17-03-17 19:44:36.168 -07 000000610 INF: =================== Cycle #30 ===================
17-03-17 19:44:36.168 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 19:44:36.168 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-17 19:44:36.168 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:36.178 -07 000000482 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:44:36.178 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:44:36.178 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:36.178 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 19:44:36.178 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 19:44:36.178 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 19:44:36.288 -07 000000618 INF: FPGA: Recv YMVTO 154377 872
17-03-17 19:44:36.288 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 115 ms overall
17-03-17 19:44:36.288 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 19:44:36.288 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (0.00%).
17-03-17 19:44:36.288 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.720 mm/sec
17-03-17 19:44:36.718 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:44:36.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=366, R2=388, Total=754. Warn if over 250 bubbles per interval.
17-03-17 19:44:37.958 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.973092,
17-03-17 19:44:39.288 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:44:39.288 -07 000000541 INF: FPGA: Recv YRDPOS 154382
17-03-17 19:44:39.298 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:44:39.298 -07 000000610 INF: Y Motor: Encoder = 154382 = motor step 120610.9 = 75.3818 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:44:39.308 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.001256, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:44:39.308 -07 000000610 INF: Y Motor: Position error after settling = 3 encoder counts (0.001 mm), Delta during settling = 5 counts (0.002 mm)
17-03-17 19:44:39.308 -07 000000610 INF: Y Motor: Moved to 75.3818 after 3141 ms
17-03-17 19:44:39.318 -07 000000610 INF: =================== Cycle #30, Flow Cell Temp 60° ===================
17-03-17 19:44:39.318 -07 000000610 INF: =================== Cycle #30, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 19:44:39.318 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 19:44:39.318 -07 000000569 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:44:39.328 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:44:39.328 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:44:39.328 -07 000000547 INF: FPGA: Recv TEC2EN 
17-03-17 19:44:39.338 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:44:39.338 -07 000000610 INF: =================== Cycle #30, Flow Cell Temp 60° ===================
17-03-17 19:44:39.338 -07 000000610 INF: =================== Cycle #30 ===================
17-03-17 19:44:39.338 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:44:39.338 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:44:39.368 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:44:39.368 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 19:44:39.368 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:44:39.668 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:44:39.688 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:44:39.688 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:44:39.738 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:44:39.758 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:44:39.758 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:44:39.858 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3) ===================
17-03-17 19:44:39.858 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:44:39.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:44:39.888 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:44:39.888 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:44:39.888 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:44:40.018 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:44:40.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:44:41.718 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-17 19:44:41.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=368, R2=388, Total=756. Warn if over 250 bubbles per interval.
17-03-17 19:44:43.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:44:43.218 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:44:43.318 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.979922,
17-03-17 19:44:43.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:44:43.668 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:44:44.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:44:44.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:44:44.118 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:44:44.118 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3) ===================
17-03-17 19:44:44.248 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:44:44.278 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:44:44.278 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:44:44.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:44:44.438 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:44:44.438 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:44:44.438 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:44:44.568 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:44:44.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:44:45.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:44:45.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:44:45.058 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:44:45.058 -07 000000610 INF: =================== Cycle #30 ===================
17-03-17 19:44:46.278 -07 000000610 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:44:46.278 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 19:44:46.278 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:44:46.298 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:44:46.298 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 19:44:46.298 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 19:44:46.438 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:44:46.458 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 19:44:46.458 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 19:44:46.508 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:44:46.528 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:44:46.528 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:44:46.628 -07 000000610 INF: =================== Cycle #30, Pumping Reagent CMS (4) ===================
17-03-17 19:44:46.628 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:44:46.628 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:44:46.658 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:44:46.658 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:44:46.658 -07 000000610 INF: =================== Cycle #30, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 19:44:46.718 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 11 R1 8
17-03-17 19:44:46.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=8, R2=11, Total=19. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=376, R2=399, Total=775. Warn if over 250 bubbles per interval.
17-03-17 19:44:46.788 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:44:46.828 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:44:48.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:44:48.298 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:44:48.678 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.007176,
17-03-17 19:44:48.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:44:48.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:44:48.748 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:44:48.748 -07 000000610 INF: =================== Cycle #30, Pumping Reagent CMS (4) ===================
17-03-17 19:44:48.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:44:48.908 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:44:48.908 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:44:49.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:44:49.068 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:44:49.068 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:44:49.068 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:44:49.198 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:44:49.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:44:49.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:44:49.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:44:49.688 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:44:49.688 -07 000000610 INF: =================== Cycle #30 ===================
17-03-17 19:44:50.908 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 19:44:50.908 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:44:50.908 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:44:50.928 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 19:44:50.928 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 19:44:50.928 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 19:44:51.078 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:44:51.098 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 19:44:51.098 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 19:44:51.148 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:44:51.168 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:44:51.168 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:44:51.268 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3) ===================
17-03-17 19:44:51.268 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:44:51.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:44:51.298 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:44:51.298 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:44:51.298 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:44:51.428 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:44:51.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:44:51.718 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 8 R1 10
17-03-17 19:44:51.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=10, R2=8, Total=18. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=386, R2=407, Total=793. Warn if over 250 bubbles per interval.
17-03-17 19:44:52.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:44:52.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:44:52.368 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:44:52.368 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3) ===================
17-03-17 19:44:52.498 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:44:52.528 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:44:52.528 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:44:52.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:44:52.688 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:44:52.688 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:44:52.688 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:44:52.818 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:44:52.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:44:53.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:44:53.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:44:53.308 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:44:53.308 -07 000000610 INF: =================== Cycle #30 ===================
17-03-17 19:44:53.308 -07 000000431 INF: WaitCommand(10000) start
17-03-17 19:44:53.308 -07 000000486 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:44:53.308 -07 000000486 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:44:54.038 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.988112,
17-03-17 19:44:54.528 -07 000000486 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:44:54.528 -07 000000486 INF: LanePump: Xmit /1?\r
17-03-17 19:44:54.558 -07 000000486 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:44:54.558 -07 000000486 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:44:54.688 -07 000000486 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:44:54.728 -07 000000486 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:44:56.258 -07 000000486 INF: LanePump: Xmit /1Q\r
17-03-17 19:44:56.288 -07 000000486 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:44:56.708 -07 000000486 INF: LanePump: Xmit /1Q\r
17-03-17 19:44:56.718 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 19:44:56.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=387, R2=408, Total=795. Warn if over 250 bubbles per interval.
17-03-17 19:44:56.738 -07 000000486 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:44:56.738 -07 000000486 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:44:56.738 -07 000000486 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:44:56.738 -07 000000486 INF: ===================  ===================
17-03-17 19:44:59.398 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.981281,
17-03-17 19:45:01.718 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:45:01.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=387, R2=408, Total=795. Warn if over 250 bubbles per interval.
17-03-17 19:45:03.318 -07 000000431 INF: WaitCommand(10000) end
17-03-17 19:45:03.318 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3) ===================
17-03-17 19:45:03.318 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 19:45:03.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:45:03.358 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:45:03.358 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:45:03.358 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:45:03.488 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 19:45:03.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:45:04.758 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.014009,
17-03-17 19:45:06.718 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 5
17-03-17 19:45:06.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=5, R2=1, Total=6. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=392, R2=409, Total=801. Warn if over 250 bubbles per interval.
17-03-17 19:45:09.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:45:09.688 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:45:10.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:45:10.118 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.011254,
17-03-17 19:45:10.138 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:45:10.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:45:10.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:45:11.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:45:11.038 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:45:11.458 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:45:11.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:45:11.488 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 19:45:11.488 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3) ===================
17-03-17 19:45:11.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:45:11.648 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:45:11.648 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:45:11.718 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 1
17-03-17 19:45:11.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=1, R2=7, Total=8. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=393, R2=416, Total=809. Warn if over 250 bubbles per interval.
17-03-17 19:45:11.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:45:11.808 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:45:11.808 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:45:11.808 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:45:11.938 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:45:11.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:45:12.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:45:12.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:45:12.428 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:45:12.428 -07 000000610 INF: =================== Cycle #30 ===================
17-03-17 19:45:13.648 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:45:13.648 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 19:45:13.648 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:45:13.668 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:45:13.668 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 19:45:13.668 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 19:45:13.878 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:45:13.898 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 19:45:13.898 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 19:45:13.948 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:45:13.968 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:45:13.968 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:45:14.068 -07 000000610 INF: =================== Cycle #30, Pumping Reagent IMT (1) ===================
17-03-17 19:45:14.068 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:45:14.068 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:45:14.098 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 19:45:14.098 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 19:45:14.098 -07 000000610 INF: =================== Cycle #30, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 19:45:14.228 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:45:14.268 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:45:15.478 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.99219,
17-03-17 19:45:15.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:45:15.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:45:16.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:45:16.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:45:16.188 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:45:16.188 -07 000000610 INF: =================== Cycle #30, Pumping Reagent IMT (1) ===================
17-03-17 19:45:16.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:45:16.348 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:45:16.348 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:45:16.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:45:16.508 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:45:16.508 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:45:16.508 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:45:16.638 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:45:16.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:45:16.718 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:45:16.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=393, R2=416, Total=809. Warn if over 250 bubbles per interval.
17-03-17 19:45:17.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:45:17.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:45:17.128 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:45:17.128 -07 000000610 INF: =================== Cycle #30 ===================
17-03-17 19:45:18.348 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:45:18.348 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:45:18.348 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:45:18.368 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 19:45:18.368 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 19:45:18.368 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:45:18.598 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:45:18.618 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 19:45:18.618 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 19:45:18.668 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:45:18.688 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:45:18.688 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:45:18.788 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3) ===================
17-03-17 19:45:18.788 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:45:18.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:45:18.818 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 19:45:18.818 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 19:45:18.818 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:45:18.948 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:45:18.988 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:45:19.858 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:45:19.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:45:19.888 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:45:19.888 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3) ===================
17-03-17 19:45:20.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:45:20.048 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:45:20.048 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:45:20.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:45:20.208 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:45:20.208 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:45:20.208 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:45:20.338 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:45:20.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:45:20.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:45:20.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:45:20.828 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:45:20.828 -07 000000610 INF: =================== Cycle #30 ===================
17-03-17 19:45:20.828 -07 000000610 INF: =================== Cycle #30, Flow Cell Temp 65° ===================
17-03-17 19:45:20.828 -07 000000610 INF: =================== Cycle #30, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 19:45:20.838 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.008536,
17-03-17 19:45:20.848 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 19:45:20.848 -07 000000626 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:45:20.858 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:45:20.878 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:45:20.878 -07 000000593 INF: FPGA: Recv TEC2EN 
17-03-17 19:45:20.888 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:45:20.888 -07 000000610 INF: =================== Cycle #30, Flow Cell Temp 65° ===================
17-03-17 19:45:20.888 -07 000000610 INF: =================== Cycle #30 ===================
17-03-17 19:45:20.888 -07 000000610 INF: WaitCommand(30000) start
17-03-17 19:45:21.718 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:45:21.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=393, R2=416, Total=809. Warn if over 250 bubbles per interval.
17-03-17 19:45:26.218 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.018051,
17-03-17 19:45:26.718 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:45:26.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=393, R2=416, Total=809. Warn if over 250 bubbles per interval.
17-03-17 19:45:31.578 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.033041,
17-03-17 19:45:31.718 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:45:31.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=393, R2=416, Total=809. Warn if over 250 bubbles per interval.
17-03-17 19:45:36.718 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:45:36.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=393, R2=416, Total=809. Warn if over 250 bubbles per interval.
17-03-17 19:45:36.938 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.028963,
17-03-17 19:45:41.718 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:45:41.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=393, R2=416, Total=809. Warn if over 250 bubbles per interval.
17-03-17 19:45:42.298 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.007176,
17-03-17 19:45:46.718 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:45:46.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=393, R2=416, Total=809. Warn if over 250 bubbles per interval.
17-03-17 19:45:47.658 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.996267,
17-03-17 19:45:50.898 -07 000000610 INF: WaitCommand(30000) end
17-03-17 19:45:50.898 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3) ===================
17-03-17 19:45:50.898 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 19:45:50.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:45:50.988 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 19:45:50.988 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 19:45:50.988 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:45:51.118 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 19:45:51.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:45:51.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:45:51.718 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:45:51.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=393, R2=416, Total=809. Warn if over 250 bubbles per interval.
17-03-17 19:45:51.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:45:51.728 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 19:45:51.728 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3) ===================
17-03-17 19:45:51.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:45:51.898 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:45:51.898 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:45:52.028 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:45:52.058 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:45:52.058 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:45:52.058 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:45:52.188 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:45:52.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:45:52.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:45:52.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:45:52.678 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:45:52.678 -07 000000610 INF: =================== Cycle #30 ===================
17-03-17 19:45:52.678 -07 000000382 INF: WaitCommand(30000) start
17-03-17 19:45:52.678 -07 000000486 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:45:52.678 -07 000000486 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:45:53.018 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.003063,
17-03-17 19:45:53.898 -07 000000486 INF: AsyncDelayTimer waited 1217ms
17-03-17 19:45:53.898 -07 000000486 INF: LanePump: Xmit /1?\r
17-03-17 19:45:53.928 -07 000000486 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 19:45:53.928 -07 000000486 INF: LanePump: Current Position of Pump is: 1920
17-03-17 19:45:54.058 -07 000000486 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:45:54.098 -07 000000486 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:45:56.438 -07 000000486 INF: LanePump: Xmit /1Q\r
17-03-17 19:45:56.468 -07 000000486 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:45:56.718 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:45:56.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=393, R2=416, Total=809. Warn if over 250 bubbles per interval.
17-03-17 19:45:56.888 -07 000000486 INF: LanePump: Xmit /1Q\r
17-03-17 19:45:56.918 -07 000000486 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:45:56.918 -07 000000486 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 19:45:56.918 -07 000000486 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:45:56.918 -07 000000486 INF: ===================  ===================
17-03-17 19:45:58.378 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.990831,
17-03-17 19:46:01.718 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:46:01.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=393, R2=416, Total=809. Warn if over 250 bubbles per interval.
17-03-17 19:46:03.738 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.001704,
17-03-17 19:46:06.718 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:46:06.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=393, R2=416, Total=809. Warn if over 250 bubbles per interval.
17-03-17 19:46:09.098 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.999021,
17-03-17 19:46:11.718 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:46:11.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=393, R2=416, Total=809. Warn if over 250 bubbles per interval.
17-03-17 19:46:14.458 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.989471,
17-03-17 19:46:16.718 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:46:16.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=393, R2=416, Total=809. Warn if over 250 bubbles per interval.
17-03-17 19:46:19.818 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.988112,
17-03-17 19:46:21.718 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:46:21.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=393, R2=416, Total=809. Warn if over 250 bubbles per interval.
17-03-17 19:46:22.688 -07 000000382 INF: WaitCommand(30000) end
17-03-17 19:46:22.688 -07 000000610 INF: =================== Cycle #30, Flow Cell Temp 22° ===================
17-03-17 19:46:22.688 -07 000000610 INF: =================== Cycle #30, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 19:46:22.688 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 19:46:22.688 -07 000000424 INF: FPGA: Recv TEC2TEMP 
17-03-17 19:46:22.698 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:46:22.698 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 19:46:22.698 -07 000000593 INF: FPGA: Recv TEC2EN 
17-03-17 19:46:22.708 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:22.708 -07 000000610 INF: =================== Cycle #30, Flow Cell Temp 22° ===================
17-03-17 19:46:22.708 -07 000000610 INF: =================== Cycle #30 ===================
17-03-17 19:46:22.708 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3) ===================
17-03-17 19:46:22.708 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 19:46:22.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:46:22.748 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 19:46:22.748 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 19:46:22.748 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:46:22.878 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 19:46:22.918 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:46:25.178 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.994908,
17-03-17 19:46:26.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:46:26.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:46:26.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:46:26.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:46:26.718 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 4
17-03-17 19:46:26.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=4, R2=3, Total=7. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=397, R2=419, Total=816. Warn if over 250 bubbles per interval.
17-03-17 19:46:26.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:46:26.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:46:26.978 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 19:46:26.978 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3) ===================
17-03-17 19:46:27.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:46:27.138 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:46:27.138 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:46:27.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:46:27.298 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:46:27.298 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:46:27.298 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:46:27.428 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:46:27.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:46:27.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:46:27.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:46:27.918 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:46:27.918 -07 000000610 INF: =================== Cycle #30 ===================
17-03-17 19:46:29.138 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 19:46:29.138 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 19:46:29.138 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:46:29.158 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:46:29.158 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 19:46:29.158 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 19:46:29.308 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:46:29.328 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:46:29.328 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:46:29.378 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:46:29.398 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:46:29.398 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:46:29.498 -07 000000610 INF: =================== Cycle #30, Pumping Reagent USM (2) ===================
17-03-17 19:46:29.498 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 19:46:29.498 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:46:29.528 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 19:46:29.528 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 19:46:29.528 -07 000000610 INF: =================== Cycle #30, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 19:46:29.658 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 19:46:29.698 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:46:30.538 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.999021,
17-03-17 19:46:31.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:46:31.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:46:31.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:46:31.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:46:31.618 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 19:46:31.618 -07 000000610 INF: =================== Cycle #30, Pumping Reagent USM (2) ===================
17-03-17 19:46:31.718 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 19:46:31.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:46:31.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:46:31.778 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:46:31.778 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:46:31.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:46:31.938 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:46:31.938 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:46:31.938 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:46:32.068 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:46:32.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:46:32.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:46:32.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:46:32.558 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 19:46:32.558 -07 000000610 INF: =================== Cycle #30 ===================
17-03-17 19:46:33.778 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 19:46:33.778 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 19:46:33.778 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:46:33.798 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 19:46:33.798 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 19:46:33.798 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 19:46:33.948 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:46:33.968 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 19:46:33.968 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 19:46:34.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:46:34.038 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:46:34.038 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 19:46:34.138 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3) ===================
17-03-17 19:46:34.138 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 19:46:34.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:46:34.168 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 19:46:34.168 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 19:46:34.168 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 19:46:34.298 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 19:46:34.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:46:35.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:46:35.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:46:35.238 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 19:46:35.238 -07 000000610 INF: =================== Cycle #30, Pumping Reagent PR2 (3) ===================
17-03-17 19:46:35.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:46:35.398 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:46:35.398 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:46:35.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 19:46:35.558 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:46:35.558 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:46:35.558 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 19:46:35.688 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 19:46:35.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:46:35.898 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.981281,
17-03-17 19:46:36.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 19:46:36.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:46:36.178 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 19:46:36.178 -07 000000610 INF: =================== Cycle #30 ===================
17-03-17 19:46:36.178 -07 000000569 INF: WaitCommand(10000) start
17-03-17 19:46:36.178 -07 000000429 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:46:36.178 -07 000000429 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 19:46:36.718 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:46:36.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:46:37.398 -07 000000429 INF: AsyncDelayTimer waited 1216ms
17-03-17 19:46:37.398 -07 000000429 INF: LanePump: Xmit /1?\r
17-03-17 19:46:37.428 -07 000000429 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 19:46:37.428 -07 000000429 INF: LanePump: Current Position of Pump is: 1110
17-03-17 19:46:37.558 -07 000000429 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 19:46:37.598 -07 000000429 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:46:39.128 -07 000000429 INF: LanePump: Xmit /1Q\r
17-03-17 19:46:39.158 -07 000000429 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 19:46:39.578 -07 000000429 INF: LanePump: Xmit /1Q\r
17-03-17 19:46:39.608 -07 000000429 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 19:46:39.608 -07 000000429 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 19:46:39.608 -07 000000429 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 19:46:39.608 -07 000000429 INF: ===================  ===================
17-03-17 19:46:41.258 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.000345,
17-03-17 19:46:41.718 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:46:41.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:46:46.188 -07 000000569 INF: WaitCommand(10000) end
17-03-17 19:46:46.188 -07 000000610 INF: =================== Cycle #30, Imaging ===================
17-03-17 19:46:46.188 -07 000000610 INF: Imaging Cycle 30: ScanTilesCommand Cycle 30 time start.
17-03-17 19:46:46.188 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 19:46:46.188 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:46:46.218 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 19:46:46.218 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 19:46:46.218 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 19:46:46.518 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 19:46:46.538 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 19:46:46.538 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 19:46:46.588 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 19:46:46.608 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 19:46:46.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:46:46.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:46:46.608 -07 000000547 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 19:46:46.608 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:46:46.618 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.978563,
17-03-17 19:46:46.628 -07 000000547 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 19:46:46.628 -07 000000476 INF: FPGA: Recv EXLED1ON 
17-03-17 19:46:46.638 -07 000000547 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:46:46.638 -07 000000547 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 19:46:46.638 -07 000000541 INF: FPGA: Recv EXLED1ADCR 22983
17-03-17 19:46:46.648 -07 000000547 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:46.648 -07 000000547 INF: RedLED: Using Red data: Photodiode ADC 22983 --> 7.4 mW (old method), or 203.8 mW (new method). Difference = 196.4 mW
17-03-17 19:46:46.658 -07 000000547 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 19:46:46.658 -07 000000431 INF: FPGA: Recv EXLED1OFF 
17-03-17 19:46:46.668 -07 000000547 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:46:46.668 -07 000000547 INF: RedLED: LED was on for 29 ms
17-03-17 19:46:46.668 -07 000000547 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 53 ms.
17-03-17 19:46:46.668 -07 000000547 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 19:46:46.668 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:46:46.688 -07 000000547 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 19:46:46.688 -07 000000424 INF: FPGA: Recv EXLED2ON 
17-03-17 19:46:46.698 -07 000000547 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:46:46.698 -07 000000547 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:46:46.698 -07 000000382 INF: FPGA: Recv EXLED1ADCR 2099
17-03-17 19:46:46.708 -07 000000547 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:46.708 -07 000000547 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-17 19:46:46.708 -07 000000547 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 19:46:46.708 -07 000000541 INF: FPGA: Recv EXLED2OFF 
17-03-17 19:46:46.718 -07 000000547 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:46.718 -07 000000547 INF: GreenLED: LED was on for 19 ms
17-03-17 19:46:46.718 -07 000000547 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 48 ms.
17-03-17 19:46:46.718 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:46:46.718 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:46:46.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:46:46.718 -07 000000462 INF: FPGA: Recv EMCUR 
17-03-17 19:46:46.728 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:46:46.728 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 19:46:47.228 -07 000000382 INF: FPGA: Recv EMOUT
17-03-17 19:46:47.228 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 19:46:47.228 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 19:46:47.228 -07 000000618 INF: FPGA: Recv EMCUR 
17-03-17 19:46:47.238 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:46:47.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:46:47.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3818359375, Z-Position -0.127582711731325. ------
17-03-17 19:46:47.238 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:46:47.238 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17941 mm
17-03-17 19:46:47.238 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:46:47.238 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:46:47.238 -07 000000462 INF: Y Motor: Moving to 59.9126 mm, started at 75.3818 mm, delta = -15.4692 mm
17-03-17 19:46:47.238 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 39193, sync = True, waitForSettling = False)
17-03-17 19:46:47.238 -07 000000547 INF: Z Motor: Moving to -0.179414 mm, started at -0.127583 mm, distance = -51.83 um
17-03-17 19:46:47.238 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:46:47.248 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:46:47.248 -07 000000547 INF: FPGA: Xmit ZDACW 39193\n [Z Motor]
17-03-17 19:46:47.248 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:46:47.258 -07 000000547 INF: FPGA: 'ZDACW 39193' command took 3 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:46:47.258 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:46:47.268 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:46:47.268 -07 000000486 INF: FPGA: Recv YRDPOS 154382
17-03-17 19:46:47.278 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 19:46:47.278 -07 000000462 INF: Y Motor: Encoder = 154382 = motor step 120610.9 = 75.3818 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:46:47.278 -07 000000462 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 19:46:47.278 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:46:47.278 -07 000000462 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:46:47.278 -07 000000618 INF: FPGA: Recv ZDACR 39193
17-03-17 19:46:47.288 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:46:47.288 -07 000000547 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 19:46:47.288 -07 000000462 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:46:47.458 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:46:47.458 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 19:46:48.968 -07 000000541 INF: FPGA: Recv YMVTO 122703 24777
17-03-17 19:46:48.968 -07 000000462 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1695 ms overall
17-03-17 19:46:48.968 -07 000000462 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:46:48.968 -07 000000462 INF: Y Motor: To move from 75.382 to 59.913 (-15.469 mm) should take 24751 steps, but required 24777 steps (15.486 mm). Slippage = 0.016 mm (0.00%).
17-03-17 19:46:48.968 -07 000000462 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1695 ms, distance = 15.469 mm, average velocity = 9.126 mm/sec
17-03-17 19:46:51.718 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:46:51.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:46:51.818 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:46:51.818 -07 000000431 INF: FPGA: Recv YRDPOS 122698
17-03-17 19:46:51.828 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:46:51.828 -07 000000462 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:46:51.848 -07 000000462 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:46:51.848 -07 000000462 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 19:46:51.848 -07 000000462 INF: Y Motor: Moved to 59.9111 after 4606 ms
17-03-17 19:46:51.848 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179414 mm (DAC = 39193)
17-03-17 19:46:51.848 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:51.848 -07 000000501 INF: FPGA: Recv ZSGSRD 37223
17-03-17 19:46:51.858 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:46:51.858 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:51.858 -07 000000478 INF: FPGA: Recv ZSGSRD 37217
17-03-17 19:46:51.868 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:51.868 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:51.868 -07 000000618 INF: FPGA: Recv ZSGSRD 37219
17-03-17 19:46:51.878 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:51.878 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:51.878 -07 000000382 INF: FPGA: Recv ZSGSRD 37218
17-03-17 19:46:51.888 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:51.888 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:51.888 -07 000000424 INF: FPGA: Recv ZSGSRD 37217
17-03-17 19:46:51.898 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:51.898 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:51.898 -07 000000486 INF: FPGA: Recv ZSGSRD 37216
17-03-17 19:46:51.908 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:51.908 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:51.908 -07 000000462 INF: FPGA: Recv ZSGSRD 37217
17-03-17 19:46:51.918 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:51.918 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:51.918 -07 000000429 INF: FPGA: Recv ZSGSRD 37223
17-03-17 19:46:51.928 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:51.928 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:51.928 -07 000000569 INF: FPGA: Recv ZSGSRD 37222
17-03-17 19:46:51.938 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:46:51.938 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:51.938 -07 000000541 INF: FPGA: Recv ZSGSRD 37218
17-03-17 19:46:51.948 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:51.948 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:46:51.948 -07 000000382 INF: FPGA: Recv ZPIEZORD 33670
17-03-17 19:46:51.958 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:51.958 -07 000000551 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.980 V. Piezo Error = -7.9 V.
