:45.098 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:45.098 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13853 mm
17-03-17 17:33:45.098 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:33:45.108 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 17:33:45.108 -07 000000551 INF: Y Motor: Moving to 62.4026 mm, started at 61.5649 mm, delta = 0.8377 mm
17-03-17 17:33:45.108 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:45.108 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30262, sync = True, waitForSettling = False)
17-03-17 17:33:45.108 -07 000000626 INF: Z Motor: Moving to -0.138531 mm, started at -0.132195 mm, distance = -6.34 um
17-03-17 17:33:45.118 -07 000000626 INF: FPGA: Xmit ZDACW 30262\n [Z Motor]
17-03-17 17:33:45.288 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:33:45.288 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 17:33:45.288 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:45.288 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:33:45.288 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:33:45.288 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:45.288 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:33:45.288 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:33:45.288 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:33:45.298 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:33:45.338 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:45.338 -07 000000618 INF: FPGA: Recv YRDPOS 126086
17-03-17 17:33:45.338 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:33:45.338 -07 000000626 INF: FPGA: 'ZDACW 30262' command took 0 ms to send, 212 ms to get response, and 230 ms overall
17-03-17 17:33:45.338 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:45.338 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 232 ms to get response, and 234 ms overall
17-03-17 17:33:45.338 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 222 ms to get response, and 231 ms overall
17-03-17 17:33:45.338 -07 000000551 INF: Y Motor: Encoder = 126086 = motor step 98504.7 = 61.5654 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:45.338 -07 000000618 INF: FPGA: Recv ZDACR 30262
17-03-17 17:33:45.338 -07 000000551 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:33:45.338 -07 000000551 INF: Y Motor: Moving 1339 steps-16
17-03-17 17:33:45.348 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:33:45.348 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:45.348 -07 000000626 INF: Z Motor: MoveAbsStepped took 237 ms (did NOT wait for settling yet))
17-03-17 17:33:45.358 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:33:45.558 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:33:45.558 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 219 ms overall
17-03-17 17:33:45.718 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 17:33:45.718 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-17 17:33:45.748 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:45.758 -07 000000626 INF: FPGA: Recv YRDPOS 127788
17-03-17 17:33:45.758 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 5 ms to get response, and 7 ms overall
17-03-17 17:33:45.758 -07 000000551 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:45.758 -07 000000551 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 17:33:45.758 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.838 mm, average velocity = 2.210 mm/sec
17-03-17 17:33:46.508 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:33:46.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:33:46.708 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:46.708 -07 000000626 INF: FPGA: Recv YRDPOS 127788
17-03-17 17:33:46.718 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:46.718 -07 000000551 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:46.728 -07 000000551 INF: Y Motor: After move to 62.402607, error = -0.006123, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:33:46.728 -07 000000551 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:33:46.728 -07 000000551 INF: Y Motor: Moved to 62.3965 after 1625 ms (table move)
17-03-17 17:33:46.738 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138531 mm (DAC = 30262)
17-03-17 17:33:46.738 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:46.738 -07 000000618 INF: FPGA: Recv ZSGSRD 30859
17-03-17 17:33:46.748 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:46.748 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:46.748 -07 000000459 INF: FPGA: Recv ZSGSRD 30849
17-03-17 17:33:46.758 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:46.758 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:46.758 -07 000000551 INF: FPGA: Recv ZSGSRD 30855
17-03-17 17:33:46.768 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:46.768 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:46.768 -07 000000626 INF: FPGA: Recv ZSGSRD 30856
17-03-17 17:33:46.778 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:46.778 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:46.778 -07 000000551 INF: FPGA: Recv ZSGSRD 30853
17-03-17 17:33:46.788 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:46.788 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:46.788 -07 000000459 INF: FPGA: Recv ZSGSRD 30863
17-03-17 17:33:46.798 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:46.798 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:46.798 -07 000000551 INF: FPGA: Recv ZSGSRD 30851
17-03-17 17:33:46.808 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:46.808 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:46.808 -07 000000459 INF: FPGA: Recv ZSGSRD 30859
17-03-17 17:33:46.818 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:46.818 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:46.818 -07 000000618 INF: FPGA: Recv ZSGSRD 30854
17-03-17 17:33:46.828 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:46.828 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:46.828 -07 000000459 INF: FPGA: Recv ZSGSRD 30847
17-03-17 17:33:46.838 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:46.838 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:46.838 -07 000000626 INF: FPGA: Recv ZPIEZORD 26665
17-03-17 17:33:46.848 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:46.848 -07 000000438 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -9.2 V.
17-03-17 17:33:46.848 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30855 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30854 (-137.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30847 (-137.7 uncal um), Max = 30863 (-137.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:33:46.848 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30855, posNoise = 8, negNoise = 8
17-03-17 17:33:46.848 -07 000000438 INF: Z Motor: After move to -0.138531, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:46.848 -07 000000438 INF: Z Motor: Settle wait time = 1627 ms, measure time = 112 ms (allowed 150 ms), total time = 1739 ms
17-03-17 17:33:46.848 -07 000000438 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 17:33:46.888 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1781 ms
17-03-17 17:33:46.888 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:33:46.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:46.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:46.888 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:46.888 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:33:46.888 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:46.888 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:46.888 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:46.888 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:33:46.888 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:33:46.888 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:33:46.908 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:33:46.908 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:33:46.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:33:46.958 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:33:47.158 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:33:47.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:33:47.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:33:47.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 17:33:47.198 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:33:47.198 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 17:33:47.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 17:33:47.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:33:47.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:47.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:33:47.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:33:47.298 -07 000000551 INF: Autofocus start
17-03-17 17:33:47.298 -07 000000551 INF: MeasureProfile start
17-03-17 17:33:47.298 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:47.298 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:47.308 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:47.308 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:33:47.308 -07 000000551 INF: MeasureProfile done
17-03-17 17:33:47.308 -07 000000551 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:33:47.308 -07 000000551 INF: Autofocus finished
17-03-17 17:33:47.508 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:33:47.508 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:33:47.508 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.396484375, Z-position -0.138542417645169. ----------
17-03-17 17:33:47.518 -07 000000610 INF: Cycle	2	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:33:47.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28786, sync = True, waitForSettling = True)
17-03-17 17:33:47.518 -07 000000610 INF: Z Motor: Moving to -0.131774 mm, started at -0.138542 mm, distance = 6.77 um
17-03-17 17:33:47.518 -07 000000610 INF: FPGA: Xmit ZDACW 28786\n [Z Motor]
17-03-17 17:33:47.518 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:33:47.528 -07 000000610 INF: FPGA: 'ZDACW 28786' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:33:47.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:47.528 -07 000000438 INF: FPGA: Recv ZDACR 28786
17-03-17 17:33:47.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:47.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:33:47.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:47.688 -07 000000551 INF: FPGA: Recv ZSGSRD 29804
17-03-17 17:33:47.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:47.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:47.698 -07 000000438 INF: FPGA: Recv ZSGSRD 29794
17-03-17 17:33:47.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:47.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:47.708 -07 000000382 INF: FPGA: Recv ZSGSRD 29797
17-03-17 17:33:47.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:47.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:47.718 -07 000000459 INF: FPGA: Recv ZSGSRD 29803
17-03-17 17:33:47.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:47.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:47.728 -07 000000626 INF: FPGA: Recv ZSGSRD 29801
17-03-17 17:33:47.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:47.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:47.738 -07 000000438 INF: FPGA: Recv ZSGSRD 29804
17-03-17 17:33:47.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:47.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:47.748 -07 000000382 INF: FPGA: Recv ZSGSRD 29802
17-03-17 17:33:47.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:47.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:47.758 -07 000000618 INF: FPGA: Recv ZSGSRD 29800
17-03-17 17:33:47.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:47.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:47.768 -07 000000551 INF: FPGA: Recv ZSGSRD 29801
17-03-17 17:33:47.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:47.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:47.778 -07 000000438 INF: FPGA: Recv ZSGSRD 29802
17-03-17 17:33:47.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:47.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:47.788 -07 000000551 INF: FPGA: Recv ZPIEZORD 25294
17-03-17 17:33:47.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:47.798 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.9 V.
17-03-17 17:33:47.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29801 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29802 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29794 (-130.9 uncal um), Max = 29804 (-131.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:33:47.798 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29801, posNoise = 3, negNoise = 7
17-03-17 17:33:47.798 -07 000000610 INF: Z Motor: After move to -0.131774, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:47.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:33:47.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:47.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:47.798 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:47.798 -07 000000442 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:47.798 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:33:47.798 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:47.798 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:33:47.798 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:33:47.798 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:33:47.798 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:33:47.798 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:33:47.798 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:33:47.798 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:33:47.798 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:33:47.808 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:33:47.808 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:33:47.808 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:33:47.808 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:33:47.818 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:33:47.818 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:33:47.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28963 150\n [Camera]
17-03-17 17:33:48.018 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:33:48.408 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:33:48.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:33:48.408 -07 000000442 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:48.408 -07 000000442 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:48.408 -07 000000442 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 17:33:48.408 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:33:48.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:33:48.408 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:48.408 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:48.408 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 17:33:48.558 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.084713,
17-03-17 17:33:48.598 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28963 777
17-03-17 17:33:48.748 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:33:48.788 -07 000000442 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:33:48.788 -07 000000442 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:33:48.788 -07 000000442 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:48.788 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:33:48.788 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:33:48.788 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:48.788 -07 000000442 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:33:48.788 -07 000000442 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:33:48.788 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:33:48.798 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:33:48.938 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:33:48.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:33:48.938 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:33:48.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:33:48.938 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:49.068 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:49.068 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:49.068 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 17:33:49.068 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:49.068 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 17:33:49.128 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:33:49.128 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:33:49.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28963 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:33:49.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:33:49.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.396484375, Z-Position -0.131771298047753. ------
17-03-17 17:33:49.138 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:49.138 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13856 mm
17-03-17 17:33:49.138 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:33:49.138 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:49.138 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30268, sync = True, waitForSettling = False)
17-03-17 17:33:49.138 -07 000000442 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 17:33:49.138 -07 000000442 INF: Y Motor: Moving to 63.2326 mm, started at 62.3965 mm, delta = 0.8361 mm
17-03-17 17:33:49.138 -07 000000618 INF: Z Motor: Moving to -0.138558 mm, started at -0.131771 mm, distance = -6.79 um
17-03-17 17:33:49.148 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:49.148 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:49.148 -07 000000486 INF: FPGA: Recv YRDPOS 127789
17-03-17 17:33:49.158 -07 000000618 INF: FPGA: Xmit ZDACW 30268\n [Z Motor]
17-03-17 17:33:49.158 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:33:49.158 -07 000000442 INF: Y Motor: Encoder = 127789 = motor step 99835.2 = 62.3970 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:49.158 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:33:49.158 -07 000000442 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:33:49.158 -07 000000442 INF: Y Motor: Moving 1337 steps-13
17-03-17 17:33:49.168 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:33:49.168 -07 000000618 INF: FPGA: 'ZDACW 30268' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:33:49.178 -07 000000442 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:33:49.188 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:49.188 -07 000000623 INF: FPGA: Recv ZDACR 30268
17-03-17 17:33:49.198 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:33:49.198 -07 000000618 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 17:33:49.368 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:33:49.368 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:33:49.448 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:33:49.448 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:33:49.448 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:49.448 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 17:33:49.448 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:33:49.448 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:49.448 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:49.448 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:49.458 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 17:33:49.458 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:33:49.548 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 17:33:49.548 -07 000000442 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 17:33:49.578 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:49.588 -07 000000409 INF: FPGA: Recv YRDPOS 129485
17-03-17 17:33:49.588 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:33:49.588 -07 000000442 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:49.588 -07 000000442 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 17:33:49.588 -07 000000442 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.836 mm, average velocity = 2.128 mm/sec
17-03-17 17:33:50.538 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:50.538 -07 000000478 INF: FPGA: Recv YRDPOS 129486
17-03-17 17:33:50.548 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:50.548 -07 000000442 INF: Y Motor: Encoder = 129486 = motor step 101160.9 = 63.2256 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:50.558 -07 000000442 INF: Y Motor: After move to 63.232609, error = -0.007023, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:33:50.558 -07 000000442 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:33:50.558 -07 000000442 INF: Y Motor: Moved to 63.2256 after 1423 ms (table move)
17-03-17 17:33:50.568 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138558 mm (DAC = 30268)
17-03-17 17:33:50.568 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:50.568 -07 000000623 INF: FPGA: Recv ZSGSRD 30864
17-03-17 17:33:50.578 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:33:50.578 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:50.578 -07 000000551 INF: FPGA: Recv ZSGSRD 30851
17-03-17 17:33:50.588 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:50.588 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:50.588 -07 000000551 INF: FPGA: Recv ZSGSRD 30847
17-03-17 17:33:50.598 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:50.598 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:50.598 -07 000000478 INF: FPGA: Recv ZSGSRD 30861
17-03-17 17:33:50.608 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:50.608 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:50.608 -07 000000442 INF: FPGA: Recv ZSGSRD 30860
17-03-17 17:33:50.618 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:50.618 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:50.618 -07 000000478 INF: FPGA: Recv ZSGSRD 30866
17-03-17 17:33:50.628 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:50.628 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:50.628 -07 000000478 INF: FPGA: Recv ZSGSRD 30866
17-03-17 17:33:50.638 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:50.638 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:50.638 -07 000000551 INF: FPGA: Recv ZSGSRD 30863
17-03-17 17:33:50.648 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:50.648 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:50.648 -07 000000478 INF: FPGA: Recv ZSGSRD 30860
17-03-17 17:33:50.658 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:50.658 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:50.658 -07 000000551 INF: FPGA: Recv ZSGSRD 30864
17-03-17 17:33:50.668 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:50.668 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:50.668 -07 000000478 INF: FPGA: Recv ZPIEZORD 26683
17-03-17 17:33:50.678 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:50.678 -07 000000438 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.619 V. Piezo Error = -9.2 V.
17-03-17 17:33:50.678 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30860 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30862 (-137.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30847 (-137.7 uncal um), Max = 30866 (-137.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 17:33:50.678 -07 000000438 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30860, posNoise = 6, negNoise = 13
17-03-17 17:33:50.678 -07 000000438 INF: Z Motor: After move to -0.138558, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:50.678 -07 000000438 INF: Z Motor: Settle wait time = 1427 ms, measure time = 110 ms (allowed 150 ms), total time = 1537 ms
17-03-17 17:33:50.678 -07 000000438 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 17:33:50.718 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1579 ms
17-03-17 17:33:50.718 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:33:50.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:50.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:50.718 -07 000000442 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:50.718 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:50.718 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:33:50.718 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:50.718 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:50.718 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:33:50.728 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:33:50.728 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:33:50.728 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:33:50.728 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:33:50.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:33:50.778 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:33:50.978 -07 000000442 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:33:50.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:33:50.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:33:50.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1051332656, 0x0, 559484976) start.
17-03-17 17:33:51.018 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:33:51.018 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 17:33:51.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 17:33:51.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1051332656, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:33:51.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:51.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:33:51.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:33:51.118 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:51.118 -07 000000442 INF: Autofocus start
17-03-17 17:33:51.118 -07 000000442 INF: MeasureProfile start
17-03-17 17:33:51.118 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:51.128 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:51.128 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:33:51.128 -07 000000442 INF: MeasureProfile done
17-03-17 17:33:51.128 -07 000000442 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 17:33:51.128 -07 000000442 INF: Autofocus finished
17-03-17 17:33:51.328 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:33:51.328 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:33:51.328 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2255859375, Z-position -0.138574538705878. ----------
17-03-17 17:33:51.328 -07 000000610 INF: Cycle	2	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:33:51.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28763, sync = True, waitForSettling = True)
17-03-17 17:33:51.338 -07 000000610 INF: Z Motor: Moving to -0.131669 mm, started at -0.138575 mm, distance = 6.91 um
17-03-17 17:33:51.338 -07 000000610 INF: FPGA: Xmit ZDACW 28763\n [Z Motor]
17-03-17 17:33:51.338 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 17:33:51.348 -07 000000610 INF: FPGA: 'ZDACW 28763' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:51.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:51.348 -07 000000442 INF: FPGA: Recv ZDACR 28763
17-03-17 17:33:51.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:51.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:33:51.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:51.508 -07 000000442 INF: FPGA: Recv ZSGSRD 29781
17-03-17 17:33:51.508 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:33:51.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:33:51.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:51.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:51.518 -07 000000551 INF: FPGA: Recv ZSGSRD 29789
17-03-17 17:33:51.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:51.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:51.528 -07 000000551 INF: FPGA: Recv ZSGSRD 29785
17-03-17 17:33:51.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:51.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:51.538 -07 000000551 INF: FPGA: Recv ZSGSRD 29785
17-03-17 17:33:51.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:51.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:51.548 -07 000000551 INF: FPGA: Recv ZSGSRD 29791
17-03-17 17:33:51.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:51.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:51.558 -07 000000551 INF: FPGA: Recv ZSGSRD 29780
17-03-17 17:33:51.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:51.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:51.568 -07 000000551 INF: FPGA: Recv ZSGSRD 29792
17-03-17 17:33:51.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:51.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:51.578 -07 000000442 INF: FPGA: Recv ZSGSRD 29786
17-03-17 17:33:51.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:51.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:51.588 -07 000000442 INF: FPGA: Recv ZSGSRD 29780
17-03-17 17:33:51.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:51.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:51.598 -07 000000623 INF: FPGA: Recv ZSGSRD 29777
17-03-17 17:33:51.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:51.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:51.608 -07 000000438 INF: FPGA: Recv ZPIEZORD 25288
17-03-17 17:33:51.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:51.618 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -9.9 V.
17-03-17 17:33:51.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29785 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29785 (-130.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29777 (-130.8 uncal um), Max = 29792 (-130.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:33:51.618 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29785, posNoise = 7, negNoise = 8
17-03-17 17:33:51.618 -07 000000610 INF: Z Motor: After move to -0.131669, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:51.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:33:51.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:51.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:51.618 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:51.618 -07 000000442 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:51.618 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:33:51.618 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:33:51.618 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:33:51.618 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:33:51.618 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:33:51.618 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:51.618 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:51.618 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:33:51.628 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:33:51.628 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:33:51.628 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:33:51.628 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:33:51.638 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:33:51.638 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:33:51.638 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:33:51.638 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:33:51.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28940 150\n [Camera]
17-03-17 17:33:51.838 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:33:52.228 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:33:52.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:33:52.228 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:52.228 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:33:52.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:33:52.228 -07 000000442 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:52.348 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:52.348 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:33:52.348 -07 000000442 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:52.348 -07 000000442 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 17:33:52.418 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28940 775
17-03-17 17:33:52.568 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:33:52.718 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:33:52.718 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:33:52.718 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:52.718 -07 000000442 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:33:52.718 -07 000000442 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:33:52.718 -07 000000442 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:52.728 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:33:52.728 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 494 ms.
17-03-17 17:33:52.728 -07 000000442 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:52.728 -07 000000442 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 500 ms.
17-03-17 17:33:52.758 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:33:52.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:33:52.758 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:52.768 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:52.768 -07 000000631 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 17:33:52.768 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:33:52.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 17:33:52.768 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:52.768 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:52.768 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1137380112, 0x0, 418435064) start.