17-03-17 19:46:51.958 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.4 um, Read 10 ADC samples: Avg = 37219 (-178.5 uncal um), Error = 0.9 uncal um, Median = 37218 (-178.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 37216 (-178.5 uncal um), Max = 37223 (-178.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:46:51.958 -07 000000551 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37219, posNoise = 4, negNoise = 3
17-03-17 19:46:51.958 -07 000000551 INF: Z Motor: After move to -0.179414, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:46:51.958 -07 000000551 INF: Z Motor: Settle wait time = 4608 ms, measure time = 104 ms (allowed 150 ms), total time = 4712 ms
17-03-17 19:46:51.958 -07 000000551 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:46:52.008 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4765 ms
17-03-17 19:46:52.008 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:46:52.008 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.985358,
17-03-17 19:46:52.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:46:52.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:46:52.008 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:46:52.008 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:46:52.008 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:46:52.008 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:46:52.008 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:46:52.008 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:46:52.038 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-17 19:46:52.038 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:46:52.038 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:46:52.038 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:46:52.048 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:46:52.048 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 40 ms.
17-03-17 19:46:52.058 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:46:52.098 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:46:52.298 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:46:52.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:46:52.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:46:52.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:46:52.338 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:46:52.338 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 19:46:52.338 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 19:46:52.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:46:52.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:46:52.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:46:52.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:46:52.438 -07 000000431 INF: Image SNR check: start
17-03-17 19:46:52.438 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:46:52.438 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:46:52.448 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:46:52.448 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:46:52.458 -07 000000431 INF: Image SNR check: pass  [peak (Max-Min)=68.80]
17-03-17 19:46:52.458 -07 000000431 INF: Autofocus start
17-03-17 19:46:52.458 -07 000000431 INF: MeasureProfile start
17-03-17 19:46:52.468 -07 000000431 INF: MeasureProfile done
17-03-17 19:46:52.468 -07 000000431 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:46:52.468 -07 000000431 INF: Autofocus finished
17-03-17 19:46:52.648 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:46:52.648 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:46:52.648 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.179426103715336. ----------
17-03-17 19:46:52.648 -07 000000610 INF: Cycle	30	Tile	1	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:46:52.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37726, sync = True, waitForSettling = True)
17-03-17 19:46:52.658 -07 000000610 INF: Z Motor: Moving to -0.172699 mm, started at -0.179426 mm, distance = 6.73 um
17-03-17 19:46:52.658 -07 000000610 INF: FPGA: Xmit ZDACW 37726\n [Z Motor]
17-03-17 19:46:52.658 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:46:52.668 -07 000000610 INF: FPGA: 'ZDACW 37726' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:46:52.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:46:52.668 -07 000000593 INF: FPGA: Recv ZDACR 37726
17-03-17 19:46:52.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:52.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:46:52.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:52.828 -07 000000476 INF: FPGA: Recv ZSGSRD 36168
17-03-17 19:46:52.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:52.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:52.838 -07 000000501 INF: FPGA: Recv ZSGSRD 36177
17-03-17 19:46:52.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:52.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:52.848 -07 000000618 INF: FPGA: Recv ZSGSRD 36170
17-03-17 19:46:52.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:52.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:52.858 -07 000000431 INF: FPGA: Recv ZSGSRD 36172
17-03-17 19:46:52.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:52.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:52.868 -07 000000593 INF: FPGA: Recv ZSGSRD 36174
17-03-17 19:46:52.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:52.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:52.878 -07 000000569 INF: FPGA: Recv ZSGSRD 36177
17-03-17 19:46:52.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:52.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:52.888 -07 000000462 INF: FPGA: Recv ZSGSRD 36175
17-03-17 19:46:52.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:52.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:52.898 -07 000000547 INF: FPGA: Recv ZSGSRD 36174
17-03-17 19:46:52.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:52.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:52.908 -07 000000476 INF: FPGA: Recv ZSGSRD 36172
17-03-17 19:46:52.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:52.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:52.918 -07 000000438 INF: FPGA: Recv ZSGSRD 36173
17-03-17 19:46:52.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:52.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:46:52.928 -07 000000569 INF: FPGA: Recv ZPIEZORD 32280
17-03-17 19:46:52.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:52.938 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.757 V. Piezo Error = -8.6 V.
17-03-17 19:46:52.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36173 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36174 (-171.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36168 (-171.8 uncal um), Max = 36177 (-171.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:46:52.938 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36173, posNoise = 4, negNoise = 5
17-03-17 19:46:52.938 -07 000000610 INF: Z Motor: After move to -0.172699, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:46:52.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:46:52.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:46:52.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:46:52.938 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:46:52.938 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:46:52.938 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:46:52.938 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:46:52.938 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:46:52.938 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:46:52.938 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:46:52.938 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:46:52.938 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:46:52.938 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:46:52.948 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:46:52.948 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:46:52.958 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:46:52.958 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:46:52.968 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 19:46:52.968 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:46:52.968 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:46:52.968 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:46:52.988 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:46:52.988 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 44 ms.
17-03-17 19:46:52.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 37903 150\n [Camera]
17-03-17 19:46:53.188 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:46:53.588 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:46:53.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:46:53.588 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:46:53.598 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:46:53.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:46:53.598 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:46:53.598 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:46:53.598 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:46:53.598 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:46:53.598 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:46:54.018 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 417 ms.
17-03-17 19:46:54.018 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 417 ms.
17-03-17 19:46:54.018 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:46:54.018 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 416 ms.
17-03-17 19:46:54.018 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 19:46:54.018 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:46:54.018 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37903 790
17-03-17 19:46:54.018 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:46:54.018 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:46:54.018 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 429 ms.
17-03-17 19:46:54.028 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:46:54.028 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 437 ms.
17-03-17 19:46:54.128 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:46:54.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:46:54.128 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:46:54.128 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:46:54.128 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:46:54.128 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:46:54.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:46:54.128 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:46:54.138 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:46:54.138 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1143720280, 0x0, 418435064) start.
17-03-17 19:46:54.318 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:46:54.318 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:46:54.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 37903 150' command took 2 ms to send, 1327 ms to get response, and 1334 ms overall
17-03-17 19:46:54.318 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.173104
17-03-17 19:46:54.318 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17310 mm
17-03-17 19:46:54.328 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:46:54.328 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:46:54.328 -07 000000482 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 19:46:54.328 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:46:54.328 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37815, sync = True, waitForSettling = False)
17-03-17 19:46:54.328 -07 000000551 INF: Z Motor: Moving to -0.173106 mm, started at -0.172706 mm, distance = -0.40 um
17-03-17 19:46:54.328 -07 000000476 INF: FPGA: Recv YRDPOS 122698
17-03-17 19:46:54.338 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:46:54.338 -07 000000482 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:46:54.338 -07 000000482 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:46:54.338 -07 000000482 INF: Y Motor: Moving 1330 steps2
17-03-17 19:46:54.338 -07 000000551 INF: FPGA: Xmit ZDACW 37815\n [Z Motor]
17-03-17 19:46:54.338 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 19:46:54.348 -07 000000551 INF: FPGA: 'ZDACW 37815' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:46:54.348 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:46:54.358 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:46:54.358 -07 000000424 INF: FPGA: Recv ZDACR 37815
17-03-17 19:46:54.368 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:46:54.368 -07 000000551 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:46:54.538 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 19:46:54.538 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:46:54.538 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:46:54.538 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1143720280, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 19:46:54.538 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:46:54.538 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:46:54.538 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:46:54.538 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 19:46:54.538 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:46:54.548 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:46:54.718 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 19:46:54.728 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 19:46:54.748 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:46:54.758 -07 000000569 INF: FPGA: Recv YRDPOS 124381
17-03-17 19:46:54.758 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:46:54.758 -07 000000482 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:46:54.758 -07 000000482 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 19:46:54.758 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.831 mm, average velocity = 2.137 mm/sec
17-03-17 19:46:55.708 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:46:55.708 -07 000000501 INF: FPGA: Recv YRDPOS 124381
17-03-17 19:46:55.718 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:46:55.718 -07 000000482 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:46:55.738 -07 000000482 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:46:55.738 -07 000000482 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:46:55.738 -07 000000482 INF: Y Motor: Moved to 60.7329 after 1410 ms (table move)
17-03-17 19:46:55.738 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173106 mm (DAC = 37815)
17-03-17 19:46:55.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:55.738 -07 000000551 INF: FPGA: Recv ZSGSRD 36237
17-03-17 19:46:55.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:46:55.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:55.748 -07 000000626 INF: FPGA: Recv ZSGSRD 36240
17-03-17 19:46:55.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:55.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:55.758 -07 000000561 INF: FPGA: Recv ZSGSRD 36245
17-03-17 19:46:55.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:55.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:55.768 -07 000000431 INF: FPGA: Recv ZSGSRD 36239
17-03-17 19:46:55.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:55.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:55.778 -07 000000618 INF: FPGA: Recv ZSGSRD 36234
17-03-17 19:46:55.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:55.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:55.788 -07 000000478 INF: FPGA: Recv ZSGSRD 36238
17-03-17 19:46:55.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:55.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:55.798 -07 000000626 INF: FPGA: Recv ZSGSRD 36233
17-03-17 19:46:55.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:55.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:55.808 -07 000000486 INF: FPGA: Recv ZSGSRD 36229
17-03-17 19:46:55.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:55.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:55.818 -07 000000431 INF: FPGA: Recv ZSGSRD 36234
17-03-17 19:46:55.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:55.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:55.828 -07 000000618 INF: FPGA: Recv ZSGSRD 36240
17-03-17 19:46:55.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:55.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:46:55.838 -07 000000429 INF: FPGA: Recv ZPIEZORD 32372
17-03-17 19:46:55.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:55.848 -07 000000610 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.770 V. Piezo Error = -8.5 V.
17-03-17 19:46:55.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36237 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36238 (-172.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36229 (-172.2 uncal um), Max = 36245 (-172.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:46:55.848 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36237, posNoise = 8, negNoise = 8
17-03-17 19:46:55.848 -07 000000610 INF: Z Motor: After move to -0.173106, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:46:55.848 -07 000000610 INF: Z Motor: Settle wait time = 1412 ms, measure time = 105 ms (allowed 150 ms), total time = 1517 ms
17-03-17 19:46:55.848 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:46:55.898 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1570 ms
17-03-17 19:46:55.898 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:46:55.898 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.173117527392127. ----------
17-03-17 19:46:55.898 -07 000000610 INF: Cycle	30	Tile	2	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:46:55.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37638, sync = True, waitForSettling = True)
17-03-17 19:46:55.898 -07 000000610 INF: Z Motor: Moving to -0.172296 mm, started at -0.173118 mm, distance = 0.82 um
17-03-17 19:46:55.898 -07 000000610 INF: FPGA: Xmit ZDACW 37638\n [Z Motor]
17-03-17 19:46:55.898 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:46:55.908 -07 000000610 INF: FPGA: 'ZDACW 37638' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:46:55.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:46:55.908 -07 000000382 INF: FPGA: Recv ZDACR 37638
17-03-17 19:46:55.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:55.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:46:56.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:56.068 -07 000000541 INF: FPGA: Recv ZSGSRD 36112
17-03-17 19:46:56.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:46:56.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:56.078 -07 000000593 INF: FPGA: Recv ZSGSRD 36115
17-03-17 19:46:56.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:56.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:56.088 -07 000000478 INF: FPGA: Recv ZSGSRD 36116
17-03-17 19:46:56.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:56.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:56.098 -07 000000547 INF: FPGA: Recv ZSGSRD 36108
17-03-17 19:46:56.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:56.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:56.108 -07 000000382 INF: FPGA: Recv ZSGSRD 36102
17-03-17 19:46:56.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:56.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:56.118 -07 000000486 INF: FPGA: Recv ZSGSRD 36111
17-03-17 19:46:56.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:56.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:56.128 -07 000000561 INF: FPGA: Recv ZSGSRD 36113
17-03-17 19:46:56.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:56.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:56.138 -07 000000618 INF: FPGA: Recv ZSGSRD 36113
17-03-17 19:46:56.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:56.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:56.148 -07 000000431 INF: FPGA: Recv ZSGSRD 36111
17-03-17 19:46:56.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:56.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:56.158 -07 000000476 INF: FPGA: Recv ZSGSRD 36113
17-03-17 19:46:56.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:56.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:46:56.168 -07 000000541 INF: FPGA: Recv ZPIEZORD 32189
17-03-17 19:46:56.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:56.178 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.743 V. Piezo Error = -8.7 V.
17-03-17 19:46:56.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36111 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36112 (-171.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36102 (-171.4 uncal um), Max = 36116 (-171.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:46:56.178 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36111, posNoise = 5, negNoise = 9
17-03-17 19:46:56.178 -07 000000610 INF: Z Motor: After move to -0.172296, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:46:56.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:46:56.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:46:56.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:46:56.178 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:46:56.178 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:46:56.178 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:46:56.178 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:46:56.178 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:46:56.178 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:46:56.178 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:46:56.178 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:46:56.178 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:46:56.178 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:46:56.188 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:46:56.188 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:46:56.188 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:46:56.188 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:46:56.198 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:46:56.198 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:46:56.198 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:46:56.198 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:46:56.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 37815 150\n [Camera]
17-03-17 19:46:56.398 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:46:56.718 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:46:56.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:46:56.808 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:46:56.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:46:56.808 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:46:56.808 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:46:56.808 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:46:56.808 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:46:56.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:46:56.808 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:46:56.808 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:46:56.808 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:46:57.008 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37815 790
17-03-17 19:46:57.148 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:46:57.208 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:46:57.208 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:46:57.208 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:46:57.208 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 19:46:57.208 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:46:57.208 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:46:57.218 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:46:57.218 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:46:57.218 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:46:57.218 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:46:57.348 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:46:57.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:46:57.348 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:46:57.348 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:46:57.348 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:46:57.348 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:46:57.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:46:57.348 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:46:57.348 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:46:57.348 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:46:57.368 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.986717,
17-03-17 19:46:57.538 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-17 19:46:57.538 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:46:57.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 37815 150' command took 2 ms to send, 1326 ms to get response, and 1336 ms overall
17-03-17 19:46:57.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:46:57.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.172308076662265. ------
17-03-17 19:46:57.548 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17888 mm
17-03-17 19:46:57.548 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:46:57.548 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:46:57.548 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:46:57.548 -07 000000482 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 19:46:57.548 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 39076, sync = True, waitForSettling = False)
17-03-17 19:46:57.548 -07 000000547 INF: Z Motor: Moving to -0.178878 mm, started at -0.172308 mm, distance = -6.57 um
17-03-17 19:46:57.548 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:46:57.558 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:46:57.558 -07 000000547 INF: FPGA: Xmit ZDACW 39076\n [Z Motor]
17-03-17 19:46:57.558 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:46:57.568 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:46:57.568 -07 000000547 INF: FPGA: 'ZDACW 39076' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:46:57.568 -07 000000478 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:46:57.578 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:46:57.578 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:46:57.578 -07 000000482 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:46:57.578 -07 000000482 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:46:57.578 -07 000000482 INF: Y Motor: Moving 1343 steps-20
17-03-17 19:46:57.588 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:46:57.588 -07 000000431 INF: FPGA: Recv ZDACR 39076
17-03-17 19:46:57.598 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:46:57.598 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:46:57.598 -07 000000547 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 19:46:57.738 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:46:57.738 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:46:57.738 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:46:57.738 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:46:57.738 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:46:57.738 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:46:57.738 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:46:57.748 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:46:57.748 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:46:57.748 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:46:57.778 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:46:57.778 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:46:57.968 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 19:46:57.968 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 19:46:58.008 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:46:58.008 -07 000000501 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:46:58.018 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:46:58.018 -07 000000482 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:46:58.018 -07 000000482 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:46:58.018 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.137 mm/sec
17-03-17 19:46:58.968 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:46:58.968 -07 000000551 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:46:58.978 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:46:58.978 -07 000000482 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:46:58.998 -07 000000482 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:46:58.998 -07 000000482 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:46:58.998 -07 000000482 INF: Y Motor: Moved to 61.5640 after 1445 ms (table move)
17-03-17 19:46:58.998 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178878 mm (DAC = 39076)
17-03-17 19:46:58.998 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:58.998 -07 000000501 INF: FPGA: Recv ZSGSRD 37134
17-03-17 19:46:59.008 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:46:59.008 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:59.008 -07 000000618 INF: FPGA: Recv ZSGSRD 37129
17-03-17 19:46:59.018 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:59.018 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:59.018 -07 000000382 INF: FPGA: Recv ZSGSRD 37126
17-03-17 19:46:59.028 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:59.028 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:59.028 -07 000000431 INF: FPGA: Recv ZSGSRD 37134
17-03-17 19:46:59.038 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:59.038 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:59.038 -07 000000593 INF: FPGA: Recv ZSGSRD 37131
17-03-17 19:46:59.048 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:59.048 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:59.048 -07 000000486 INF: FPGA: Recv ZSGSRD 37138
17-03-17 19:46:59.058 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:59.058 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:59.058 -07 000000561 INF: FPGA: Recv ZSGSRD 37135
17-03-17 19:46:59.068 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:59.068 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:59.068 -07 000000382 INF: FPGA: Recv ZSGSRD 37134
17-03-17 19:46:59.078 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:59.078 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:59.078 -07 000000501 INF: FPGA: Recv ZSGSRD 37135
17-03-17 19:46:59.088 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:59.088 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:59.088 -07 000000462 INF: FPGA: Recv ZSGSRD 37130
17-03-17 19:46:59.098 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:59.098 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:46:59.098 -07 000000486 INF: FPGA: Recv ZPIEZORD 33568
17-03-17 19:46:59.108 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:59.108 -07 000000429 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.963 V. Piezo Error = -7.9 V.
17-03-17 19:46:59.108 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.9 um, Read 10 ADC samples: Avg = 37133 (-178.0 uncal um), Error = 0.9 uncal um, Median = 37134 (-178.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37126 (-177.9 uncal um), Max = 37138 (-178.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:46:59.108 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37133, posNoise = 5, negNoise = 7
17-03-17 19:46:59.108 -07 000000429 INF: Z Motor: After move to -0.178878, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:46:59.108 -07 000000429 INF: Z Motor: Settle wait time = 1448 ms, measure time = 106 ms (allowed 150 ms), total time = 1554 ms
17-03-17 19:46:59.108 -07 000000429 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:46:59.158 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 19:46:59.158 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:46:59.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:46:59.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:46:59.158 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:46:59.158 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:46:59.158 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:46:59.158 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:46:59.158 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:46:59.158 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:46:59.168 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:46:59.168 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:46:59.178 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:46:59.178 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:46:59.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:46:59.218 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:46:59.418 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:46:59.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:46:59.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:46:59.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:46:59.468 -07 000000478 INF: FPGA: Recv @CAMSNAP 283
17-03-17 19:46:59.468 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:46:59.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 288 ms overall
17-03-17 19:46:59.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:46:59.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:46:59.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:46:59.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:46:59.568 -07 000000569 INF: Autofocus start
17-03-17 19:46:59.568 -07 000000569 INF: MeasureProfile start
17-03-17 19:46:59.568 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:46:59.568 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:46:59.578 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:46:59.578 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:46:59.578 -07 000000569 INF: MeasureProfile done
17-03-17 19:46:59.578 -07 000000569 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:46:59.578 -07 000000569 INF: Autofocus finished
17-03-17 19:46:59.778 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:46:59.778 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:46:59.778 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178873621471145. ----------
17-03-17 19:46:59.778 -07 000000610 INF: Cycle	30	Tile	3	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:46:59.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37572, sync = True, waitForSettling = True)
17-03-17 19:46:59.788 -07 000000610 INF: Z Motor: Moving to -0.171994 mm, started at -0.178874 mm, distance = 6.88 um
17-03-17 19:46:59.788 -07 000000610 INF: FPGA: Xmit ZDACW 37572\n [Z Motor]
17-03-17 19:46:59.788 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:46:59.798 -07 000000610 INF: FPGA: 'ZDACW 37572' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:46:59.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:46:59.798 -07 000000382 INF: FPGA: Recv ZDACR 37572
17-03-17 19:46:59.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:59.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:46:59.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:59.958 -07 000000482 INF: FPGA: Recv ZSGSRD 36067
17-03-17 19:46:59.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:59.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:59.968 -07 000000431 INF: FPGA: Recv ZSGSRD 36066
17-03-17 19:46:59.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:59.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:59.978 -07 000000551 INF: FPGA: Recv ZSGSRD 36063
17-03-17 19:46:59.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:59.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:59.988 -07 000000424 INF: FPGA: Recv ZSGSRD 36061
17-03-17 19:46:59.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:46:59.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:46:59.998 -07 000000382 INF: FPGA: Recv ZSGSRD 36066
17-03-17 19:47:00.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:00.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:00.008 -07 000000547 INF: FPGA: Recv ZSGSRD 36064
17-03-17 19:47:00.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:00.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:00.018 -07 000000462 INF: FPGA: Recv ZSGSRD 36059
17-03-17 19:47:00.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:00.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:00.028 -07 000000551 INF: FPGA: Recv ZSGSRD 36066
17-03-17 19:47:00.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:00.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:00.038 -07 000000424 INF: FPGA: Recv ZSGSRD 36064
17-03-17 19:47:00.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:00.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:00.048 -07 000000382 INF: FPGA: Recv ZSGSRD 36067
17-03-17 19:47:00.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:00.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:00.058 -07 000000547 INF: FPGA: Recv ZPIEZORD 32148
17-03-17 19:47:00.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:00.068 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -8.7 V.
17-03-17 19:47:00.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36064 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36065 (-171.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36059 (-171.1 uncal um), Max = 36067 (-171.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:47:00.068 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36064, posNoise = 3, negNoise = 5
17-03-17 19:47:00.068 -07 000000610 INF: Z Motor: After move to -0.171994, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:00.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:47:00.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:00.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:00.068 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:00.068 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:00.068 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:47:00.068 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:47:00.068 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:47:00.068 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:00.068 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:47:00.068 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:47:00.068 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:47:00.068 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:47:00.078 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:47:00.078 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:47:00.078 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:47:00.078 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:47:00.088 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:47:00.088 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:47:00.088 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:47:00.088 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:47:00.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 37749 150\n [Camera]
17-03-17 19:47:00.288 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:47:00.688 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:47:00.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:47:00.688 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:00.688 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:00.688 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:47:00.698 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:47:00.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:47:00.698 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:00.698 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:00.698 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:47:00.888 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37749 790
17-03-17 19:47:01.038 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:47:01.068 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:47:01.068 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:47:01.068 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:01.068 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:47:01.068 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:47:01.068 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:01.078 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:47:01.078 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:01.078 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:47:01.078 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:47:01.228 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:47:01.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:47:01.228 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:01.228 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:01.228 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:47:01.228 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:47:01.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:47:01.238 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:01.238 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:01.238 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:47:01.418 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:47:01.418 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:47:01.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 37749 150' command took 2 ms to send, 1328 ms to get response, and 1334 ms overall
17-03-17 19:47:01.418 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.172008
17-03-17 19:47:01.428 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17201 mm
17-03-17 19:47:01.428 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:47:01.428 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:47:01.428 -07 000000551 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 19:47:01.428 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:01.428 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 37575, sync = True, waitForSettling = False)
17-03-17 19:47:01.428 -07 000000429 INF: FPGA: Recv YRDPOS 126083
17-03-17 19:47:01.438 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:47:01.438 -07 000000551 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:01.438 -07 000000551 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:47:01.438 -07 000000551 INF: Y Motor: Moving 1342 steps-18
17-03-17 19:47:01.438 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:47:01.608 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:47:01.608 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:47:01.608 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:01.618 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:47:01.618 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:47:01.618 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:01.618 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:01.628 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 11 ms.
17-03-17 19:47:01.628 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:47:01.628 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:47:01.718 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:47:01.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:47:01.818 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:47:01.818 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 380 ms overall
17-03-17 19:47:01.848 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:01.848 -07 000000618 INF: FPGA: Recv YRDPOS 127785
17-03-17 19:47:01.858 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:47:01.858 -07 000000551 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:01.858 -07 000000551 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:47:01.858 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.839 mm, average velocity = 2.201 mm/sec
17-03-17 19:47:02.728 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.007176,
17-03-17 19:47:02.808 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:02.808 -07 000000462 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:47:02.818 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:02.818 -07 000000551 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:02.838 -07 000000551 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:47:02.838 -07 000000551 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:47:02.838 -07 000000551 INF: Y Motor: Moved to 62.3955 after 1407 ms (table move)
17-03-17 19:47:02.838 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172007 mm (DAC = 37575)
17-03-17 19:47:02.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:02.838 -07 000000462 INF: FPGA: Recv ZSGSRD 36183
17-03-17 19:47:02.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:47:02.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:02.848 -07 000000476 INF: FPGA: Recv ZSGSRD 36187
17-03-17 19:47:02.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:02.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:02.858 -07 000000541 INF: FPGA: Recv ZSGSRD 36182
17-03-17 19:47:02.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:02.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:02.868 -07 000000438 INF: FPGA: Recv ZSGSRD 36188
17-03-17 19:47:02.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:02.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:02.878 -07 000000626 INF: FPGA: Recv ZSGSRD 36186
17-03-17 19:47:02.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:02.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:02.898 -07 000000476 INF: FPGA: Recv ZSGSRD 36194
17-03-17 19:47:02.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:47:02.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:02.908 -07 000000486 INF: FPGA: Recv ZSGSRD 36191
17-03-17 19:47:02.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:02.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:02.918 -07 000000547 INF: FPGA: Recv ZSGSRD 36195
17-03-17 19:47:02.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:02.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:02.928 -07 000000431 INF: FPGA: Recv ZSGSRD 36181
17-03-17 19:47:02.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:02.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:02.938 -07 000000541 INF: FPGA: Recv ZSGSRD 36189
17-03-17 19:47:02.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:02.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:02.948 -07 000000501 INF: FPGA: Recv ZPIEZORD 32311
17-03-17 19:47:02.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:02.958 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -8.3 V.
17-03-17 19:47:02.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36188 (-171.9 uncal um), Error = 0.1 uncal um, Median = 36188 (-171.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36181 (-171.9 uncal um), Max = 36195 (-172.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:47:02.958 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36188, posNoise = 7, negNoise = 7
17-03-17 19:47:02.958 -07 000000610 INF: Z Motor: After move to -0.172007, error = -0.000795, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:02.958 -07 000000610 INF: Z Motor: Settle wait time = 3051 ms, measure time = 117 ms (allowed 150 ms), total time = 3168 ms
17-03-17 19:47:02.958 -07 000000610 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 19:47:02.998 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1569 ms
17-03-17 19:47:02.998 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:47:02.998 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.17280274099718. ----------
17-03-17 19:47:02.998 -07 000000610 INF: Cycle	30	Tile	4	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:47:02.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37398, sync = True, waitForSettling = True)
17-03-17 19:47:02.998 -07 000000610 INF: Z Motor: Moving to -0.171197 mm, started at -0.172803 mm, distance = 1.61 um
17-03-17 19:47:02.998 -07 000000610 INF: FPGA: Xmit ZDACW 37398\n [Z Motor]
17-03-17 19:47:02.998 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:47:03.008 -07 000000610 INF: FPGA: 'ZDACW 37398' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:47:03.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:03.008 -07 000000501 INF: FPGA: Recv ZDACR 37398
17-03-17 19:47:03.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:03.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:47:03.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:03.168 -07 000000486 INF: FPGA: Recv ZSGSRD 35942
17-03-17 19:47:03.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:03.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:03.178 -07 000000561 INF: FPGA: Recv ZSGSRD 35939
17-03-17 19:47:03.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:03.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:03.188 -07 000000618 INF: FPGA: Recv ZSGSRD 35941
17-03-17 19:47:03.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:03.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:03.208 -07 000000561 INF: FPGA: Recv ZSGSRD 35940
17-03-17 19:47:03.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:47:03.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:03.218 -07 000000618 INF: FPGA: Recv ZSGSRD 35941
17-03-17 19:47:03.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:03.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:03.238 -07 000000561 INF: FPGA: Recv ZSGSRD 35941
17-03-17 19:47:03.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:47:03.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:03.248 -07 000000382 INF: FPGA: Recv ZSGSRD 35943
17-03-17 19:47:03.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:03.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:03.268 -07 000000486 INF: FPGA: Recv ZSGSRD 35942
17-03-17 19:47:03.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:47:03.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:03.278 -07 000000561 INF: FPGA: Recv ZSGSRD 35945
17-03-17 19:47:03.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:03.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:03.308 -07 000000541 INF: FPGA: Recv ZSGSRD 35939
17-03-17 19:47:03.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:47:03.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:03.318 -07 000000569 INF: FPGA: Recv ZPIEZORD 31963
17-03-17 19:47:03.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:03.328 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.707 V. Piezo Error = -8.8 V.
17-03-17 19:47:03.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35941 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35941 (-170.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35939 (-170.3 uncal um), Max = 35945 (-170.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 19:47:03.328 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35941, posNoise = 4, negNoise = 2
17-03-17 19:47:03.328 -07 000000610 INF: Z Motor: After move to -0.171197, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:03.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 326 ms)
17-03-17 19:47:03.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:03.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:03.328 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:03.328 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:03.328 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:47:03.328 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:47:03.328 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:47:03.328 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:03.328 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:47:03.328 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:47:03.328 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:47:03.328 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:47:03.338 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:47:03.338 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:47:03.338 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:47:03.338 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:47:03.348 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:47:03.348 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:47:03.348 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 19:47:03.348 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:47:03.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 37575 150\n [Camera]
17-03-17 19:47:03.548 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:47:03.958 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:47:03.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:47:03.958 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:03.958 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:03.958 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 19:47:03.958 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:47:03.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:47:03.958 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:03.958 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:03.958 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:47:04.148 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37575 790
17-03-17 19:47:04.298 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:47:04.338 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:47:04.338 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:47:04.338 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:04.338 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:47:04.338 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:47:04.338 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:04.338 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:47:04.338 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:47:04.338 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:47:04.348 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:47:04.498 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:47:04.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:47:04.498 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:04.498 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:04.498 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 19:47:04.498 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:47:04.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:47:04.498 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:04.498 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:04.498 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 19:47:04.688 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:47:04.688 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:47:04.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 37575 150' command took 2 ms to send, 1322 ms to get response, and 1334 ms overall
17-03-17 19:47:04.688 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171537
17-03-17 19:47:04.688 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17154 mm
17-03-17 19:47:04.688 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:47:04.688 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37472, sync = True, waitForSettling = False)
17-03-17 19:47:04.688 -07 000000501 INF: Z Motor: Moving to -0.171536 mm, started at -0.171216 mm, distance = -0.32 um
17-03-17 19:47:04.688 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:47:04.688 -07 000000431 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 19:47:04.688 -07 000000501 INF: FPGA: Xmit ZDACW 37472\n [Z Motor]
17-03-17 19:47:04.698 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:47:04.708 -07 000000501 INF: FPGA: 'ZDACW 37472' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:04.708 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:04.708 -07 000000618 INF: FPGA: Recv ZDACR 37472
17-03-17 19:47:04.718 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:04.718 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:04.718 -07 000000501 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 19:47:04.718 -07 000000438 INF: FPGA: Recv YRDPOS 127786
17-03-17 19:47:04.728 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:47:04.728 -07 000000431 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:04.728 -07 000000431 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:47:04.728 -07 000000431 INF: Y Motor: Moving 1339 steps-16
17-03-17 19:47:04.728 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:47:04.878 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:47:04.878 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:47:04.878 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:04.878 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:47:04.878 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:47:04.878 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:04.888 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:04.888 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:47:04.888 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:04.888 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:47:05.098 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:47:05.098 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 19:47:05.138 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:05.138 -07 000000382 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:47:05.148 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:47:05.148 -07 000000431 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:05.148 -07 000000431 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:47:05.148 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.837 mm, average velocity = 2.215 mm/sec
17-03-17 19:47:06.098 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:06.098 -07 000000551 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:47:06.108 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:06.108 -07 000000431 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:06.128 -07 000000431 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:47:06.128 -07 000000431 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:47:06.128 -07 000000431 INF: Y Motor: Moved to 63.2241 after 1433 ms (table move)
17-03-17 19:47:06.128 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171536 mm (DAC = 37472)
17-03-17 19:47:06.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.128 -07 000000618 INF: FPGA: Recv ZSGSRD 35986
17-03-17 19:47:06.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:47:06.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.138 -07 000000547 INF: FPGA: Recv ZSGSRD 35989
17-03-17 19:47:06.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.148 -07 000000476 INF: FPGA: Recv ZSGSRD 35989
17-03-17 19:47:06.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.158 -07 000000478 INF: FPGA: Recv ZSGSRD 35991
17-03-17 19:47:06.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.168 -07 000000431 INF: FPGA: Recv ZSGSRD 35995
17-03-17 19:47:06.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.178 -07 000000626 INF: FPGA: Recv ZSGSRD 35999
17-03-17 19:47:06.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.188 -07 000000569 INF: FPGA: Recv ZSGSRD 35994
17-03-17 19:47:06.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.198 -07 000000541 INF: FPGA: Recv ZSGSRD 35986
17-03-17 19:47:06.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.208 -07 000000382 INF: FPGA: Recv ZSGSRD 35987
17-03-17 19:47:06.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.218 -07 000000431 INF: FPGA: Recv ZSGSRD 35996
17-03-17 19:47:06.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:06.228 -07 000000618 INF: FPGA: Recv ZPIEZORD 32073
17-03-17 19:47:06.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.238 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.718 V. Piezo Error = -8.7 V.
17-03-17 19:47:06.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35991 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35990 (-170.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35986 (-170.6 uncal um), Max = 35999 (-170.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:47:06.238 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35991, posNoise = 8, negNoise = 5
17-03-17 19:47:06.238 -07 000000610 INF: Z Motor: After move to -0.171536, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:06.238 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 105 ms (allowed 150 ms), total time = 1541 ms
17-03-17 19:47:06.238 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:47:06.288 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 19:47:06.288 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:47:06.288 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.171537171205254. ----------
17-03-17 19:47:06.288 -07 000000610 INF: Cycle	30	Tile	5	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:47:06.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37296, sync = True, waitForSettling = True)
17-03-17 19:47:06.288 -07 000000610 INF: Z Motor: Moving to -0.170730 mm, started at -0.171537 mm, distance = 0.81 um
17-03-17 19:47:06.288 -07 000000610 INF: FPGA: Xmit ZDACW 37296\n [Z Motor]
17-03-17 19:47:06.288 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:47:06.298 -07 000000610 INF: FPGA: 'ZDACW 37296' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:47:06.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:06.298 -07 000000626 INF: FPGA: Recv ZDACR 37296
17-03-17 19:47:06.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:47:06.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.458 -07 000000462 INF: FPGA: Recv ZSGSRD 35865
17-03-17 19:47:06.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:06.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.468 -07 000000382 INF: FPGA: Recv ZSGSRD 35873
17-03-17 19:47:06.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.478 -07 000000429 INF: FPGA: Recv ZSGSRD 35868
17-03-17 19:47:06.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.488 -07 000000482 INF: FPGA: Recv ZSGSRD 35870
17-03-17 19:47:06.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.498 -07 000000569 INF: FPGA: Recv ZSGSRD 35864
17-03-17 19:47:06.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.508 -07 000000478 INF: FPGA: Recv ZSGSRD 35872
17-03-17 19:47:06.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.518 -07 000000382 INF: FPGA: Recv ZSGSRD 35865
17-03-17 19:47:06.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.528 -07 000000486 INF: FPGA: Recv ZSGSRD 35863
17-03-17 19:47:06.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.538 -07 000000618 INF: FPGA: Recv ZSGSRD 35863
17-03-17 19:47:06.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:06.548 -07 000000569 INF: FPGA: Recv ZSGSRD 35871
17-03-17 19:47:06.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:06.558 -07 000000478 INF: FPGA: Recv ZPIEZORD 31880
17-03-17 19:47:06.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:06.568 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.691 V. Piezo Error = -8.8 V.
17-03-17 19:47:06.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35867 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35866 (-169.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35863 (-169.8 uncal um), Max = 35873 (-169.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:47:06.568 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35867, posNoise = 6, negNoise = 4
17-03-17 19:47:06.568 -07 000000610 INF: Z Motor: After move to -0.170730, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:06.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:47:06.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:06.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:06.568 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:06.568 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:47:06.568 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:47:06.568 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:06.568 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:47:06.568 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:06.568 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 19:47:06.568 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:47:06.568 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:47:06.568 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:47:06.578 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:47:06.578 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:47:06.578 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:47:06.578 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:47:06.588 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 19:47:06.588 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:47:06.588 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:47:06.588 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:47:06.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 37472 150\n [Camera]
17-03-17 19:47:06.718 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:47:06.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:47:06.788 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:47:07.198 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:47:07.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:47:07.198 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:07.198 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:07.198 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:47:07.198 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:47:07.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:47:07.198 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:07.198 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:07.198 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:47:07.388 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37472 790
17-03-17 19:47:07.538 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:47:07.578 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:47:07.578 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:47:07.578 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:07.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:47:07.578 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:47:07.578 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:07.578 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:07.578 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:47:07.588 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:47:07.588 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:47:07.738 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:47:07.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:47:07.738 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:07.738 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:07.738 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 19:47:07.738 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:47:07.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:47:07.738 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:07.738 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:07.738 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 19:47:07.928 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:47:07.928 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:47:07.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 37472 150' command took 2 ms to send, 1324 ms to get response, and 1335 ms overall
17-03-17 19:47:07.928 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.171168
17-03-17 19:47:07.928 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17117 mm
17-03-17 19:47:07.928 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:47:07.928 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:47:07.928 -07 000000482 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 19:47:07.928 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:07.928 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37392, sync = True, waitForSettling = False)
17-03-17 19:47:07.928 -07 000000561 INF: Z Motor: Moving to -0.171170 mm, started at -0.170741 mm, distance = -0.43 um
17-03-17 19:47:07.938 -07 000000561 INF: FPGA: Xmit ZDACW 37392\n [Z Motor]
17-03-17 19:47:07.938 -07 000000547 INF: FPGA: Recv YRDPOS 129483
17-03-17 19:47:07.938 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:47:07.938 -07 000000482 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:07.938 -07 000000482 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:47:07.938 -07 000000482 INF: Y Motor: Moving 1342 steps-17
17-03-17 19:47:07.938 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:47:07.948 -07 000000561 INF: FPGA: 'ZDACW 37392' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:07.948 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:07.948 -07 000000547 INF: FPGA: Recv ZDACR 37392
17-03-17 19:47:07.958 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:07.958 -07 000000561 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 19:47:07.958 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:47:08.088 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.983999,
17-03-17 19:47:08.118 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:47:08.118 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:47:08.118 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:08.118 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:47:08.118 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:47:08.118 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:08.128 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:47:08.128 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:47:08.128 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:47:08.138 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:47:08.328 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 19:47:08.328 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 19:47:08.368 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:08.368 -07 000000431 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:47:08.378 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:47:08.378 -07 000000482 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:08.378 -07 000000482 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 19:47:08.378 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.838 mm, average velocity = 2.117 mm/sec
17-03-17 19:47:09.328 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:09.328 -07 000000476 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:47:09.338 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:09.338 -07 000000482 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:09.358 -07 000000482 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:47:09.358 -07 000000482 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:47:09.358 -07 000000482 INF: Y Motor: Moved to 64.0571 after 1421 ms (table move)
17-03-17 19:47:09.358 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171170 mm (DAC = 37392)
17-03-17 19:47:09.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.358 -07 000000438 INF: FPGA: Recv ZSGSRD 35931
17-03-17 19:47:09.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:47:09.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.368 -07 000000593 INF: FPGA: Recv ZSGSRD 35928
17-03-17 19:47:09.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.378 -07 000000478 INF: FPGA: Recv ZSGSRD 35940
17-03-17 19:47:09.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.388 -07 000000551 INF: FPGA: Recv ZSGSRD 35939
17-03-17 19:47:09.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.398 -07 000000482 INF: FPGA: Recv ZSGSRD 35932
17-03-17 19:47:09.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.408 -07 000000618 INF: FPGA: Recv ZSGSRD 35942
17-03-17 19:47:09.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:47:09.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.418 -07 000000626 INF: FPGA: Recv ZSGSRD 35927
17-03-17 19:47:09.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.428 -07 000000424 INF: FPGA: Recv ZSGSRD 35938
17-03-17 19:47:09.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.438 -07 000000482 INF: FPGA: Recv ZSGSRD 35929
17-03-17 19:47:09.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.448 -07 000000429 INF: FPGA: Recv ZSGSRD 35935
17-03-17 19:47:09.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:09.458 -07 000000547 INF: FPGA: Recv ZPIEZORD 32012
17-03-17 19:47:09.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.468 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.706 V. Piezo Error = -8.7 V.
17-03-17 19:47:09.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35934 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35934 (-170.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35927 (-170.2 uncal um), Max = 35942 (-170.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:47:09.468 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35934, posNoise = 8, negNoise = 7
17-03-17 19:47:09.468 -07 000000610 INF: Z Motor: After move to -0.171170, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:09.468 -07 000000610 INF: Z Motor: Settle wait time = 1423 ms, measure time = 108 ms (allowed 150 ms), total time = 1531 ms
17-03-17 19:47:09.468 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:47:09.518 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 19:47:09.518 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:47:09.518 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.171170991113173. ----------
17-03-17 19:47:09.518 -07 000000610 INF: Cycle	30	Tile	6	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:47:09.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37215, sync = True, waitForSettling = True)
17-03-17 19:47:09.518 -07 000000610 INF: Z Motor: Moving to -0.170359 mm, started at -0.171171 mm, distance = 0.81 um
17-03-17 19:47:09.518 -07 000000610 INF: FPGA: Xmit ZDACW 37215\n [Z Motor]
17-03-17 19:47:09.518 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:47:09.528 -07 000000610 INF: FPGA: 'ZDACW 37215' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:47:09.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:09.528 -07 000000618 INF: FPGA: Recv ZDACR 37215
17-03-17 19:47:09.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:47:09.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.688 -07 000000382 INF: FPGA: Recv ZSGSRD 35807
17-03-17 19:47:09.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:09.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.698 -07 000000431 INF: FPGA: Recv ZSGSRD 35817
17-03-17 19:47:09.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.708 -07 000000547 INF: FPGA: Recv ZSGSRD 35818
17-03-17 19:47:09.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.718 -07 000000478 INF: FPGA: Recv ZSGSRD 35805
17-03-17 19:47:09.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.728 -07 000000424 INF: FPGA: Recv ZSGSRD 35805
17-03-17 19:47:09.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.738 -07 000000382 INF: FPGA: Recv ZSGSRD 35809
17-03-17 19:47:09.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.748 -07 000000541 INF: FPGA: Recv ZSGSRD 35809
17-03-17 19:47:09.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.758 -07 000000593 INF: FPGA: Recv ZSGSRD 35807
17-03-17 19:47:09.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.768 -07 000000486 INF: FPGA: Recv ZSGSRD 35809
17-03-17 19:47:09.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:09.778 -07 000000438 INF: FPGA: Recv ZSGSRD 35815
17-03-17 19:47:09.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:09.788 -07 000000551 INF: FPGA: Recv ZPIEZORD 31826
17-03-17 19:47:09.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:09.798 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.679 V. Piezo Error = -8.8 V.
17-03-17 19:47:09.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35810 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35809 (-169.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35805 (-169.5 uncal um), Max = 35818 (-169.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:47:09.798 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35810, posNoise = 8, negNoise = 5
17-03-17 19:47:09.798 -07 000000610 INF: Z Motor: After move to -0.170359, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:09.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:47:09.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:09.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:09.798 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:47:09.798 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:09.798 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:09.798 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:47:09.798 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:09.798 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:47:09.798 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:47:09.798 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:47:09.798 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:47:09.798 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:47:09.808 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:47:09.808 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:47:09.808 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:47:09.808 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:47:09.818 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:47:09.818 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:47:09.818 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:47:09.818 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:47:09.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 37392 150\n [Camera]
17-03-17 19:47:10.028 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:47:10.428 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:47:10.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:47:10.428 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:10.428 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:10.428 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 19:47:10.428 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:47:10.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:47:10.428 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:10.438 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:10.438 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 19:47:10.618 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37392 790
17-03-17 19:47:10.768 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:47:10.818 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:47:10.818 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:47:10.818 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:10.818 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:47:10.818 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:47:10.818 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:47:10.818 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:10.828 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:10.828 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:47:10.828 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:47:10.968 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-17 19:47:10.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-17 19:47:10.968 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:10.968 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:10.968 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 19:47:10.968 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-17 19:47:10.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-17 19:47:10.978 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:10.978 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:10.978 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-17 19:47:11.158 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:47:11.158 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:47:11.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 37392 150' command took 2 ms to send, 1325 ms to get response, and 1334 ms overall
17-03-17 19:47:11.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:47:11.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.170374388807595. ------
17-03-17 19:47:11.168 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:47:11.168 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17679 mm
17-03-17 19:47:11.168 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:47:11.168 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:47:11.168 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:47:11.168 -07 000000501 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 19:47:11.168 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38620, sync = True, waitForSettling = False)
17-03-17 19:47:11.168 -07 000000482 INF: Z Motor: Moving to -0.176791 mm, started at -0.170374 mm, distance = -6.42 um
17-03-17 19:47:11.178 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:47:11.178 -07 000000482 INF: FPGA: Xmit ZDACW 38620\n [Z Motor]
17-03-17 19:47:11.178 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:47:11.188 -07 000000482 INF: FPGA: 'ZDACW 38620' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:11.188 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:11.188 -07 000000569 INF: FPGA: Recv YRDPOS 131189
17-03-17 19:47:11.198 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:47:11.198 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:47:11.198 -07 000000501 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:11.198 -07 000000501 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:47:11.198 -07 000000501 INF: Y Motor: Moving 1337 steps-11
17-03-17 19:47:11.208 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:11.208 -07 000000382 INF: FPGA: Recv ZDACR 38620
17-03-17 19:47:11.218 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:47:11.218 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:47:11.218 -07 000000482 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 19:47:11.348 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:47:11.348 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:47:11.348 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:11.348 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:47:11.358 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:47:11.358 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:11.358 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:11.358 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:47:11.358 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:47:11.368 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:47:11.398 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:47:11.398 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:47:11.588 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 19:47:11.588 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:47:11.628 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:11.628 -07 000000462 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:47:11.638 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:47:11.638 -07 000000501 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:11.638 -07 000000501 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:47:11.638 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 19:47:11.718 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:47:11.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:47:12.588 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:12.588 -07 000000482 INF: FPGA: Recv YRDPOS 132872
17-03-17 19:47:12.598 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:12.598 -07 000000501 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:12.618 -07 000000501 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:47:12.618 -07 000000501 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:47:12.618 -07 000000501 INF: Y Motor: Moved to 64.8789 after 1446 ms (table move)
17-03-17 19:47:12.618 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176791 mm (DAC = 38620)
17-03-17 19:47:12.618 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:12.628 -07 000000478 INF: FPGA: Recv ZSGSRD 36815
17-03-17 19:47:12.628 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:47:12.628 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:12.628 -07 000000438 INF: FPGA: Recv ZSGSRD 36804
17-03-17 19:47:12.638 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:12.638 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:12.638 -07 000000547 INF: FPGA: Recv ZSGSRD 36810
17-03-17 19:47:12.648 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:12.648 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:12.648 -07 000000618 INF: FPGA: Recv ZSGSRD 36811
17-03-17 19:47:12.658 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:12.658 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:12.658 -07 000000476 INF: FPGA: Recv ZSGSRD 36813
17-03-17 19:47:12.668 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:12.668 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:12.668 -07 000000501 INF: FPGA: Recv ZSGSRD 36808
17-03-17 19:47:12.678 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:12.678 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:12.678 -07 000000382 INF: FPGA: Recv ZSGSRD 36811
17-03-17 19:47:12.688 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:12.688 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:12.688 -07 000000541 INF: FPGA: Recv ZSGSRD 36811
17-03-17 19:47:12.698 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:12.698 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:12.698 -07 000000462 INF: FPGA: Recv ZSGSRD 36803
17-03-17 19:47:12.708 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:12.708 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:12.708 -07 000000593 INF: FPGA: Recv ZSGSRD 36803
17-03-17 19:47:12.718 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:12.718 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:12.718 -07 000000501 INF: FPGA: Recv ZPIEZORD 33157
17-03-17 19:47:12.728 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:12.728 -07 000000561 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.893 V. Piezo Error = -8.1 V.
17-03-17 19:47:12.728 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36809 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36810 (-175.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36803 (-175.9 uncal um), Max = 36815 (-175.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:47:12.728 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36809, posNoise = 6, negNoise = 6
17-03-17 19:47:12.728 -07 000000561 INF: Z Motor: After move to -0.176791, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:12.728 -07 000000561 INF: Z Motor: Settle wait time = 1448 ms, measure time = 103 ms (allowed 150 ms), total time = 1551 ms
17-03-17 19:47:12.728 -07 000000561 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:47:12.778 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 19:47:12.778 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:47:12.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:12.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:12.778 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:12.778 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:12.778 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:47:12.778 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:12.778 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:47:12.778 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:47:12.788 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:47:12.788 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:47:12.798 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 19:47:12.798 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 19:47:12.798 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:47:12.848 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 19:47:13.048 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 19:47:13.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 19:47:13.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:47:13.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 19:47:13.078 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:47:13.078 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 19:47:13.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 19:47:13.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 19:47:13.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:13.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:47:13.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:47:13.278 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:47:13.278 -07 000000618 INF: Autofocus start
17-03-17 19:47:13.278 -07 000000618 INF: MeasureProfile start
17-03-17 19:47:13.278 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:47:13.288 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:47:13.288 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:47:13.298 -07 000000618 INF: MeasureProfile done
17-03-17 19:47:13.298 -07 000000618 INF: X=64  Z correction [um]=0.2557664
17-03-17 19:47:13.298 -07 000000618 INF: Autofocus finished
17-03-17 19:47:13.448 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.981281,
17-03-17 19:47:13.488 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:47:13.488 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:47:13.488 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.176792176737214. ----------
17-03-17 19:47:13.488 -07 000000610 INF: Cycle	30	Tile	7	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:47:13.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37188, sync = True, waitForSettling = True)
17-03-17 19:47:13.498 -07 000000610 INF: Z Motor: Moving to -0.170236 mm, started at -0.176792 mm, distance = 6.56 um
17-03-17 19:47:13.498 -07 000000610 INF: FPGA: Xmit ZDACW 37188\n [Z Motor]
17-03-17 19:47:13.498 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 19:47:13.508 -07 000000610 INF: FPGA: 'ZDACW 37188' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:47:13.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:13.508 -07 000000482 INF: FPGA: Recv ZDACR 37188
17-03-17 19:47:13.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:13.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:47:13.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:13.668 -07 000000462 INF: FPGA: Recv ZSGSRD 35782
17-03-17 19:47:13.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:13.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:13.678 -07 000000618 INF: FPGA: Recv ZSGSRD 35788
17-03-17 19:47:13.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:13.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:13.698 -07 000000569 INF: FPGA: Recv ZSGSRD 35791
17-03-17 19:47:13.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:47:13.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:13.708 -07 000000462 INF: FPGA: Recv ZSGSRD 35788
17-03-17 19:47:13.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:13.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:13.718 -07 000000382 INF: FPGA: Recv ZSGSRD 35796
17-03-17 19:47:13.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:13.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:13.728 -07 000000486 INF: FPGA: Recv ZSGSRD 35788
17-03-17 19:47:13.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:13.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:13.738 -07 000000424 INF: FPGA: Recv ZSGSRD 35790
17-03-17 19:47:13.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:13.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:13.748 -07 000000569 INF: FPGA: Recv ZSGSRD 35792
17-03-17 19:47:13.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:13.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:13.758 -07 000000593 INF: FPGA: Recv ZSGSRD 35790
17-03-17 19:47:13.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:13.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:13.768 -07 000000476 INF: FPGA: Recv ZSGSRD 35788
17-03-17 19:47:13.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:13.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:13.778 -07 000000486 INF: FPGA: Recv ZPIEZORD 31800
17-03-17 19:47:13.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:13.788 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.675 V. Piezo Error = -8.8 V.