17-03-17 17:33:52.948 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:33:52.948 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:33:52.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28940 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 17:33:52.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:33:52.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2255859375, Z-Position -0.131668510653485. ------
17-03-17 17:33:52.958 -07 000000442 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:52.958 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13816 mm
17-03-17 17:33:52.958 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:33:52.958 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:52.958 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 17:33:52.968 -07 000000478 INF: Y Motor: Moving to 64.0626 mm, started at 63.2256 mm, delta = 0.8370 mm
17-03-17 17:33:52.968 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:52.968 -07 000000442 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:52.968 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 30182, sync = True, waitForSettling = False)
17-03-17 17:33:52.968 -07 000000475 INF: Z Motor: Moving to -0.138164 mm, started at -0.131669 mm, distance = -6.50 um
17-03-17 17:33:52.968 -07 000000476 INF: FPGA: Recv YRDPOS 129486
17-03-17 17:33:52.978 -07 000000475 INF: FPGA: Xmit ZDACW 30182\n [Z Motor]
17-03-17 17:33:52.978 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:52.978 -07 000000478 INF: Y Motor: Encoder = 129486 = motor step 101160.9 = 63.2256 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:52.978 -07 000000478 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:33:52.978 -07 000000478 INF: Y Motor: Moving 1339 steps-15
17-03-17 17:33:52.978 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:33:52.988 -07 000000475 INF: FPGA: 'ZDACW 30182' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 17:33:52.988 -07 000000442 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:33:52.998 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:33:53.008 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:53.008 -07 000000631 INF: FPGA: Recv ZDACR 30182
17-03-17 17:33:53.018 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:33:53.018 -07 000000475 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 17:33:53.148 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 17:33:53.148 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:33:53.148 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:53.148 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1137380112, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 17:33:53.148 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 17:33:53.148 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:53.148 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:33:53.148 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:33:53.148 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:33:53.158 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:33:53.188 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:33:53.188 -07 000000442 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 17:33:53.378 -07 000000442 INF: FPGA: Recv YMVTILE
17-03-17 17:33:53.378 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 17:33:53.408 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:53.408 -07 000000476 INF: FPGA: Recv YRDPOS 131190
17-03-17 17:33:53.418 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:33:53.418 -07 000000478 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:53.418 -07 000000478 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 17:33:53.418 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.837 mm, average velocity = 2.087 mm/sec
17-03-17 17:33:53.928 -07 000000442 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.099674,
17-03-17 17:33:54.368 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:54.368 -07 000000442 INF: FPGA: Recv YRDPOS 131191
17-03-17 17:33:54.378 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:54.378 -07 000000478 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:54.388 -07 000000478 INF: Y Motor: After move to 64.062607, error = -0.004501, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:33:54.388 -07 000000478 INF: Y Motor: Position error after settling (table move) = -9 encoder counts (-0.004 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:33:54.388 -07 000000478 INF: Y Motor: Moved to 64.0581 after 1424 ms (table move)
17-03-17 17:33:54.388 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138164 mm (DAC = 30182)
17-03-17 17:33:54.388 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:54.398 -07 000000631 INF: FPGA: Recv ZSGSRD 30799
17-03-17 17:33:54.398 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:33:54.398 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:54.398 -07 000000438 INF: FPGA: Recv ZSGSRD 30793
17-03-17 17:33:54.408 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:54.408 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:54.408 -07 000000382 INF: FPGA: Recv ZSGSRD 30801
17-03-17 17:33:54.418 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:54.418 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:54.418 -07 000000486 INF: FPGA: Recv ZSGSRD 30794
17-03-17 17:33:54.428 -07 000000561 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:54.428 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:54.428 -07 000000476 INF: FPGA: Recv ZSGSRD 30792
17-03-17 17:33:54.438 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:54.438 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:54.438 -07 000000627 INF: FPGA: Recv ZSGSRD 30796
17-03-17 17:33:54.448 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:54.448 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:54.448 -07 000000486 INF: FPGA: Recv ZSGSRD 30794
17-03-17 17:33:54.458 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:54.458 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:54.458 -07 000000478 INF: FPGA: Recv ZSGSRD 30792
17-03-17 17:33:54.468 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:54.468 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:54.468 -07 000000486 INF: FPGA: Recv ZSGSRD 30804
17-03-17 17:33:54.478 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:54.478 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:54.478 -07 000000476 INF: FPGA: Recv ZSGSRD 30805
17-03-17 17:33:54.488 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:54.488 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:54.488 -07 000000486 INF: FPGA: Recv ZPIEZORD 26631
17-03-17 17:33:54.498 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:54.498 -07 000000561 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.605 V. Piezo Error = -9.2 V.
17-03-17 17:33:54.498 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30797 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30795 (-137.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30792 (-137.3 uncal um), Max = 30805 (-137.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:33:54.498 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30797, posNoise = 8, negNoise = 5
17-03-17 17:33:54.498 -07 000000561 INF: Z Motor: After move to -0.138164, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:54.498 -07 000000561 INF: Z Motor: Settle wait time = 1426 ms, measure time = 103 ms (allowed 150 ms), total time = 1529 ms
17-03-17 17:33:54.498 -07 000000561 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 17:33:54.548 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 17:33:54.548 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:33:54.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:54.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:54.548 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:54.548 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:54.548 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:33:54.548 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:54.548 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:33:54.548 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:33:54.558 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:33:54.558 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:33:54.568 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:33:54.568 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:33:54.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:33:54.618 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:33:54.808 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:33:54.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:33:54.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:33:54.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1051332656, 0x0, 559484976) start.
17-03-17 17:33:54.848 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:33:54.848 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 17:33:54.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 17:33:54.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1051332656, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:33:54.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:54.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:33:54.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:33:54.958 -07 000000627 INF: Autofocus start
17-03-17 17:33:54.958 -07 000000627 INF: MeasureProfile start
17-03-17 17:33:54.958 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:54.958 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:54.968 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:54.968 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:33:54.968 -07 000000627 INF: MeasureProfile done
17-03-17 17:33:54.968 -07 000000627 INF: X=-64  Z correction [um]=-0.3149434
17-03-17 17:33:54.968 -07 000000627 INF: Autofocus finished
17-03-17 17:33:55.168 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:33:55.168 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:33:55.168 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05810546875, Z-position -0.138169813340947. ----------
17-03-17 17:33:55.168 -07 000000610 INF: Cycle	2	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:33:55.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28626, sync = True, waitForSettling = True)
17-03-17 17:33:55.178 -07 000000610 INF: Z Motor: Moving to -0.131041 mm, started at -0.138170 mm, distance = 7.13 um
17-03-17 17:33:55.178 -07 000000610 INF: FPGA: Xmit ZDACW 28626\n [Z Motor]
17-03-17 17:33:55.178 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:33:55.188 -07 000000610 INF: FPGA: 'ZDACW 28626' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:55.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:55.188 -07 000000486 INF: FPGA: Recv ZDACR 28626
17-03-17 17:33:55.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:55.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:33:55.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:55.348 -07 000000627 INF: FPGA: Recv ZSGSRD 29689
17-03-17 17:33:55.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:33:55.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:55.358 -07 000000476 INF: FPGA: Recv ZSGSRD 29685
17-03-17 17:33:55.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:55.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:55.368 -07 000000627 INF: FPGA: Recv ZSGSRD 29684
17-03-17 17:33:55.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:55.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:55.378 -07 000000478 INF: FPGA: Recv ZSGSRD 29685
17-03-17 17:33:55.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:55.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:55.388 -07 000000476 INF: FPGA: Recv ZSGSRD 29687
17-03-17 17:33:55.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:55.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:55.398 -07 000000478 INF: FPGA: Recv ZSGSRD 29689
17-03-17 17:33:55.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:55.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:55.408 -07 000000561 INF: FPGA: Recv ZSGSRD 29683
17-03-17 17:33:55.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:55.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:55.418 -07 000000561 INF: FPGA: Recv ZSGSRD 29686
17-03-17 17:33:55.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:55.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:55.428 -07 000000627 INF: FPGA: Recv ZSGSRD 29694
17-03-17 17:33:55.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:55.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:55.438 -07 000000627 INF: FPGA: Recv ZSGSRD 29684
17-03-17 17:33:55.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:55.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:55.448 -07 000000561 INF: FPGA: Recv ZPIEZORD 25204
17-03-17 17:33:55.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:55.458 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.368 V. Piezo Error = -9.8 V.
17-03-17 17:33:55.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29687 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29686 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29683 (-130.2 uncal um), Max = 29694 (-130.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:33:55.458 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29687, posNoise = 7, negNoise = 4
17-03-17 17:33:55.458 -07 000000610 INF: Z Motor: After move to -0.131041, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:55.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:33:55.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:55.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:55.458 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:55.458 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:55.458 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:33:55.458 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:55.458 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:33:55.458 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:33:55.458 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:55.458 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:33:55.458 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 17:33:55.458 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:33:55.468 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:33:55.468 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:33:55.468 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:33:55.468 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:33:55.468 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:33:55.468 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:33:55.478 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:33:55.478 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:33:55.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28802 150\n [Camera]
17-03-17 17:33:55.678 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:33:56.068 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:33:56.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:33:56.068 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:56.068 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:56.068 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 17:33:56.068 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:33:56.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:33:56.068 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:56.068 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:56.068 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 17:33:56.258 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28802 775
17-03-17 17:33:56.408 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:33:56.438 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:33:56.438 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:33:56.438 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:56.448 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:56.448 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:33:56.448 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 17:33:56.448 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:56.448 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:56.448 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:33:56.448 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 17:33:56.508 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:33:56.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:33:56.598 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:33:56.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:33:56.598 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:56.598 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:56.598 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:33:56.598 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:33:56.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:33:56.598 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:56.598 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:56.598 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:33:56.788 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:33:56.788 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:33:56.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28802 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-17 17:33:56.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:33:56.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05810546875, Z-Position -0.131038937863593. ------
17-03-17 17:33:56.798 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:56.798 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13753 mm
17-03-17 17:33:56.798 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:33:56.798 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30044, sync = True, waitForSettling = False)
17-03-17 17:33:56.798 -07 000000486 INF: Z Motor: Moving to -0.137533 mm, started at -0.131039 mm, distance = -6.49 um
17-03-17 17:33:56.798 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 17:33:56.798 -07 000000459 INF: Y Motor: Moving to 64.8926 mm, started at 64.0581 mm, delta = 0.8345 mm
17-03-17 17:33:56.798 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:56.808 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:56.808 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:56.808 -07 000000618 INF: FPGA: Recv YRDPOS 131191
17-03-17 17:33:56.818 -07 000000486 INF: FPGA: Xmit ZDACW 30044\n [Z Motor]
17-03-17 17:33:56.818 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:33:56.818 -07 000000459 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:56.818 -07 000000459 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:33:56.818 -07 000000459 INF: Y Motor: Moving 1335 steps-10
17-03-17 17:33:56.818 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 17:33:56.828 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:33:56.828 -07 000000486 INF: FPGA: 'ZDACW 30044' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:33:56.838 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:33:56.848 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:56.848 -07 000000618 INF: FPGA: Recv ZDACR 30044
17-03-17 17:33:56.858 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:33:56.858 -07 000000486 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 17:33:56.978 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:33:56.978 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:33:56.978 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:56.978 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:33:56.978 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:33:56.978 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:56.978 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:33:56.988 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:33:56.988 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:33:56.988 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:33:57.028 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:33:57.028 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:33:57.218 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 17:33:57.218 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 17:33:57.238 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:57.248 -07 000000486 INF: FPGA: Recv YRDPOS 132874
17-03-17 17:33:57.248 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:33:57.248 -07 000000459 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:57.248 -07 000000459 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 17:33:57.248 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.835 mm, average velocity = 2.086 mm/sec
17-03-17 17:33:58.198 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:33:58.198 -07 000000438 INF: FPGA: Recv YRDPOS 132874
17-03-17 17:33:58.208 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:58.208 -07 000000459 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:33:58.228 -07 000000459 INF: Y Motor: After move to 64.892609, error = -0.012726, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:33:58.228 -07 000000459 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:33:58.228 -07 000000459 INF: Y Motor: Moved to 64.8799 after 1425 ms (table move)
17-03-17 17:33:58.228 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137533 mm (DAC = 30044)
17-03-17 17:33:58.228 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:58.228 -07 000000409 INF: FPGA: Recv ZSGSRD 30709
17-03-17 17:33:58.238 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:33:58.238 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:58.238 -07 000000409 INF: FPGA: Recv ZSGSRD 30701
17-03-17 17:33:58.248 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:58.248 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:58.248 -07 000000409 INF: FPGA: Recv ZSGSRD 30708
17-03-17 17:33:58.258 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:58.258 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:58.258 -07 000000618 INF: FPGA: Recv ZSGSRD 30707
17-03-17 17:33:58.268 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:58.268 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:58.268 -07 000000618 INF: FPGA: Recv ZSGSRD 30698
17-03-17 17:33:58.278 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:58.278 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:58.278 -07 000000618 INF: FPGA: Recv ZSGSRD 30701
17-03-17 17:33:58.288 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:58.288 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:58.288 -07 000000626 INF: FPGA: Recv ZSGSRD 30696
17-03-17 17:33:58.298 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:58.298 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:58.298 -07 000000618 INF: FPGA: Recv ZSGSRD 30692
17-03-17 17:33:58.308 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:58.308 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:58.308 -07 000000618 INF: FPGA: Recv ZSGSRD 30695
17-03-17 17:33:58.318 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:58.318 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:58.318 -07 000000626 INF: FPGA: Recv ZSGSRD 30703
17-03-17 17:33:58.328 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:58.328 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:58.328 -07 000000626 INF: FPGA: Recv ZPIEZORD 26533
17-03-17 17:33:58.338 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:58.338 -07 000000627 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.584 V. Piezo Error = -9.2 V.
17-03-17 17:33:58.338 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30701 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30701 (-136.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30692 (-136.7 uncal um), Max = 30709 (-136.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:33:58.338 -07 000000627 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30701, posNoise = 8, negNoise = 9
17-03-17 17:33:58.338 -07 000000627 INF: Z Motor: After move to -0.137533, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:58.338 -07 000000627 INF: Z Motor: Settle wait time = 1429 ms, measure time = 107 ms (allowed 150 ms), total time = 1536 ms
17-03-17 17:33:58.338 -07 000000627 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:33:58.388 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 17:33:58.388 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:33:58.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:58.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:58.388 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:58.388 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:58.388 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:33:58.388 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:58.388 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:58.388 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:33:58.398 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:33:58.398 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:33:58.398 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:33:58.398 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:33:58.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:33:58.448 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:33:58.648 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:33:58.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:33:58.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:33:58.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1074819344, 0x0, 559484976) start.
17-03-17 17:33:58.688 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:33:58.688 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 17:33:58.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 17:33:58.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1074819344, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 17:33:58.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:33:58.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:33:58.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 17:33:58.788 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:33:58.788 -07 000000626 INF: Autofocus start
17-03-17 17:33:58.788 -07 000000626 INF: MeasureProfile start
17-03-17 17:33:58.788 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:33:58.798 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:33:58.798 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:33:58.798 -07 000000626 INF: MeasureProfile done
17-03-17 17:33:58.798 -07 000000626 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:33:58.798 -07 000000626 INF: Autofocus finished
17-03-17 17:33:58.998 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:33:58.998 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 17:33:59.008 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8798828125, Z-position -0.137553088975338. ----------
17-03-17 17:33:59.008 -07 000000610 INF: Cycle	2	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:33:59.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28552, sync = True, waitForSettling = True)
17-03-17 17:33:59.008 -07 000000610 INF: Z Motor: Moving to -0.130703 mm, started at -0.137553 mm, distance = 6.85 um
17-03-17 17:33:59.018 -07 000000610 INF: FPGA: Xmit ZDACW 28552\n [Z Motor]
17-03-17 17:33:59.018 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:33:59.028 -07 000000610 INF: FPGA: 'ZDACW 28552' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 17:33:59.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:33:59.028 -07 000000561 INF: FPGA: Recv ZDACR 28552
17-03-17 17:33:59.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:59.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:33:59.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:59.188 -07 000000459 INF: FPGA: Recv ZSGSRD 29637
17-03-17 17:33:59.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:59.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:59.198 -07 000000618 INF: FPGA: Recv ZSGSRD 29639
17-03-17 17:33:59.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:59.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:59.208 -07 000000438 INF: FPGA: Recv ZSGSRD 29636
17-03-17 17:33:59.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:59.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:59.218 -07 000000608 INF: FPGA: Recv ZSGSRD 29633
17-03-17 17:33:59.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:59.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:59.228 -07 000000608 INF: FPGA: Recv ZSGSRD 29632
17-03-17 17:33:59.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:59.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:59.238 -07 000000486 INF: FPGA: Recv ZSGSRD 29637
17-03-17 17:33:59.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:59.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:59.248 -07 000000486 INF: FPGA: Recv ZSGSRD 29639
17-03-17 17:33:59.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:59.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:59.258 -07 000000561 INF: FPGA: Recv ZSGSRD 29641
17-03-17 17:33:59.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:59.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:59.268 -07 000000608 INF: FPGA: Recv ZSGSRD 29633
17-03-17 17:33:59.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:59.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:33:59.278 -07 000000486 INF: FPGA: Recv ZSGSRD 29637
17-03-17 17:33:59.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:59.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:33:59.288 -07 000000561 INF: FPGA: Recv ZPIEZORD 25175
17-03-17 17:33:59.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:33:59.298 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.357 V. Piezo Error = -9.8 V.