17-03-17 19:47:13.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35789 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35789 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35782 (-169.3 uncal um), Max = 35796 (-169.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:47:13.788 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35789, posNoise = 7, negNoise = 7
17-03-17 19:47:13.788 -07 000000610 INF: Z Motor: After move to -0.170236, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:13.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 19:47:13.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:13.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:13.788 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:13.788 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:47:13.788 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:13.788 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:47:13.788 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:47:13.788 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:47:13.788 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:47:13.788 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:47:13.788 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:47:13.788 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:13.798 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:47:13.798 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:47:13.798 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:47:13.798 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:47:13.808 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:47:13.808 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:47:13.808 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:47:13.808 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:47:13.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 37365 150\n [Camera]
17-03-17 19:47:14.008 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:47:14.408 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:47:14.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:47:14.408 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:14.408 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:14.418 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-17 19:47:14.418 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:47:14.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:47:14.418 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:14.418 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:14.418 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) start.
17-03-17 19:47:14.608 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37365 790
17-03-17 19:47:14.758 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:47:14.788 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:47:14.788 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:47:14.788 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:14.798 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:47:14.798 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:47:14.798 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:47:14.938 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-17 19:47:14.938 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:14.938 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:47:14.948 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-17 19:47:14.948 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:47:14.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:47:14.948 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:14.948 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:47:14.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:47:14.958 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:14.958 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:14.958 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:14.958 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:47:14.958 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:47:15.148 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1330
17-03-17 19:47:15.148 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:47:15.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 37365 150' command took 2 ms to send, 1331 ms to get response, and 1337 ms overall
17-03-17 19:47:15.148 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170741
17-03-17 19:47:15.148 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17074 mm
17-03-17 19:47:15.148 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:47:15.148 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:47:15.148 -07 000000482 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 19:47:15.148 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:15.148 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37298, sync = True, waitForSettling = False)
17-03-17 19:47:15.148 -07 000000569 INF: Z Motor: Moving to -0.170739 mm, started at -0.170239 mm, distance = -0.50 um
17-03-17 19:47:15.148 -07 000000618 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:47:15.158 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:47:15.158 -07 000000482 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:15.158 -07 000000569 INF: FPGA: Xmit ZDACW 37298\n [Z Motor]
17-03-17 19:47:15.158 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:47:15.158 -07 000000482 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:47:15.158 -07 000000482 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:47:15.168 -07 000000569 INF: FPGA: 'ZDACW 37298' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:47:15.168 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:47:15.178 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:15.178 -07 000000424 INF: FPGA: Recv ZDACR 37298
17-03-17 19:47:15.188 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:47:15.188 -07 000000569 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 19:47:15.338 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:47:15.338 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:47:15.338 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:15.338 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:47:15.338 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:47:15.338 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:15.348 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:15.348 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:15.348 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:47:15.348 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:47:15.548 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 19:47:15.548 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 386 ms overall
17-03-17 19:47:15.578 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:15.578 -07 000000501 INF: FPGA: Recv YRDPOS 134582
17-03-17 19:47:15.588 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:47:15.588 -07 000000482 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:15.588 -07 000000482 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:47:15.588 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.186 mm/sec
17-03-17 19:47:16.538 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:16.538 -07 000000561 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:47:16.548 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.548 -07 000000482 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:16.568 -07 000000482 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:47:16.568 -07 000000482 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:47:16.568 -07 000000482 INF: Y Motor: Moved to 65.7144 after 1418 ms (table move)
17-03-17 19:47:16.568 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170739 mm (DAC = 37298)
17-03-17 19:47:16.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.578 -07 000000429 INF: FPGA: Recv ZSGSRD 35864
17-03-17 19:47:16.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:47:16.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.578 -07 000000551 INF: FPGA: Recv ZSGSRD 35871
17-03-17 19:47:16.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.588 -07 000000618 INF: FPGA: Recv ZSGSRD 35871
17-03-17 19:47:16.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.598 -07 000000478 INF: FPGA: Recv ZSGSRD 35866
17-03-17 19:47:16.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.608 -07 000000438 INF: FPGA: Recv ZSGSRD 35873
17-03-17 19:47:16.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.618 -07 000000429 INF: FPGA: Recv ZSGSRD 35869
17-03-17 19:47:16.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.628 -07 000000551 INF: FPGA: Recv ZSGSRD 35863
17-03-17 19:47:16.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.638 -07 000000593 INF: FPGA: Recv ZSGSRD 35874
17-03-17 19:47:16.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.648 -07 000000462 INF: FPGA: Recv ZSGSRD 35867
17-03-17 19:47:16.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.658 -07 000000438 INF: FPGA: Recv ZSGSRD 35868
17-03-17 19:47:16.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:16.668 -07 000000618 INF: FPGA: Recv ZPIEZORD 31942
17-03-17 19:47:16.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.678 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.691 V. Piezo Error = -8.7 V.
17-03-17 19:47:16.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35869 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35868 (-169.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35863 (-169.8 uncal um), Max = 35874 (-169.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:47:16.678 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35869, posNoise = 5, negNoise = 6
17-03-17 19:47:16.678 -07 000000610 INF: Z Motor: After move to -0.170739, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:16.678 -07 000000610 INF: Z Motor: Settle wait time = 1421 ms, measure time = 103 ms (allowed 150 ms), total time = 1524 ms
17-03-17 19:47:16.678 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:47:16.718 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:47:16.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:47:16.728 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1576 ms
17-03-17 19:47:16.728 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:47:16.728 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.170753417323959. ----------
17-03-17 19:47:16.728 -07 000000610 INF: Cycle	30	Tile	8	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:47:16.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37122, sync = True, waitForSettling = True)
17-03-17 19:47:16.728 -07 000000610 INF: Z Motor: Moving to -0.169934 mm, started at -0.170753 mm, distance = 0.82 um
17-03-17 19:47:16.728 -07 000000610 INF: FPGA: Xmit ZDACW 37122\n [Z Motor]
17-03-17 19:47:16.728 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:47:16.738 -07 000000610 INF: FPGA: 'ZDACW 37122' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:47:16.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:16.738 -07 000000486 INF: FPGA: Recv ZDACR 37122
17-03-17 19:47:16.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:47:16.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.898 -07 000000462 INF: FPGA: Recv ZSGSRD 35747
17-03-17 19:47:16.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:16.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.908 -07 000000431 INF: FPGA: Recv ZSGSRD 35737
17-03-17 19:47:16.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.918 -07 000000429 INF: FPGA: Recv ZSGSRD 35744
17-03-17 19:47:16.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.928 -07 000000476 INF: FPGA: Recv ZSGSRD 35746
17-03-17 19:47:16.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.938 -07 000000569 INF: FPGA: Recv ZSGSRD 35744
17-03-17 19:47:16.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.948 -07 000000593 INF: FPGA: Recv ZSGSRD 35750
17-03-17 19:47:16.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.958 -07 000000541 INF: FPGA: Recv ZSGSRD 35740
17-03-17 19:47:16.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.968 -07 000000438 INF: FPGA: Recv ZSGSRD 35737
17-03-17 19:47:16.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.978 -07 000000462 INF: FPGA: Recv ZSGSRD 35740
17-03-17 19:47:16.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:16.988 -07 000000382 INF: FPGA: Recv ZSGSRD 35745
17-03-17 19:47:16.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:16.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:16.998 -07 000000561 INF: FPGA: Recv ZPIEZORD 31763
17-03-17 19:47:17.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:17.008 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.664 V. Piezo Error = -8.8 V.
17-03-17 19:47:17.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35743 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35744 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35737 (-169.0 uncal um), Max = 35750 (-169.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:47:17.008 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35743, posNoise = 7, negNoise = 6
17-03-17 19:47:17.008 -07 000000610 INF: Z Motor: After move to -0.169934, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:17.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:47:17.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:17.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:17.008 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:17.008 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:47:17.008 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:17.008 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:47:17.008 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:47:17.008 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:47:17.008 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:47:17.008 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:47:17.008 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:47:17.008 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:17.018 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:47:17.018 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:47:17.018 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:47:17.018 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:47:17.018 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:47:17.018 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:47:17.028 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:47:17.028 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:47:17.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 37298 150\n [Camera]
17-03-17 19:47:17.228 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:47:17.628 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:47:17.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:47:17.638 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:17.638 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:47:17.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:47:17.638 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:17.748 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:17.748 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 19:47:17.748 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:17.748 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:47:17.828 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37298 790
17-03-17 19:47:17.978 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:47:18.118 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 19:47:18.118 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 19:47:18.118 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:18.118 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 19:47:18.118 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 19:47:18.118 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:18.128 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:47:18.128 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 494 ms.
17-03-17 19:47:18.128 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:47:18.138 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 499 ms.
17-03-17 19:47:18.168 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1137
17-03-17 19:47:18.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1137
17-03-17 19:47:18.168 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:18.178 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1137
17-03-17 19:47:18.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1137
17-03-17 19:47:18.178 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:18.178 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:18.178 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 19:47:18.178 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:18.178 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:47:18.358 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:47:18.358 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:47:18.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 37298 150' command took 2 ms to send, 1328 ms to get response, and 1334 ms overall
17-03-17 19:47:18.368 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.170320
17-03-17 19:47:18.368 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17032 mm
17-03-17 19:47:18.368 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:47:18.368 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37206, sync = True, waitForSettling = False)
17-03-17 19:47:18.368 -07 000000561 INF: Z Motor: Moving to -0.170318 mm, started at -0.169944 mm, distance = -0.37 um
17-03-17 19:47:18.368 -07 000000561 INF: FPGA: Xmit ZDACW 37206\n [Z Motor]
17-03-17 19:47:18.368 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:47:18.368 -07 000000618 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 19:47:18.368 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:47:18.378 -07 000000561 INF: FPGA: 'ZDACW 37206' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:47:18.378 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:18.378 -07 000000478 INF: FPGA: Recv YRDPOS 134583
17-03-17 19:47:18.388 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:47:18.388 -07 000000618 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:18.388 -07 000000618 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:47:18.388 -07 000000618 INF: Y Motor: Moving 1341 steps-18
17-03-17 19:47:18.388 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:18.388 -07 000000501 INF: FPGA: Recv ZDACR 37206
17-03-17 19:47:18.398 -07 000000561 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:47:18.398 -07 000000561 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 19:47:18.398 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:47:18.568 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:47:18.568 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:47:18.568 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:18.578 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:47:18.578 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:47:18.578 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 19:47:18.578 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:47:18.578 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:18.578 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:47:18.588 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 19:47:18.768 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:47:18.768 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:47:18.808 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.986717,
17-03-17 19:47:18.818 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:18.818 -07 000000429 INF: FPGA: Recv YRDPOS 136272
17-03-17 19:47:18.828 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:47:18.828 -07 000000618 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:18.828 -07 000000618 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:47:18.828 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.160 mm/sec
17-03-17 19:47:19.778 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:19.778 -07 000000593 INF: FPGA: Recv YRDPOS 136272
17-03-17 19:47:19.788 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:19.788 -07 000000618 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:19.808 -07 000000618 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:47:19.808 -07 000000618 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:47:19.808 -07 000000618 INF: Y Motor: Moved to 66.5391 after 1435 ms (table move)
17-03-17 19:47:19.808 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170318 mm (DAC = 37206)
17-03-17 19:47:19.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:19.808 -07 000000424 INF: FPGA: Recv ZSGSRD 35804
17-03-17 19:47:19.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:47:19.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:19.818 -07 000000476 INF: FPGA: Recv ZSGSRD 35801
17-03-17 19:47:19.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:19.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:19.828 -07 000000561 INF: FPGA: Recv ZSGSRD 35806
17-03-17 19:47:19.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:19.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:19.838 -07 000000501 INF: FPGA: Recv ZSGSRD 35806
17-03-17 19:47:19.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:19.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:19.848 -07 000000618 INF: FPGA: Recv ZSGSRD 35805
17-03-17 19:47:19.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:19.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:19.858 -07 000000593 INF: FPGA: Recv ZSGSRD 35795
17-03-17 19:47:19.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:19.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:19.868 -07 000000476 INF: FPGA: Recv ZSGSRD 35805
17-03-17 19:47:19.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:19.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:19.878 -07 000000541 INF: FPGA: Recv ZSGSRD 35801
17-03-17 19:47:19.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:19.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:19.888 -07 000000569 INF: FPGA: Recv ZSGSRD 35805
17-03-17 19:47:19.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:19.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:19.898 -07 000000618 INF: FPGA: Recv ZSGSRD 35808
17-03-17 19:47:19.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:19.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:19.908 -07 000000547 INF: FPGA: Recv ZPIEZORD 31843
17-03-17 19:47:19.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:19.918 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -8.7 V.
17-03-17 19:47:19.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35804 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35805 (-169.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35795 (-169.4 uncal um), Max = 35808 (-169.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:47:19.918 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35804, posNoise = 4, negNoise = 9
17-03-17 19:47:19.918 -07 000000610 INF: Z Motor: After move to -0.170318, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:19.918 -07 000000610 INF: Z Motor: Settle wait time = 1438 ms, measure time = 106 ms (allowed 150 ms), total time = 1544 ms
17-03-17 19:47:19.918 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:47:19.968 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 19:47:19.968 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:47:19.968 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.170335843534744. ----------
17-03-17 19:47:19.968 -07 000000610 INF: Cycle	30	Tile	9	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:47:19.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37030, sync = True, waitForSettling = True)
17-03-17 19:47:19.968 -07 000000610 INF: Z Motor: Moving to -0.169512 mm, started at -0.170336 mm, distance = 0.82 um
17-03-17 19:47:19.968 -07 000000610 INF: FPGA: Xmit ZDACW 37030\n [Z Motor]
17-03-17 19:47:19.968 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:47:19.978 -07 000000610 INF: FPGA: 'ZDACW 37030' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:47:19.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:19.978 -07 000000486 INF: FPGA: Recv ZDACR 37030
17-03-17 19:47:19.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:19.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:47:20.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:20.138 -07 000000561 INF: FPGA: Recv ZSGSRD 35683
17-03-17 19:47:20.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:20.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:20.148 -07 000000626 INF: FPGA: Recv ZSGSRD 35680
17-03-17 19:47:20.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:20.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:20.158 -07 000000593 INF: FPGA: Recv ZSGSRD 35676
17-03-17 19:47:20.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:20.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:20.168 -07 000000431 INF: FPGA: Recv ZSGSRD 35676
17-03-17 19:47:20.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:20.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:20.178 -07 000000486 INF: FPGA: Recv ZSGSRD 35674
17-03-17 19:47:20.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:20.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:20.188 -07 000000482 INF: FPGA: Recv ZSGSRD 35679
17-03-17 19:47:20.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:20.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:20.198 -07 000000424 INF: FPGA: Recv ZSGSRD 35676
17-03-17 19:47:20.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:20.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:20.208 -07 000000618 INF: FPGA: Recv ZSGSRD 35682
17-03-17 19:47:20.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:20.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:20.218 -07 000000429 INF: FPGA: Recv ZSGSRD 35685
17-03-17 19:47:20.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:20.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:20.228 -07 000000626 INF: FPGA: Recv ZSGSRD 35679
17-03-17 19:47:20.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:20.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:20.238 -07 000000593 INF: FPGA: Recv ZPIEZORD 31632
17-03-17 19:47:20.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:20.248 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -8.9 V.
17-03-17 19:47:20.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35679 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35679 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35674 (-168.6 uncal um), Max = 35685 (-168.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:47:20.248 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35679, posNoise = 6, negNoise = 5
17-03-17 19:47:20.248 -07 000000610 INF: Z Motor: After move to -0.169512, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:20.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:47:20.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:20.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:20.248 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:20.248 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:47:20.248 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:47:20.248 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:20.248 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:47:20.248 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:20.248 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:47:20.248 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:47:20.248 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:47:20.248 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:47:20.258 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:47:20.258 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:47:20.258 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:47:20.258 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:47:20.268 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:47:20.268 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:47:20.268 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:47:20.268 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:47:20.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 37206 150\n [Camera]
17-03-17 19:47:20.478 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:47:20.878 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:47:20.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:47:20.878 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:20.878 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:20.878 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:47:20.878 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:47:20.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:47:20.878 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:20.878 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:20.878 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:47:21.068 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37206 791
17-03-17 19:47:21.218 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:47:21.258 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:47:21.258 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:47:21.258 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:47:21.258 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:21.258 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:47:21.258 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:21.268 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:47:21.268 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:47:21.268 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:47:21.278 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:47:21.418 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:47:21.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:47:21.418 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:21.418 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:21.418 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:47:21.418 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:47:21.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:47:21.418 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:21.418 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:21.418 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:47:21.608 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:47:21.608 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:47:21.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 37206 150' command took 2 ms to send, 1325 ms to get response, and 1334 ms overall
17-03-17 19:47:21.608 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.170326
17-03-17 19:47:21.608 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17033 mm
17-03-17 19:47:21.608 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:47:21.608 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:47:21.608 -07 000000476 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 19:47:21.618 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:21.618 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 37208, sync = True, waitForSettling = False)
17-03-17 19:47:21.618 -07 000000438 INF: Z Motor: Moving to -0.170327 mm, started at -0.169533 mm, distance = -0.79 um
17-03-17 19:47:21.618 -07 000000486 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:47:21.628 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:21.628 -07 000000476 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:21.628 -07 000000438 INF: FPGA: Xmit ZDACW 37208\n [Z Motor]
17-03-17 19:47:21.628 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:47:21.628 -07 000000476 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:47:21.628 -07 000000476 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:47:21.638 -07 000000438 INF: FPGA: 'ZDACW 37208' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:47:21.638 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:47:21.648 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:21.648 -07 000000486 INF: FPGA: Recv ZDACR 37208
17-03-17 19:47:21.658 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:47:21.658 -07 000000438 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 19:47:21.718 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:47:21.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:47:21.808 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:47:21.808 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:47:21.808 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:21.808 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:47:21.808 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:47:21.808 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:21.808 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:47:21.808 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:21.808 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:47:21.818 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:47:22.008 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:47:22.008 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 19:47:22.048 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:22.048 -07 000000541 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:47:22.058 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:47:22.058 -07 000000476 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:22.058 -07 000000476 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 19:47:22.058 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.844 mm, average velocity = 2.208 mm/sec
17-03-17 19:47:23.008 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:23.008 -07 000000551 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:47:23.018 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:23.018 -07 000000476 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:23.038 -07 000000476 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:47:23.038 -07 000000476 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:47:23.038 -07 000000476 INF: Y Motor: Moved to 67.3721 after 1421 ms (table move)
17-03-17 19:47:23.038 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170327 mm (DAC = 37208)
17-03-17 19:47:23.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.038 -07 000000551 INF: FPGA: Recv ZSGSRD 35804
17-03-17 19:47:23.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:47:23.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.048 -07 000000478 INF: FPGA: Recv ZSGSRD 35799
17-03-17 19:47:23.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.058 -07 000000424 INF: FPGA: Recv ZSGSRD 35799
17-03-17 19:47:23.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.068 -07 000000462 INF: FPGA: Recv ZSGSRD 35807
17-03-17 19:47:23.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.078 -07 000000431 INF: FPGA: Recv ZSGSRD 35810
17-03-17 19:47:23.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.088 -07 000000551 INF: FPGA: Recv ZSGSRD 35807
17-03-17 19:47:23.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.098 -07 000000478 INF: FPGA: Recv ZSGSRD 35807
17-03-17 19:47:23.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.108 -07 000000424 INF: FPGA: Recv ZSGSRD 35804
17-03-17 19:47:23.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.118 -07 000000626 INF: FPGA: Recv ZSGSRD 35802
17-03-17 19:47:23.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.128 -07 000000476 INF: FPGA: Recv ZSGSRD 35800
17-03-17 19:47:23.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:23.138 -07 000000551 INF: FPGA: Recv ZPIEZORD 31858
17-03-17 19:47:23.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.148 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -8.7 V.
17-03-17 19:47:23.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35804 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35804 (-169.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35799 (-169.4 uncal um), Max = 35810 (-169.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:47:23.148 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35804, posNoise = 6, negNoise = 5
17-03-17 19:47:23.148 -07 000000610 INF: Z Motor: After move to -0.170327, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:23.148 -07 000000610 INF: Z Motor: Settle wait time = 1423 ms, measure time = 107 ms (allowed 150 ms), total time = 1530 ms
17-03-17 19:47:23.148 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:47:23.198 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 19:47:23.198 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:47:23.198 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.170335843534744. ----------
17-03-17 19:47:23.198 -07 000000610 INF: Cycle	30	Tile	10	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:47:23.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37031, sync = True, waitForSettling = True)
17-03-17 19:47:23.198 -07 000000610 INF: Z Motor: Moving to -0.169517 mm, started at -0.170336 mm, distance = 0.82 um
17-03-17 19:47:23.198 -07 000000610 INF: FPGA: Xmit ZDACW 37031\n [Z Motor]
17-03-17 19:47:23.198 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:47:23.208 -07 000000610 INF: FPGA: 'ZDACW 37031' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:47:23.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:23.208 -07 000000438 INF: FPGA: Recv ZDACR 37031
17-03-17 19:47:23.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:47:23.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.368 -07 000000569 INF: FPGA: Recv ZSGSRD 35678
17-03-17 19:47:23.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:23.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.378 -07 000000547 INF: FPGA: Recv ZSGSRD 35680
17-03-17 19:47:23.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.388 -07 000000482 INF: FPGA: Recv ZSGSRD 35677
17-03-17 19:47:23.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.398 -07 000000541 INF: FPGA: Recv ZSGSRD 35682
17-03-17 19:47:23.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.408 -07 000000476 INF: FPGA: Recv ZSGSRD 35677
17-03-17 19:47:23.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:47:23.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.418 -07 000000501 INF: FPGA: Recv ZSGSRD 35676
17-03-17 19:47:23.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.428 -07 000000551 INF: FPGA: Recv ZSGSRD 35679
17-03-17 19:47:23.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.438 -07 000000424 INF: FPGA: Recv ZSGSRD 35674
17-03-17 19:47:23.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.448 -07 000000429 INF: FPGA: Recv ZSGSRD 35679
17-03-17 19:47:23.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:23.458 -07 000000431 INF: FPGA: Recv ZSGSRD 35675
17-03-17 19:47:23.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:23.468 -07 000000501 INF: FPGA: Recv ZPIEZORD 31688
17-03-17 19:47:23.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:23.478 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -8.8 V.
17-03-17 19:47:23.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35678 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35678 (-168.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35674 (-168.6 uncal um), Max = 35682 (-168.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:47:23.478 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35678, posNoise = 4, negNoise = 4
17-03-17 19:47:23.478 -07 000000610 INF: Z Motor: After move to -0.169517, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:23.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:47:23.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:23.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:23.478 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:23.478 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:23.478 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:47:23.478 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:23.478 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:47:23.478 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:47:23.478 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:47:23.478 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:47:23.478 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:47:23.478 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:47:23.478 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:47:23.478 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:47:23.488 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:47:23.488 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:47:23.498 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:47:23.498 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:47:23.498 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:47:23.498 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:47:23.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 37208 150\n [Camera]
17-03-17 19:47:23.698 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:47:24.108 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:47:24.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:47:24.108 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:24.108 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:24.108 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:47:24.108 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:47:24.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:47:24.108 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:24.108 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:24.108 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:47:24.178 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.985358,
17-03-17 19:47:24.298 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37208 790
17-03-17 19:47:24.448 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:47:24.508 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:47:24.508 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:47:24.508 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:24.508 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:47:24.508 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:47:24.508 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:24.508 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:24.508 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:47:24.518 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:24.518 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 19:47:24.648 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1137
17-03-17 19:47:24.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1137
17-03-17 19:47:24.648 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:24.648 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:24.648 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:47:24.648 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1137
17-03-17 19:47:24.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1137
17-03-17 19:47:24.648 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:24.648 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:24.648 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:47:24.838 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:47:24.838 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:47:24.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 37208 150' command took 2 ms to send, 1324 ms to get response, and 1335 ms overall
17-03-17 19:47:24.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:47:24.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.169526392804882. ------
17-03-17 19:47:24.838 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:47:24.848 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17584 mm
17-03-17 19:47:24.848 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:47:24.848 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:47:24.848 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 19:47:24.848 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:47:24.848 -07 000000501 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 19:47:24.848 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:24.858 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:47:24.858 -07 000000551 INF: FPGA: Recv YRDPOS 137978
17-03-17 19:47:24.858 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:47:24.858 -07 000000501 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:24.858 -07 000000501 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:47:24.858 -07 000000501 INF: Y Motor: Moving 1345 steps-22
17-03-17 19:47:24.858 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38413, sync = True, waitForSettling = False)
17-03-17 19:47:24.858 -07 000000547 INF: Z Motor: Moving to -0.175843 mm, started at -0.169526 mm, distance = -6.32 um
17-03-17 19:47:24.868 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:47:24.878 -07 000000547 INF: FPGA: Xmit ZDACW 38413\n [Z Motor]
17-03-17 19:47:24.878 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:47:24.888 -07 000000547 INF: FPGA: 'ZDACW 38413' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:47:24.888 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:24.888 -07 000000569 INF: FPGA: Recv ZDACR 38413
17-03-17 19:47:24.898 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:24.898 -07 000000547 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 19:47:25.028 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:47:25.028 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:47:25.028 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:25.038 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:47:25.038 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:47:25.038 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:25.038 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:47:25.038 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:47:25.038 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:47:25.038 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:47:25.058 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:47:25.058 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 205 ms overall
17-03-17 19:47:25.248 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 19:47:25.248 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 378 ms to get response, and 396 ms overall
17-03-17 19:47:25.288 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:25.288 -07 000000561 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:47:25.298 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:47:25.298 -07 000000501 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:25.298 -07 000000501 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:47:25.298 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.841 mm, average velocity = 2.123 mm/sec
17-03-17 19:47:26.248 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:26.248 -07 000000478 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:47:26.258 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:26.258 -07 000000501 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:26.278 -07 000000501 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:47:26.278 -07 000000501 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:47:26.278 -07 000000501 INF: Y Motor: Moved to 68.2051 after 1423 ms (table move)
17-03-17 19:47:26.278 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175843 mm (DAC = 38413)
17-03-17 19:47:26.278 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:26.278 -07 000000551 INF: FPGA: Recv ZSGSRD 36666
17-03-17 19:47:26.288 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:47:26.288 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:26.288 -07 000000478 INF: FPGA: Recv ZSGSRD 36666
17-03-17 19:47:26.298 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:26.298 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:26.298 -07 000000482 INF: FPGA: Recv ZSGSRD 36662
17-03-17 19:47:26.308 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:26.308 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:26.308 -07 000000547 INF: FPGA: Recv ZSGSRD 36664
17-03-17 19:47:26.318 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:26.318 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:26.318 -07 000000431 INF: FPGA: Recv ZSGSRD 36662
17-03-17 19:47:26.328 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:26.328 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:26.328 -07 000000561 INF: FPGA: Recv ZSGSRD 36649
17-03-17 19:47:26.338 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:26.338 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:26.338 -07 000000593 INF: FPGA: Recv ZSGSRD 36663
17-03-17 19:47:26.348 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:26.348 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:26.348 -07 000000482 INF: FPGA: Recv ZSGSRD 36663
17-03-17 19:47:26.358 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:26.358 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:26.358 -07 000000547 INF: FPGA: Recv ZSGSRD 36667
17-03-17 19:47:26.368 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:26.368 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:26.368 -07 000000431 INF: FPGA: Recv ZSGSRD 36664
17-03-17 19:47:26.378 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:26.378 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:26.378 -07 000000561 INF: FPGA: Recv ZPIEZORD 32956
17-03-17 19:47:26.388 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:26.388 -07 000000541 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.861 V. Piezo Error = -8.2 V.
17-03-17 19:47:26.388 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36663 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36664 (-175.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36649 (-174.9 uncal um), Max = 36667 (-175.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-17 19:47:26.388 -07 000000541 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36663, posNoise = 4, negNoise = 14
17-03-17 19:47:26.388 -07 000000541 INF: Z Motor: After move to -0.175843, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:26.388 -07 000000541 INF: Z Motor: Settle wait time = 1418 ms, measure time = 105 ms (allowed 150 ms), total time = 1523 ms
17-03-17 19:47:26.388 -07 000000541 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:47:26.438 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 19:47:26.438 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:47:26.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:26.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:26.438 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:26.438 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:26.438 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:47:26.438 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:26.448 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:47:26.448 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:47:26.448 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:47:26.448 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:47:26.458 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 19:47:26.458 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 19:47:26.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:47:26.498 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:47:26.698 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:47:26.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:47:26.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:47:26.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159990544, 0x0, 559484976) start.
17-03-17 19:47:26.718 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:47:26.738 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:47:26.738 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 19:47:26.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 19:47:26.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1159990544, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:47:26.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:26.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:47:26.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:47:26.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:47:26.938 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:47:26.938 -07 000000478 INF: Autofocus start
17-03-17 19:47:26.938 -07 000000478 INF: MeasureProfile start
17-03-17 19:47:26.938 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:47:26.948 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:47:26.948 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:47:26.948 -07 000000478 INF: MeasureProfile done
17-03-17 19:47:26.948 -07 000000478 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 19:47:26.948 -07 000000478 INF: Autofocus finished
17-03-17 19:47:27.148 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:47:27.148 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:47:27.148 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175854241764517. ----------
17-03-17 19:47:27.148 -07 000000610 INF: Cycle	30	Tile	11	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:47:27.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36893, sync = True, waitForSettling = True)
17-03-17 19:47:27.158 -07 000000610 INF: Z Motor: Moving to -0.168885 mm, started at -0.175854 mm, distance = 6.97 um
17-03-17 19:47:27.158 -07 000000610 INF: FPGA: Xmit ZDACW 36893\n [Z Motor]
17-03-17 19:47:27.158 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:47:27.168 -07 000000610 INF: FPGA: 'ZDACW 36893' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:47:27.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:27.168 -07 000000486 INF: FPGA: Recv ZDACR 36893
17-03-17 19:47:27.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:27.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:47:27.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:27.328 -07 000000569 INF: FPGA: Recv ZSGSRD 35577
17-03-17 19:47:27.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:27.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:27.338 -07 000000431 INF: FPGA: Recv ZSGSRD 35577
17-03-17 19:47:27.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:27.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:27.348 -07 000000476 INF: FPGA: Recv ZSGSRD 35574
17-03-17 19:47:27.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:27.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:27.358 -07 000000618 INF: FPGA: Recv ZSGSRD 35577
17-03-17 19:47:27.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:27.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:27.368 -07 000000486 INF: FPGA: Recv ZSGSRD 35583
17-03-17 19:47:27.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:27.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:27.378 -07 000000569 INF: FPGA: Recv ZSGSRD 35577
17-03-17 19:47:27.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:27.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:27.388 -07 000000382 INF: FPGA: Recv ZSGSRD 35584
17-03-17 19:47:27.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:27.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:27.398 -07 000000561 INF: FPGA: Recv ZSGSRD 35581
17-03-17 19:47:27.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:27.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:27.408 -07 000000551 INF: FPGA: Recv ZSGSRD 35572
17-03-17 19:47:27.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:27.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:27.418 -07 000000431 INF: FPGA: Recv ZSGSRD 35583
17-03-17 19:47:27.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:27.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:27.428 -07 000000569 INF: FPGA: Recv ZPIEZORD 31519
17-03-17 19:47:27.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:27.438 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -9.0 V.
17-03-17 19:47:27.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35578 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35577 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35572 (-168.0 uncal um), Max = 35584 (-168.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:47:27.438 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35578, posNoise = 6, negNoise = 6
17-03-17 19:47:27.438 -07 000000610 INF: Z Motor: After move to -0.168885, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:27.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:47:27.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:27.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:27.438 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:27.438 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:47:27.438 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:47:27.438 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:47:27.438 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:27.438 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:27.438 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:47:27.438 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:47:27.438 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:47:27.438 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:47:27.448 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:47:27.448 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:47:27.448 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:47:27.448 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:47:27.458 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:47:27.458 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:47:27.458 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:47:27.458 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:47:27.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 37070 150\n [Camera]
17-03-17 19:47:27.658 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:47:28.068 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:47:28.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:47:28.068 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:28.068 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:28.068 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 19:47:28.068 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:47:28.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:47:28.068 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:28.078 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:28.078 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:47:28.258 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37070 790
17-03-17 19:47:28.408 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:47:28.448 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:47:28.448 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:47:28.448 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:28.448 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:47:28.448 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:47:28.448 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:47:28.448 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:47:28.448 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:28.448 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:47:28.458 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:47:28.608 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:47:28.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:47:28.608 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:28.728 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:47:28.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:47:28.728 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:28.728 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 19:47:28.728 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:28.738 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:28.738 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:47:28.798 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:47:28.798 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:47:28.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 37070 150' command took 2 ms to send, 1323 ms to get response, and 1335 ms overall
17-03-17 19:47:28.798 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.169495
17-03-17 19:47:28.798 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16949 mm
17-03-17 19:47:28.798 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:47:28.798 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:47:28.798 -07 000000431 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 19:47:28.798 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37026, sync = True, waitForSettling = False)
17-03-17 19:47:28.798 -07 000000551 INF: Z Motor: Moving to -0.169494 mm, started at -0.168884 mm, distance = -0.61 um
17-03-17 19:47:28.798 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:28.808 -07 000000551 INF: FPGA: Xmit ZDACW 37026\n [Z Motor]
17-03-17 19:47:28.808 -07 000000482 INF: FPGA: Recv YRDPOS 139684
17-03-17 19:47:28.808 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:47:28.808 -07 000000431 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:28.808 -07 000000431 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:47:28.808 -07 000000431 INF: Y Motor: Moving 1340 steps-15
17-03-17 19:47:28.808 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:47:28.818 -07 000000551 INF: FPGA: 'ZDACW 37026' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:47:28.818 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:47:28.828 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:28.828 -07 000000476 INF: FPGA: Recv ZDACR 37026
17-03-17 19:47:28.838 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:47:28.838 -07 000000551 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 19:47:29.118 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:47:29.118 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:47:29.118 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:29.118 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:47:29.118 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:47:29.118 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:29.118 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:29.118 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 19:47:29.118 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:29.128 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:47:29.188 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:47:29.188 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 386 ms overall
17-03-17 19:47:29.228 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:29.228 -07 000000626 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:47:29.238 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:47:29.238 -07 000000431 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:29.238 -07 000000431 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 19:47:29.238 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.164 mm/sec
17-03-17 19:47:29.538 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.023489,
17-03-17 19:47:30.188 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:30.188 -07 000000424 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:47:30.198 -07 000000431 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:30.198 -07 000000431 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:30.218 -07 000000431 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:47:30.218 -07 000000431 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:47:30.218 -07 000000431 INF: Y Motor: Moved to 69.0273 after 1412 ms (table move)
17-03-17 19:47:30.218 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169494 mm (DAC = 37026)
17-03-17 19:47:30.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.218 -07 000000424 INF: FPGA: Recv ZSGSRD 35677
17-03-17 19:47:30.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:47:30.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.228 -07 000000438 INF: FPGA: Recv ZSGSRD 35675
17-03-17 19:47:30.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.238 -07 000000476 INF: FPGA: Recv ZSGSRD 35676
17-03-17 19:47:30.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.248 -07 000000478 INF: FPGA: Recv ZSGSRD 35670
17-03-17 19:47:30.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.258 -07 000000551 INF: FPGA: Recv ZSGSRD 35677
17-03-17 19:47:30.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.268 -07 000000476 INF: FPGA: Recv ZSGSRD 35676
17-03-17 19:47:30.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.278 -07 000000478 INF: FPGA: Recv ZSGSRD 35669
17-03-17 19:47:30.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.288 -07 000000486 INF: FPGA: Recv ZSGSRD 35676
17-03-17 19:47:30.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.298 -07 000000429 INF: FPGA: Recv ZSGSRD 35671
17-03-17 19:47:30.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.308 -07 000000593 INF: FPGA: Recv ZSGSRD 35678
17-03-17 19:47:30.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:30.318 -07 000000547 INF: FPGA: Recv ZPIEZORD 31618
17-03-17 19:47:30.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.328 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -9.0 V.
17-03-17 19:47:30.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35674 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35676 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35669 (-168.6 uncal um), Max = 35678 (-168.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:47:30.328 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35674, posNoise = 4, negNoise = 5
17-03-17 19:47:30.328 -07 000000610 INF: Z Motor: After move to -0.169494, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:30.328 -07 000000610 INF: Z Motor: Settle wait time = 1414 ms, measure time = 107 ms (allowed 150 ms), total time = 1521 ms
17-03-17 19:47:30.328 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:47:30.378 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 19:47:30.378 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:47:30.378 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.169500695956315. ----------
17-03-17 19:47:30.378 -07 000000610 INF: Cycle	30	Tile	12	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:47:30.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36849, sync = True, waitForSettling = True)
17-03-17 19:47:30.378 -07 000000610 INF: Z Motor: Moving to -0.168684 mm, started at -0.169501 mm, distance = 0.82 um
17-03-17 19:47:30.378 -07 000000610 INF: FPGA: Xmit ZDACW 36849\n [Z Motor]
17-03-17 19:47:30.378 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:47:30.388 -07 000000610 INF: FPGA: 'ZDACW 36849' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:47:30.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:30.388 -07 000000547 INF: FPGA: Recv ZDACR 36849
17-03-17 19:47:30.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:47:30.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.548 -07 000000541 INF: FPGA: Recv ZSGSRD 35556
17-03-17 19:47:30.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:30.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.558 -07 000000486 INF: FPGA: Recv ZSGSRD 35552
17-03-17 19:47:30.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.568 -07 000000382 INF: FPGA: Recv ZSGSRD 35546
17-03-17 19:47:30.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.578 -07 000000551 INF: FPGA: Recv ZSGSRD 35553
17-03-17 19:47:30.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.588 -07 000000626 INF: FPGA: Recv ZSGSRD 35548
17-03-17 19:47:30.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.598 -07 000000478 INF: FPGA: Recv ZSGSRD 35552
17-03-17 19:47:30.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.608 -07 000000438 INF: FPGA: Recv ZSGSRD 35547
17-03-17 19:47:30.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.618 -07 000000561 INF: FPGA: Recv ZSGSRD 35550
17-03-17 19:47:30.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.628 -07 000000569 INF: FPGA: Recv ZSGSRD 35550
17-03-17 19:47:30.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:30.638 -07 000000541 INF: FPGA: Recv ZSGSRD 35548
17-03-17 19:47:30.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:30.648 -07 000000462 INF: FPGA: Recv ZPIEZORD 31496
17-03-17 19:47:30.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:30.658 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.623 V. Piezo Error = -8.9 V.
17-03-17 19:47:30.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35550 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35550 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35546 (-167.8 uncal um), Max = 35556 (-167.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:47:30.658 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35550, posNoise = 6, negNoise = 4
17-03-17 19:47:30.658 -07 000000610 INF: Z Motor: After move to -0.168684, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:30.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:47:30.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:30.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:30.658 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:30.658 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:30.658 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:47:30.658 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:47:30.658 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:30.658 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:47:30.658 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:47:30.658 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:47:30.658 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:47:30.658 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:47:30.668 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:47:30.668 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:47:30.668 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:47:30.668 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:47:30.668 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:47:30.668 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:47:30.678 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 19:47:30.678 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 19:47:30.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 37026 150\n [Camera]
17-03-17 19:47:30.878 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:47:31.288 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:47:31.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:47:31.288 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:31.288 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:47:31.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:47:31.288 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:31.288 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:31.288 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) start.
17-03-17 19:47:31.298 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:31.298 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:47:31.478 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37026 790
17-03-17 19:47:31.628 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:47:31.668 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 19:47:31.668 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 19:47:31.668 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:31.668 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:31.668 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:47:31.668 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:47:31.668 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:47:31.668 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:31.678 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:31.678 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:47:31.718 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:47:31.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:47:31.828 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:47:31.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:47:31.828 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:31.968 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:47:31.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:47:31.968 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:31.968 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:31.968 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 19:47:31.978 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:31.978 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:47:32.018 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:47:32.018 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:47:32.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 37026 150' command took 2 ms to send, 1322 ms to get response, and 1334 ms overall
17-03-17 19:47:32.018 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.169039
17-03-17 19:47:32.018 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16904 mm
17-03-17 19:47:32.018 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:47:32.018 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:47:32.018 -07 000000593 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 19:47:32.018 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:32.018 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 36926, sync = True, waitForSettling = False)
17-03-17 19:47:32.018 -07 000000429 INF: Z Motor: Moving to -0.169036 mm, started at -0.168704 mm, distance = -0.33 um
17-03-17 19:47:32.028 -07 000000478 INF: FPGA: Recv YRDPOS 141368
17-03-17 19:47:32.028 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:47:32.028 -07 000000593 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:32.028 -07 000000593 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:47:32.028 -07 000000593 INF: Y Motor: Moving 1352 steps-31
17-03-17 19:47:32.028 -07 000000429 INF: FPGA: Xmit ZDACW 36926\n [Z Motor]
17-03-17 19:47:32.028 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:47:32.038 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:47:32.038 -07 000000429 INF: FPGA: 'ZDACW 36926' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:47:32.048 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:32.048 -07 000000382 INF: FPGA: Recv ZDACR 36926
17-03-17 19:47:32.058 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:47:32.058 -07 000000429 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 19:47:32.348 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:47:32.348 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:47:32.348 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:32.348 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:47:32.348 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:47:32.348 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:32.358 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:32.358 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:32.358 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 532 ms.
17-03-17 19:47:32.358 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:47:32.408 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 19:47:32.408 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:47:32.448 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:32.448 -07 000000429 INF: FPGA: Recv YRDPOS 143080
17-03-17 19:47:32.458 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:47:32.458 -07 000000593 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:32.458 -07 000000593 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:47:32.458 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.179 mm/sec
17-03-17 19:47:33.408 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:33.408 -07 000000429 INF: FPGA: Recv YRDPOS 143080
17-03-17 19:47:33.418 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:33.418 -07 000000593 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:33.438 -07 000000593 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:47:33.438 -07 000000593 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:47:33.438 -07 000000593 INF: Y Motor: Moved to 69.8633 after 1415 ms (table move)
17-03-17 19:47:33.438 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169036 mm (DAC = 36926)
17-03-17 19:47:33.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.438 -07 000000551 INF: FPGA: Recv ZSGSRD 35602
17-03-17 19:47:33.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:47:33.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.448 -07 000000626 INF: FPGA: Recv ZSGSRD 35592
17-03-17 19:47:33.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.458 -07 000000569 INF: FPGA: Recv ZSGSRD 35611
17-03-17 19:47:33.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.468 -07 000000547 INF: FPGA: Recv ZSGSRD 35605
17-03-17 19:47:33.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.478 -07 000000478 INF: FPGA: Recv ZSGSRD 35602
17-03-17 19:47:33.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.488 -07 000000438 INF: FPGA: Recv ZSGSRD 35602
17-03-17 19:47:33.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.498 -07 000000424 INF: FPGA: Recv ZSGSRD 35602
17-03-17 19:47:33.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.508 -07 000000551 INF: FPGA: Recv ZSGSRD 35598
17-03-17 19:47:33.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.518 -07 000000547 INF: FPGA: Recv ZSGSRD 35598
17-03-17 19:47:33.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.528 -07 000000478 INF: FPGA: Recv ZSGSRD 35605
17-03-17 19:47:33.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:33.538 -07 000000482 INF: FPGA: Recv ZPIEZORD 31550
17-03-17 19:47:33.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.548 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.635 V. Piezo Error = -8.9 V.
17-03-17 19:47:33.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35602 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35602 (-168.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35592 (-168.1 uncal um), Max = 35611 (-168.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:47:33.548 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35602, posNoise = 9, negNoise = 10
17-03-17 19:47:33.548 -07 000000610 INF: Z Motor: After move to -0.169036, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:33.548 -07 000000610 INF: Z Motor: Settle wait time = 1417 ms, measure time = 106 ms (allowed 150 ms), total time = 1523 ms
17-03-17 19:47:33.548 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:47:33.598 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 19:47:33.598 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:47:33.598 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.169038152682109. ----------
17-03-17 19:47:33.598 -07 000000610 INF: Cycle	30	Tile	13	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:47:33.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36750, sync = True, waitForSettling = True)
17-03-17 19:47:33.598 -07 000000610 INF: Z Motor: Moving to -0.168231 mm, started at -0.169038 mm, distance = 0.81 um
17-03-17 19:47:33.598 -07 000000610 INF: FPGA: Xmit ZDACW 36750\n [Z Motor]
17-03-17 19:47:33.598 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:47:33.608 -07 000000610 INF: FPGA: 'ZDACW 36750' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:47:33.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:33.608 -07 000000431 INF: FPGA: Recv ZDACR 36750
17-03-17 19:47:33.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:47:33.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.768 -07 000000486 INF: FPGA: Recv ZSGSRD 35480
17-03-17 19:47:33.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:33.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.778 -07 000000429 INF: FPGA: Recv ZSGSRD 35484
17-03-17 19:47:33.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.788 -07 000000382 INF: FPGA: Recv ZSGSRD 35479
17-03-17 19:47:33.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.798 -07 000000547 INF: FPGA: Recv ZSGSRD 35479
17-03-17 19:47:33.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.808 -07 000000618 INF: FPGA: Recv ZSGSRD 35482
17-03-17 19:47:33.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.818 -07 000000501 INF: FPGA: Recv ZSGSRD 35474
17-03-17 19:47:33.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.828 -07 000000482 INF: FPGA: Recv ZSGSRD 35479
17-03-17 19:47:33.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.838 -07 000000541 INF: FPGA: Recv ZSGSRD 35474
17-03-17 19:47:33.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.848 -07 000000438 INF: FPGA: Recv ZSGSRD 35474
17-03-17 19:47:33.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:33.858 -07 000000561 INF: FPGA: Recv ZSGSRD 35480
17-03-17 19:47:33.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:33.868 -07 000000424 INF: FPGA: Recv ZPIEZORD 31396
17-03-17 19:47:33.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:33.878 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.608 V. Piezo Error = -9.0 V.
17-03-17 19:47:33.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35478 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35479 (-167.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35474 (-167.3 uncal um), Max = 35484 (-167.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:47:33.878 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35478, posNoise = 6, negNoise = 4
17-03-17 19:47:33.878 -07 000000610 INF: Z Motor: After move to -0.168231, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:33.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:47:33.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:33.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:33.878 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:33.878 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:33.878 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:47:33.878 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:47:33.878 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:47:33.878 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:33.878 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:47:33.878 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:47:33.878 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:47:33.878 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:47:33.888 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:47:33.888 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:47:33.888 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:47:33.888 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:47:33.898 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:47:33.898 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:47:33.898 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:47:33.898 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:47:33.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 36926 150\n [Camera]
17-03-17 19:47:34.098 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:47:34.508 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:47:34.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:47:34.508 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:34.508 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:34.508 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) start.
17-03-17 19:47:34.508 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:47:34.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:47:34.508 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:34.508 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:34.508 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1143115480, 0x0, 418435064) start.
17-03-17 19:47:34.698 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36926 790
17-03-17 19:47:34.848 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:47:34.888 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:47:34.888 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:47:34.888 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:34.898 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1143115480, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:47:34.898 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:47:34.898 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:34.898 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.994908,
17-03-17 19:47:34.898 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:47:34.898 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:47:34.908 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:47:34.908 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:47:35.048 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:47:35.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:47:35.048 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:35.048 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:35.048 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:47:35.048 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:47:35.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:47:35.048 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:35.048 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:35.048 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:47:35.238 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:47:35.238 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:47:35.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 36926 150' command took 2 ms to send, 1324 ms to get response, and 1334 ms overall
17-03-17 19:47:35.238 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.168664
17-03-17 19:47:35.238 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16866 mm
17-03-17 19:47:35.238 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:47:35.248 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:47:35.248 -07 000000593 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 19:47:35.248 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:35.248 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 36845, sync = True, waitForSettling = False)
17-03-17 19:47:35.248 -07 000000429 INF: Z Motor: Moving to -0.168666 mm, started at -0.168242 mm, distance = -0.42 um
17-03-17 19:47:35.248 -07 000000618 INF: FPGA: Recv YRDPOS 143080
17-03-17 19:47:35.258 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:47:35.258 -07 000000429 INF: FPGA: Xmit ZDACW 36845\n [Z Motor]
17-03-17 19:47:35.258 -07 000000593 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:35.258 -07 000000593 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:47:35.258 -07 000000593 INF: Y Motor: Moving 1343 steps-19
17-03-17 19:47:35.258 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:47:35.268 -07 000000429 INF: FPGA: 'ZDACW 36845' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:47:35.268 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:35.268 -07 000000382 INF: FPGA: Recv ZDACR 36845
17-03-17 19:47:35.278 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:47:35.278 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:35.278 -07 000000429 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 19:47:35.428 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:47:35.428 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:47:35.428 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:35.428 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:47:35.428 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:47:35.428 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:35.438 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:35.438 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:47:35.438 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:35.438 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:47:35.648 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 19:47:35.648 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:47:35.688 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:35.688 -07 000000569 INF: FPGA: Recv YRDPOS 144770
17-03-17 19:47:35.698 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:47:35.698 -07 000000593 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:35.698 -07 000000593 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:47:35.698 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 19:47:36.648 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:36.648 -07 000000438 INF: FPGA: Recv YRDPOS 144770
17-03-17 19:47:36.658 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:36.658 -07 000000593 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:36.678 -07 000000593 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:47:36.678 -07 000000593 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:47:36.678 -07 000000593 INF: Y Motor: Moved to 70.6885 after 1428 ms (table move)
17-03-17 19:47:36.678 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168666 mm (DAC = 36845)
17-03-17 19:47:36.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:36.678 -07 000000541 INF: FPGA: Recv ZSGSRD 35544
17-03-17 19:47:36.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:47:36.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:36.688 -07 000000431 INF: FPGA: Recv ZSGSRD 35536
17-03-17 19:47:36.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:36.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:36.698 -07 000000501 INF: FPGA: Recv ZSGSRD 35542
17-03-17 19:47:36.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:36.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:36.708 -07 000000626 INF: FPGA: Recv ZSGSRD 35538
17-03-17 19:47:36.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:36.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:36.718 -07 000000551 INF: FPGA: Recv ZSGSRD 35550
17-03-17 19:47:36.718 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:47:36.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:47:36.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:36.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:36.728 -07 000000482 INF: FPGA: Recv ZSGSRD 35556
17-03-17 19:47:36.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:36.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:36.738 -07 000000551 INF: FPGA: Recv ZSGSRD 35544
17-03-17 19:47:36.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:36.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:36.748 -07 000000478 INF: FPGA: Recv ZSGSRD 35536
17-03-17 19:47:36.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:36.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:36.758 -07 000000486 INF: FPGA: Recv ZSGSRD 35542
17-03-17 19:47:36.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:36.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:36.768 -07 000000569 INF: FPGA: Recv ZSGSRD 35542
17-03-17 19:47:36.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:36.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:36.778 -07 000000618 INF: FPGA: Recv ZPIEZORD 31515
17-03-17 19:47:36.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:36.788 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -8.9 V.