17-03-17 17:33:59.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29636 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29637 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29632 (-129.9 uncal um), Max = 29641 (-130.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:33:59.298 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29636, posNoise = 5, negNoise = 4
17-03-17 17:33:59.298 -07 000000610 INF: Z Motor: After move to -0.130703, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:33:59.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-17 17:33:59.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:33:59.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:33:59.298 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:33:59.298 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:33:59.298 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:33:59.298 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:33:59.298 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:33:59.298 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:33:59.298 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:33:59.298 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:33:59.298 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:33:59.298 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:33:59.308 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:33:59.308 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:33:59.308 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:33:59.308 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.076552,
17-03-17 17:33:59.308 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:33:59.318 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:33:59.318 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:33:59.318 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:33:59.318 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:33:59.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28728 150\n [Camera]
17-03-17 17:33:59.538 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:33:59.938 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:33:59.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:33:59.938 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:33:59.938 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:33:59.938 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 17:33:59.938 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:33:59.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:33:59.938 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:33:59.938 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:33:59.938 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 17:34:00.128 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28728 775
17-03-17 17:34:00.278 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:34:00.308 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:34:00.308 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 17:34:00.308 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:00.318 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:34:00.318 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:34:00.318 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:00.318 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:00.318 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:34:00.318 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:00.328 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:34:00.468 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:34:00.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:34:00.468 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:00.468 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:00.468 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 17:34:00.468 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:34:00.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:34:00.468 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:00.468 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:00.468 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 17:34:00.658 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:34:00.658 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:34:00.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28728 150' command took 2 ms to send, 1303 ms to get response, and 1336 ms overall
17-03-17 17:34:00.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:34:00.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8798828125, Z-Position -0.130711303044363. ------
17-03-17 17:34:00.778 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:00.778 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13727 mm
17-03-17 17:34:00.778 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:34:00.778 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 17:34:00.778 -07 000000459 INF: Y Motor: Moving to 65.7226 mm, started at 64.8799 mm, delta = 0.8427 mm
17-03-17 17:34:00.778 -07 000000631 INF: Z Motor: Entering MoveAbsStepped (DAC = 29987, sync = True, waitForSettling = False)
17-03-17 17:34:00.778 -07 000000631 INF: Z Motor: Moving to -0.137272 mm, started at -0.130711 mm, distance = -6.56 um
17-03-17 17:34:00.778 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:00.788 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:34:00.788 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:00.788 -07 000000623 INF: FPGA: Recv YRDPOS 132874
17-03-17 17:34:00.798 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:34:00.798 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:34:00.798 -07 000000459 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:00.798 -07 000000459 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:34:00.798 -07 000000459 INF: Y Motor: Moving 1348 steps-26
17-03-17 17:34:00.808 -07 000000631 INF: FPGA: Xmit ZDACW 29987\n [Z Motor]
17-03-17 17:34:00.808 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 17:34:00.818 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:34:00.818 -07 000000631 INF: FPGA: 'ZDACW 29987' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 17:34:00.828 -07 000000631 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:00.828 -07 000000382 INF: FPGA: Recv ZDACR 29987
17-03-17 17:34:00.838 -07 000000631 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:34:00.838 -07 000000631 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 17:34:00.858 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 17:34:00.858 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 17:34:00.858 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:00.858 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 17:34:00.858 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:34:00.858 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:00.858 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:34:00.868 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 17:34:00.868 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 17:34:00.868 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 17:34:00.998 -07 000000631 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:34:00.998 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 17:34:01.188 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 17:34:01.188 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:34:01.218 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:01.228 -07 000000438 INF: FPGA: Recv YRDPOS 134585
17-03-17 17:34:01.228 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:34:01.228 -07 000000459 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:01.228 -07 000000459 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 17:34:01.228 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.123 mm/sec
17-03-17 17:34:01.508 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:34:01.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:34:02.178 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:02.178 -07 000000623 INF: FPGA: Recv YRDPOS 134585
17-03-17 17:34:02.188 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:02.188 -07 000000459 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:02.198 -07 000000459 INF: Y Motor: After move to 65.722610, error = -0.007278, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:34:02.198 -07 000000459 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:34:02.198 -07 000000459 INF: Y Motor: Moved to 65.7153 after 1421 ms (table move)
17-03-17 17:34:02.208 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137272 mm (DAC = 29987)
17-03-17 17:34:02.208 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:02.208 -07 000000551 INF: FPGA: Recv ZSGSRD 30657
17-03-17 17:34:02.218 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:34:02.218 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:02.218 -07 000000623 INF: FPGA: Recv ZSGSRD 30651
17-03-17 17:34:02.228 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:02.228 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:02.228 -07 000000561 INF: FPGA: Recv ZSGSRD 30654
17-03-17 17:34:02.238 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:02.238 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:02.238 -07 000000623 INF: FPGA: Recv ZSGSRD 30659
17-03-17 17:34:02.248 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:02.248 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:02.248 -07 000000561 INF: FPGA: Recv ZSGSRD 30663
17-03-17 17:34:02.258 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:02.258 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:02.258 -07 000000561 INF: FPGA: Recv ZSGSRD 30657
17-03-17 17:34:02.268 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:02.268 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:02.268 -07 000000623 INF: FPGA: Recv ZSGSRD 30661
17-03-17 17:34:02.278 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:02.278 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:02.278 -07 000000486 INF: FPGA: Recv ZSGSRD 30663
17-03-17 17:34:02.288 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:02.288 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:02.288 -07 000000438 INF: FPGA: Recv ZSGSRD 30656
17-03-17 17:34:02.298 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:02.298 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:02.298 -07 000000382 INF: FPGA: Recv ZSGSRD 30651
17-03-17 17:34:02.308 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:02.308 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:02.308 -07 000000438 INF: FPGA: Recv ZPIEZORD 26519
17-03-17 17:34:02.318 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:02.318 -07 000000608 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.576 V. Piezo Error = -9.1 V.
17-03-17 17:34:02.318 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30657 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30657 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30651 (-136.4 uncal um), Max = 30663 (-136.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:34:02.318 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30657, posNoise = 6, negNoise = 6
17-03-17 17:34:02.318 -07 000000608 INF: Z Motor: After move to -0.137272, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:02.318 -07 000000608 INF: Z Motor: Settle wait time = 1424 ms, measure time = 108 ms (allowed 150 ms), total time = 1532 ms
17-03-17 17:34:02.318 -07 000000608 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:34:02.368 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 17:34:02.368 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:34:02.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:02.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:02.378 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:02.378 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:34:02.378 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:02.378 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:02.378 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:34:02.378 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:34:02.378 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:34:02.378 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:34:02.388 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 17:34:02.388 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 17:34:02.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:34:02.438 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:34:02.638 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:34:02.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:34:02.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:34:02.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:34:02.678 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:34:02.678 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:34:02.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 17:34:02.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:34:02.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:02.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:34:02.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:34:02.778 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:02.778 -07 000000631 INF: Autofocus start
17-03-17 17:34:02.778 -07 000000631 INF: MeasureProfile start
17-03-17 17:34:02.778 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:02.788 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:34:02.788 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:34:02.788 -07 000000631 INF: MeasureProfile done
17-03-17 17:34:02.788 -07 000000631 INF: X=32  Z correction [um]=0.1299841
17-03-17 17:34:02.788 -07 000000631 INF: Autofocus finished
17-03-17 17:34:02.988 -07 000000442 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:34:02.988 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:34:02.988 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71533203125, Z-position -0.137270423641101. ----------
17-03-17 17:34:02.988 -07 000000610 INF: Cycle	2	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:34:02.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28528, sync = True, waitForSettling = True)
17-03-17 17:34:02.998 -07 000000610 INF: Z Motor: Moving to -0.130593 mm, started at -0.137270 mm, distance = 6.68 um
17-03-17 17:34:02.998 -07 000000610 INF: FPGA: Xmit ZDACW 28528\n [Z Motor]
17-03-17 17:34:02.998 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 17:34:03.008 -07 000000610 INF: FPGA: 'ZDACW 28528' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:03.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:03.008 -07 000000608 INF: FPGA: Recv ZDACR 28528
17-03-17 17:34:03.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:03.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:34:03.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:03.168 -07 000000631 INF: FPGA: Recv ZSGSRD 29620
17-03-17 17:34:03.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:03.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:03.178 -07 000000631 INF: FPGA: Recv ZSGSRD 29621
17-03-17 17:34:03.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:03.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:03.188 -07 000000631 INF: FPGA: Recv ZSGSRD 29619
17-03-17 17:34:03.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:03.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:03.198 -07 000000631 INF: FPGA: Recv ZSGSRD 29621
17-03-17 17:34:03.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:03.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:03.208 -07 000000631 INF: FPGA: Recv ZSGSRD 29620
17-03-17 17:34:03.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:03.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:03.218 -07 000000631 INF: FPGA: Recv ZSGSRD 29613
17-03-17 17:34:03.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:03.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:03.228 -07 000000631 INF: FPGA: Recv ZSGSRD 29621
17-03-17 17:34:03.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:03.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:03.238 -07 000000631 INF: FPGA: Recv ZSGSRD 29619
17-03-17 17:34:03.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:03.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:03.248 -07 000000631 INF: FPGA: Recv ZSGSRD 29623
17-03-17 17:34:03.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:03.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:03.258 -07 000000631 INF: FPGA: Recv ZSGSRD 29614
17-03-17 17:34:03.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:03.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:03.268 -07 000000438 INF: FPGA: Recv ZPIEZORD 25189
17-03-17 17:34:03.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:03.278 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.353 V. Piezo Error = -9.7 V.
17-03-17 17:34:03.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29619 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29620 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29613 (-129.8 uncal um), Max = 29623 (-129.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:34:03.278 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29619, posNoise = 4, negNoise = 6
17-03-17 17:34:03.278 -07 000000610 INF: Z Motor: After move to -0.130593, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:03.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:34:03.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:03.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:03.278 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:03.278 -07 000000442 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:03.278 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:34:03.278 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:34:03.278 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:34:03.278 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:03.278 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:34:03.278 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:34:03.278 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:34:03.278 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:34:03.278 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:34:03.278 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:34:03.288 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:34:03.288 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:34:03.288 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:34:03.288 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:34:03.298 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:34:03.298 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:34:03.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28705 150\n [Camera]
17-03-17 17:34:03.498 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:34:03.888 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:34:03.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:34:03.888 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:03.888 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:34:03.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:34:03.888 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:03.898 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:03.898 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:34:03.898 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:03.898 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:34:04.078 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28705 775
17-03-17 17:34:04.228 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:34:04.268 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:34:04.268 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:34:04.268 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:04.268 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:34:04.268 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:34:04.268 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:04.268 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:04.268 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:34:04.268 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:04.278 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:34:04.418 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:34:04.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:34:04.418 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:04.418 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:34:04.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:34:04.418 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:04.538 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:04.538 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 17:34:04.548 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:04.548 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:34:04.608 -07 000000631 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:34:04.608 -07 000000442 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:34:04.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28705 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 17:34:04.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:34:04.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71533203125, Z-Position -0.130602091437953. ------
17-03-17 17:34:04.618 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:04.618 -07 000000631 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13693 mm
17-03-17 17:34:04.618 -07 000000631 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:34:04.618 -07 000000442 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 17:34:04.618 -07 000000442 INF: Y Motor: Moving to 66.5526 mm, started at 65.7153 mm, delta = 0.8373 mm
17-03-17 17:34:04.628 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:04.938 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 17:34:04.938 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:34:04.938 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:04.948 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:34:04.948 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 17:34:04.948 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 17:34:04.948 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:04.948 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-17 17:34:04.948 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:34:04.948 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 532 ms.
17-03-17 17:34:04.968 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29913, sync = True, waitForSettling = False)
17-03-17 17:34:04.968 -07 000000623 INF: Z Motor: Moving to -0.136933 mm, started at -0.130602 mm, distance = -6.33 um
17-03-17 17:34:04.968 -07 000000623 INF: FPGA: Xmit ZDACW 29913\n [Z Motor]
17-03-17 17:34:04.968 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:04.968 -07 000000486 INF: FPGA: Recv YRDPOS 134585
17-03-17 17:34:04.968 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 341 ms to get response, and 348 ms overall
17-03-17 17:34:04.968 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 331 ms to get response, and 345 ms overall
17-03-17 17:34:04.968 -07 000000442 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:04.968 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.071149,
17-03-17 17:34:04.968 -07 000000442 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:34:04.968 -07 000000442 INF: Y Motor: Moving 1340 steps-15
17-03-17 17:34:04.968 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:34:04.978 -07 000000623 INF: FPGA: 'ZDACW 29913' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:34:04.978 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:04.978 -07 000000486 INF: FPGA: Recv ZDACR 29913
17-03-17 17:34:04.988 -07 000000442 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:34:04.988 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:04.988 -07 000000623 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-17 17:34:05.008 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:34:05.208 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:34:05.208 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 241 ms overall
17-03-17 17:34:05.358 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 17:34:05.358 -07 000000442 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 17:34:05.398 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:05.398 -07 000000623 INF: FPGA: Recv YRDPOS 136274
17-03-17 17:34:05.408 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:34:05.408 -07 000000442 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:05.408 -07 000000442 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 17:34:05.408 -07 000000442 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.837 mm, average velocity = 2.114 mm/sec
17-03-17 17:34:06.358 -07 000000442 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:06.358 -07 000000382 INF: FPGA: Recv YRDPOS 136275
17-03-17 17:34:06.368 -07 000000442 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:06.368 -07 000000442 INF: Y Motor: Encoder = 136275 = motor step 106464.8 = 66.5405 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:06.378 -07 000000442 INF: Y Motor: After move to 66.552605, error = -0.012077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:34:06.378 -07 000000442 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:34:06.378 -07 000000442 INF: Y Motor: Moved to 66.5405 after 1762 ms (table move)
17-03-17 17:34:06.388 -07 000000631 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136933 mm (DAC = 29913)
17-03-17 17:34:06.388 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:06.388 -07 000000442 INF: FPGA: Recv ZSGSRD 30610
17-03-17 17:34:06.398 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:34:06.398 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:06.398 -07 000000486 INF: FPGA: Recv ZSGSRD 30600
17-03-17 17:34:06.408 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:06.408 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:06.408 -07 000000382 INF: FPGA: Recv ZSGSRD 30604
17-03-17 17:34:06.418 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:06.418 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:06.418 -07 000000382 INF: FPGA: Recv ZSGSRD 30603
17-03-17 17:34:06.428 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:06.428 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:06.428 -07 000000442 INF: FPGA: Recv ZSGSRD 30610
17-03-17 17:34:06.438 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:06.438 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:06.438 -07 000000626 INF: FPGA: Recv ZSGSRD 30615
17-03-17 17:34:06.448 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:06.448 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:06.448 -07 000000626 INF: FPGA: Recv ZSGSRD 30606
17-03-17 17:34:06.458 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:06.458 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:06.458 -07 000000626 INF: FPGA: Recv ZSGSRD 30600
17-03-17 17:34:06.468 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:06.468 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:06.468 -07 000000626 INF: FPGA: Recv ZSGSRD 30599
17-03-17 17:34:06.478 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:06.478 -07 000000631 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:06.478 -07 000000442 INF: FPGA: Recv ZSGSRD 30602
17-03-17 17:34:06.488 -07 000000631 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:06.488 -07 000000631 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:06.488 -07 000000442 INF: FPGA: Recv ZPIEZORD 26454
17-03-17 17:34:06.498 -07 000000631 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:06.498 -07 000000631 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.564 V. Piezo Error = -9.1 V.
17-03-17 17:34:06.498 -07 000000631 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30605 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30604 (-136.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30599 (-136.1 uncal um), Max = 30615 (-136.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:34:06.498 -07 000000631 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30605, posNoise = 10, negNoise = 6
17-03-17 17:34:06.498 -07 000000631 INF: Z Motor: After move to -0.136933, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:06.498 -07 000000631 INF: Z Motor: Settle wait time = 1420 ms, measure time = 109 ms (allowed 150 ms), total time = 1529 ms
17-03-17 17:34:06.498 -07 000000631 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:34:06.508 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:34:06.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:34:06.548 -07 000000631 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1926 ms
17-03-17 17:34:06.548 -07 000000631 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:34:06.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:06.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:06.548 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:06.548 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:06.548 -07 000000442 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:34:06.548 -07 000000442 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:06.548 -07 000000442 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:34:06.548 -07 000000442 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:34:06.558 -07 000000442 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:34:06.558 -07 000000442 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:34:06.568 -07 000000442 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:34:06.568 -07 000000442 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:34:06.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:34:06.608 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:34:06.808 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:34:06.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:34:06.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:34:06.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 17:34:06.848 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:34:06.848 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 17:34:06.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 17:34:06.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:34:06.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:06.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:34:06.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:34:06.948 -07 000000442 INF: Autofocus start
17-03-17 17:34:06.948 -07 000000442 INF: MeasureProfile start
17-03-17 17:34:06.948 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:06.948 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:06.958 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:34:06.958 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:34:06.958 -07 000000442 INF: MeasureProfile done
17-03-17 17:34:06.958 -07 000000442 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 17:34:06.958 -07 000000442 INF: Autofocus finished
17-03-17 17:34:07.158 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:34:07.158 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:34:07.158 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.54052734375, Z-position -0.136936364609729. ----------
17-03-17 17:34:07.158 -07 000000610 INF: Cycle	2	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:34:07.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28408, sync = True, waitForSettling = True)
17-03-17 17:34:07.158 -07 000000610 INF: Z Motor: Moving to -0.130043 mm, started at -0.136936 mm, distance = 6.89 um
17-03-17 17:34:07.168 -07 000000610 INF: FPGA: Xmit ZDACW 28408\n [Z Motor]
17-03-17 17:34:07.168 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:34:07.178 -07 000000610 INF: FPGA: 'ZDACW 28408' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:07.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:07.178 -07 000000631 INF: FPGA: Recv ZDACR 28408
17-03-17 17:34:07.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:07.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:34:07.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:07.338 -07 000000442 INF: FPGA: Recv ZSGSRD 29529
17-03-17 17:34:07.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:07.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:07.348 -07 000000626 INF: FPGA: Recv ZSGSRD 29538
17-03-17 17:34:07.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:07.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:07.358 -07 000000631 INF: FPGA: Recv ZSGSRD 29532
17-03-17 17:34:07.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:07.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:07.368 -07 000000442 INF: FPGA: Recv ZSGSRD 29535
17-03-17 17:34:07.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:07.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:07.378 -07 000000618 INF: FPGA: Recv ZSGSRD 29534
17-03-17 17:34:07.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:07.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:07.388 -07 000000382 INF: FPGA: Recv ZSGSRD 29531
17-03-17 17:34:07.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:07.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:07.398 -07 000000382 INF: FPGA: Recv ZSGSRD 29533
17-03-17 17:34:07.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:07.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:07.408 -07 000000382 INF: FPGA: Recv ZSGSRD 29534
17-03-17 17:34:07.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:07.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:07.418 -07 000000382 INF: FPGA: Recv ZSGSRD 29535
17-03-17 17:34:07.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:07.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:07.428 -07 000000382 INF: FPGA: Recv ZSGSRD 29533
17-03-17 17:34:07.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:07.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:07.438 -07 000000627 INF: FPGA: Recv ZPIEZORD 25057
17-03-17 17:34:07.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:07.448 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.335 V. Piezo Error = -9.8 V.
17-03-17 17:34:07.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29533 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29534 (-129.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29529 (-129.2 uncal um), Max = 29538 (-129.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:34:07.448 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29533, posNoise = 5, negNoise = 4
17-03-17 17:34:07.448 -07 000000610 INF: Z Motor: After move to -0.130043, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:07.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:34:07.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:07.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:07.448 -07 000000631 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:07.448 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:07.448 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:34:07.448 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:34:07.448 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:34:07.448 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:07.448 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:34:07.448 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:34:07.448 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:34:07.448 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:34:07.448 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:34:07.448 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:34:07.458 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:34:07.458 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:34:07.458 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:34:07.458 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:34:07.468 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:34:07.468 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:34:07.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28584 150\n [Camera]
17-03-17 17:34:07.668 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:34:08.058 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:34:08.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:34:08.058 -07 000000631 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:08.058 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:34:08.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:34:08.058 -07 000000631 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:08.058 -07 000000631 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) start.
17-03-17 17:34:08.068 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:08.068 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:08.068 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:34:08.248 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28584 775
17-03-17 17:34:08.398 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:34:08.438 -07 000000631 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:34:08.438 -07 000000631 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:34:08.438 -07 000000631 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:08.438 -07 000000631 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:34:08.438 -07 000000631 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:34:08.438 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:34:08.438 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:34:08.438 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:08.448 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:08.448 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:34:08.588 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:34:08.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:34:08.588 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:08.588 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:08.588 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) start.
17-03-17 17:34:08.588 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:34:08.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:34:08.598 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:08.598 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:08.598 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 17:34:08.778 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:34:08.778 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:34:08.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28584 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:34:08.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:34:08.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.54052734375, Z-Position -0.130049609193761. ------
17-03-17 17:34:08.788 -07 000000442 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13677 mm
17-03-17 17:34:08.788 -07 000000442 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:34:08.788 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:08.788 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 17:34:08.788 -07 000000623 INF: Y Motor: Moving to 67.3826 mm, started at 66.5405 mm, delta = 0.8421 mm
17-03-17 17:34:08.788 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29877, sync = True, waitForSettling = False)
17-03-17 17:34:08.788 -07 000000627 INF: Z Motor: Moving to -0.136768 mm, started at -0.130050 mm, distance = -6.72 um
17-03-17 17:34:08.788 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:08.798 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:34:08.798 -07 000000627 INF: FPGA: Xmit ZDACW 29877\n [Z Motor]
17-03-17 17:34:08.798 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:34:08.808 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:08.808 -07 000000627 INF: FPGA: 'ZDACW 29877' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:34:08.808 -07 000000631 INF: FPGA: Recv YRDPOS 136275
17-03-17 17:34:08.818 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:34:08.818 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:34:08.818 -07 000000623 INF: Y Motor: Encoder = 136275 = motor step 106464.8 = 66.5405 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:08.818 -07 000000623 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:34:08.818 -07 000000623 INF: Y Motor: Moving 1347 steps-26
17-03-17 17:34:08.828 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:08.828 -07 000000631 INF: FPGA: Recv ZDACR 29877
17-03-17 17:34:08.838 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:34:08.838 -07 000000627 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 17:34:08.838 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:34:08.968 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:34:08.968 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:34:08.968 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:08.968 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:34:08.968 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:34:08.978 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:08.978 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:34:08.978 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:34:08.978 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:34:08.988 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:34:09.018 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:34:09.018 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:34:09.218 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 17:34:09.218 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 400 ms overall
17-03-17 17:34:09.248 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:09.248 -07 000000627 INF: FPGA: Recv YRDPOS 137980
17-03-17 17:34:09.258 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:09.258 -07 000000623 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:09.258 -07 000000623 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 17:34:09.258 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.842 mm, average velocity = 2.105 mm/sec
17-03-17 17:34:10.208 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:10.208 -07 000000627 INF: FPGA: Recv YRDPOS 137980
17-03-17 17:34:10.218 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:10.218 -07 000000623 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:10.228 -07 000000623 INF: Y Motor: After move to 67.382607, error = -0.009560, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:34:10.228 -07 000000623 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:34:10.228 -07 000000623 INF: Y Motor: Moved to 67.3730 after 1444 ms (table move)
17-03-17 17:34:10.238 -07 000000442 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136768 mm (DAC = 29877)
17-03-17 17:34:10.238 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:10.238 -07 000000475 INF: FPGA: Recv ZSGSRD 30579
17-03-17 17:34:10.248 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:34:10.248 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:10.248 -07 000000623 INF: FPGA: Recv ZSGSRD 30585
17-03-17 17:34:10.258 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:10.258 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:10.258 -07 000000627 INF: FPGA: Recv ZSGSRD 30579
17-03-17 17:34:10.268 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:10.268 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:10.268 -07 000000627 INF: FPGA: Recv ZSGSRD 30584
17-03-17 17:34:10.278 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:10.278 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:10.278 -07 000000623 INF: FPGA: Recv ZSGSRD 30580
17-03-17 17:34:10.288 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:10.288 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:10.288 -07 000000475 INF: FPGA: Recv ZSGSRD 30573
17-03-17 17:34:10.298 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:10.298 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:10.298 -07 000000475 INF: FPGA: Recv ZSGSRD 30575
17-03-17 17:34:10.308 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:10.308 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:10.308 -07 000000475 INF: FPGA: Recv ZSGSRD 30584
17-03-17 17:34:10.318 -07 000000442 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:10.318 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:10.318 -07 000000627 INF: FPGA: Recv ZSGSRD 30584
17-03-17 17:34:10.328 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:10.328 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:10.328 -07 000000627 INF: FPGA: Recv ZSGSRD 30582
17-03-17 17:34:10.338 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:10.338 -07 000000442 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:10.338 -07 000000475 INF: FPGA: Recv ZPIEZORD 26423
17-03-17 17:34:10.348 -07 000000442 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:10.348 -07 000000442 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.559 V. Piezo Error = -9.1 V.
17-03-17 17:34:10.348 -07 000000442 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30580 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30581 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30573 (-135.9 uncal um), Max = 30585 (-136.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:34:10.348 -07 000000442 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30580, posNoise = 5, negNoise = 7
17-03-17 17:34:10.348 -07 000000442 INF: Z Motor: After move to -0.136768, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:10.348 -07 000000442 INF: Z Motor: Settle wait time = 1447 ms, measure time = 108 ms (allowed 150 ms), total time = 1555 ms
17-03-17 17:34:10.348 -07 000000442 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:34:10.368 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.050752,
17-03-17 17:34:10.398 -07 000000442 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 17:34:10.398 -07 000000442 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:34:10.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:10.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:10.398 -07 000000442 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:10.398 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:10.398 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:34:10.398 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:10.398 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:34:10.398 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:34:10.408 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:34:10.408 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:34:10.418 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:34:10.418 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:34:10.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:34:10.468 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:34:10.668 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:34:10.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:34:10.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:34:10.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:34:10.708 -07 000000627 INF: FPGA: Recv @CAMSNAP 281
17-03-17 17:34:10.708 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 17:34:10.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 286 ms overall
17-03-17 17:34:10.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:34:10.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:10.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:34:10.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 17:34:10.808 -07 000000627 INF: Autofocus start
17-03-17 17:34:10.808 -07 000000627 INF: MeasureProfile start
17-03-17 17:34:10.808 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:10.808 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:10.818 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:34:10.818 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:34:10.818 -07 000000627 INF: MeasureProfile done
17-03-17 17:34:10.818 -07 000000627 INF: X=32  Z correction [um]=0.1299841
17-03-17 17:34:10.818 -07 000000627 INF: Autofocus finished
17-03-17 17:34:11.018 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:34:11.018 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:34:11.018 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.373046875, Z-position -0.136775759306185. ----------
17-03-17 17:34:11.018 -07 000000610 INF: Cycle	2	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:34:11.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28418, sync = True, waitForSettling = True)
17-03-17 17:34:11.028 -07 000000610 INF: Z Motor: Moving to -0.130089 mm, started at -0.136776 mm, distance = 6.69 um
17-03-17 17:34:11.028 -07 000000610 INF: FPGA: Xmit ZDACW 28418\n [Z Motor]
17-03-17 17:34:11.028 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:34:11.038 -07 000000610 INF: FPGA: 'ZDACW 28418' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:11.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:11.038 -07 000000551 INF: FPGA: Recv ZDACR 28418
17-03-17 17:34:11.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:11.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:34:11.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:11.198 -07 000000442 INF: FPGA: Recv ZSGSRD 29539
17-03-17 17:34:11.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:11.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:11.208 -07 000000475 INF: FPGA: Recv ZSGSRD 29545
17-03-17 17:34:11.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:11.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:11.218 -07 000000459 INF: FPGA: Recv ZSGSRD 29539
17-03-17 17:34:11.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:11.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:11.228 -07 000000551 INF: FPGA: Recv ZSGSRD 29537
17-03-17 17:34:11.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:11.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:11.238 -07 000000627 INF: FPGA: Recv ZSGSRD 29543
17-03-17 17:34:11.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:11.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:11.248 -07 000000623 INF: FPGA: Recv ZSGSRD 29541
17-03-17 17:34:11.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:11.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:11.258 -07 000000623 INF: FPGA: Recv ZSGSRD 29542
17-03-17 17:34:11.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:11.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:11.268 -07 000000438 INF: FPGA: Recv ZSGSRD 29544
17-03-17 17:34:11.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:11.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:11.278 -07 000000627 INF: FPGA: Recv ZSGSRD 29542
17-03-17 17:34:11.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:11.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:11.288 -07 000000438 INF: FPGA: Recv ZSGSRD 29542
17-03-17 17:34:11.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:11.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:11.298 -07 000000475 INF: FPGA: Recv ZPIEZORD 25087
17-03-17 17:34:11.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:11.308 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.336 V. Piezo Error = -9.8 V.
17-03-17 17:34:11.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29541 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29542 (-129.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29537 (-129.3 uncal um), Max = 29545 (-129.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:34:11.308 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29541, posNoise = 4, negNoise = 4
17-03-17 17:34:11.308 -07 000000610 INF: Z Motor: After move to -0.130089, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:11.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:34:11.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:11.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:11.308 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:11.308 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:11.308 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:34:11.308 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:11.308 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:34:11.308 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:34:11.308 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:34:11.308 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:34:11.308 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 17:34:11.308 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:34:11.318 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:34:11.318 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:34:11.318 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:34:11.318 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:34:11.328 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:34:11.328 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:34:11.328 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:34:11.328 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:34:11.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28595 150\n [Camera]
17-03-17 17:34:11.508 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:34:11.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:34:11.538 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:34:11.928 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:34:11.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:34:11.928 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:11.928 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:11.928 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:34:11.928 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:34:11.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:34:11.928 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:11.928 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:11.928 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:34:12.118 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28595 775
17-03-17 17:34:12.268 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:34:12.298 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:34:12.298 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 17:34:12.298 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:12.298 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:34:12.308 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:34:12.308 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:12.308 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:12.308 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:12.308 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:34:12.308 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 17:34:12.458 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:34:12.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:34:12.458 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:12.578 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:34:12.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:34:12.578 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:12.578 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:12.578 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 17:34:12.578 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:12.578 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:34:12.648 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:34:12.648 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:34:12.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28595 150' command took 8 ms to send, 1304 ms to get response, and 1318 ms overall
17-03-17 17:34:12.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:34:12.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.373046875, Z-Position -0.130101002890895. ------
17-03-17 17:34:12.648 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:12.658 -07 000000442 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13627 mm
17-03-17 17:34:12.658 -07 000000442 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:34:12.658 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:12.658 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:34:12.658 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:34:12.658 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29769, sync = True, waitForSettling = False)
17-03-17 17:34:12.658 -07 000000462 INF: Z Motor: Moving to -0.136274 mm, started at -0.130101 mm, distance = -6.17 um
17-03-17 17:34:12.658 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 17:34:12.658 -07 000000476 INF: Y Motor: Moving to 68.2126 mm, started at 67.3730 mm, delta = 0.8396 mm
17-03-17 17:34:12.668 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:12.668 -07 000000382 INF: FPGA: Recv YRDPOS 137980
17-03-17 17:34:12.678 -07 000000462 INF: FPGA: Xmit ZDACW 29769\n [Z Motor]
17-03-17 17:34:12.678 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:34:12.678 -07 000000476 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:12.678 -07 000000476 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:34:12.678 -07 000000476 INF: Y Motor: Moving 1343 steps-20
17-03-17 17:34:12.678 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:34:12.688 -07 000000462 INF: FPGA: 'ZDACW 29769' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:34:12.688 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:12.688 -07 000000459 INF: FPGA: Recv ZDACR 29769
17-03-17 17:34:12.698 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:12.698 -07 000000462 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 17:34:12.698 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:34:12.858 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:34:12.858 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 17:34:12.948 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:34:12.948 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:34:12.948 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:12.958 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:34:12.958 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:34:12.958 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:34:12.958 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:12.958 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:34:12.958 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 17:34:12.958 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:34:13.068 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 17:34:13.068 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:34:13.098 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:13.108 -07 000000561 INF: FPGA: Recv YRDPOS 139687
17-03-17 17:34:13.108 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:34:13.108 -07 000000476 INF: Y Motor: Encoder = 139687 = motor step 109130.5 = 68.2065 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:13.108 -07 000000476 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 17:34:13.108 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.109 mm/sec
17-03-17 17:34:14.058 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:14.058 -07 000000623 INF: FPGA: Recv YRDPOS 139687
17-03-17 17:34:14.068 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:14.068 -07 000000476 INF: Y Motor: Encoder = 139687 = motor step 109130.5 = 68.2065 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:14.078 -07 000000476 INF: Y Motor: After move to 68.212608, error = -0.006065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:34:14.078 -07 000000476 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:34:14.078 -07 000000476 INF: Y Motor: Moved to 68.2065 after 1418 ms (table move)
17-03-17 17:34:14.078 -07 000000442 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136274 mm (DAC = 29769)
17-03-17 17:34:14.078 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:14.088 -07 000000626 INF: FPGA: Recv ZSGSRD 30505
17-03-17 17:34:14.088 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 17:34:14.088 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:14.088 -07 000000382 INF: FPGA: Recv ZSGSRD 30510
17-03-17 17:34:14.098 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:34:14.098 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:14.098 -07 000000626 INF: FPGA: Recv ZSGSRD 30494
17-03-17 17:34:14.108 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:14.108 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:14.108 -07 000000382 INF: FPGA: Recv ZSGSRD 30507
17-03-17 17:34:14.118 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:14.118 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:14.118 -07 000000608 INF: FPGA: Recv ZSGSRD 30506
17-03-17 17:34:14.128 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:14.128 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:14.128 -07 000000438 INF: FPGA: Recv ZSGSRD 30513
17-03-17 17:34:14.138 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:14.138 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:14.138 -07 000000626 INF: FPGA: Recv ZSGSRD 30506
17-03-17 17:34:14.148 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:14.148 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:14.148 -07 000000438 INF: FPGA: Recv ZSGSRD 30498
17-03-17 17:34:14.158 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:14.158 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:14.158 -07 000000626 INF: FPGA: Recv ZSGSRD 30496
17-03-17 17:34:14.168 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:14.168 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:14.168 -07 000000623 INF: FPGA: Recv ZSGSRD 30493
17-03-17 17:34:14.178 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:14.178 -07 000000442 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:14.178 -07 000000462 INF: FPGA: Recv ZPIEZORD 26335
17-03-17 17:34:14.188 -07 000000442 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:14.188 -07 000000442 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.542 V. Piezo Error = -9.2 V.
17-03-17 17:34:14.188 -07 000000442 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30503 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30506 (-135.5 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30493 (-135.4 uncal um), Max = 30513 (-135.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:34:14.188 -07 000000442 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30503, posNoise = 10, negNoise = 10
17-03-17 17:34:14.188 -07 000000442 INF: Z Motor: After move to -0.136274, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:14.188 -07 000000442 INF: Z Motor: Settle wait time = 1425 ms, measure time = 101 ms (allowed 150 ms), total time = 1526 ms
17-03-17 17:34:14.188 -07 000000442 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 17:34:14.238 -07 000000442 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1579 ms
17-03-17 17:34:14.238 -07 000000442 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:34:14.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:14.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:14.238 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:14.238 -07 000000442 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:14.238 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:34:14.238 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:14.238 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:34:14.238 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:34:14.248 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:34:14.248 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:34:14.248 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:34:14.248 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:34:14.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:34:14.298 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:34:14.498 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:34:14.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:34:14.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:34:14.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:34:14.538 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:34:14.538 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 17:34:14.538 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 17:34:14.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:34:14.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:14.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:34:14.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:34:14.638 -07 000000442 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:14.638 -07 000000476 INF: Autofocus start
17-03-17 17:34:14.638 -07 000000476 INF: MeasureProfile start
17-03-17 17:34:14.638 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:14.648 -07 000000442 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:34:14.648 -07 000000442 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:34:14.658 -07 000000476 INF: MeasureProfile done
17-03-17 17:34:14.658 -07 000000476 INF: X=96  Z correction [um]=0.437849
17-03-17 17:34:14.658 -07 000000476 INF: Autofocus finished
17-03-17 17:34:14.848 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:34:14.848 -07 000000442 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:34:14.848 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20654296875, Z-position -0.136281094971269. ----------
17-03-17 17:34:14.848 -07 000000610 INF: Cycle	2	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:34:14.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28377, sync = True, waitForSettling = True)
17-03-17 17:34:14.858 -07 000000610 INF: Z Motor: Moving to -0.129902 mm, started at -0.136281 mm, distance = 6.38 um
17-03-17 17:34:14.858 -07 000000610 INF: FPGA: Xmit ZDACW 28377\n [Z Motor]
17-03-17 17:34:14.858 -07 000000442 INF: FPGA: Recv ZDACW
17-03-17 17:34:14.868 -07 000000610 INF: FPGA: 'ZDACW 28377' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:14.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:14.868 -07 000000442 INF: FPGA: Recv ZDACR 28377
17-03-17 17:34:14.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:14.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:34:15.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:15.028 -07 000000442 INF: FPGA: Recv ZSGSRD 29508
17-03-17 17:34:15.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:15.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:15.038 -07 000000623 INF: FPGA: Recv ZSGSRD 29513
17-03-17 17:34:15.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:15.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:15.048 -07 000000623 INF: FPGA: Recv ZSGSRD 29512
17-03-17 17:34:15.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:15.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:15.058 -07 000000462 INF: FPGA: Recv ZSGSRD 29509
17-03-17 17:34:15.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:15.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:15.068 -07 000000462 INF: FPGA: Recv ZSGSRD 29509
17-03-17 17:34:15.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:15.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:15.098 -07 000000623 INF: FPGA: Recv ZSGSRD 29511
17-03-17 17:34:15.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:34:15.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:15.128 -07 000000409 INF: FPGA: Recv ZSGSRD 29509
17-03-17 17:34:15.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 17:34:15.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:15.138 -07 000000462 INF: FPGA: Recv ZSGSRD 29512
17-03-17 17:34:15.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:15.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:15.158 -07 000000462 INF: FPGA: Recv ZSGSRD 29512
17-03-17 17:34:15.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:34:15.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:15.168 -07 000000462 INF: FPGA: Recv ZSGSRD 29512
17-03-17 17:34:15.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:15.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:15.178 -07 000000409 INF: FPGA: Recv ZPIEZORD 25054
17-03-17 17:34:15.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:15.188 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.330 V. Piezo Error = -9.8 V.
17-03-17 17:34:15.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29511 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29512 (-129.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29508 (-129.1 uncal um), Max = 29513 (-129.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:34:15.188 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29511, posNoise = 2, negNoise = 3
17-03-17 17:34:15.188 -07 000000610 INF: Z Motor: After move to -0.129902, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:15.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-17 17:34:15.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:15.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:15.188 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:15.188 -07 000000442 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:15.188 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:34:15.188 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:34:15.188 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:34:15.188 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:15.188 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:34:15.188 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:34:15.188 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:34:15.188 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:34:15.188 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:34:15.188 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:34:15.188 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:34:15.188 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:34:15.198 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:34:15.198 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:34:15.198 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:34:15.198 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:34:15.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28554 150\n [Camera]
17-03-17 17:34:15.408 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 17:34:15.728 -07 000000442 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.0344,
17-03-17 17:34:15.798 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:34:15.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:34:15.798 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:15.798 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:34:15.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:34:15.798 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:15.808 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:15.808 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:34:15.808 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:15.808 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:34:15.988 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28554 775
17-03-17 17:34:16.138 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:34:16.178 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:34:16.178 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:34:16.178 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:16.178 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:34:16.178 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 17:34:16.178 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:16.188 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:34:16.188 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:34:16.188 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:34:16.198 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:34:16.328 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:34:16.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:34:16.328 -07 000000631 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:16.438 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:34:16.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:34:16.438 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:16.438 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:16.438 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:34:16.448 -07 000000631 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:16.448 -07 000000631 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) start.