17-03-17 19:47:36.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35543 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35542 (-167.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 35536 (-167.7 uncal um), Max = 35556 (-167.9 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:47:36.788 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35543, posNoise = 13, negNoise = 7
17-03-17 19:47:36.788 -07 000000610 INF: Z Motor: After move to -0.168666, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:36.788 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 106 ms (allowed 150 ms), total time = 1537 ms
17-03-17 19:47:36.788 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:47:36.838 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 19:47:36.838 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:47:36.838 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.168659124165745. ----------
17-03-17 19:47:36.838 -07 000000610 INF: Cycle	30	Tile	14	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:47:36.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36668, sync = True, waitForSettling = True)
17-03-17 19:47:36.838 -07 000000610 INF: Z Motor: Moving to -0.167855 mm, started at -0.168659 mm, distance = 0.80 um
17-03-17 19:47:36.838 -07 000000610 INF: FPGA: Xmit ZDACW 36668\n [Z Motor]
17-03-17 19:47:36.838 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:47:36.848 -07 000000610 INF: FPGA: 'ZDACW 36668' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:47:36.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:36.848 -07 000000626 INF: FPGA: Recv ZDACR 36668
17-03-17 19:47:36.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:36.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:47:37.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:37.008 -07 000000462 INF: FPGA: Recv ZSGSRD 35420
17-03-17 19:47:37.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:37.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:37.018 -07 000000438 INF: FPGA: Recv ZSGSRD 35427
17-03-17 19:47:37.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:37.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:37.028 -07 000000482 INF: FPGA: Recv ZSGSRD 35423
17-03-17 19:47:37.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:37.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:37.038 -07 000000486 INF: FPGA: Recv ZSGSRD 35423
17-03-17 19:47:37.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:37.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:37.048 -07 000000431 INF: FPGA: Recv ZSGSRD 35417
17-03-17 19:47:37.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:37.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:37.058 -07 000000541 INF: FPGA: Recv ZSGSRD 35425
17-03-17 19:47:37.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:37.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:37.068 -07 000000438 INF: FPGA: Recv ZSGSRD 35420
17-03-17 19:47:37.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:37.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:37.078 -07 000000382 INF: FPGA: Recv ZSGSRD 35412
17-03-17 19:47:37.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:37.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:37.088 -07 000000501 INF: FPGA: Recv ZSGSRD 35421
17-03-17 19:47:37.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:37.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:37.098 -07 000000431 INF: FPGA: Recv ZSGSRD 35418
17-03-17 19:47:37.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:37.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:37.108 -07 000000478 INF: FPGA: Recv ZPIEZORD 31350
17-03-17 19:47:37.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:37.118 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.595 V. Piezo Error = -9.0 V.
17-03-17 19:47:37.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35421 (-167.0 uncal um), Error = 0.8 uncal um, Median = 35420 (-167.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35412 (-166.9 uncal um), Max = 35427 (-167.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:47:37.118 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35421, posNoise = 6, negNoise = 9
17-03-17 19:47:37.118 -07 000000610 INF: Z Motor: After move to -0.167855, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:37.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:47:37.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:37.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:37.118 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:37.118 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:47:37.118 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:37.118 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:47:37.118 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:47:37.118 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:37.118 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:47:37.118 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:47:37.118 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:47:37.118 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:47:37.128 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:47:37.128 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:47:37.128 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:47:37.128 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:47:37.138 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:47:37.138 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:47:37.138 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:47:37.138 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 19:47:37.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 36845 150\n [Camera]
17-03-17 19:47:37.348 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:47:37.748 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 19:47:37.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 19:47:37.748 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:37.748 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:37.748 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:47:37.758 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 19:47:37.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 19:47:37.758 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:37.868 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:37.868 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:47:37.938 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36845 790
17-03-17 19:47:38.088 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:47:38.138 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:47:38.138 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:47:38.138 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:38.138 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:47:38.138 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:47:38.238 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 19:47:38.238 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 19:47:38.238 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:38.248 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:47:38.248 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 496 ms.
17-03-17 19:47:38.288 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:47:38.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:47:38.288 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:38.288 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:47:38.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:47:38.288 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:38.298 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:38.298 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:47:38.298 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:38.298 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:47:38.478 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:47:38.478 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:47:38.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 36845 150' command took 2 ms to send, 1325 ms to get response, and 1335 ms overall
17-03-17 19:47:38.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:47:38.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.16787537028445. ------
17-03-17 19:47:38.488 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17453 mm
17-03-17 19:47:38.488 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:47:38.488 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:47:38.488 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38125, sync = True, waitForSettling = False)
17-03-17 19:47:38.488 -07 000000438 INF: Z Motor: Moving to -0.174525 mm, started at -0.167875 mm, distance = -6.65 um
17-03-17 19:47:38.488 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:47:38.488 -07 000000478 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 19:47:38.488 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:47:38.498 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:38.498 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:47:38.498 -07 000000593 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:47:38.508 -07 000000438 INF: FPGA: Xmit ZDACW 38125\n [Z Motor]
17-03-17 19:47:38.508 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:47:38.508 -07 000000478 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:38.508 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:47:38.508 -07 000000478 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:47:38.508 -07 000000478 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:47:38.518 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:47:38.518 -07 000000438 INF: FPGA: 'ZDACW 38125' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 19:47:38.528 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:47:38.538 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:38.538 -07 000000482 INF: FPGA: Recv ZDACR 38125
17-03-17 19:47:38.548 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:47:38.548 -07 000000438 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 19:47:38.678 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:47:38.678 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:47:38.678 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:38.678 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:47:38.678 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:47:38.678 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:38.678 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:47:38.678 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:47:38.678 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:38.688 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:47:38.718 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:47:38.718 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:47:38.898 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:47:38.898 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 19:47:38.938 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:38.938 -07 000000593 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:47:38.948 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:47:38.948 -07 000000478 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:38.948 -07 000000478 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:47:38.948 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.153 mm/sec
17-03-17 19:47:39.898 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:39.898 -07 000000593 INF: FPGA: Recv YRDPOS 146471
17-03-17 19:47:39.908 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:39.908 -07 000000478 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:39.928 -07 000000478 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:47:39.928 -07 000000478 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:47:39.928 -07 000000478 INF: Y Motor: Moved to 71.5190 after 1436 ms (table move)
17-03-17 19:47:39.928 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174525 mm (DAC = 38125)
17-03-17 19:47:39.928 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:39.938 -07 000000424 INF: FPGA: Recv ZSGSRD 36465
17-03-17 19:47:39.938 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:47:39.948 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:39.948 -07 000000626 INF: FPGA: Recv ZSGSRD 36453
17-03-17 19:47:39.958 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:47:39.958 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:39.958 -07 000000482 INF: FPGA: Recv ZSGSRD 36457
17-03-17 19:47:39.968 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:39.968 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:39.968 -07 000000478 INF: FPGA: Recv ZSGSRD 36461
17-03-17 19:47:39.978 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:39.978 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:39.978 -07 000000476 INF: FPGA: Recv ZSGSRD 36459
17-03-17 19:47:39.988 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:39.988 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:39.988 -07 000000547 INF: FPGA: Recv ZSGSRD 36456
17-03-17 19:47:39.998 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:39.998 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:39.998 -07 000000486 INF: FPGA: Recv ZSGSRD 36454
17-03-17 19:47:40.008 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:40.008 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:40.008 -07 000000551 INF: FPGA: Recv ZSGSRD 36453
17-03-17 19:47:40.018 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:40.018 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:40.018 -07 000000501 INF: FPGA: Recv ZSGSRD 36456
17-03-17 19:47:40.028 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:40.028 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:40.028 -07 000000478 INF: FPGA: Recv ZSGSRD 36450
17-03-17 19:47:40.038 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:40.038 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:40.038 -07 000000593 INF: FPGA: Recv ZPIEZORD 32739
17-03-17 19:47:40.048 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:40.048 -07 000000429 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.818 V. Piezo Error = -8.2 V.
17-03-17 19:47:40.048 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36456 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36456 (-173.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36450 (-173.6 uncal um), Max = 36465 (-173.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:47:40.048 -07 000000429 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36456, posNoise = 9, negNoise = 6
17-03-17 19:47:40.048 -07 000000429 INF: Z Motor: After move to -0.174525, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:40.048 -07 000000429 INF: Z Motor: Settle wait time = 1440 ms, measure time = 113 ms (allowed 150 ms), total time = 1553 ms
17-03-17 19:47:40.048 -07 000000429 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-17 19:47:40.088 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 19:47:40.088 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:47:40.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:40.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:40.088 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:40.088 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:40.088 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:47:40.088 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:40.088 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:47:40.088 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:47:40.098 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:47:40.098 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:47:40.108 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:47:40.108 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:47:40.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:47:40.148 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:47:40.258 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.014009,
17-03-17 19:47:40.348 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:47:40.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:47:40.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:47:40.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 19:47:40.388 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:47:40.388 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 19:47:40.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 19:47:40.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:47:40.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:40.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:47:40.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:47:40.588 -07 000000561 INF: Autofocus start
17-03-17 19:47:40.588 -07 000000561 INF: MeasureProfile start
17-03-17 19:47:40.588 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:47:40.588 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:47:40.598 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:47:40.598 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:47:40.598 -07 000000561 INF: MeasureProfile done
17-03-17 19:47:40.598 -07 000000561 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:47:40.598 -07 000000561 INF: Autofocus finished
17-03-17 19:47:40.798 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:47:40.798 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 19:47:40.798 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174524429851172. ----------
17-03-17 19:47:40.808 -07 000000610 INF: Cycle	30	Tile	15	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:47:40.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36658, sync = True, waitForSettling = True)
17-03-17 19:47:40.808 -07 000000610 INF: Z Motor: Moving to -0.167810 mm, started at -0.174524 mm, distance = 6.71 um
17-03-17 19:47:40.828 -07 000000610 INF: FPGA: Xmit ZDACW 36658\n [Z Motor]
17-03-17 19:47:40.828 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:47:40.838 -07 000000610 INF: FPGA: 'ZDACW 36658' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:47:40.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:40.838 -07 000000424 INF: FPGA: Recv ZDACR 36658
17-03-17 19:47:40.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:40.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:47:40.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:40.998 -07 000000593 INF: FPGA: Recv ZSGSRD 35413
17-03-17 19:47:41.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:41.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:41.008 -07 000000429 INF: FPGA: Recv ZSGSRD 35418
17-03-17 19:47:41.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:41.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:41.018 -07 000000551 INF: FPGA: Recv ZSGSRD 35408
17-03-17 19:47:41.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:41.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:41.028 -07 000000561 INF: FPGA: Recv ZSGSRD 35409
17-03-17 19:47:41.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:41.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:41.038 -07 000000541 INF: FPGA: Recv ZSGSRD 35411
17-03-17 19:47:41.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:41.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:41.048 -07 000000501 INF: FPGA: Recv ZSGSRD 35423
17-03-17 19:47:41.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:41.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:41.058 -07 000000478 INF: FPGA: Recv ZSGSRD 35409
17-03-17 19:47:41.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:41.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:41.068 -07 000000431 INF: FPGA: Recv ZSGSRD 35410
17-03-17 19:47:41.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:41.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:41.078 -07 000000626 INF: FPGA: Recv ZSGSRD 35415
17-03-17 19:47:41.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:41.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:41.088 -07 000000424 INF: FPGA: Recv ZSGSRD 35413
17-03-17 19:47:41.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:41.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:41.098 -07 000000438 INF: FPGA: Recv ZPIEZORD 31334
17-03-17 19:47:41.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:41.108 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.594 V. Piezo Error = -9.0 V.
17-03-17 19:47:41.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35413 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35412 (-166.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35408 (-166.9 uncal um), Max = 35423 (-167.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:47:41.108 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35413, posNoise = 10, negNoise = 5
17-03-17 19:47:41.108 -07 000000610 INF: Z Motor: After move to -0.167810, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:41.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 295 ms)
17-03-17 19:47:41.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:41.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:41.108 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:41.108 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:41.108 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:47:41.108 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:47:41.108 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:47:41.108 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:41.108 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:47:41.108 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:47:41.108 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:47:41.108 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:47:41.118 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:47:41.118 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:47:41.118 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:47:41.118 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:47:41.128 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:47:41.128 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:47:41.128 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:47:41.128 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:47:41.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 36835 150\n [Camera]
17-03-17 19:47:41.328 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:47:41.718 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:47:41.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:47:41.728 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:47:41.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:47:41.738 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:41.738 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:41.738 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:47:41.738 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:47:41.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:47:41.738 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:41.738 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:41.738 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:47:41.928 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36835 790
17-03-17 19:47:42.078 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:47:42.108 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:47:42.108 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:47:42.108 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:42.118 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:47:42.118 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:47:42.118 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:47:42.118 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:42.118 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:47:42.118 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:47:42.118 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:47:42.268 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:47:42.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:47:42.268 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:42.388 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:47:42.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:47:42.388 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:42.388 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:42.388 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) start.
17-03-17 19:47:42.398 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:42.398 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:47:42.458 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:47:42.458 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:47:42.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 36835 150' command took 2 ms to send, 1329 ms to get response, and 1334 ms overall
17-03-17 19:47:42.468 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167731
17-03-17 19:47:42.468 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16773 mm
17-03-17 19:47:42.468 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:47:42.468 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:47:42.468 -07 000000382 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 19:47:42.468 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:42.468 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 36641, sync = True, waitForSettling = False)
17-03-17 19:47:42.468 -07 000000561 INF: Z Motor: Moving to -0.167732 mm, started at -0.167824 mm, distance = 0.09 um
17-03-17 19:47:42.468 -07 000000462 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:47:42.478 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:47:42.478 -07 000000382 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:42.478 -07 000000561 INF: FPGA: Xmit ZDACW 36641\n [Z Motor]
17-03-17 19:47:42.478 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:47:42.478 -07 000000382 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:47:42.478 -07 000000382 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:47:42.488 -07 000000561 INF: FPGA: 'ZDACW 36641' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:47:42.488 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:47:42.498 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:42.498 -07 000000541 INF: FPGA: Recv ZDACR 36641
17-03-17 19:47:42.508 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:47:42.508 -07 000000561 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 19:47:42.778 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 19:47:42.778 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:47:42.778 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:42.788 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1143115480, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:47:42.788 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:47:42.788 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:42.788 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:47:42.788 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:42.788 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-17 19:47:42.798 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:47:42.858 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 19:47:42.858 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 19:47:42.898 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:42.898 -07 000000462 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:47:42.908 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:47:42.908 -07 000000382 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:42.908 -07 000000382 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:47:42.908 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.197 mm/sec
17-03-17 19:47:43.858 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:43.858 -07 000000593 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:47:43.868 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:43.868 -07 000000382 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:43.888 -07 000000382 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:47:43.888 -07 000000382 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:47:43.888 -07 000000382 INF: Y Motor: Moved to 72.3496 after 1418 ms (table move)
17-03-17 19:47:43.888 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167732 mm (DAC = 36641)
17-03-17 19:47:43.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:43.888 -07 000000551 INF: FPGA: Recv ZSGSRD 35400
17-03-17 19:47:43.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:47:43.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:43.898 -07 000000593 INF: FPGA: Recv ZSGSRD 35394
17-03-17 19:47:43.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:43.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:43.908 -07 000000547 INF: FPGA: Recv ZSGSRD 35398
17-03-17 19:47:43.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:43.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:43.918 -07 000000569 INF: FPGA: Recv ZSGSRD 35401
17-03-17 19:47:43.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:43.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:43.928 -07 000000429 INF: FPGA: Recv ZSGSRD 35399
17-03-17 19:47:43.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:43.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:43.938 -07 000000382 INF: FPGA: Recv ZSGSRD 35401
17-03-17 19:47:43.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:43.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:43.948 -07 000000424 INF: FPGA: Recv ZSGSRD 35399
17-03-17 19:47:43.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:43.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:43.958 -07 000000626 INF: FPGA: Recv ZSGSRD 35401
17-03-17 19:47:43.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:43.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:43.968 -07 000000478 INF: FPGA: Recv ZSGSRD 35400
17-03-17 19:47:43.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:43.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:43.978 -07 000000486 INF: FPGA: Recv ZSGSRD 35399
17-03-17 19:47:43.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:43.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:43.988 -07 000000438 INF: FPGA: Recv ZPIEZORD 31366
17-03-17 19:47:43.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:43.998 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.591 V. Piezo Error = -8.9 V.
17-03-17 19:47:43.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35399 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35400 (-166.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35394 (-166.8 uncal um), Max = 35401 (-166.9 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:47:43.998 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35399, posNoise = 2, negNoise = 5
17-03-17 19:47:43.998 -07 000000610 INF: Z Motor: After move to -0.167732, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:43.998 -07 000000610 INF: Z Motor: Settle wait time = 1420 ms, measure time = 107 ms (allowed 150 ms), total time = 1527 ms
17-03-17 19:47:43.998 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:47:44.048 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1578 ms
17-03-17 19:47:44.048 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:47:44.048 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.167734037617331. ----------
17-03-17 19:47:44.048 -07 000000610 INF: Cycle	30	Tile	16	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:47:44.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36464, sync = True, waitForSettling = True)
17-03-17 19:47:44.048 -07 000000610 INF: Z Motor: Moving to -0.166921 mm, started at -0.167734 mm, distance = 0.81 um
17-03-17 19:47:44.048 -07 000000610 INF: FPGA: Xmit ZDACW 36464\n [Z Motor]
17-03-17 19:47:44.048 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:47:44.058 -07 000000610 INF: FPGA: 'ZDACW 36464' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:47:44.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:44.058 -07 000000626 INF: FPGA: Recv ZDACR 36464
17-03-17 19:47:44.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:44.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:47:44.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:44.218 -07 000000551 INF: FPGA: Recv ZSGSRD 35276
17-03-17 19:47:44.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:44.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:44.228 -07 000000593 INF: FPGA: Recv ZSGSRD 35270
17-03-17 19:47:44.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:44.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:44.238 -07 000000462 INF: FPGA: Recv ZSGSRD 35277
17-03-17 19:47:44.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:44.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:44.248 -07 000000541 INF: FPGA: Recv ZSGSRD 35277
17-03-17 19:47:44.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:44.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:44.258 -07 000000486 INF: FPGA: Recv ZSGSRD 35276
17-03-17 19:47:44.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:44.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:44.268 -07 000000476 INF: FPGA: Recv ZSGSRD 35274
17-03-17 19:47:44.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:44.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:44.278 -07 000000478 INF: FPGA: Recv ZSGSRD 35272
17-03-17 19:47:44.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:44.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:44.288 -07 000000431 INF: FPGA: Recv ZSGSRD 35277
17-03-17 19:47:44.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:44.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:44.298 -07 000000551 INF: FPGA: Recv ZSGSRD 35272
17-03-17 19:47:44.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:44.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:44.308 -07 000000482 INF: FPGA: Recv ZSGSRD 35274
17-03-17 19:47:44.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:44.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:44.318 -07 000000429 INF: FPGA: Recv ZPIEZORD 31175
17-03-17 19:47:44.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:44.328 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.564 V. Piezo Error = -9.0 V.
17-03-17 19:47:44.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35274 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35275 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35270 (-166.0 uncal um), Max = 35277 (-166.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:47:44.328 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35274, posNoise = 3, negNoise = 4
17-03-17 19:47:44.328 -07 000000610 INF: Z Motor: After move to -0.166921, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:44.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:47:44.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:44.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:44.328 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:44.328 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:47:44.328 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:44.328 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:47:44.328 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:47:44.328 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:44.328 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:47:44.328 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:47:44.328 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:47:44.328 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:47:44.338 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:47:44.338 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:47:44.338 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:47:44.338 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:47:44.338 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:47:44.338 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:47:44.348 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:47:44.348 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:47:44.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 36641 150\n [Camera]
17-03-17 19:47:44.548 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:47:44.958 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 19:47:44.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 19:47:44.958 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 19:47:44.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 19:47:44.958 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:44.958 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:44.958 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:44.958 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 19:47:44.968 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:44.968 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) start.
17-03-17 19:47:45.148 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36641 790
17-03-17 19:47:45.298 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:47:45.348 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:47:45.348 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:47:45.348 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:45.348 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:47:45.348 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:47:45.348 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:47:45.348 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:45.358 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:47:45.358 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:47:45.358 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:47:45.488 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:47:45.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:47:45.488 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:45.488 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:45.488 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:47:45.488 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:47:45.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:47:45.498 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:45.498 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:45.498 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:47:45.618 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.989471,
17-03-17 19:47:45.678 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:47:45.678 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:47:45.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 36641 150' command took 2 ms to send, 1328 ms to get response, and 1336 ms overall
17-03-17 19:47:45.688 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167520
17-03-17 19:47:45.688 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16752 mm
17-03-17 19:47:45.688 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:47:45.808 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:47:45.808 -07 000000569 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 19:47:45.808 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 36595, sync = True, waitForSettling = False)
17-03-17 19:47:45.808 -07 000000438 INF: Z Motor: Moving to -0.167521 mm, started at -0.166931 mm, distance = -0.59 um
17-03-17 19:47:45.808 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:45.808 -07 000000626 INF: FPGA: Recv YRDPOS 148172
17-03-17 19:47:45.818 -07 000000569 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:47:45.818 -07 000000569 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:45.818 -07 000000569 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:47:45.818 -07 000000569 INF: Y Motor: Moving 1349 steps-27
17-03-17 19:47:45.818 -07 000000438 INF: FPGA: Xmit ZDACW 36595\n [Z Motor]
17-03-17 19:47:45.818 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:47:45.828 -07 000000438 INF: FPGA: 'ZDACW 36595' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:47:45.828 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:47:45.838 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:45.838 -07 000000478 INF: FPGA: Recv ZDACR 36595
17-03-17 19:47:45.848 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:47:45.848 -07 000000438 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:47:45.878 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:47:45.878 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:47:45.878 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:45.878 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 19:47:45.878 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:47:45.878 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:45.888 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:45.888 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:45.888 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:47:45.898 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:47:46.198 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 19:47:46.198 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:47:46.238 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:46.238 -07 000000547 INF: FPGA: Recv YRDPOS 149864
17-03-17 19:47:46.248 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:47:46.248 -07 000000569 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:46.248 -07 000000569 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 19:47:46.248 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.178 mm/sec
17-03-17 19:47:46.718 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:47:46.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:47:47.198 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:47.198 -07 000000438 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:47:47.208 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:47.208 -07 000000569 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:47.228 -07 000000569 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:47:47.228 -07 000000569 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:47:47.228 -07 000000569 INF: Y Motor: Moved to 73.1763 after 1420 ms (table move)
17-03-17 19:47:47.228 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167521 mm (DAC = 36595)
17-03-17 19:47:47.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.228 -07 000000501 INF: FPGA: Recv ZSGSRD 35359
17-03-17 19:47:47.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:47:47.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.238 -07 000000382 INF: FPGA: Recv ZSGSRD 35361
17-03-17 19:47:47.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:47.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.248 -07 000000476 INF: FPGA: Recv ZSGSRD 35364
17-03-17 19:47:47.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:47.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.268 -07 000000478 INF: FPGA: Recv ZSGSRD 35367
17-03-17 19:47:47.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:47:47.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.268 -07 000000569 INF: FPGA: Recv ZSGSRD 35367
17-03-17 19:47:47.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:47:47.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.278 -07 000000431 INF: FPGA: Recv ZSGSRD 35368
17-03-17 19:47:47.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:47.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.288 -07 000000424 INF: FPGA: Recv ZSGSRD 35366
17-03-17 19:47:47.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:47.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.298 -07 000000476 INF: FPGA: Recv ZSGSRD 35364
17-03-17 19:47:47.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:47.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.308 -07 000000501 INF: FPGA: Recv ZSGSRD 35362
17-03-17 19:47:47.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:47.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.318 -07 000000429 INF: FPGA: Recv ZSGSRD 35361
17-03-17 19:47:47.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:47.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:47.328 -07 000000431 INF: FPGA: Recv ZPIEZORD 31319
17-03-17 19:47:47.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:47.338 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.584 V. Piezo Error = -8.9 V.
17-03-17 19:47:47.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35364 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35364 (-166.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35359 (-166.6 uncal um), Max = 35368 (-166.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:47:47.338 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35364, posNoise = 4, negNoise = 5
17-03-17 19:47:47.338 -07 000000610 INF: Z Motor: After move to -0.167521, error = 0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:47.338 -07 000000610 INF: Z Motor: Settle wait time = 1422 ms, measure time = 106 ms (allowed 150 ms), total time = 1528 ms
17-03-17 19:47:47.338 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:47:47.388 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1698 ms
17-03-17 19:47:47.388 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:47:47.388 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.167509190192369. ----------
17-03-17 19:47:47.388 -07 000000610 INF: Cycle	30	Tile	17	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:47:47.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36418, sync = True, waitForSettling = True)
17-03-17 19:47:47.388 -07 000000610 INF: Z Motor: Moving to -0.166711 mm, started at -0.167509 mm, distance = 0.80 um
17-03-17 19:47:47.388 -07 000000610 INF: FPGA: Xmit ZDACW 36418\n [Z Motor]
17-03-17 19:47:47.388 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:47:47.398 -07 000000610 INF: FPGA: 'ZDACW 36418' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:47:47.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:47.398 -07 000000476 INF: FPGA: Recv ZDACR 36418
17-03-17 19:47:47.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:47.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:47:47.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.558 -07 000000561 INF: FPGA: Recv ZSGSRD 35242
17-03-17 19:47:47.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:47.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.568 -07 000000424 INF: FPGA: Recv ZSGSRD 35244
17-03-17 19:47:47.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:47.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.578 -07 000000382 INF: FPGA: Recv ZSGSRD 35232
17-03-17 19:47:47.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:47.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.588 -07 000000593 INF: FPGA: Recv ZSGSRD 35245
17-03-17 19:47:47.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:47.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.598 -07 000000429 INF: FPGA: Recv ZSGSRD 35246
17-03-17 19:47:47.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:47.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.608 -07 000000618 INF: FPGA: Recv ZSGSRD 35243
17-03-17 19:47:47.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:47.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.618 -07 000000438 INF: FPGA: Recv ZSGSRD 35239
17-03-17 19:47:47.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:47.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.628 -07 000000626 INF: FPGA: Recv ZSGSRD 35241
17-03-17 19:47:47.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:47.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.638 -07 000000478 INF: FPGA: Recv ZSGSRD 35242
17-03-17 19:47:47.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:47.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:47.648 -07 000000431 INF: FPGA: Recv ZSGSRD 35238
17-03-17 19:47:47.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:47.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:47.658 -07 000000551 INF: FPGA: Recv ZPIEZORD 31132
17-03-17 19:47:47.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:47.668 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -9.1 V.