17-03-17 17:34:16.508 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:34:16.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:34:16.518 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:34:16.518 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:34:16.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28554 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-17 17:34:16.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:34:16.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20654296875, Z-Position -0.129908276526643. ------
17-03-17 17:34:16.528 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13640 mm
17-03-17 17:34:16.528 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:34:16.528 -07 000000442 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:16.528 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 17:34:16.528 -07 000000623 INF: Y Motor: Moving to 69.0426 mm, started at 68.2065 mm, delta = 0.8361 mm
17-03-17 17:34:16.528 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:16.528 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29796, sync = True, waitForSettling = False)
17-03-17 17:34:16.528 -07 000000627 INF: Z Motor: Moving to -0.136397 mm, started at -0.129908 mm, distance = -6.49 um
17-03-17 17:34:16.538 -07 000000442 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:34:16.538 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:16.538 -07 000000475 INF: FPGA: Recv YRDPOS 139687
17-03-17 17:34:16.548 -07 000000627 INF: FPGA: Xmit ZDACW 29796\n [Z Motor]
17-03-17 17:34:16.548 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:34:16.548 -07 000000623 INF: Y Motor: Encoder = 139687 = motor step 109130.5 = 68.2065 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:16.548 -07 000000623 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:34:16.548 -07 000000623 INF: Y Motor: Moving 1338 steps-12
17-03-17 17:34:16.548 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 17:34:16.558 -07 000000442 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:34:16.558 -07 000000627 INF: FPGA: 'ZDACW 29796' command took 3 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:34:16.568 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:34:16.578 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:16.578 -07 000000486 INF: FPGA: Recv ZDACR 29796
17-03-17 17:34:16.588 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:34:16.588 -07 000000627 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 17:34:16.758 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:34:16.758 -07 000000442 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:34:16.828 -07 000000631 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 17:34:16.828 -07 000000631 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 17:34:16.828 -07 000000631 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:16.828 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 17:34:16.828 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:34:16.828 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:16.838 -07 000000631 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:16.838 -07 000000631 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-17 17:34:16.838 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:16.838 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 17:34:16.938 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 17:34:16.938 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 17:34:16.968 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:16.978 -07 000000627 INF: FPGA: Recv YRDPOS 141370
17-03-17 17:34:16.978 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:34:16.978 -07 000000623 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:16.978 -07 000000623 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 17:34:16.978 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.836 mm, average velocity = 2.122 mm/sec
17-03-17 17:34:17.928 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:17.928 -07 000000409 INF: FPGA: Recv YRDPOS 141370
17-03-17 17:34:17.938 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:17.938 -07 000000623 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:17.948 -07 000000623 INF: Y Motor: After move to 69.042610, error = -0.014290, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:34:17.948 -07 000000623 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:34:17.948 -07 000000623 INF: Y Motor: Moved to 69.0283 after 1424 ms (table move)
17-03-17 17:34:17.958 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136397 mm (DAC = 29796)
17-03-17 17:34:17.958 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:17.958 -07 000000623 INF: FPGA: Recv ZSGSRD 30522
17-03-17 17:34:17.968 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:34:17.968 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:17.968 -07 000000623 INF: FPGA: Recv ZSGSRD 30520
17-03-17 17:34:17.978 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:17.978 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:17.978 -07 000000462 INF: FPGA: Recv ZSGSRD 30513
17-03-17 17:34:17.988 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:17.988 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:17.988 -07 000000627 INF: FPGA: Recv ZSGSRD 30522
17-03-17 17:34:17.998 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:17.998 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:17.998 -07 000000442 INF: FPGA: Recv ZSGSRD 30523
17-03-17 17:34:18.008 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:18.008 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:18.008 -07 000000442 INF: FPGA: Recv ZSGSRD 30522
17-03-17 17:34:18.018 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:18.018 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:18.018 -07 000000627 INF: FPGA: Recv ZSGSRD 30524
17-03-17 17:34:18.028 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:18.028 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:18.028 -07 000000462 INF: FPGA: Recv ZSGSRD 30522
17-03-17 17:34:18.038 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:18.038 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:18.038 -07 000000551 INF: FPGA: Recv ZSGSRD 30528
17-03-17 17:34:18.048 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:18.048 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:18.048 -07 000000551 INF: FPGA: Recv ZSGSRD 30516
17-03-17 17:34:18.058 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:18.058 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:18.058 -07 000000551 INF: FPGA: Recv ZPIEZORD 26420
17-03-17 17:34:18.068 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:18.068 -07 000000459 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -9.0 V.
17-03-17 17:34:18.068 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30521 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30522 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30513 (-135.6 uncal um), Max = 30528 (-135.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:34:18.068 -07 000000459 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30521, posNoise = 7, negNoise = 8
17-03-17 17:34:18.068 -07 000000459 INF: Z Motor: After move to -0.136397, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:18.068 -07 000000459 INF: Z Motor: Settle wait time = 1426 ms, measure time = 108 ms (allowed 150 ms), total time = 1534 ms
17-03-17 17:34:18.068 -07 000000459 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:34:18.118 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 17:34:18.118 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:34:18.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:18.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:18.118 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:18.118 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:18.118 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:34:18.118 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:18.118 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:34:18.118 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:34:18.128 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:34:18.128 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:34:18.128 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 17:34:18.128 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 17:34:18.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:34:18.178 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:34:18.378 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:34:18.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:34:18.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:34:18.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:34:18.418 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:34:18.418 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 17:34:18.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 17:34:18.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:34:18.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:18.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:34:18.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:34:18.518 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:18.518 -07 000000462 INF: Autofocus start
17-03-17 17:34:18.518 -07 000000462 INF: MeasureProfile start
17-03-17 17:34:18.518 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:18.528 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:34:18.528 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:34:18.528 -07 000000462 INF: MeasureProfile done
17-03-17 17:34:18.528 -07 000000462 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:34:18.528 -07 000000462 INF: Autofocus finished
17-03-17 17:34:18.728 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:34:18.728 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 17:34:18.728 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0283203125, Z-position -0.136396730789821. ----------
17-03-17 17:34:18.738 -07 000000610 INF: Cycle	2	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:34:18.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28303, sync = True, waitForSettling = True)
17-03-17 17:34:18.738 -07 000000610 INF: Z Motor: Moving to -0.129563 mm, started at -0.136397 mm, distance = 6.83 um
17-03-17 17:34:18.738 -07 000000610 INF: FPGA: Xmit ZDACW 28303\n [Z Motor]
17-03-17 17:34:18.738 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 17:34:18.748 -07 000000610 INF: FPGA: 'ZDACW 28303' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:34:18.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:18.748 -07 000000462 INF: FPGA: Recv ZDACR 28303
17-03-17 17:34:18.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:18.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:34:18.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:18.908 -07 000000551 INF: FPGA: Recv ZSGSRD 29460
17-03-17 17:34:18.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:18.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:18.918 -07 000000551 INF: FPGA: Recv ZSGSRD 29463
17-03-17 17:34:18.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:18.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:18.928 -07 000000551 INF: FPGA: Recv ZSGSRD 29455
17-03-17 17:34:18.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:18.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:18.938 -07 000000551 INF: FPGA: Recv ZSGSRD 29454
17-03-17 17:34:18.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:18.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:18.948 -07 000000551 INF: FPGA: Recv ZSGSRD 29460
17-03-17 17:34:18.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:18.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:18.958 -07 000000459 INF: FPGA: Recv ZSGSRD 29462
17-03-17 17:34:18.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:18.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:18.968 -07 000000462 INF: FPGA: Recv ZSGSRD 29461
17-03-17 17:34:18.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:18.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:18.978 -07 000000459 INF: FPGA: Recv ZSGSRD 29452
17-03-17 17:34:18.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:18.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:18.988 -07 000000459 INF: FPGA: Recv ZSGSRD 29459
17-03-17 17:34:18.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:18.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:18.998 -07 000000551 INF: FPGA: Recv ZSGSRD 29461
17-03-17 17:34:19.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:19.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:19.008 -07 000000462 INF: FPGA: Recv ZPIEZORD 24997
17-03-17 17:34:19.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:19.018 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.319 V. Piezo Error = -9.8 V.
17-03-17 17:34:19.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29459 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29460 (-128.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29452 (-128.8 uncal um), Max = 29463 (-128.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:34:19.018 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29459, posNoise = 4, negNoise = 7
17-03-17 17:34:19.018 -07 000000610 INF: Z Motor: After move to -0.129563, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:19.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:34:19.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:19.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:19.018 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:19.018 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:19.018 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:34:19.018 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:19.018 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:34:19.018 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:34:19.018 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:34:19.018 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:34:19.018 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:34:19.018 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:34:19.018 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:34:19.018 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:34:19.028 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:34:19.028 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:34:19.038 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:34:19.038 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:34:19.038 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:34:19.038 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:34:19.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28480 150\n [Camera]
17-03-17 17:34:19.238 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:34:19.628 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:34:19.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:34:19.628 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:19.628 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:19.628 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) start.
17-03-17 17:34:19.628 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:34:19.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:34:19.628 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:19.628 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:19.628 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:34:19.818 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28480 775
17-03-17 17:34:19.968 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:34:20.008 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:34:20.008 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:34:20.008 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:20.008 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:34:20.008 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:34:20.008 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:20.008 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:20.008 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:34:20.008 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:20.018 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:34:20.158 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:34:20.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:34:20.158 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:20.268 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:34:20.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:34:20.268 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:20.268 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:20.268 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:34:20.278 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:20.278 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) start.
17-03-17 17:34:20.348 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:34:20.348 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:34:20.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28480 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:34:20.348 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:34:20.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0283203125, Z-Position -0.129574217495271. ------
17-03-17 17:34:20.358 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:20.358 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13590 mm
17-03-17 17:34:20.358 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:34:20.358 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:20.358 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 17:34:20.358 -07 000000476 INF: Y Motor: Moving to 69.8726 mm, started at 69.0283 mm, delta = 0.8443 mm
17-03-17 17:34:20.358 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29688, sync = True, waitForSettling = False)
17-03-17 17:34:20.358 -07 000000462 INF: Z Motor: Moving to -0.135903 mm, started at -0.129574 mm, distance = -6.33 um
17-03-17 17:34:20.368 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:34:20.368 -07 000000462 INF: FPGA: Xmit ZDACW 29688\n [Z Motor]
17-03-17 17:34:20.368 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:34:20.378 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:20.378 -07 000000462 INF: FPGA: 'ZDACW 29688' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:34:20.378 -07 000000486 INF: FPGA: Recv YRDPOS 141371
17-03-17 17:34:20.388 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:34:20.388 -07 000000476 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:34:20.388 -07 000000476 INF: Y Motor: Encoder = 141371 = motor step 110446.1 = 69.0288 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:20.388 -07 000000476 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:34:20.388 -07 000000476 INF: Y Motor: Moving 1350 steps-29
17-03-17 17:34:20.398 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:20.398 -07 000000631 INF: FPGA: Recv ZDACR 29688
17-03-17 17:34:20.408 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:34:20.408 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:34:20.408 -07 000000462 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 17:34:20.588 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:34:20.588 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-17 17:34:20.648 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:34:20.648 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:34:20.648 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:20.648 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 17:34:20.648 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 17:34:20.648 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:20.658 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:20.658 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:20.658 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 495 ms.
17-03-17 17:34:20.658 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:34:20.778 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 17:34:20.778 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 17:34:20.808 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:20.818 -07 000000626 INF: FPGA: Recv YRDPOS 143083
17-03-17 17:34:20.818 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:34:20.818 -07 000000476 INF: Y Motor: Encoder = 143083 = motor step 111783.6 = 69.8647 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:20.818 -07 000000476 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 17:34:20.818 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.159 mm/sec
17-03-17 17:34:21.088 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.046637,
17-03-17 17:34:21.508 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:34:21.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:34:21.768 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:21.768 -07 000000486 INF: FPGA: Recv YRDPOS 143083
17-03-17 17:34:21.778 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:21.778 -07 000000476 INF: Y Motor: Encoder = 143083 = motor step 111783.6 = 69.8647 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:21.788 -07 000000476 INF: Y Motor: After move to 69.872612, error = -0.007866, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:34:21.788 -07 000000476 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:34:21.788 -07 000000476 INF: Y Motor: Moved to 69.8647 after 1431 ms (table move)
17-03-17 17:34:21.798 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135903 mm (DAC = 29688)
17-03-17 17:34:21.798 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:21.798 -07 000000438 INF: FPGA: Recv ZSGSRD 30457
17-03-17 17:34:21.808 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:34:21.808 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:21.808 -07 000000438 INF: FPGA: Recv ZSGSRD 30438
17-03-17 17:34:21.818 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:21.818 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:21.818 -07 000000478 INF: FPGA: Recv ZSGSRD 30439
17-03-17 17:34:21.828 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:21.828 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:21.828 -07 000000478 INF: FPGA: Recv ZSGSRD 30452
17-03-17 17:34:21.838 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:21.838 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:21.838 -07 000000438 INF: FPGA: Recv ZSGSRD 30452
17-03-17 17:34:21.848 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:21.848 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:21.848 -07 000000438 INF: FPGA: Recv ZSGSRD 30451
17-03-17 17:34:21.858 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:21.858 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:21.858 -07 000000608 INF: FPGA: Recv ZSGSRD 30447
17-03-17 17:34:21.868 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:21.868 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:21.868 -07 000000608 INF: FPGA: Recv ZSGSRD 30446
17-03-17 17:34:21.878 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:21.878 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:21.878 -07 000000608 INF: FPGA: Recv ZSGSRD 30443
17-03-17 17:34:21.888 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:21.888 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:21.888 -07 000000608 INF: FPGA: Recv ZSGSRD 30438
17-03-17 17:34:21.898 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:21.898 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:21.898 -07 000000608 INF: FPGA: Recv ZPIEZORD 26289
17-03-17 17:34:21.908 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:21.908 -07 000000561 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.530 V. Piezo Error = -9.1 V.
17-03-17 17:34:21.908 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30446 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30446 (-135.1 uncal um), StdDev = 7 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30438 (-135.1 uncal um), Max = 30457 (-135.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:34:21.908 -07 000000561 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30446, posNoise = 11, negNoise = 8
17-03-17 17:34:21.908 -07 000000561 INF: Z Motor: After move to -0.135903, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:21.908 -07 000000561 INF: Z Motor: Settle wait time = 1435 ms, measure time = 108 ms (allowed 150 ms), total time = 1543 ms
17-03-17 17:34:21.908 -07 000000561 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:34:21.958 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 17:34:21.958 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:34:21.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:21.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:21.958 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:21.958 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:21.968 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:34:21.968 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:21.968 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:34:21.968 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:34:21.968 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:34:21.968 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:34:21.978 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:34:21.978 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 17:34:21.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:34:22.028 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:34:22.228 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:34:22.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:34:22.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:34:22.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:34:22.268 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:34:22.268 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:34:22.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 17:34:22.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 17:34:22.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:22.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:34:22.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 17:34:22.368 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:22.368 -07 000000608 INF: Autofocus start
17-03-17 17:34:22.368 -07 000000608 INF: MeasureProfile start
17-03-17 17:34:22.378 -07 000000608 INF: MeasureProfile done
17-03-17 17:34:22.378 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:34:22.378 -07 000000608 INF: Autofocus finished
17-03-17 17:34:23.078 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:23.078 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 700 ms to get response, and 707 ms overall
17-03-17 17:34:23.078 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:34:23.278 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:34:23.278 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:34:23.278 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86474609375, Z-position -0.135914914879189. ----------
17-03-17 17:34:23.288 -07 000000610 INF: Cycle	2	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:34:23.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28195, sync = True, waitForSettling = True)
17-03-17 17:34:23.288 -07 000000610 INF: Z Motor: Moving to -0.129068 mm, started at -0.135915 mm, distance = 6.85 um
17-03-17 17:34:23.288 -07 000000610 INF: FPGA: Xmit ZDACW 28195\n [Z Motor]
17-03-17 17:34:23.288 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:34:23.298 -07 000000610 INF: FPGA: 'ZDACW 28195' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:34:23.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:23.298 -07 000000627 INF: FPGA: Recv ZDACR 28195
17-03-17 17:34:23.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:23.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:34:23.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:23.458 -07 000000561 INF: FPGA: Recv ZSGSRD 29380
17-03-17 17:34:23.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:23.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:23.468 -07 000000627 INF: FPGA: Recv ZSGSRD 29385
17-03-17 17:34:23.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:23.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:23.478 -07 000000561 INF: FPGA: Recv ZSGSRD 29380
17-03-17 17:34:23.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:23.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:23.488 -07 000000627 INF: FPGA: Recv ZSGSRD 29385
17-03-17 17:34:23.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:23.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:23.498 -07 000000561 INF: FPGA: Recv ZSGSRD 29385
17-03-17 17:34:23.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:23.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:23.508 -07 000000627 INF: FPGA: Recv ZSGSRD 29379
17-03-17 17:34:23.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:23.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:23.518 -07 000000561 INF: FPGA: Recv ZSGSRD 29381
17-03-17 17:34:23.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:23.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:23.528 -07 000000627 INF: FPGA: Recv ZSGSRD 29385
17-03-17 17:34:23.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:23.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:23.538 -07 000000409 INF: FPGA: Recv ZSGSRD 29389
17-03-17 17:34:23.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:23.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:23.548 -07 000000561 INF: FPGA: Recv ZSGSRD 29377
17-03-17 17:34:23.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:23.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:23.558 -07 000000627 INF: FPGA: Recv ZPIEZORD 24913
17-03-17 17:34:23.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:23.568 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.302 V. Piezo Error = -9.8 V.
17-03-17 17:34:23.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29383 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29383 (-128.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29377 (-128.3 uncal um), Max = 29389 (-128.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:34:23.568 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29383, posNoise = 6, negNoise = 6
17-03-17 17:34:23.568 -07 000000610 INF: Z Motor: After move to -0.129068, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:23.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:34:23.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:23.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:23.568 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:23.568 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:23.568 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:34:23.568 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:23.568 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:34:23.568 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:34:23.568 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:34:23.568 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:34:23.568 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:34:23.568 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:34:23.578 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:34:23.578 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:34:23.578 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:34:23.578 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:34:23.588 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:34:23.588 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:34:23.588 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:34:23.588 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:34:23.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28372 150\n [Camera]
17-03-17 17:34:23.788 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:34:24.178 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:34:24.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:34:24.178 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:24.178 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:24.178 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) start.
17-03-17 17:34:24.178 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:34:24.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:34:24.178 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:24.178 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:24.178 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:34:24.368 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28372 775
17-03-17 17:34:24.518 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:34:24.558 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:34:24.558 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:34:24.558 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:24.558 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:34:24.558 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:34:24.558 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:24.558 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:24.558 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:34:24.558 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:24.568 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 17:34:24.708 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-17 17:34:24.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-17 17:34:24.708 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:24.818 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-17 17:34:24.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-17 17:34:24.818 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:24.828 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:24.828 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:34:24.828 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:24.828 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) start.
17-03-17 17:34:24.898 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:34:24.898 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:34:24.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28372 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:34:24.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:34:24.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86474609375, Z-Position -0.129085977372497. ------
17-03-17 17:34:24.908 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:24.908 -07 000000442 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13548 mm
17-03-17 17:34:24.908 -07 000000442 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:34:24.908 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 17:34:24.908 -07 000000623 INF: Y Motor: Moving to 70.7026 mm, started at 69.8647 mm, delta = 0.8379 mm
17-03-17 17:34:24.908 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29597, sync = True, waitForSettling = False)
17-03-17 17:34:24.908 -07 000000561 INF: Z Motor: Moving to -0.135486 mm, started at -0.129086 mm, distance = -6.40 um
17-03-17 17:34:24.908 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:24.918 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:24.918 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:24.918 -07 000000462 INF: FPGA: Recv YRDPOS 143083
17-03-17 17:34:24.928 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 17:34:24.928 -07 000000623 INF: Y Motor: Encoder = 143083 = motor step 111783.6 = 69.8647 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:24.928 -07 000000623 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:34:24.928 -07 000000623 INF: Y Motor: Moving 1341 steps-16
17-03-17 17:34:24.928 -07 000000561 INF: FPGA: Xmit ZDACW 29597\n [Z Motor]
17-03-17 17:34:24.928 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:34:24.938 -07 000000561 INF: FPGA: 'ZDACW 29597' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:34:24.938 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:34:24.948 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:34:24.958 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:24.958 -07 000000626 INF: FPGA: Recv ZDACR 29597
17-03-17 17:34:24.968 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:34:24.968 -07 000000561 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 17:34:25.138 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:34:25.138 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 17:34:25.208 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 17:34:25.208 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:34:25.208 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:25.208 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 17:34:25.208 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:34:25.208 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:25.218 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:34:25.218 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 503 ms.