17-03-17 19:47:47.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35241 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35242 (-165.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35232 (-165.8 uncal um), Max = 35246 (-165.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:47:47.668 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35241, posNoise = 5, negNoise = 9
17-03-17 19:47:47.668 -07 000000610 INF: Z Motor: After move to -0.166711, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:47.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:47:47.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:47.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:47.668 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:47.668 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:47.668 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:47:47.668 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:47.668 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:47:47.668 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:47:47.668 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:47:47.668 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:47:47.668 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:47:47.668 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:47:47.678 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:47:47.678 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:47:47.678 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:47:47.678 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:47:47.688 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:47:47.688 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:47:47.688 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:47:47.688 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:47:47.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 36595 150\n [Camera]
17-03-17 19:47:47.888 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:47:48.298 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:47:48.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:47:48.298 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:48.298 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:47:48.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:47:48.298 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:48.298 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:48.298 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 19:47:48.298 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:48.298 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:47:48.488 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36595 790
17-03-17 19:47:48.638 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:47:48.678 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:47:48.678 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:47:48.678 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:48.678 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 19:47:48.678 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 19:47:48.678 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:48.678 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:47:48.688 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:47:48.688 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:47:48.688 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:47:48.838 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:47:48.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:47:48.838 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:48.838 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:48.838 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) start.
17-03-17 19:47:48.838 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:47:48.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:47:48.838 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:48.838 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:48.838 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1143115480, 0x0, 418435064) start.
17-03-17 19:47:49.028 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:47:49.028 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:47:49.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 36595 150' command took 2 ms to send, 1323 ms to get response, and 1334 ms overall
17-03-17 19:47:49.028 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.167140
17-03-17 19:47:49.028 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16714 mm
17-03-17 19:47:49.028 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:47:49.028 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:47:49.028 -07 000000478 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 19:47:49.028 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:49.028 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 36512, sync = True, waitForSettling = False)
17-03-17 19:47:49.028 -07 000000382 INF: Z Motor: Moving to -0.167141 mm, started at -0.166719 mm, distance = -0.42 um
17-03-17 19:47:49.038 -07 000000382 INF: FPGA: Xmit ZDACW 36512\n [Z Motor]
17-03-17 19:47:49.038 -07 000000462 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:47:49.038 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:47:49.038 -07 000000478 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:49.038 -07 000000478 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:47:49.038 -07 000000478 INF: Y Motor: Moving 1354 steps-34
17-03-17 19:47:49.038 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:47:49.048 -07 000000382 INF: FPGA: 'ZDACW 36512' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:47:49.048 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:49.048 -07 000000618 INF: FPGA: Recv ZDACR 36512
17-03-17 19:47:49.058 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:47:49.058 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:49.058 -07 000000382 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 19:47:49.228 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1143115480, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 19:47:49.228 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:47:49.228 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:49.228 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 19:47:49.228 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:47:49.228 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:49.238 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:47:49.238 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:47:49.238 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:47:49.238 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:47:49.428 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 19:47:49.428 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 19:47:49.458 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:49.468 -07 000000561 INF: FPGA: Recv YRDPOS 151568
17-03-17 19:47:49.468 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:47:49.468 -07 000000478 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:49.468 -07 000000478 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:47:49.468 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.846 mm, average velocity = 2.137 mm/sec
17-03-17 19:47:50.418 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:50.418 -07 000000382 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:47:50.428 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.428 -07 000000478 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:50.438 -07 000000478 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:47:50.438 -07 000000478 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:47:50.438 -07 000000478 INF: Y Motor: Moved to 74.0083 after 1407 ms (table move)
17-03-17 19:47:50.438 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167141 mm (DAC = 36512)
17-03-17 19:47:50.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.448 -07 000000429 INF: FPGA: Recv ZSGSRD 35312
17-03-17 19:47:50.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:47:50.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.448 -07 000000569 INF: FPGA: Recv ZSGSRD 35299
17-03-17 19:47:50.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:47:50.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.458 -07 000000541 INF: FPGA: Recv ZSGSRD 35296
17-03-17 19:47:50.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.468 -07 000000382 INF: FPGA: Recv ZSGSRD 35316
17-03-17 19:47:50.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.478 -07 000000424 INF: FPGA: Recv ZSGSRD 35302
17-03-17 19:47:50.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.488 -07 000000626 INF: FPGA: Recv ZSGSRD 35310
17-03-17 19:47:50.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:47:50.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.498 -07 000000462 INF: FPGA: Recv ZSGSRD 35310
17-03-17 19:47:50.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.508 -07 000000431 INF: FPGA: Recv ZSGSRD 35310
17-03-17 19:47:50.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.518 -07 000000561 INF: FPGA: Recv ZSGSRD 35309
17-03-17 19:47:50.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.528 -07 000000541 INF: FPGA: Recv ZSGSRD 35300
17-03-17 19:47:50.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:50.538 -07 000000618 INF: FPGA: Recv ZPIEZORD 31195
17-03-17 19:47:50.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.548 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.571 V. Piezo Error = -9.1 V.
17-03-17 19:47:50.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35306 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35310 (-166.3 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 35296 (-166.2 uncal um), Max = 35316 (-166.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:47:50.548 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35306, posNoise = 10, negNoise = 10
17-03-17 19:47:50.548 -07 000000610 INF: Z Motor: After move to -0.167141, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:50.548 -07 000000610 INF: Z Motor: Settle wait time = 1409 ms, measure time = 103 ms (allowed 150 ms), total time = 1512 ms
17-03-17 19:47:50.548 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:47:50.598 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1563 ms
17-03-17 19:47:50.598 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:47:50.598 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.167136585888147. ----------
17-03-17 19:47:50.598 -07 000000610 INF: Cycle	30	Tile	18	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:47:50.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36335, sync = True, waitForSettling = True)
17-03-17 19:47:50.598 -07 000000610 INF: Z Motor: Moving to -0.166331 mm, started at -0.167137 mm, distance = 0.81 um
17-03-17 19:47:50.598 -07 000000610 INF: FPGA: Xmit ZDACW 36335\n [Z Motor]
17-03-17 19:47:50.598 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:47:50.608 -07 000000610 INF: FPGA: 'ZDACW 36335' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:47:50.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:50.608 -07 000000618 INF: FPGA: Recv ZDACR 36335
17-03-17 19:47:50.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:47:50.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.768 -07 000000382 INF: FPGA: Recv ZSGSRD 35183
17-03-17 19:47:50.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:50.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.778 -07 000000462 INF: FPGA: Recv ZSGSRD 35178
17-03-17 19:47:50.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.788 -07 000000424 INF: FPGA: Recv ZSGSRD 35184
17-03-17 19:47:50.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.798 -07 000000482 INF: FPGA: Recv ZSGSRD 35188
17-03-17 19:47:50.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.808 -07 000000431 INF: FPGA: Recv ZSGSRD 35182
17-03-17 19:47:50.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.818 -07 000000382 INF: FPGA: Recv ZSGSRD 35182
17-03-17 19:47:50.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.828 -07 000000462 INF: FPGA: Recv ZSGSRD 35182
17-03-17 19:47:50.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.838 -07 000000424 INF: FPGA: Recv ZSGSRD 35183
17-03-17 19:47:50.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.848 -07 000000618 INF: FPGA: Recv ZSGSRD 35180
17-03-17 19:47:50.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:50.858 -07 000000561 INF: FPGA: Recv ZSGSRD 35181
17-03-17 19:47:50.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:50.868 -07 000000431 INF: FPGA: Recv ZPIEZORD 31063
17-03-17 19:47:50.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:50.878 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.544 V. Piezo Error = -9.1 V.
17-03-17 19:47:50.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35182 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35182 (-165.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35178 (-165.4 uncal um), Max = 35188 (-165.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:47:50.878 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35182, posNoise = 6, negNoise = 4
17-03-17 19:47:50.878 -07 000000610 INF: Z Motor: After move to -0.166331, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:50.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:47:50.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:50.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:50.878 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:50.878 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:50.878 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:47:50.878 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:47:50.878 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:47:50.878 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:50.878 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:47:50.878 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:47:50.878 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:47:50.878 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:47:50.878 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:47:50.878 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:47:50.878 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:47:50.878 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:47:50.898 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:47:50.898 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:47:50.898 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:47:50.898 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:47:50.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 36512 150\n [Camera]
17-03-17 19:47:50.978 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.000345,
17-03-17 19:47:51.098 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:47:51.508 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:47:51.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:47:51.508 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:51.508 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:51.508 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:47:51.508 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:47:51.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:47:51.508 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:51.508 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:51.508 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:47:51.698 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36512 790
17-03-17 19:47:51.718 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:47:51.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:47:51.848 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:47:51.888 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:47:51.888 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:47:51.888 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:51.888 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:47:51.888 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:47:51.888 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:51.888 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:47:51.898 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:47:51.898 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:47:51.898 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:47:52.048 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:47:52.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:47:52.048 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:52.048 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:52.048 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:47:52.048 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:47:52.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:47:52.048 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:52.048 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:52.048 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:47:52.238 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:47:52.238 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:47:52.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 36512 150' command took 2 ms to send, 1324 ms to get response, and 1334 ms overall
17-03-17 19:47:52.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:47:52.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.166339983582569. ------
17-03-17 19:47:52.238 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:47:52.238 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17267 mm
17-03-17 19:47:52.238 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:47:52.248 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:47:52.248 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:47:52.248 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:47:52.248 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:47:52.248 -07 000000431 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 19:47:52.248 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37721, sync = True, waitForSettling = False)
17-03-17 19:47:52.248 -07 000000501 INF: Z Motor: Moving to -0.172676 mm, started at -0.166340 mm, distance = -6.34 um
17-03-17 19:47:52.258 -07 000000501 INF: FPGA: Xmit ZDACW 37721\n [Z Motor]
17-03-17 19:47:52.258 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:47:52.268 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:52.268 -07 000000501 INF: FPGA: 'ZDACW 37721' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:47:52.268 -07 000000476 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:47:52.278 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:47:52.278 -07 000000431 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:52.278 -07 000000431 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:47:52.278 -07 000000431 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:47:52.278 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:52.278 -07 000000547 INF: FPGA: Recv ZDACR 37721
17-03-17 19:47:52.288 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:47:52.288 -07 000000501 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 19:47:52.288 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:47:52.448 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:47:52.448 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:47:52.448 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:52.448 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:47:52.448 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 19:47:52.448 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 19:47:52.448 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:47:52.448 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:52.458 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:52.458 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:47:52.458 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 19:47:52.458 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:47:52.668 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 19:47:52.668 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 19:47:52.688 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:52.688 -07 000000593 INF: FPGA: Recv YRDPOS 153256
17-03-17 19:47:52.698 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:47:52.698 -07 000000431 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:52.698 -07 000000431 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 19:47:52.698 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.165 mm/sec
17-03-17 19:47:53.648 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:53.648 -07 000000551 INF: FPGA: Recv YRDPOS 153256
17-03-17 19:47:53.658 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:47:53.658 -07 000000431 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:53.668 -07 000000431 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:47:53.668 -07 000000431 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:47:53.668 -07 000000431 INF: Y Motor: Moved to 74.8320 after 1422 ms (table move)
17-03-17 19:47:53.668 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172676 mm (DAC = 37721)
17-03-17 19:47:53.668 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:53.678 -07 000000551 INF: FPGA: Recv ZSGSRD 36170
17-03-17 19:47:53.678 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 19:47:53.678 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:53.678 -07 000000618 INF: FPGA: Recv ZSGSRD 36174
17-03-17 19:47:53.688 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:47:53.688 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:53.688 -07 000000501 INF: FPGA: Recv ZSGSRD 36167
17-03-17 19:47:53.698 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:53.698 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:53.698 -07 000000541 INF: FPGA: Recv ZSGSRD 36180
17-03-17 19:47:53.708 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:53.708 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:53.708 -07 000000431 INF: FPGA: Recv ZSGSRD 36171
17-03-17 19:47:53.718 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:53.718 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:53.718 -07 000000424 INF: FPGA: Recv ZSGSRD 36173
17-03-17 19:47:53.728 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:53.728 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:53.728 -07 000000561 INF: FPGA: Recv ZSGSRD 36168
17-03-17 19:47:53.738 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:53.738 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:53.738 -07 000000618 INF: FPGA: Recv ZSGSRD 36168
17-03-17 19:47:53.748 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:53.748 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:53.748 -07 000000382 INF: FPGA: Recv ZSGSRD 36162
17-03-17 19:47:53.758 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:53.758 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:53.758 -07 000000431 INF: FPGA: Recv ZSGSRD 36160
17-03-17 19:47:53.768 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:53.768 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:53.768 -07 000000476 INF: FPGA: Recv ZPIEZORD 32371
17-03-17 19:47:53.778 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:53.778 -07 000000486 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.756 V. Piezo Error = -8.4 V.
17-03-17 19:47:53.778 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36169 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36169 (-171.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36160 (-171.7 uncal um), Max = 36180 (-171.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:47:53.778 -07 000000486 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36169, posNoise = 11, negNoise = 9
17-03-17 19:47:53.778 -07 000000486 INF: Z Motor: After move to -0.172676, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:53.778 -07 000000486 INF: Z Motor: Settle wait time = 1425 ms, measure time = 103 ms (allowed 150 ms), total time = 1528 ms
17-03-17 19:47:53.778 -07 000000486 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:47:53.828 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 19:47:53.828 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:47:53.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:53.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:53.828 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:53.828 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:53.828 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:47:53.828 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:53.828 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:47:53.828 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:47:53.838 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:47:53.838 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:47:53.848 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 19:47:53.848 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:47:53.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:47:53.898 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:47:54.098 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:47:54.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:47:54.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:47:54.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591925008, 0x0, 559484976) start.
17-03-17 19:47:54.138 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:47:54.138 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 19:47:54.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 19:47:54.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591925008, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:47:54.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:54.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:47:54.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:47:54.238 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:47:54.238 -07 000000424 INF: Autofocus start
17-03-17 19:47:54.238 -07 000000424 INF: MeasureProfile start
17-03-17 19:47:54.238 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:47:54.248 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:47:54.248 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:47:54.248 -07 000000424 INF: MeasureProfile done
17-03-17 19:47:54.248 -07 000000424 INF: X=32  Z correction [um]=0.09220707
17-03-17 19:47:54.248 -07 000000424 INF: Autofocus finished
17-03-17 19:47:54.448 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:47:54.448 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:47:54.448 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.172680680966487. ----------
17-03-17 19:47:54.448 -07 000000610 INF: Cycle	30	Tile	19	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:47:54.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36253, sync = True, waitForSettling = True)
17-03-17 19:47:54.458 -07 000000610 INF: Z Motor: Moving to -0.165956 mm, started at -0.172681 mm, distance = 6.73 um
17-03-17 19:47:54.458 -07 000000610 INF: FPGA: Xmit ZDACW 36253\n [Z Motor]
17-03-17 19:47:54.458 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:47:54.468 -07 000000610 INF: FPGA: 'ZDACW 36253' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:54.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:54.468 -07 000000476 INF: FPGA: Recv ZDACR 36253
17-03-17 19:47:54.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:54.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:47:54.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:54.628 -07 000000424 INF: FPGA: Recv ZSGSRD 35121
17-03-17 19:47:54.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:54.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:54.638 -07 000000431 INF: FPGA: Recv ZSGSRD 35123
17-03-17 19:47:54.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:47:54.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:54.648 -07 000000626 INF: FPGA: Recv ZSGSRD 35121
17-03-17 19:47:54.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:54.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:54.658 -07 000000593 INF: FPGA: Recv ZSGSRD 35126
17-03-17 19:47:54.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:54.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:54.668 -07 000000424 INF: FPGA: Recv ZSGSRD 35128
17-03-17 19:47:54.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:54.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:54.678 -07 000000476 INF: FPGA: Recv ZSGSRD 35121
17-03-17 19:47:54.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:54.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:54.688 -07 000000429 INF: FPGA: Recv ZSGSRD 35122
17-03-17 19:47:54.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:54.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:54.698 -07 000000486 INF: FPGA: Recv ZSGSRD 35120
17-03-17 19:47:54.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:54.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:54.708 -07 000000482 INF: FPGA: Recv ZSGSRD 35120
17-03-17 19:47:54.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:54.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:47:54.718 -07 000000424 INF: FPGA: Recv ZSGSRD 35128
17-03-17 19:47:54.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:54.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:47:54.728 -07 000000431 INF: FPGA: Recv ZPIEZORD 30972
17-03-17 19:47:54.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:47:54.738 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.532 V. Piezo Error = -9.2 V.
17-03-17 19:47:54.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35123 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35122 (-165.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35120 (-165.1 uncal um), Max = 35128 (-165.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:47:54.738 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35123, posNoise = 5, negNoise = 3
17-03-17 19:47:54.738 -07 000000610 INF: Z Motor: After move to -0.165956, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:47:54.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:47:54.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:47:54.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:47:54.738 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:47:54.738 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:47:54.738 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:47:54.738 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:47:54.738 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:47:54.738 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:47:54.738 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:47:54.738 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:47:54.738 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:47:54.738 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:47:54.738 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:47:54.738 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:47:54.738 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:47:54.748 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:47:54.758 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:47:54.758 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:47:54.758 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:47:54.758 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:47:54.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 36430 150\n [Camera]
17-03-17 19:47:54.958 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:47:55.368 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:47:55.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:47:55.368 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:55.368 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:55.368 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:47:55.368 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:47:55.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:47:55.368 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:55.368 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:55.368 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:47:55.558 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36430 790
17-03-17 19:47:55.708 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:47:55.748 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:47:55.748 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:47:55.748 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:55.748 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:47:55.748 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:47:55.748 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:55.748 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:47:55.748 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:47:55.758 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:47:55.758 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:47:55.908 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:47:55.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:47:55.908 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:47:55.908 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:47:55.908 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 19:47:55.908 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:47:55.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:47:55.908 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:47:55.908 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:47:55.908 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:47:56.188 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:47:56.188 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:47:56.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 36430 150' command took 2 ms to send, 1411 ms to get response, and 1423 ms overall
17-03-17 19:47:56.298 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 19:47:56.298 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:47:56.298 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:56.298 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 19:47:56.298 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:47:56.298 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:47:56.298 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:47:56.308 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:47:56.308 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:47:56.308 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:47:56.308 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:47:56.338 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.993549,
17-03-17 19:47:56.348 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 19:47:56.348 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:47:56.388 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 19:47:56.388 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 19:47:56.388 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:47:56.398 -07 000000561 INF: FPGA: Recv EMCUR 
17-03-17 19:47:56.398 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:47:56.398 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 19:47:56.718 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:47:56.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:47:56.898 -07 000000547 INF: FPGA: Recv EMIN
17-03-17 19:47:56.898 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 495 ms to get response, and 502 ms overall
17-03-17 19:47:56.918 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 19:47:56.918 -07 000000431 INF: FPGA: Recv EMCUR 
17-03-17 19:47:56.928 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:47:56.928 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:47:56.928 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.165960955066205. ------
17-03-17 19:47:56.928 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14032 mm
17-03-17 19:47:56.928 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:47:56.928 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30652, sync = True, waitForSettling = False)
17-03-17 19:47:56.928 -07 000000431 INF: Z Motor: Moving to -0.140316 mm, started at -0.165961 mm, distance = 25.65 um
17-03-17 19:47:56.928 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:47:56.928 -07 000000424 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-17 19:47:56.948 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:47:56.948 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:47:56.958 -07 000000431 INF: FPGA: Xmit ZDACW 30652\n [Z Motor]
17-03-17 19:47:56.958 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:47:56.958 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:47:56.968 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:47:56.968 -07 000000431 INF: FPGA: 'ZDACW 30652' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:47:56.968 -07 000000476 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:47:56.978 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 40 ms overall
17-03-17 19:47:56.978 -07 000000424 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:47:56.978 -07 000000424 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 19:47:56.978 -07 000000424 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:47:56.988 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:47:56.998 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:47:56.998 -07 000000438 INF: FPGA: Recv ZDACR 30652
17-03-17 19:47:57.008 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 19:47:57.008 -07 000000431 INF: Z Motor: MoveAbsStepped took 71 ms (did NOT wait for settling yet))
17-03-17 19:47:57.008 -07 000000424 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:47:57.188 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:47:57.188 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 19:47:58.628 -07 000000462 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 19:47:58.628 -07 000000424 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1654 ms overall
17-03-17 19:47:58.628 -07 000000424 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:47:58.628 -07 000000424 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23873 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 19:47:58.628 -07 000000424 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1654 ms, distance = 14.919 mm, average velocity = 9.020 mm/sec
17-03-17 19:48:01.478 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:01.478 -07 000000462 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:48:01.488 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:01.488 -07 000000424 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:01.508 -07 000000424 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:48:01.508 -07 000000424 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 19:48:01.508 -07 000000424 INF: Y Motor: Moved to 59.9116 after 4579 ms
17-03-17 19:48:01.518 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140316 mm (DAC = 30652)
17-03-17 19:48:01.518 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:01.518 -07 000000551 INF: FPGA: Recv ZSGSRD 31133
17-03-17 19:48:01.528 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:48:01.528 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:01.528 -07 000000593 INF: FPGA: Recv ZSGSRD 31131
17-03-17 19:48:01.538 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:01.538 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:01.538 -07 000000431 INF: FPGA: Recv ZSGSRD 31129
17-03-17 19:48:01.548 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:01.548 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:01.548 -07 000000478 INF: FPGA: Recv ZSGSRD 31132
17-03-17 19:48:01.558 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:01.558 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:01.558 -07 000000541 INF: FPGA: Recv ZSGSRD 31128
17-03-17 19:48:01.568 -07 000000382 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:01.568 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:01.568 -07 000000482 INF: FPGA: Recv ZSGSRD 31132
17-03-17 19:48:01.578 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:01.578 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:01.578 -07 000000501 INF: FPGA: Recv ZSGSRD 31135
17-03-17 19:48:01.588 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:01.588 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:01.588 -07 000000561 INF: FPGA: Recv ZSGSRD 31134
17-03-17 19:48:01.598 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:01.598 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:01.598 -07 000000569 INF: FPGA: Recv ZSGSRD 31132
17-03-17 19:48:01.608 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:01.608 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:01.608 -07 000000462 INF: FPGA: Recv ZSGSRD 31134
17-03-17 19:48:01.618 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:01.618 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:01.618 -07 000000482 INF: FPGA: Recv ZPIEZORD 26765
17-03-17 19:48:01.628 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:01.628 -07 000000382 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.677 V. Piezo Error = -9.6 V.
17-03-17 19:48:01.628 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.3 um, Read 10 ADC samples: Avg = 31132 (-139.5 uncal um), Error = 0.8 uncal um, Median = 31132 (-139.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 31128 (-139.5 uncal um), Max = 31135 (-139.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:48:01.628 -07 000000382 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31132, posNoise = 3, negNoise = 4
17-03-17 19:48:01.628 -07 000000382 INF: Z Motor: After move to -0.140316, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:01.628 -07 000000382 INF: Z Motor: Settle wait time = 4582 ms, measure time = 109 ms (allowed 150 ms), total time = 4691 ms
17-03-17 19:48:01.628 -07 000000382 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 19:48:01.678 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4743 ms
17-03-17 19:48:01.678 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:48:01.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:01.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:01.678 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:01.678 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:01.678 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:48:01.678 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:01.678 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:48:01.678 -07 000000429 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:48:01.698 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.988112,
17-03-17 19:48:01.708 -07 000000429 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 19:48:01.708 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:48:01.708 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:48:01.708 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:48:01.718 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:48:01.718 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 39 ms.
17-03-17 19:48:01.718 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:48:01.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:48:01.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:48:01.768 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:48:01.968 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:48:01.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:48:01.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:48:01.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:48:02.008 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:48:02.008 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 19:48:02.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 287 ms overall
17-03-17 19:48:02.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:48:02.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:02.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:48:02.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:48:02.108 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:48:02.108 -07 000000486 INF: Image SNR check: start
17-03-17 19:48:02.108 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:48:02.118 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:48:02.118 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:48:02.118 -07 000000486 INF: Image SNR check: pass  [peak (Max-Min)=64.15]
17-03-17 19:48:02.118 -07 000000486 INF: Autofocus start
17-03-17 19:48:02.118 -07 000000486 INF: MeasureProfile start
17-03-17 19:48:02.128 -07 000000486 INF: MeasureProfile done
17-03-17 19:48:02.128 -07 000000486 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:48:02.128 -07 000000486 INF: Autofocus finished
17-03-17 19:48:02.318 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:48:02.318 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 19:48:02.318 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.140321924408437. ----------
17-03-17 19:48:02.328 -07 000000610 INF: Cycle	30	Tile	1	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:48:02.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29177, sync = True, waitForSettling = True)
17-03-17 19:48:02.328 -07 000000610 INF: Z Motor: Moving to -0.133564 mm, started at -0.140322 mm, distance = 6.76 um
17-03-17 19:48:02.348 -07 000000610 INF: FPGA: Xmit ZDACW 29177\n [Z Motor]
17-03-17 19:48:02.348 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:48:02.358 -07 000000610 INF: FPGA: 'ZDACW 29177' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:48:02.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:02.358 -07 000000561 INF: FPGA: Recv ZDACR 29177
17-03-17 19:48:02.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:02.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:48:02.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:02.518 -07 000000547 INF: FPGA: Recv ZSGSRD 30076
17-03-17 19:48:02.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:02.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:02.528 -07 000000478 INF: FPGA: Recv ZSGSRD 30073
17-03-17 19:48:02.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:02.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:02.538 -07 000000501 INF: FPGA: Recv ZSGSRD 30082
17-03-17 19:48:02.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:02.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:02.548 -07 000000424 INF: FPGA: Recv ZSGSRD 30081
17-03-17 19:48:02.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:02.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:02.558 -07 000000561 INF: FPGA: Recv ZSGSRD 30081
17-03-17 19:48:02.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:02.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:02.568 -07 000000547 INF: FPGA: Recv ZSGSRD 30075
17-03-17 19:48:02.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:02.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:02.578 -07 000000478 INF: FPGA: Recv ZSGSRD 30080
17-03-17 19:48:02.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:02.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:02.588 -07 000000501 INF: FPGA: Recv ZSGSRD 30084
17-03-17 19:48:02.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:02.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:02.598 -07 000000424 INF: FPGA: Recv ZSGSRD 30075
17-03-17 19:48:02.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:02.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:02.608 -07 000000561 INF: FPGA: Recv ZSGSRD 30077
17-03-17 19:48:02.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:02.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:02.618 -07 000000626 INF: FPGA: Recv ZPIEZORD 25671
17-03-17 19:48:02.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:02.628 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.452 V. Piezo Error = -9.7 V.