17-03-17 17:34:25.218 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:34:25.218 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 17:34:25.328 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 17:34:25.328 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 17:34:25.358 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:25.358 -07 000000462 INF: FPGA: Recv YRDPOS 144772
17-03-17 17:34:25.368 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:34:25.368 -07 000000623 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:25.368 -07 000000623 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:34:25.368 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.838 mm, average velocity = 2.100 mm/sec
17-03-17 17:34:26.318 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:26.318 -07 000000551 INF: FPGA: Recv YRDPOS 144773
17-03-17 17:34:26.328 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:26.328 -07 000000623 INF: Y Motor: Encoder = 144773 = motor step 113103.9 = 70.6899 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:26.338 -07 000000623 INF: Y Motor: After move to 70.702606, error = -0.012665, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:34:26.338 -07 000000623 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:34:26.338 -07 000000623 INF: Y Motor: Moved to 70.6899 after 1435 ms (table move)
17-03-17 17:34:26.348 -07 000000442 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135486 mm (DAC = 29597)
17-03-17 17:34:26.348 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:26.348 -07 000000623 INF: FPGA: Recv ZSGSRD 30390
17-03-17 17:34:26.358 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:34:26.358 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:26.358 -07 000000623 INF: FPGA: Recv ZSGSRD 30384
17-03-17 17:34:26.368 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:26.368 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:26.368 -07 000000623 INF: FPGA: Recv ZSGSRD 30383
17-03-17 17:34:26.378 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:26.378 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:26.378 -07 000000623 INF: FPGA: Recv ZSGSRD 30386
17-03-17 17:34:26.388 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:26.388 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:26.388 -07 000000382 INF: FPGA: Recv ZSGSRD 30384
17-03-17 17:34:26.398 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:34:26.398 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:26.398 -07 000000475 INF: FPGA: Recv ZSGSRD 30379
17-03-17 17:34:26.408 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:26.408 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:26.408 -07 000000475 INF: FPGA: Recv ZSGSRD 30380
17-03-17 17:34:26.418 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:26.418 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:27.258 -07 000000631 INF: FPGA: Recv ZSGSRD 30377
17-03-17 17:34:27.258 -07 000000631 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:34:27.258 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 833 ms to get response, and 843 ms overall
17-03-17 17:34:27.258 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:34:27.258 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.047997,
17-03-17 17:34:27.258 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:27.258 -07 000000631 INF: FPGA: Recv ZSGSRD 30382
17-03-17 17:34:27.268 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:34:27.268 -07 000000442 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:27.268 -07 000000618 INF: FPGA: Recv ZSGSRD 30374
17-03-17 17:34:27.278 -07 000000442 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:27.298 -07 000000442 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:27.298 -07 000000623 INF: FPGA: Recv ZPIEZORD 26228
17-03-17 17:34:27.308 -07 000000442 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:34:27.308 -07 000000442 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.516 V. Piezo Error = -9.1 V.
17-03-17 17:34:27.308 -07 000000442 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30382 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30382 (-134.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30374 (-134.7 uncal um), Max = 30390 (-134.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:34:27.308 -07 000000442 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30382, posNoise = 8, negNoise = 8
17-03-17 17:34:27.308 -07 000000442 INF: Z Motor: After move to -0.135486, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:27.308 -07 000000442 INF: Z Motor: Settle wait time = 1438 ms, measure time = 958 ms (allowed 150 ms), total time = 2396 ms
17-03-17 17:34:27.308 -07 000000442 INF: Z Motor: Warning: Actual position measuring time = 958 ms, longer than max expected time of 150 ms
17-03-17 17:34:27.308 -07 000000442 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2400 ms
17-03-17 17:34:27.308 -07 000000442 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:34:27.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:27.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:27.308 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:27.308 -07 000000442 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:27.308 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:34:27.308 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:27.318 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:34:27.318 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:34:27.318 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:34:27.318 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:34:27.328 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 17:34:27.328 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 17:34:27.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:34:27.368 -07 000000442 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:34:27.568 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:34:27.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:34:27.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:34:27.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:34:27.608 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:34:27.608 -07 000000442 INF: FPGA: Recv CAMSNAP
17-03-17 17:34:27.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 17:34:27.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:34:27.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:27.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:34:27.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:34:27.708 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:27.708 -07 000000475 INF: Autofocus start
17-03-17 17:34:27.708 -07 000000475 INF: MeasureProfile start
17-03-17 17:34:27.708 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:27.718 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:34:27.718 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:34:27.718 -07 000000475 INF: MeasureProfile done
17-03-17 17:34:27.718 -07 000000475 INF: X=32  Z correction [um]=0.1299841
17-03-17 17:34:27.718 -07 000000475 INF: Autofocus finished
17-03-17 17:34:27.918 -07 000000631 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:34:27.918 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:34:27.918 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68994140625, Z-position -0.135503765302116. ----------
17-03-17 17:34:27.918 -07 000000610 INF: Cycle	2	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:34:27.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28138, sync = True, waitForSettling = True)
17-03-17 17:34:27.928 -07 000000610 INF: Z Motor: Moving to -0.128808 mm, started at -0.135504 mm, distance = 6.70 um
17-03-17 17:34:27.928 -07 000000610 INF: FPGA: Xmit ZDACW 28138\n [Z Motor]
17-03-17 17:34:27.928 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:34:27.938 -07 000000610 INF: FPGA: 'ZDACW 28138' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:34:27.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:27.938 -07 000000475 INF: FPGA: Recv ZDACR 28138
17-03-17 17:34:27.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:27.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:34:28.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:28.098 -07 000000475 INF: FPGA: Recv ZSGSRD 29339
17-03-17 17:34:28.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:28.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:28.108 -07 000000459 INF: FPGA: Recv ZSGSRD 29336
17-03-17 17:34:28.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:28.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:28.118 -07 000000459 INF: FPGA: Recv ZSGSRD 29342
17-03-17 17:34:28.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:28.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:28.128 -07 000000459 INF: FPGA: Recv ZSGSRD 29342
17-03-17 17:34:28.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:28.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:28.138 -07 000000459 INF: FPGA: Recv ZSGSRD 29343
17-03-17 17:34:28.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:28.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:28.148 -07 000000459 INF: FPGA: Recv ZSGSRD 29342
17-03-17 17:34:28.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:28.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:28.158 -07 000000409 INF: FPGA: Recv ZSGSRD 29334
17-03-17 17:34:28.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:28.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:28.168 -07 000000409 INF: FPGA: Recv ZSGSRD 29343
17-03-17 17:34:28.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:28.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:28.178 -07 000000409 INF: FPGA: Recv ZSGSRD 29338
17-03-17 17:34:28.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:28.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:28.188 -07 000000409 INF: FPGA: Recv ZSGSRD 29338
17-03-17 17:34:28.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:28.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:28.198 -07 000000409 INF: FPGA: Recv ZPIEZORD 24895
17-03-17 17:34:28.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:28.208 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.294 V. Piezo Error = -9.8 V.
17-03-17 17:34:28.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29340 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29340 (-128.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29334 (-128.0 uncal um), Max = 29343 (-128.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:34:28.208 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29340, posNoise = 3, negNoise = 6
17-03-17 17:34:28.208 -07 000000610 INF: Z Motor: After move to -0.128808, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:28.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:34:28.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:28.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:28.208 -07 000000442 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:28.208 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:28.208 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:34:28.208 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:28.208 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:34:28.208 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:34:28.208 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:34:28.208 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:34:28.208 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:34:28.208 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:34:28.218 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:34:28.218 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:34:28.218 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:34:28.218 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:34:28.218 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:34:28.218 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:34:28.218 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:34:28.218 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:34:28.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28314 150\n [Camera]
17-03-17 17:34:28.428 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:34:28.818 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:34:28.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:34:28.818 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:28.818 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:28.818 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) start.
17-03-17 17:34:28.818 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:34:28.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:34:28.818 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:28.818 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:28.818 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:34:29.008 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28314 778
17-03-17 17:34:29.158 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:34:29.188 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:34:29.188 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:34:29.188 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:29.198 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:34:29.198 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:34:29.198 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:34:29.198 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:29.198 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:34:29.198 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:34:29.198 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 17:34:29.348 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:34:29.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:34:29.348 -07 000000631 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:29.348 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:34:29.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:34:29.348 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:29.348 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:29.348 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:34:29.358 -07 000000631 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:29.358 -07 000000631 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) start.
17-03-17 17:34:29.538 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:34:29.538 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:34:29.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28314 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-17 17:34:29.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:34:29.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68994140625, Z-Position -0.128809736250401. ------
17-03-17 17:34:29.548 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13553 mm
17-03-17 17:34:29.548 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:34:29.548 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:29.548 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 17:34:29.548 -07 000000462 INF: Y Motor: Moving to 71.5326 mm, started at 70.6899 mm, delta = 0.8427 mm
17-03-17 17:34:29.548 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:29.548 -07 000000442 INF: Z Motor: Entering MoveAbsStepped (DAC = 29607, sync = True, waitForSettling = False)
17-03-17 17:34:29.548 -07 000000442 INF: Z Motor: Moving to -0.135532 mm, started at -0.128810 mm, distance = -6.72 um
17-03-17 17:34:29.558 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:34:29.558 -07 000000442 INF: FPGA: Xmit ZDACW 29607\n [Z Motor]
17-03-17 17:34:29.558 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:34:29.568 -07 000000442 INF: FPGA: 'ZDACW 29607' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:34:29.568 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:29.568 -07 000000623 INF: FPGA: Recv YRDPOS 144773
17-03-17 17:34:29.578 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:34:29.578 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:34:29.578 -07 000000462 INF: Y Motor: Encoder = 144773 = motor step 113103.9 = 70.6899 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:29.578 -07 000000462 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:34:29.578 -07 000000462 INF: Y Motor: Moving 1348 steps-27
17-03-17 17:34:29.588 -07 000000442 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:29.588 -07 000000476 INF: FPGA: Recv ZDACR 29607
17-03-17 17:34:29.598 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:34:29.598 -07 000000442 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:34:29.598 -07 000000442 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 17:34:29.748 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 17:34:29.748 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:34:29.748 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:29.748 -07 000000631 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 17:34:29.748 -07 000000631 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:34:29.748 -07 000000631 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:29.748 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:34:29.758 -07 000000631 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:34:29.758 -07 000000631 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 17:34:29.758 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 17:34:29.778 -07 000000442 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:34:29.778 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:34:29.968 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 17:34:29.968 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:34:29.998 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:30.008 -07 000000438 INF: FPGA: Recv YRDPOS 146474
17-03-17 17:34:30.008 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:34:30.008 -07 000000462 INF: Y Motor: Encoder = 146474 = motor step 114432.8 = 71.5205 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:30.008 -07 000000462 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-17 17:34:30.008 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.123 mm/sec
17-03-17 17:34:30.958 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:30.958 -07 000000626 INF: FPGA: Recv YRDPOS 146474
17-03-17 17:34:30.968 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:30.968 -07 000000462 INF: Y Motor: Encoder = 146474 = motor step 114432.8 = 71.5205 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:30.978 -07 000000462 INF: Y Motor: After move to 71.532608, error = -0.012100, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:34:30.978 -07 000000462 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:34:30.978 -07 000000462 INF: Y Motor: Moved to 71.5205 after 1435 ms (table move)
17-03-17 17:34:30.988 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135532 mm (DAC = 29607)
17-03-17 17:34:30.988 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:30.988 -07 000000627 INF: FPGA: Recv ZSGSRD 30384
17-03-17 17:34:30.998 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:34:30.998 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:30.998 -07 000000442 INF: FPGA: Recv ZSGSRD 30384
17-03-17 17:34:31.008 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:31.008 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:31.008 -07 000000631 INF: FPGA: Recv ZSGSRD 30391
17-03-17 17:34:31.018 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:31.018 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:31.018 -07 000000462 INF: FPGA: Recv ZSGSRD 30384
17-03-17 17:34:31.028 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:31.028 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:31.028 -07 000000486 INF: FPGA: Recv ZSGSRD 30388
17-03-17 17:34:31.038 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:31.038 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:31.038 -07 000000476 INF: FPGA: Recv ZSGSRD 30383
17-03-17 17:34:31.048 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:31.048 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:31.048 -07 000000631 INF: FPGA: Recv ZSGSRD 30401
17-03-17 17:34:31.058 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:31.058 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:31.058 -07 000000626 INF: FPGA: Recv ZSGSRD 30387
17-03-17 17:34:31.068 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:31.068 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:31.068 -07 000000486 INF: FPGA: Recv ZSGSRD 30386
17-03-17 17:34:31.078 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:31.078 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:31.078 -07 000000618 INF: FPGA: Recv ZSGSRD 30385
17-03-17 17:34:31.088 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:31.088 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:31.088 -07 000000631 INF: FPGA: Recv ZPIEZORD 26269
17-03-17 17:34:31.098 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:31.098 -07 000000409 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.518 V. Piezo Error = -9.1 V.
17-03-17 17:34:31.098 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30387 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30386 (-134.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30383 (-134.7 uncal um), Max = 30401 (-134.8 uncal um), Pos Noise = 14 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:34:31.098 -07 000000409 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30387, posNoise = 14, negNoise = 4
17-03-17 17:34:31.098 -07 000000409 INF: Z Motor: After move to -0.135532, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:31.098 -07 000000409 INF: Z Motor: Settle wait time = 1434 ms, measure time = 108 ms (allowed 150 ms), total time = 1542 ms
17-03-17 17:34:31.098 -07 000000409 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:34:31.148 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 17:34:31.148 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:34:31.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:31.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:31.148 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:31.148 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:31.148 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:34:31.148 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:31.148 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:34:31.148 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:34:31.158 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:34:31.158 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:34:31.158 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:34:31.158 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:34:31.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:34:31.208 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:34:31.408 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:34:31.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:34:31.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:34:31.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:34:31.448 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:34:31.448 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 17:34:31.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 17:34:31.508 -07 000000442 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:34:31.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:34:31.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:31.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:34:31.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:34:31.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:34:31.548 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:31.548 -07 000000631 INF: Autofocus start
17-03-17 17:34:31.548 -07 000000631 INF: MeasureProfile start
17-03-17 17:34:31.558 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:31.558 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:34:31.558 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:34:31.568 -07 000000631 INF: MeasureProfile done
17-03-17 17:34:31.568 -07 000000631 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:34:31.568 -07 000000631 INF: Autofocus finished
17-03-17 17:34:31.758 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:34:31.758 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:34:31.758 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5205078125, Z-position -0.135535886362825. ----------
17-03-17 17:34:31.758 -07 000000610 INF: Cycle	2	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:34:31.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28115, sync = True, waitForSettling = True)
17-03-17 17:34:31.768 -07 000000610 INF: Z Motor: Moving to -0.128702 mm, started at -0.135536 mm, distance = 6.83 um
17-03-17 17:34:31.768 -07 000000610 INF: FPGA: Xmit ZDACW 28115\n [Z Motor]
17-03-17 17:34:31.768 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 17:34:31.778 -07 000000610 INF: FPGA: 'ZDACW 28115' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:34:31.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:31.778 -07 000000409 INF: FPGA: Recv ZDACR 28115
17-03-17 17:34:31.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:31.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:34:31.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:31.938 -07 000000486 INF: FPGA: Recv ZSGSRD 29325
17-03-17 17:34:31.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:31.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:31.948 -07 000000442 INF: FPGA: Recv ZSGSRD 29326
17-03-17 17:34:31.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:31.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:31.958 -07 000000462 INF: FPGA: Recv ZSGSRD 29316
17-03-17 17:34:31.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:31.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:31.968 -07 000000438 INF: FPGA: Recv ZSGSRD 29323
17-03-17 17:34:31.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:31.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:31.978 -07 000000618 INF: FPGA: Recv ZSGSRD 29326
17-03-17 17:34:31.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:31.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:31.988 -07 000000442 INF: FPGA: Recv ZSGSRD 29323
17-03-17 17:34:31.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:31.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:31.998 -07 000000626 INF: FPGA: Recv ZSGSRD 29329
17-03-17 17:34:32.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:32.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:32.008 -07 000000476 INF: FPGA: Recv ZSGSRD 29320
17-03-17 17:34:32.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:32.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:32.018 -07 000000438 INF: FPGA: Recv ZSGSRD 29329
17-03-17 17:34:32.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:32.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:32.028 -07 000000486 INF: FPGA: Recv ZSGSRD 29330
17-03-17 17:34:32.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:32.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:32.038 -07 000000462 INF: FPGA: Recv ZPIEZORD 24848
17-03-17 17:34:32.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:32.048 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.290 V. Piezo Error = -9.8 V.
17-03-17 17:34:32.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29325 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29326 (-127.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29316 (-127.9 uncal um), Max = 29330 (-128.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:34:32.048 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29325, posNoise = 5, negNoise = 9
17-03-17 17:34:32.048 -07 000000610 INF: Z Motor: After move to -0.128702, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:32.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:34:32.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:32.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:32.048 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:34:32.048 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:32.048 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:32.048 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:34:32.048 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:34:32.048 -07 000000442 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:32.048 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:34:32.048 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:34:32.048 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:34:32.048 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:34:32.058 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:34:32.058 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:34:32.058 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:34:32.058 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:34:32.068 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:34:32.068 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:34:32.068 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:34:32.068 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:34:32.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28291 150\n [Camera]
17-03-17 17:34:32.268 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:34:32.648 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.0344,
17-03-17 17:34:32.658 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:34:32.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:34:32.658 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:32.658 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:32.658 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) start.
17-03-17 17:34:32.658 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:34:32.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:34:32.658 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:32.658 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:32.658 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:34:32.848 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28291 775
17-03-17 17:34:32.998 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:34:33.038 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:34:33.038 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 17:34:33.038 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:33.138 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1137380112, 0x0, 391868352) end. Duration was 482 ms.
17-03-17 17:34:33.138 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 482 ms.
17-03-17 17:34:33.138 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:33.148 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 111 ms.
17-03-17 17:34:33.148 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:34:33.148 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 488 ms.
17-03-17 17:34:33.148 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 491 ms.
17-03-17 17:34:33.188 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:34:33.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:34:33.188 -07 000000442 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:33.188 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:34:33.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:34:33.188 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:33.188 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:33.188 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:34:33.198 -07 000000442 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:33.198 -07 000000442 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) start.
17-03-17 17:34:33.378 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:34:33.378 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:34:33.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28291 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-17 17:34:33.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:34:33.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5205078125, Z-Position -0.128713373068275. ------
17-03-17 17:34:33.388 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:33.388 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13479 mm
17-03-17 17:34:33.388 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:34:33.388 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:33.388 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 29445, sync = True, waitForSettling = False)
17-03-17 17:34:33.388 -07 000000409 INF: Z Motor: Moving to -0.134791 mm, started at -0.128713 mm, distance = -6.08 um
17-03-17 17:34:33.388 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 17:34:33.388 -07 000000627 INF: Y Motor: Moving to 72.3626 mm, started at 71.5205 mm, delta = 0.8421 mm
17-03-17 17:34:33.398 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:34:33.398 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:33.398 -07 000000476 INF: FPGA: Recv YRDPOS 146474
17-03-17 17:34:33.408 -07 000000409 INF: FPGA: Xmit ZDACW 29445\n [Z Motor]
17-03-17 17:34:33.408 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:34:33.408 -07 000000627 INF: Y Motor: Encoder = 146474 = motor step 114432.8 = 71.5205 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:33.408 -07 000000627 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:34:33.408 -07 000000627 INF: Y Motor: Moving 1347 steps-25
17-03-17 17:34:33.408 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 17:34:33.418 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:34:33.418 -07 000000409 INF: FPGA: 'ZDACW 29445' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 17:34:33.428 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:34:33.438 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:33.438 -07 000000478 INF: FPGA: Recv ZDACR 29445
17-03-17 17:34:33.448 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:34:33.448 -07 000000409 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 17:34:33.568 -07 000000442 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 17:34:33.568 -07 000000442 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 17:34:33.568 -07 000000442 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:33.568 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:34:33.568 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 17:34:33.568 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:33.578 -07 000000442 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:33.578 -07 000000442 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 17:34:33.578 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:33.578 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:34:33.618 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:34:33.618 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:34:33.798 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 17:34:33.798 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:34:33.828 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:33.838 -07 000000442 INF: FPGA: Recv YRDPOS 148174
17-03-17 17:34:33.838 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:34:33.838 -07 000000627 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:33.838 -07 000000627 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-17 17:34:33.838 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.842 mm, average velocity = 2.121 mm/sec
17-03-17 17:34:34.788 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:34.788 -07 000000476 INF: FPGA: Recv YRDPOS 148174
17-03-17 17:34:34.798 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:34.798 -07 000000627 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:34.808 -07 000000627 INF: Y Motor: After move to 72.362610, error = -0.012024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:34:34.808 -07 000000627 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:34:34.808 -07 000000627 INF: Y Motor: Moved to 72.3506 after 1420 ms (table move)
17-03-17 17:34:34.818 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134791 mm (DAC = 29445)
17-03-17 17:34:34.818 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:34.818 -07 000000478 INF: FPGA: Recv ZSGSRD 30278
17-03-17 17:34:34.828 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:34:34.828 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:34.828 -07 000000438 INF: FPGA: Recv ZSGSRD 30275
17-03-17 17:34:34.838 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:34.838 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:34.838 -07 000000627 INF: FPGA: Recv ZSGSRD 30272
17-03-17 17:34:34.848 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:34.848 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:34.848 -07 000000409 INF: FPGA: Recv ZSGSRD 30270
17-03-17 17:34:34.858 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:34.858 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:34.858 -07 000000626 INF: FPGA: Recv ZSGSRD 30273
17-03-17 17:34:34.868 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:34.868 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:34.868 -07 000000438 INF: FPGA: Recv ZSGSRD 30267
17-03-17 17:34:34.878 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:34.878 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:34.878 -07 000000627 INF: FPGA: Recv ZSGSRD 30271
17-03-17 17:34:34.888 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:34.888 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:34.888 -07 000000442 INF: FPGA: Recv ZSGSRD 30271
17-03-17 17:34:34.898 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:34.898 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:34.898 -07 000000475 INF: FPGA: Recv ZSGSRD 30272
17-03-17 17:34:34.908 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:34.908 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:34.908 -07 000000438 INF: FPGA: Recv ZSGSRD 30271
17-03-17 17:34:34.918 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:34.918 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:34.918 -07 000000627 INF: FPGA: Recv ZPIEZORD 26109
17-03-17 17:34:34.928 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:34.928 -07 000000459 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.493 V. Piezo Error = -9.2 V.
17-03-17 17:34:34.928 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30272 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30272 (-134.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30267 (-134.0 uncal um), Max = 30278 (-134.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:34:34.928 -07 000000459 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30272, posNoise = 6, negNoise = 5
17-03-17 17:34:34.928 -07 000000459 INF: Z Motor: After move to -0.134791, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:34.928 -07 000000459 INF: Z Motor: Settle wait time = 1424 ms, measure time = 108 ms (allowed 150 ms), total time = 1532 ms
17-03-17 17:34:34.928 -07 000000459 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:34:34.978 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 17:34:34.978 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:34:34.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:34.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:34.978 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:34.978 -07 000000442 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:34.978 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:34:34.978 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:34.978 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:34:34.978 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:34:34.988 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:34:34.988 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:34:34.998 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:34:34.998 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:34:34.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:34:35.048 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:34:35.248 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:34:35.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:34:35.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:34:35.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:34:35.288 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:34:35.288 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 17:34:35.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 17:34:35.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:34:35.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:35.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:34:35.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:34:35.388 -07 000000626 INF: Autofocus start
17-03-17 17:34:35.388 -07 000000626 INF: MeasureProfile start
17-03-17 17:34:35.388 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:35.388 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:35.398 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:34:35.398 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:34:35.398 -07 000000626 INF: MeasureProfile done
17-03-17 17:34:35.398 -07 000000626 INF: X=-31  Z correction [um]=-0.1543054
17-03-17 17:34:35.398 -07 000000626 INF: Autofocus finished
17-03-17 17:34:35.598 -07 000000442 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:34:35.598 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:34:35.598 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3505859375, Z-position -0.134797101966523. ----------
17-03-17 17:34:35.608 -07 000000610 INF: Cycle	2	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:34:35.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27924, sync = True, waitForSettling = True)
17-03-17 17:34:35.608 -07 000000610 INF: Z Motor: Moving to -0.127828 mm, started at -0.134797 mm, distance = 6.97 um
17-03-17 17:34:35.608 -07 000000610 INF: FPGA: Xmit ZDACW 27924\n [Z Motor]
17-03-17 17:34:35.608 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 17:34:35.618 -07 000000610 INF: FPGA: 'ZDACW 27924' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:34:35.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:35.618 -07 000000442 INF: FPGA: Recv ZDACR 27924
17-03-17 17:34:35.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:35.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:34:35.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:35.778 -07 000000442 INF: FPGA: Recv ZSGSRD 29189
17-03-17 17:34:35.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:35.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:35.788 -07 000000409 INF: FPGA: Recv ZSGSRD 29190
17-03-17 17:34:35.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:35.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:35.798 -07 000000627 INF: FPGA: Recv ZSGSRD 29188
17-03-17 17:34:35.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:35.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:35.808 -07 000000459 INF: FPGA: Recv ZSGSRD 29183
17-03-17 17:34:35.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:35.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:35.818 -07 000000478 INF: FPGA: Recv ZSGSRD 29192
17-03-17 17:34:35.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:35.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:35.828 -07 000000478 INF: FPGA: Recv ZSGSRD 29182
17-03-17 17:34:35.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:35.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:35.838 -07 000000459 INF: FPGA: Recv ZSGSRD 29187
17-03-17 17:34:35.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:35.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:35.848 -07 000000476 INF: FPGA: Recv ZSGSRD 29185
17-03-17 17:34:35.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:35.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:35.858 -07 000000475 INF: FPGA: Recv ZSGSRD 29193
17-03-17 17:34:35.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:35.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:35.868 -07 000000442 INF: FPGA: Recv ZSGSRD 29190
17-03-17 17:34:35.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:35.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:35.878 -07 000000475 INF: FPGA: Recv ZPIEZORD 24722
17-03-17 17:34:35.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:35.888 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.261 V. Piezo Error = -9.8 V.
17-03-17 17:34:35.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29188 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29188 (-127.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29182 (-127.0 uncal um), Max = 29193 (-127.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:34:35.888 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29188, posNoise = 5, negNoise = 6
17-03-17 17:34:35.888 -07 000000610 INF: Z Motor: After move to -0.127828, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:35.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:34:35.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:35.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:35.888 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:35.888 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:35.888 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:34:35.888 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:35.888 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:34:35.888 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:34:35.888 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:34:35.888 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:34:35.888 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:34:35.888 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:34:35.898 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:34:35.898 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:34:35.898 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:34:35.898 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:34:35.908 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:34:35.908 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:34:35.908 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:34:35.908 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:34:35.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28101 150\n [Camera]
17-03-17 17:34:36.108 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:34:36.498 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:34:36.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:34:36.498 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:36.498 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:36.498 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 17:34:36.498 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:34:36.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:34:36.498 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:36.498 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:36.498 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 17:34:36.508 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:34:36.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:34:36.688 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28101 775
17-03-17 17:34:36.838 -07 000000442 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:34:36.878 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:34:36.878 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:34:36.878 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:36.878 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:34:36.878 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:34:36.878 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:36.878 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:34:36.878 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:34:36.878 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:36.888 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:34:37.028 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:34:37.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:34:37.028 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:37.028 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:37.028 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:34:37.028 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:34:37.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:34:37.028 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:37.028 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:37.028 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:34:37.218 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:34:37.218 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:34:37.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28101 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:34:37.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:34:37.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3505859375, Z-Position -0.127833256004854. ------
17-03-17 17:34:37.228 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:37.228 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13455 mm
17-03-17 17:34:37.228 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:34:37.228 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 17:34:37.228 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:37.228 -07 000000438 INF: Y Motor: Moving to 73.1926 mm, started at 72.3506 mm, delta = 0.8420 mm
17-03-17 17:34:37.228 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 29393, sync = True, waitForSettling = False)
17-03-17 17:34:37.228 -07 000000409 INF: Z Motor: Moving to -0.134553 mm, started at -0.127833 mm, distance = -6.72 um
17-03-17 17:34:37.238 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:34:37.238 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:37.238 -07 000000608 INF: FPGA: Recv YRDPOS 148174
17-03-17 17:34:37.248 -07 000000409 INF: FPGA: Xmit ZDACW 29393\n [Z Motor]
17-03-17 17:34:37.248 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:34:37.248 -07 000000438 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:37.248 -07 000000438 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:34:37.248 -07 000000438 INF: Y Motor: Moving 1347 steps-25
17-03-17 17:34:37.248 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:34:37.258 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:34:37.258 -07 000000409 INF: FPGA: 'ZDACW 29393' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 17:34:37.268 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:34:37.278 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:37.278 -07 000000475 INF: FPGA: Recv ZDACR 29393
17-03-17 17:34:37.288 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:34:37.288 -07 000000409 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 17:34:37.408 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:34:37.408 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:34:37.408 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:37.408 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:34:37.408 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:34:37.408 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:37.418 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:37.418 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:34:37.418 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:34:37.418 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:34:37.458 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:34:37.458 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:34:37.638 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 17:34:37.638 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:34:37.668 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:37.678 -07 000000626 INF: FPGA: Recv YRDPOS 149867
17-03-17 17:34:37.678 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:34:37.678 -07 000000438 INF: Y Motor: Encoder = 149867 = motor step 117083.6 = 73.1772 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:37.678 -07 000000438 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 17:34:37.678 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.842 mm, average velocity = 2.121 mm/sec
17-03-17 17:34:38.008 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.03576,
17-03-17 17:34:38.628 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:38.628 -07 000000618 INF: FPGA: Recv YRDPOS 149867
17-03-17 17:34:38.638 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:38.638 -07 000000438 INF: Y Motor: Encoder = 149867 = motor step 117083.6 = 73.1772 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:38.648 -07 000000438 INF: Y Motor: After move to 73.192604, error = -0.015358, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:34:38.648 -07 000000438 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:34:38.648 -07 000000438 INF: Y Motor: Moved to 73.1772 after 1423 ms (table move)
17-03-17 17:34:38.658 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134553 mm (DAC = 29393)
17-03-17 17:34:38.658 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:38.658 -07 000000618 INF: FPGA: Recv ZSGSRD 30228
17-03-17 17:34:38.668 -07 000000478 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:34:38.668 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:38.668 -07 000000476 INF: FPGA: Recv ZSGSRD 30225
17-03-17 17:34:38.678 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:38.678 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:38.678 -07 000000551 INF: FPGA: Recv ZSGSRD 30225
17-03-17 17:34:38.688 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:38.688 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:38.688 -07 000000631 INF: FPGA: Recv ZSGSRD 30234
17-03-17 17:34:38.698 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:38.698 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:38.698 -07 000000476 INF: FPGA: Recv ZSGSRD 30231
17-03-17 17:34:38.708 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:38.708 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:38.708 -07 000000438 INF: FPGA: Recv ZSGSRD 30234
17-03-17 17:34:38.718 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:38.718 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:38.718 -07 000000476 INF: FPGA: Recv ZSGSRD 30239
17-03-17 17:34:38.728 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:38.728 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:38.728 -07 000000438 INF: FPGA: Recv ZSGSRD 30244
17-03-17 17:34:38.738 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:38.738 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:38.738 -07 000000561 INF: FPGA: Recv ZSGSRD 30233
17-03-17 17:34:38.748 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:38.748 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:38.748 -07 000000438 INF: FPGA: Recv ZSGSRD 30227
17-03-17 17:34:38.758 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:38.758 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:38.758 -07 000000561 INF: FPGA: Recv ZPIEZORD 26084
17-03-17 17:34:38.768 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:38.768 -07 000000478 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.485 V. Piezo Error = -9.1 V.
17-03-17 17:34:38.768 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30232 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30232 (-133.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30225 (-133.7 uncal um), Max = 30244 (-133.8 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:34:38.768 -07 000000478 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30232, posNoise = 12, negNoise = 7
17-03-17 17:34:38.768 -07 000000478 INF: Z Motor: After move to -0.134553, error = 0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:38.768 -07 000000478 INF: Z Motor: Settle wait time = 1424 ms, measure time = 108 ms (allowed 150 ms), total time = 1532 ms
17-03-17 17:34:38.768 -07 000000478 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:34:38.818 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 17:34:38.818 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:34:38.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:38.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:38.818 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:38.818 -07 000000442 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:38.818 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:34:38.818 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:38.818 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:34:38.818 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:34:38.828 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:34:38.828 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:34:38.838 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:34:38.838 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 17:34:38.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:34:38.888 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:34:39.088 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:34:39.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:34:39.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:34:39.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) start.
17-03-17 17:34:39.128 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:34:39.128 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 17:34:39.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 17:34:39.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:34:39.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:39.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:34:39.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 17:34:39.228 -07 000000618 INF: Autofocus start
17-03-17 17:34:39.228 -07 000000618 INF: MeasureProfile start
17-03-17 17:34:39.228 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:39.228 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:39.238 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:34:39.238 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:34:39.238 -07 000000618 INF: MeasureProfile done
17-03-17 17:34:39.238 -07 000000618 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 17:34:39.238 -07 000000618 INF: Autofocus finished
17-03-17 17:34:39.438 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:34:39.438 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:34:39.438 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17724609375, Z-position -0.134540133480852. ----------
17-03-17 17:34:39.438 -07 000000610 INF: Cycle	2	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:34:39.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27871, sync = True, waitForSettling = True)
17-03-17 17:34:39.448 -07 000000610 INF: Z Motor: Moving to -0.127585 mm, started at -0.134540 mm, distance = 6.95 um
17-03-17 17:34:39.448 -07 000000610 INF: FPGA: Xmit ZDACW 27871\n [Z Motor]
17-03-17 17:34:39.448 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:34:39.458 -07 000000610 INF: FPGA: 'ZDACW 27871' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:34:39.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:39.458 -07 000000442 INF: FPGA: Recv ZDACR 27871
17-03-17 17:34:39.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:39.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:34:39.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:39.618 -07 000000618 INF: FPGA: Recv ZSGSRD 29150
17-03-17 17:34:39.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:39.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:39.628 -07 000000459 INF: FPGA: Recv ZSGSRD 29147
17-03-17 17:34:39.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:39.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:39.638 -07 000000551 INF: FPGA: Recv ZSGSRD 29146
17-03-17 17:34:39.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:39.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:39.648 -07 000000478 INF: FPGA: Recv ZSGSRD 29155
17-03-17 17:34:39.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:39.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:39.658 -07 000000475 INF: FPGA: Recv ZSGSRD 29148
17-03-17 17:34:39.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:39.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:39.668 -07 000000626 INF: FPGA: Recv ZSGSRD 29148
17-03-17 17:34:39.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:39.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:39.678 -07 000000561 INF: FPGA: Recv ZSGSRD 29156
17-03-17 17:34:39.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:39.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:39.688 -07 000000626 INF: FPGA: Recv ZSGSRD 29148
17-03-17 17:34:39.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:39.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:39.698 -07 000000409 INF: FPGA: Recv ZSGSRD 29150
17-03-17 17:34:39.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:39.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:39.708 -07 000000476 INF: FPGA: Recv ZSGSRD 29148
17-03-17 17:34:39.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:39.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:39.718 -07 000000459 INF: FPGA: Recv ZPIEZORD 24702
17-03-17 17:34:39.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:39.728 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.253 V. Piezo Error = -9.8 V.
17-03-17 17:34:39.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29150 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29148 (-126.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29146 (-126.8 uncal um), Max = 29156 (-126.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:34:39.728 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29150, posNoise = 6, negNoise = 4
17-03-17 17:34:39.728 -07 000000610 INF: Z Motor: After move to -0.127585, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:39.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:34:39.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:39.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:39.728 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:34:39.728 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:34:39.728 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:39.728 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:39.728 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:34:39.728 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:39.728 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:34:39.728 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:34:39.728 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:34:39.728 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:34:39.738 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:34:39.738 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:34:39.738 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:34:39.738 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:34:39.748 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:34:39.748 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:34:39.748 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:34:39.748 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:34:39.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28048 150\n [Camera]
17-03-17 17:34:39.948 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:34:40.338 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:34:40.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:34:40.338 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:40.338 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:40.338 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 17:34:40.338 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:34:40.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:34:40.338 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:40.338 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:40.338 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 17:34:40.528 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28048 775
17-03-17 17:34:40.678 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:34:40.718 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:34:40.718 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 17:34:40.718 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:40.718 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:34:40.718 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:34:40.718 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:40.718 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:40.718 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:40.718 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:34:40.728 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:34:40.868 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:34:40.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:34:40.868 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:40.868 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:40.868 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 17:34:40.878 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:34:40.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:34:40.878 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:40.878 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:40.878 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 17:34:41.058 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:34:41.058 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:34:41.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28048 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-17 17:34:41.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:34:41.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17724609375, Z-Position -0.127589135943467. ------
17-03-17 17:34:41.068 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:41.068 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13385 mm
17-03-17 17:34:41.068 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:34:41.068 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 17:34:41.068 -07 000000409 INF: Y Motor: Moving to 74.0226 mm, started at 73.1772 mm, delta = 0.8454 mm
17-03-17 17:34:41.068 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:41.068 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 29239, sync = True, waitForSettling = False)
17-03-17 17:34:41.068 -07 000000476 INF: Z Motor: Moving to -0.133848 mm, started at -0.127589 mm, distance = -6.26 um
17-03-17 17:34:41.078 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:34:41.078 -07 000000476 INF: FPGA: Xmit ZDACW 29239\n [Z Motor]
17-03-17 17:34:41.078 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 17:34:41.088 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:41.088 -07 000000476 INF: FPGA: 'ZDACW 29239' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:41.088 -07 000000626 INF: FPGA: Recv YRDPOS 149867
17-03-17 17:34:41.098 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 17:34:41.098 -07 000000409 INF: Y Motor: Encoder = 149867 = motor step 117083.6 = 73.1772 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:41.098 -07 000000409 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:34:41.098 -07 000000409 INF: Y Motor: Moving 1353 steps-31
17-03-17 17:34:41.098 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:34:41.108 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:41.108 -07 000000626 INF: FPGA: Recv ZDACR 29239
17-03-17 17:34:41.118 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:34:41.118 -07 000000476 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 17:34:41.118 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:34:41.258 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:34:41.258 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:34:41.258 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:34:41.258 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:41.258 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:34:41.258 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:41.258 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:41.258 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 17:34:41.258 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 17:34:41.268 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:34:41.298 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:34:41.298 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 17:34:41.488 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 17:34:41.488 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 17:34:41.518 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:34:41.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:34:41.518 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:41.518 -07 000000626 INF: FPGA: Recv YRDPOS 151571
17-03-17 17:34:41.528 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:34:41.528 -07 000000409 INF: Y Motor: Encoder = 151571 = motor step 118414.8 = 74.0093 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:41.528 -07 000000409 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:34:41.528 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.124 mm/sec
17-03-17 17:34:42.478 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:42.478 -07 000000626 INF: FPGA: Recv YRDPOS 151572
17-03-17 17:34:42.488 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:42.488 -07 000000409 INF: Y Motor: Encoder = 151572 = motor step 118415.6 = 74.0098 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:42.498 -07 000000409 INF: Y Motor: After move to 74.022606, error = -0.012840, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:34:42.498 -07 000000409 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:34:42.498 -07 000000409 INF: Y Motor: Moved to 74.0098 after 1428 ms (table move)
17-03-17 17:34:42.498 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133848 mm (DAC = 29239)
17-03-17 17:34:42.498 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:42.508 -07 000000409 INF: FPGA: Recv ZSGSRD 30133
17-03-17 17:34:42.508 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:34:42.508 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:42.508 -07 000000382 INF: FPGA: Recv ZSGSRD 30130
17-03-17 17:34:42.518 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:34:42.518 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:42.518 -07 000000459 INF: FPGA: Recv ZSGSRD 30120
17-03-17 17:34:42.528 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:42.528 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:42.528 -07 000000618 INF: FPGA: Recv ZSGSRD 30125
17-03-17 17:34:42.538 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:42.538 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:42.538 -07 000000382 INF: FPGA: Recv ZSGSRD 30124
17-03-17 17:34:42.548 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:42.548 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:42.548 -07 000000409 INF: FPGA: Recv ZSGSRD 30128
17-03-17 17:34:42.558 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:42.558 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:42.558 -07 000000459 INF: FPGA: Recv ZSGSRD 30131
17-03-17 17:34:42.568 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:42.568 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:42.568 -07 000000476 INF: FPGA: Recv ZSGSRD 30127
17-03-17 17:34:42.578 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:42.578 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:42.578 -07 000000627 INF: FPGA: Recv ZSGSRD 30130
17-03-17 17:34:42.588 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:42.588 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:42.588 -07 000000618 INF: FPGA: Recv ZSGSRD 30127
17-03-17 17:34:42.598 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:42.598 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:42.598 -07 000000382 INF: FPGA: Recv ZPIEZORD 26010
17-03-17 17:34:42.608 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:42.608 -07 000000438 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.462 V. Piezo Error = -9.1 V.
17-03-17 17:34:42.608 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.8 um, Read 10 ADC samples: Avg = 30128 (-133.1 uncal um), Error = 0.8 uncal um, Median = 30128 (-133.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30120 (-133.0 uncal um), Max = 30133 (-133.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:34:42.608 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30128, posNoise = 5, negNoise = 8
17-03-17 17:34:42.608 -07 000000438 INF: Z Motor: After move to -0.133848, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:42.608 -07 000000438 INF: Z Motor: Settle wait time = 1429 ms, measure time = 102 ms (allowed 150 ms), total time = 1531 ms
17-03-17 17:34:42.608 -07 000000438 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 17:34:42.658 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 17:34:42.658 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:34:42.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:42.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:42.658 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:42.658 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:42.658 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:34:42.658 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:42.658 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:34:42.668 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:34:42.668 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:34:42.668 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:34:42.668 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:34:42.668 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:34:42.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:34:42.718 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:34:42.918 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:34:42.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:34:42.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:34:42.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 17:34:42.958 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:34:42.958 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 17:34:42.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 17:34:43.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:34:43.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:43.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:34:43.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:34:43.058 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:43.058 -07 000000626 INF: Autofocus start
17-03-17 17:34:43.058 -07 000000626 INF: MeasureProfile start
17-03-17 17:34:43.058 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:43.068 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:34:43.068 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:34:43.068 -07 000000626 INF: MeasureProfile done
17-03-17 17:34:43.068 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:34:43.068 -07 000000626 INF: Autofocus finished
17-03-17 17:34:43.268 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:34:43.268 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:34:43.268 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.009765625, Z-position -0.133872015418109. ----------
17-03-17 17:34:43.268 -07 000000610 INF: Cycle	2	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:34:43.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27763, sync = True, waitForSettling = True)
17-03-17 17:34:43.278 -07 000000610 INF: Z Motor: Moving to -0.127091 mm, started at -0.133872 mm, distance = 6.78 um
17-03-17 17:34:43.278 -07 000000610 INF: FPGA: Xmit ZDACW 27763\n [Z Motor]
17-03-17 17:34:43.278 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 17:34:43.288 -07 000000610 INF: FPGA: 'ZDACW 27763' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:34:43.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:43.288 -07 000000618 INF: FPGA: Recv ZDACR 27763
17-03-17 17:34:43.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:43.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:34:43.368 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.049392,
17-03-17 17:34:43.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:43.448 -07 000000382 INF: FPGA: Recv ZSGSRD 29075
17-03-17 17:34:43.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:43.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:43.458 -07 000000627 INF: FPGA: Recv ZSGSRD 29078
17-03-17 17:34:43.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:43.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:43.468 -07 000000618 INF: FPGA: Recv ZSGSRD 29074
17-03-17 17:34:43.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:43.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:43.478 -07 000000626 INF: FPGA: Recv ZSGSRD 29076
17-03-17 17:34:43.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:43.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:43.488 -07 000000459 INF: FPGA: Recv ZSGSRD 29072
17-03-17 17:34:43.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:43.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:43.498 -07 000000627 INF: FPGA: Recv ZSGSRD 29076
17-03-17 17:34:43.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:43.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:43.508 -07 000000618 INF: FPGA: Recv ZSGSRD 29073
17-03-17 17:34:43.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:43.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:43.518 -07 000000476 INF: FPGA: Recv ZSGSRD 29070
17-03-17 17:34:43.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:43.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:43.528 -07 000000382 INF: FPGA: Recv ZSGSRD 29076
17-03-17 17:34:43.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:43.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:43.538 -07 000000438 INF: FPGA: Recv ZSGSRD 29079
17-03-17 17:34:43.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:43.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:43.548 -07 000000476 INF: FPGA: Recv ZPIEZORD 24624
17-03-17 17:34:43.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:43.558 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.236 V. Piezo Error = -9.8 V.
17-03-17 17:34:43.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.1 um, Read 10 ADC samples: Avg = 29075 (-126.3 uncal um), Error = 0.8 uncal um, Median = 29076 (-126.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29070 (-126.3 uncal um), Max = 29079 (-126.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:34:43.558 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29075, posNoise = 4, negNoise = 5
17-03-17 17:34:43.558 -07 000000610 INF: Z Motor: After move to -0.127091, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:43.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:34:43.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:43.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:43.558 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:43.558 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:34:43.558 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:43.558 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:43.558 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:34:43.558 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:34:43.558 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:34:43.558 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:34:43.558 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:34:43.558 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:34:43.558 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:34:43.558 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:34:43.558 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:34:43.558 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:34:43.568 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:34:43.568 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:34:43.578 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:34:43.578 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:34:43.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27940 150\n [Camera]
17-03-17 17:34:43.778 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:34:44.168 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:34:44.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:34:44.168 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:44.168 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:44.168 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 17:34:44.168 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:34:44.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:34:44.168 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:44.168 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:44.168 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 17:34:44.358 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27940 775
17-03-17 17:34:44.508 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:34:44.548 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:34:44.548 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 17:34:44.548 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:44.548 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:34:44.548 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:34:44.548 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:44.548 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:44.548 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:44.548 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:34:44.558 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 17:34:44.698 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:34:44.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:34:44.698 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:44.698 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:44.698 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 17:34:44.698 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:34:44.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:34:44.698 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:44.698 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:44.698 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 17:34:44.888 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:34:44.888 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:34:44.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27940 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:34:44.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:34:44.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.009765625, Z-Position -0.127107320032835. ------
17-03-17 17:34:44.898 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:44.898 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13335 mm
17-03-17 17:34:44.898 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:34:44.898 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:44.898 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 29131, sync = True, waitForSettling = False)
17-03-17 17:34:44.898 -07 000000459 INF: Z Motor: Moving to -0.133353 mm, started at -0.127107 mm, distance = -6.25 um
17-03-17 17:34:44.898 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 17:34:44.898 -07 000000476 INF: Y Motor: Moving to 74.8526 mm, started at 74.0098 mm, delta = 0.8428 mm
17-03-17 17:34:44.908 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:34:44.908 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:44.908 -07 000000438 INF: FPGA: Recv YRDPOS 151572
17-03-17 17:34:44.918 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:34:44.918 -07 000000476 INF: Y Motor: Encoder = 151572 = motor step 118415.6 = 74.0098 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:44.918 -07 000000476 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:34:44.918 -07 000000476 INF: Y Motor: Moving 1349 steps-27
17-03-17 17:34:44.918 -07 000000459 INF: FPGA: Xmit ZDACW 29131\n [Z Motor]
17-03-17 17:34:44.918 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:34:44.928 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:34:44.928 -07 000000459 INF: FPGA: 'ZDACW 29131' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 17:34:44.938 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:34:44.948 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:44.948 -07 000000627 INF: FPGA: Recv ZDACR 29131
17-03-17 17:34:44.958 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:34:44.958 -07 000000459 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 17:34:45.078 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:34:45.078 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:34:45.078 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:45.078 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:34:45.078 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:34:45.078 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:45.088 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:34:45.088 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:34:45.088 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:34:45.088 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:34:45.128 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:34:45.128 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:34:45.308 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 17:34:45.308 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-17 17:34:45.328 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:45.338 -07 000000438 INF: FPGA: Recv YRDPOS 153258
17-03-17 17:34:45.338 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:34:45.338 -07 000000476 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:45.338 -07 000000476 INF: Y Motor: Position error before settling (table move) = -40 encoder counts (-0.020 mm)
17-03-17 17:34:45.338 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.843 mm, average velocity = 2.112 mm/sec
17-03-17 17:34:46.288 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:34:46.288 -07 000000459 INF: FPGA: Recv YRDPOS 153259
17-03-17 17:34:46.298 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:34:46.298 -07 000000476 INF: Y Motor: Encoder = 153259 = motor step 119733.6 = 74.8335 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:34:46.308 -07 000000476 INF: Y Motor: After move to 74.852608, error = -0.019112, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:34:46.308 -07 000000476 INF: Y Motor: Position error after settling (table move) = -39 encoder counts (-0.019 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:34:46.308 -07 000000476 INF: Y Motor: Moved to 74.8335 after 1406 ms (table move)
17-03-17 17:34:46.308 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133353 mm (DAC = 29131)
17-03-17 17:34:46.308 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:46.318 -07 000000438 INF: FPGA: Recv ZSGSRD 30051
17-03-17 17:34:46.318 -07 000000382 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 17:34:46.318 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:46.318 -07 000000462 INF: FPGA: Recv ZSGSRD 30045
17-03-17 17:34:46.328 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:34:46.328 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:46.328 -07 000000438 INF: FPGA: Recv ZSGSRD 30049
17-03-17 17:34:46.338 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:46.338 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:46.338 -07 000000623 INF: FPGA: Recv ZSGSRD 30046
17-03-17 17:34:46.348 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:46.348 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:46.348 -07 000000623 INF: FPGA: Recv ZSGSRD 30041
17-03-17 17:34:46.358 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:46.358 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:46.358 -07 000000618 INF: FPGA: Recv ZSGSRD 30041
17-03-17 17:34:46.368 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:46.368 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:46.368 -07 000000462 INF: FPGA: Recv ZSGSRD 30050
17-03-17 17:34:46.378 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:46.378 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:46.378 -07 000000627 INF: FPGA: Recv ZSGSRD 30051
17-03-17 17:34:46.388 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:46.388 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:46.388 -07 000000618 INF: FPGA: Recv ZSGSRD 30053
17-03-17 17:34:46.398 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:46.398 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:46.398 -07 000000462 INF: FPGA: Recv ZSGSRD 30055
17-03-17 17:34:46.408 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:46.408 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:46.408 -07 000000438 INF: FPGA: Recv ZPIEZORD 25875
17-03-17 17:34:46.418 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:46.418 -07 000000382 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.445 V. Piezo Error = -9.2 V.
17-03-17 17:34:46.418 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30048 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30050 (-132.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30041 (-132.5 uncal um), Max = 30055 (-132.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:34:46.418 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30048, posNoise = 7, negNoise = 7
17-03-17 17:34:46.418 -07 000000382 INF: Z Motor: After move to -0.133353, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:46.418 -07 000000382 INF: Z Motor: Settle wait time = 1410 ms, measure time = 103 ms (allowed 150 ms), total time = 1513 ms
17-03-17 17:34:46.418 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 17:34:46.468 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1565 ms
17-03-17 17:34:46.468 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:34:46.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:46.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:46.468 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:46.468 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:46.468 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:34:46.468 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:46.468 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:34:46.468 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:34:46.478 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:34:46.478 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:34:46.488 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:34:46.488 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:34:46.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:34:46.508 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:34:46.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 1. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=29, R2=35, Total=64. Warn if over 250 bubbles per interval.
17-03-17 17:34:46.538 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:34:46.738 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:34:46.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:34:46.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:34:46.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 17:34:46.778 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:34:46.778 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 17:34:46.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 17:34:46.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:34:46.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:46.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:34:46.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:34:46.878 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:34:46.878 -07 000000438 INF: Autofocus start
17-03-17 17:34:46.878 -07 000000438 INF: MeasureProfile start
17-03-17 17:34:46.878 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:34:46.888 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:34:46.888 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:34:46.888 -07 000000438 INF: MeasureProfile done
17-03-17 17:34:46.888 -07 000000438 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:34:46.888 -07 000000438 INF: Autofocus finished
17-03-17 17:34:47.088 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:34:47.088 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:34:47.088 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83349609375, Z-position -0.133358078446768. ----------
17-03-17 17:34:47.088 -07 000000610 INF: Cycle	2	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:34:47.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27655, sync = True, waitForSettling = True)
17-03-17 17:34:47.098 -07 000000610 INF: Z Motor: Moving to -0.126596 mm, started at -0.133358 mm, distance = 6.76 um
17-03-17 17:34:47.098 -07 000000610 INF: FPGA: Xmit ZDACW 27655\n [Z Motor]
17-03-17 17:34:47.098 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 17:34:47.108 -07 000000610 INF: FPGA: 'ZDACW 27655' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:34:47.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:34:47.108 -07 000000618 INF: FPGA: Recv ZDACR 27655
17-03-17 17:34:47.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:47.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:34:47.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:47.268 -07 000000382 INF: FPGA: Recv ZSGSRD 29001
17-03-17 17:34:47.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:47.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:47.278 -07 000000627 INF: FPGA: Recv ZSGSRD 28997
17-03-17 17:34:47.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:47.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:47.288 -07 000000382 INF: FPGA: Recv ZSGSRD 28994
17-03-17 17:34:47.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:47.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:47.298 -07 000000627 INF: FPGA: Recv ZSGSRD 28991
17-03-17 17:34:47.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:47.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:47.308 -07 000000382 INF: FPGA: Recv ZSGSRD 28992
17-03-17 17:34:47.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:47.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:47.318 -07 000000462 INF: FPGA: Recv ZSGSRD 29002
17-03-17 17:34:47.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:47.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:47.328 -07 000000623 INF: FPGA: Recv ZSGSRD 28992
17-03-17 17:34:47.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:47.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:47.338 -07 000000462 INF: FPGA: Recv ZSGSRD 29002
17-03-17 17:34:47.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:47.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:47.348 -07 000000438 INF: FPGA: Recv ZSGSRD 28993
17-03-17 17:34:47.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:47.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:34:47.358 -07 000000618 INF: FPGA: Recv ZSGSRD 28999
17-03-17 17:34:47.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:34:47.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:34:47.378 -07 000000438 INF: FPGA: Recv ZPIEZORD 24571
17-03-17 17:34:47.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:34:47.388 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.220 V. Piezo Error = -9.7 V.
17-03-17 17:34:47.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.6 um, Read 10 ADC samples: Avg = 28996 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28996 (-125.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 28991 (-125.8 uncal um), Max = 29002 (-125.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:34:47.388 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28996, posNoise = 6, negNoise = 5
17-03-17 17:34:47.388 -07 000000610 INF: Z Motor: After move to -0.126596, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:34:47.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 17:34:47.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:34:47.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:34:47.388 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:34:47.388 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:34:47.388 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:34:47.388 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:34:47.388 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:34:47.388 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:34:47.388 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:34:47.398 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:34:47.398 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:34:47.398 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:34:47.398 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:34:47.398 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:34:47.398 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:34:47.398 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:34:47.408 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:34:47.408 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:34:47.408 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:34:47.408 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:34:47.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27831 150\n [Camera]
17-03-17 17:34:47.618 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 17:34:48.008 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:34:48.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:34:48.008 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:48.008 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:48.008 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 17:34:48.008 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:34:48.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:34:48.008 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:48.008 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:48.008 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 17:34:48.198 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27831 775
17-03-17 17:34:48.348 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:34:48.378 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:34:48.378 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:34:48.378 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:34:48.378 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:48.378 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:34:48.378 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:48.388 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:34:48.388 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:34:48.388 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:34:48.398 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:34:48.538 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:34:48.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:34:48.538 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:34:48.668 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:34:48.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:34:48.668 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:34:48.668 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:34:48.668 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 17:34:48.678 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:34:48.678 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 17:34:48.728 -07 000000442 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.052111,
17-03-17 17:34:48.728 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:34:48.728 -07 000000442 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:34:48.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27831 150' command took 2 ms to send, 1302 ms to get response, and 1316 ms overall
17-03-17 17:34:49.048 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 17:34:49.048 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:34:49.048 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:49.048 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:34:49.048 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:34:49.048 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:34:49.048 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:34:49.058 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:34:49.058 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-17 17:34:49.058 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 17:34:49.058 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:34:49.098 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 17:34:49.098 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 17:34:49.138 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 17:34:49.148 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 17:34:49.148 -07 000000610 INF: Imaging Cycle 2: ScanTilesCommand Cycle 2 time end. Duration was 161915 ms.
17-03-17 17:34:49.148 -07 000000610 INF: =================== Cycle #2 ===================
17-03-17 17:34:49.148 -07 000000610 INF: ===================  ===================
17-03-17 17:34:49.148 -07 000000631 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 17:34:49.158 -07 000000382 INF: FPGA: Recv EXLED1ADCR 25
17-03-17 17:34:49.158 -07 000000631 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:34:49.158 -07 000000631 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-17 17:34:49.158 -07 000000631 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 2, FrontChillerTemperature: 4.052111, FrontChillerHeatSinkTemperature: 0.063343, AmbientTemperature: 18.62355, FlowCellCompartmentTemperature: 21.99981, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.38557, GreenLEDSensorTemperature: 26.50436, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-17 17:34:49.158 -07 000000610 WRN: Offset file 'D:\Illumina\MiSeqFGxTemp\170317_M03814_0172_000000000-B2K79\Data\Intensities\Offsets\offsets.txt' does not exist.
17-03-17 17:34:49.158 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.