17-03-17 19:48:02.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30078 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30078 (-132.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30073 (-132.7 uncal um), Max = 30084 (-132.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:48:02.628 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30078, posNoise = 6, negNoise = 5
17-03-17 19:48:02.628 -07 000000610 INF: Z Motor: After move to -0.133564, error = 0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:02.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 298 ms)
17-03-17 19:48:02.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:02.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:02.628 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:02.628 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:02.628 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:48:02.628 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:48:02.628 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:02.628 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:48:02.628 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:48:02.628 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:48:02.628 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:48:02.628 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:48:02.638 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:48:02.638 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:48:02.648 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:48:02.648 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:48:02.648 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 19:48:02.648 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:48:02.658 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:48:02.658 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:48:02.658 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:48:02.658 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 19:48:02.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 29353 150\n [Camera]
17-03-17 19:48:02.868 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:48:03.268 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:48:03.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:48:03.268 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:03.268 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:48:03.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:48:03.278 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:03.278 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:48:03.278 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:03.288 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:03.318 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:48:03.458 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29353 790
17-03-17 19:48:03.608 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:48:03.658 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:48:03.658 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:48:03.658 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:03.668 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:03.668 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:48:03.698 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:48:03.698 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 19:48:03.698 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:03.708 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:03.708 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 434 ms.
17-03-17 19:48:03.808 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:48:03.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:48:03.808 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:03.808 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:48:03.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:48:03.808 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:03.938 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:03.938 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:48:03.938 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:03.938 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:48:03.998 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:48:03.998 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:48:03.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 29353 150' command took 2 ms to send, 1326 ms to get response, and 1334 ms overall
17-03-17 19:48:03.998 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.133993
17-03-17 19:48:03.998 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13399 mm
17-03-17 19:48:03.998 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:48:04.008 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:48:04.008 -07 000000569 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 19:48:04.008 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:04.008 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29271, sync = True, waitForSettling = False)
17-03-17 19:48:04.008 -07 000000438 INF: Z Motor: Moving to -0.133994 mm, started at -0.133551 mm, distance = -0.44 um
17-03-17 19:48:04.008 -07 000000541 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:48:04.018 -07 000000438 INF: FPGA: Xmit ZDACW 29271\n [Z Motor]
17-03-17 19:48:04.018 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:48:04.018 -07 000000569 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:04.018 -07 000000569 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:48:04.018 -07 000000569 INF: Y Motor: Moving 1330 steps2
17-03-17 19:48:04.018 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:48:04.028 -07 000000438 INF: FPGA: 'ZDACW 29271' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:48:04.028 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:04.028 -07 000000561 INF: FPGA: Recv ZDACR 29271
17-03-17 19:48:04.038 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:48:04.038 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:04.038 -07 000000438 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 19:48:04.318 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:48:04.318 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:48:04.318 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:04.318 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 19:48:04.318 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:48:04.318 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:04.328 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:48:04.328 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-17 19:48:04.328 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:48:04.328 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-17 19:48:04.408 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:48:04.408 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:48:04.438 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:04.448 -07 000000462 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:48:04.448 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:48:04.448 -07 000000569 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:04.448 -07 000000569 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:48:04.448 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.093 mm/sec
17-03-17 19:48:05.398 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:05.398 -07 000000541 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:48:05.408 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:05.408 -07 000000569 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:05.428 -07 000000569 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:48:05.428 -07 000000569 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:48:05.428 -07 000000569 INF: Y Motor: Moved to 60.7334 after 1420 ms (table move)
17-03-17 19:48:05.428 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133994 mm (DAC = 29271)
17-03-17 19:48:05.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.428 -07 000000482 INF: FPGA: Recv ZSGSRD 30140
17-03-17 19:48:05.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:48:05.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.438 -07 000000551 INF: FPGA: Recv ZSGSRD 30138
17-03-17 19:48:05.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.448 -07 000000476 INF: FPGA: Recv ZSGSRD 30148
17-03-17 19:48:05.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.458 -07 000000618 INF: FPGA: Recv ZSGSRD 30142
17-03-17 19:48:05.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.468 -07 000000561 INF: FPGA: Recv ZSGSRD 30154
17-03-17 19:48:05.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.478 -07 000000593 INF: FPGA: Recv ZSGSRD 30151
17-03-17 19:48:05.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.488 -07 000000551 INF: FPGA: Recv ZSGSRD 30145
17-03-17 19:48:05.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.498 -07 000000462 INF: FPGA: Recv ZSGSRD 30150
17-03-17 19:48:05.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.508 -07 000000569 INF: FPGA: Recv ZSGSRD 30139
17-03-17 19:48:05.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.518 -07 000000424 INF: FPGA: Recv ZSGSRD 30142
17-03-17 19:48:05.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:05.528 -07 000000482 INF: FPGA: Recv ZPIEZORD 25829
17-03-17 19:48:05.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.538 -07 000000610 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.466 V. Piezo Error = -9.5 V.
17-03-17 19:48:05.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.0 um, Read 10 ADC samples: Avg = 30145 (-133.2 uncal um), Error = 0.8 uncal um, Median = 30144 (-133.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30138 (-133.1 uncal um), Max = 30154 (-133.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:48:05.538 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30145, posNoise = 9, negNoise = 7
17-03-17 19:48:05.538 -07 000000610 INF: Z Motor: After move to -0.133994, error = 0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:05.538 -07 000000610 INF: Z Motor: Settle wait time = 1422 ms, measure time = 106 ms (allowed 150 ms), total time = 1528 ms
17-03-17 19:48:05.538 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:48:05.588 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 19:48:05.588 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:48:05.588 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.133981227024519. ----------
17-03-17 19:48:05.588 -07 000000610 INF: Cycle	30	Tile	2	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:48:05.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29094, sync = True, waitForSettling = True)
17-03-17 19:48:05.588 -07 000000610 INF: Z Motor: Moving to -0.133184 mm, started at -0.133981 mm, distance = 0.80 um
17-03-17 19:48:05.588 -07 000000610 INF: FPGA: Xmit ZDACW 29094\n [Z Motor]
17-03-17 19:48:05.588 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:48:05.598 -07 000000610 INF: FPGA: 'ZDACW 29094' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:48:05.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:05.598 -07 000000547 INF: FPGA: Recv ZDACR 29094
17-03-17 19:48:05.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:48:05.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.758 -07 000000431 INF: FPGA: Recv ZSGSRD 30020
17-03-17 19:48:05.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:05.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.768 -07 000000551 INF: FPGA: Recv ZSGSRD 30025
17-03-17 19:48:05.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.778 -07 000000424 INF: FPGA: Recv ZSGSRD 30027
17-03-17 19:48:05.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.788 -07 000000569 INF: FPGA: Recv ZSGSRD 30021
17-03-17 19:48:05.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.798 -07 000000626 INF: FPGA: Recv ZSGSRD 30022
17-03-17 19:48:05.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.808 -07 000000476 INF: FPGA: Recv ZSGSRD 30019
17-03-17 19:48:05.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.818 -07 000000551 INF: FPGA: Recv ZSGSRD 30017
17-03-17 19:48:05.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.828 -07 000000431 INF: FPGA: Recv ZSGSRD 30022
17-03-17 19:48:05.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.838 -07 000000569 INF: FPGA: Recv ZSGSRD 30021
17-03-17 19:48:05.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:05.848 -07 000000541 INF: FPGA: Recv ZSGSRD 30024
17-03-17 19:48:05.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:05.858 -07 000000561 INF: FPGA: Recv ZPIEZORD 25662
17-03-17 19:48:05.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:05.868 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.439 V. Piezo Error = -9.6 V.
17-03-17 19:48:05.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30022 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30022 (-132.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30017 (-132.4 uncal um), Max = 30027 (-132.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:48:05.868 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30022, posNoise = 5, negNoise = 5
17-03-17 19:48:05.868 -07 000000610 INF: Z Motor: After move to -0.133184, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:05.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:48:05.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:05.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:05.868 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:05.868 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:05.868 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:48:05.868 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:05.868 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:48:05.868 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:48:05.868 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:48:05.868 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:48:05.868 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:48:05.868 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:48:05.868 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:48:05.868 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:48:05.878 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:48:05.878 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:48:05.888 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:48:05.888 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:48:05.888 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:48:05.888 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:48:05.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 29271 150\n [Camera]
17-03-17 19:48:06.098 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:48:06.498 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:48:06.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:48:06.498 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:06.498 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:48:06.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:48:06.498 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:06.508 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:06.508 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:48:06.508 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:06.508 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:48:06.688 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29271 790
17-03-17 19:48:06.718 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:48:06.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:48:06.838 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:48:06.898 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 19:48:06.898 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:48:06.898 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:06.898 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:06.898 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:48:06.908 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 19:48:06.908 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:48:06.908 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:06.908 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:06.918 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:48:07.038 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:48:07.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:48:07.038 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:07.038 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:07.038 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:48:07.038 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:48:07.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:48:07.038 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:07.038 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:07.038 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:48:07.068 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.985358,
17-03-17 19:48:07.228 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:48:07.228 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:48:07.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 29271 150' command took 2 ms to send, 1325 ms to get response, and 1334 ms overall
17-03-17 19:48:07.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:48:07.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.133191048931082. ------
17-03-17 19:48:07.238 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:48:07.238 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13995 mm
17-03-17 19:48:07.238 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:48:07.238 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:48:07.238 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:48:07.238 -07 000000429 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 19:48:07.238 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30572, sync = True, waitForSettling = False)
17-03-17 19:48:07.238 -07 000000551 INF: Z Motor: Moving to -0.139950 mm, started at -0.133191 mm, distance = -6.76 um
17-03-17 19:48:07.248 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:07.248 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:07.248 -07 000000561 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:48:07.258 -07 000000551 INF: FPGA: Xmit ZDACW 30572\n [Z Motor]
17-03-17 19:48:07.258 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:48:07.258 -07 000000429 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:07.258 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:48:07.258 -07 000000429 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:48:07.258 -07 000000429 INF: Y Motor: Moving 1342 steps-19
17-03-17 19:48:07.268 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:48:07.268 -07 000000551 INF: FPGA: 'ZDACW 30572' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:48:07.278 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:48:07.288 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:07.288 -07 000000486 INF: FPGA: Recv ZDACR 30572
17-03-17 19:48:07.298 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:48:07.298 -07 000000551 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 19:48:07.438 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 19:48:07.438 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:48:07.438 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:07.438 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:48:07.438 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:48:07.438 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:07.448 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:48:07.448 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:48:07.448 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:48:07.448 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:48:07.468 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:48:07.468 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:48:07.648 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 19:48:07.648 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 392 ms overall
17-03-17 19:48:07.708 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:07.708 -07 000000561 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:48:07.718 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:48:07.718 -07 000000429 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:07.718 -07 000000429 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:48:07.718 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.141 mm/sec
17-03-17 19:48:08.668 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:08.668 -07 000000431 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:48:08.678 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:08.678 -07 000000429 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:08.698 -07 000000429 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:48:08.698 -07 000000429 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:48:08.698 -07 000000429 INF: Y Motor: Moved to 61.5645 after 1458 ms (table move)
17-03-17 19:48:08.698 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139950 mm (DAC = 30572)
17-03-17 19:48:08.698 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:08.698 -07 000000478 INF: FPGA: Recv ZSGSRD 31072
17-03-17 19:48:08.708 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:48:08.708 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:08.708 -07 000000618 INF: FPGA: Recv ZSGSRD 31078
17-03-17 19:48:08.718 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:08.718 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:08.718 -07 000000547 INF: FPGA: Recv ZSGSRD 31076
17-03-17 19:48:08.728 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:08.728 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:08.728 -07 000000476 INF: FPGA: Recv ZSGSRD 31087
17-03-17 19:48:08.738 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:08.738 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:08.738 -07 000000541 INF: FPGA: Recv ZSGSRD 31081
17-03-17 19:48:08.748 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:08.748 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:08.748 -07 000000482 INF: FPGA: Recv ZSGSRD 31073
17-03-17 19:48:08.758 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:08.758 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:08.758 -07 000000561 INF: FPGA: Recv ZSGSRD 31081
17-03-17 19:48:08.768 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:08.768 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:08.768 -07 000000547 INF: FPGA: Recv ZSGSRD 31071
17-03-17 19:48:08.778 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:08.778 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:08.778 -07 000000626 INF: FPGA: Recv ZSGSRD 31072
17-03-17 19:48:08.788 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:08.788 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:08.788 -07 000000431 INF: FPGA: Recv ZSGSRD 31075
17-03-17 19:48:08.798 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:08.798 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:08.798 -07 000000482 INF: FPGA: Recv ZPIEZORD 27041
17-03-17 19:48:08.808 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:08.808 -07 000000438 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.665 V. Piezo Error = -8.9 V.
17-03-17 19:48:08.808 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31077 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31076 (-139.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31071 (-139.1 uncal um), Max = 31087 (-139.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:48:08.808 -07 000000438 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31077, posNoise = 10, negNoise = 6
17-03-17 19:48:08.808 -07 000000438 INF: Z Motor: After move to -0.139950, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:08.808 -07 000000438 INF: Z Motor: Settle wait time = 1461 ms, measure time = 105 ms (allowed 150 ms), total time = 1566 ms
17-03-17 19:48:08.808 -07 000000438 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:48:08.858 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-17 19:48:08.858 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:48:08.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:08.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:08.858 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:08.858 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:08.858 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:48:08.858 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:08.868 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:48:08.868 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:48:08.868 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:48:08.868 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:48:08.878 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:48:08.878 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:48:08.878 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:48:08.928 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:48:09.128 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:48:09.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:48:09.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:48:09.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:48:09.168 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:48:09.168 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 19:48:09.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 19:48:09.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:48:09.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:09.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:48:09.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:48:09.268 -07 000000541 INF: Autofocus start
17-03-17 19:48:09.268 -07 000000541 INF: MeasureProfile start
17-03-17 19:48:09.268 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:48:09.268 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:48:09.278 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:48:09.278 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:48:09.278 -07 000000541 INF: MeasureProfile done
17-03-17 19:48:09.278 -07 000000541 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:48:09.278 -07 000000541 INF: Autofocus finished
17-03-17 19:48:09.478 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:48:09.478 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:48:09.478 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.13996859274064. ----------
17-03-17 19:48:09.478 -07 000000610 INF: Cycle	30	Tile	3	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:48:09.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29097, sync = True, waitForSettling = True)
17-03-17 19:48:09.488 -07 000000610 INF: Z Motor: Moving to -0.133198 mm, started at -0.139969 mm, distance = 6.77 um
17-03-17 19:48:09.488 -07 000000610 INF: FPGA: Xmit ZDACW 29097\n [Z Motor]
17-03-17 19:48:09.488 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:48:09.498 -07 000000610 INF: FPGA: 'ZDACW 29097' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:09.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:09.498 -07 000000382 INF: FPGA: Recv ZDACR 29097
17-03-17 19:48:09.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:09.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:48:09.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:09.658 -07 000000462 INF: FPGA: Recv ZSGSRD 30023
17-03-17 19:48:09.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:09.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:09.668 -07 000000438 INF: FPGA: Recv ZSGSRD 30020
17-03-17 19:48:09.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:09.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:09.678 -07 000000462 INF: FPGA: Recv ZSGSRD 30022
17-03-17 19:48:09.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:09.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:09.688 -07 000000618 INF: FPGA: Recv ZSGSRD 30024
17-03-17 19:48:09.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:09.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:09.698 -07 000000541 INF: FPGA: Recv ZSGSRD 30021
17-03-17 19:48:09.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:09.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:09.708 -07 000000618 INF: FPGA: Recv ZSGSRD 30029
17-03-17 19:48:09.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:09.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:09.718 -07 000000429 INF: FPGA: Recv ZSGSRD 30019
17-03-17 19:48:09.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:09.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:09.728 -07 000000431 INF: FPGA: Recv ZSGSRD 30021
17-03-17 19:48:09.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:09.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:09.738 -07 000000482 INF: FPGA: Recv ZSGSRD 30024
17-03-17 19:48:09.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:09.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:09.748 -07 000000424 INF: FPGA: Recv ZSGSRD 30025
17-03-17 19:48:09.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:09.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:09.758 -07 000000547 INF: FPGA: Recv ZPIEZORD 25660
17-03-17 19:48:09.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:09.768 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.440 V. Piezo Error = -9.6 V.
17-03-17 19:48:09.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30023 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30022 (-132.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30019 (-132.4 uncal um), Max = 30029 (-132.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:48:09.768 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30023, posNoise = 6, negNoise = 4
17-03-17 19:48:09.768 -07 000000610 INF: Z Motor: After move to -0.133198, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:09.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:48:09.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:09.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:09.768 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:09.768 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:09.768 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:48:09.768 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:09.768 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:48:09.768 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:48:09.768 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:48:09.768 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:48:09.768 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:48:09.768 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:48:09.778 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:48:09.778 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:48:09.778 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:48:09.778 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:48:09.778 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:48:09.788 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:48:09.788 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:48:09.788 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:48:09.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 29273 150\n [Camera]
17-03-17 19:48:09.988 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:48:10.388 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:48:10.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:48:10.398 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:10.398 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:10.398 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1151926088, 0x0, 391868352) start.
17-03-17 19:48:10.398 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:48:10.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:48:10.398 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:10.398 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:10.398 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:48:10.588 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29273 792
17-03-17 19:48:10.738 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:48:10.778 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1151926088, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:48:10.778 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:48:10.778 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:10.778 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:48:10.778 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:48:10.778 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:10.778 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:48:10.778 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:48:10.788 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:48:10.798 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:48:10.928 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:48:10.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:48:10.928 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:10.928 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:10.928 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:48:10.928 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:48:10.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:48:10.938 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:10.938 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:10.938 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:48:11.118 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:48:11.118 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:48:11.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 29273 150' command took 2 ms to send, 1328 ms to get response, and 1334 ms overall
17-03-17 19:48:11.128 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.133455
17-03-17 19:48:11.238 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13346 mm
17-03-17 19:48:11.238 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:48:11.238 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:48:11.238 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29153, sync = True, waitForSettling = False)
17-03-17 19:48:11.238 -07 000000462 INF: Z Motor: Moving to -0.133454 mm, started at -0.133197 mm, distance = -0.26 um
17-03-17 19:48:11.238 -07 000000462 INF: FPGA: Xmit ZDACW 29153\n [Z Motor]
17-03-17 19:48:11.238 -07 000000382 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 19:48:11.238 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 19:48:11.248 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:11.248 -07 000000462 INF: FPGA: 'ZDACW 29153' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:48:11.248 -07 000000593 INF: FPGA: Recv YRDPOS 126085
17-03-17 19:48:11.258 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:48:11.258 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:11.258 -07 000000382 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:11.258 -07 000000382 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:48:11.258 -07 000000382 INF: Y Motor: Moving 1340 steps-17
17-03-17 19:48:11.258 -07 000000561 INF: FPGA: Recv ZDACR 29153
17-03-17 19:48:11.268 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:48:11.268 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:48:11.268 -07 000000462 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 19:48:11.318 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:48:11.318 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:48:11.318 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:11.318 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:48:11.318 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:48:11.318 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:11.318 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:11.318 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:48:11.318 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:48:11.328 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:48:11.638 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 19:48:11.638 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 19:48:11.678 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:11.678 -07 000000476 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:48:11.688 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:48:11.688 -07 000000382 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:11.688 -07 000000382 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:48:11.688 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.183 mm/sec
17-03-17 19:48:11.718 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:48:11.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:48:12.428 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.98264,
17-03-17 19:48:12.638 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:12.638 -07 000000478 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:48:12.648 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:12.648 -07 000000382 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:12.668 -07 000000382 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:48:12.668 -07 000000382 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:48:12.668 -07 000000382 INF: Y Motor: Moved to 62.3960 after 1424 ms (table move)
17-03-17 19:48:12.668 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133454 mm (DAC = 29153)
17-03-17 19:48:12.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:12.668 -07 000000593 INF: FPGA: Recv ZSGSRD 30068
17-03-17 19:48:12.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:48:12.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:12.678 -07 000000551 INF: FPGA: Recv ZSGSRD 30062
17-03-17 19:48:12.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:12.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:12.688 -07 000000462 INF: FPGA: Recv ZSGSRD 30063
17-03-17 19:48:12.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:12.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:12.698 -07 000000541 INF: FPGA: Recv ZSGSRD 30066
17-03-17 19:48:12.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:12.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:12.718 -07 000000569 INF: FPGA: Recv ZSGSRD 30064
17-03-17 19:48:12.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:48:12.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:12.728 -07 000000551 INF: FPGA: Recv ZSGSRD 30062
17-03-17 19:48:12.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:12.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:12.738 -07 000000424 INF: FPGA: Recv ZSGSRD 30062
17-03-17 19:48:12.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:12.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:12.748 -07 000000438 INF: FPGA: Recv ZSGSRD 30055
17-03-17 19:48:12.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:12.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:12.758 -07 000000593 INF: FPGA: Recv ZSGSRD 30067
17-03-17 19:48:12.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:12.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:12.768 -07 000000501 INF: FPGA: Recv ZSGSRD 30066
17-03-17 19:48:12.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:12.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:12.778 -07 000000561 INF: FPGA: Recv ZPIEZORD 25779
17-03-17 19:48:12.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:12.788 -07 000000610 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.448 V. Piezo Error = -9.4 V.
17-03-17 19:48:12.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30064 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30064 (-132.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30055 (-132.6 uncal um), Max = 30068 (-132.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:48:12.788 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30064, posNoise = 4, negNoise = 9
17-03-17 19:48:12.788 -07 000000610 INF: Z Motor: After move to -0.133454, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:12.788 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 117 ms (allowed 150 ms), total time = 1543 ms
17-03-17 19:48:12.788 -07 000000610 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 19:48:12.828 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 19:48:12.828 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:48:12.828 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.133460865841036. ----------
17-03-17 19:48:12.828 -07 000000610 INF: Cycle	30	Tile	4	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:48:12.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28977, sync = True, waitForSettling = True)
17-03-17 19:48:12.828 -07 000000610 INF: Z Motor: Moving to -0.132648 mm, started at -0.133461 mm, distance = 0.81 um
17-03-17 19:48:12.828 -07 000000610 INF: FPGA: Xmit ZDACW 28977\n [Z Motor]
17-03-17 19:48:12.828 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 19:48:12.838 -07 000000610 INF: FPGA: 'ZDACW 28977' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:48:12.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:12.838 -07 000000476 INF: FPGA: Recv ZDACR 28977
17-03-17 19:48:12.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:12.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:48:12.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:12.998 -07 000000551 INF: FPGA: Recv ZSGSRD 29941
17-03-17 19:48:13.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:13.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:13.008 -07 000000462 INF: FPGA: Recv ZSGSRD 29939
17-03-17 19:48:13.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:13.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:13.028 -07 000000551 INF: FPGA: Recv ZSGSRD 29937
17-03-17 19:48:13.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:48:13.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:13.038 -07 000000462 INF: FPGA: Recv ZSGSRD 29938
17-03-17 19:48:13.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:13.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:13.058 -07 000000551 INF: FPGA: Recv ZSGSRD 29942
17-03-17 19:48:13.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:48:13.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:13.088 -07 000000501 INF: FPGA: Recv ZSGSRD 29941
17-03-17 19:48:13.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:48:13.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:13.098 -07 000000476 INF: FPGA: Recv ZSGSRD 29934
17-03-17 19:48:13.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:13.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:13.118 -07 000000486 INF: FPGA: Recv ZSGSRD 29938
17-03-17 19:48:13.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:48:13.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:13.128 -07 000000431 INF: FPGA: Recv ZSGSRD 29937
17-03-17 19:48:13.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:13.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:13.138 -07 000000424 INF: FPGA: Recv ZSGSRD 29944
17-03-17 19:48:13.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:13.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:13.148 -07 000000561 INF: FPGA: Recv ZPIEZORD 25596
17-03-17 19:48:13.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:13.158 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.422 V. Piezo Error = -9.5 V.
17-03-17 19:48:13.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29939 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29938 (-131.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29934 (-131.8 uncal um), Max = 29944 (-131.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:48:13.158 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29939, posNoise = 5, negNoise = 5
17-03-17 19:48:13.158 -07 000000610 INF: Z Motor: After move to -0.132648, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:13.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 324 ms)
17-03-17 19:48:13.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:13.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:13.158 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:13.158 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:48:13.158 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:13.158 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:48:13.158 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:48:13.158 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:13.158 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:48:13.158 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:48:13.158 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:48:13.158 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:48:13.168 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:48:13.168 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:48:13.168 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:48:13.168 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:48:13.178 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:48:13.178 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:48:13.178 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:48:13.178 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:48:13.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 29153 150\n [Camera]
17-03-17 19:48:13.388 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:48:13.788 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:48:13.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:48:13.788 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:13.788 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:48:13.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:48:13.798 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:13.798 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:13.798 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:48:13.798 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:13.798 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:48:13.978 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29153 790
17-03-17 19:48:14.128 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:48:14.168 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:48:14.168 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:48:14.168 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:14.178 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 19:48:14.178 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:48:14.178 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:14.178 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:48:14.178 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:48:14.178 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:48:14.188 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:48:14.328 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:48:14.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:48:14.328 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:14.328 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:48:14.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:48:14.328 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:14.328 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:14.328 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:48:14.338 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:14.338 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:48:14.518 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:48:14.518 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:48:14.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 29153 150' command took 2 ms to send, 1325 ms to get response, and 1334 ms overall
17-03-17 19:48:14.518 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.133177
17-03-17 19:48:14.518 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13318 mm
17-03-17 19:48:14.518 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:48:14.518 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:48:14.518 -07 000000618 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 19:48:14.518 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:14.528 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29093, sync = True, waitForSettling = False)
17-03-17 19:48:14.528 -07 000000478 INF: Z Motor: Moving to -0.133179 mm, started at -0.132658 mm, distance = -0.52 um
17-03-17 19:48:14.528 -07 000000424 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:48:14.538 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:14.538 -07 000000618 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:14.538 -07 000000618 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:48:14.538 -07 000000618 INF: Y Motor: Moving 1339 steps-14
17-03-17 19:48:14.538 -07 000000478 INF: FPGA: Xmit ZDACW 29093\n [Z Motor]
17-03-17 19:48:14.538 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:48:14.548 -07 000000478 INF: FPGA: 'ZDACW 29093' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:48:14.548 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:48:14.558 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:14.558 -07 000000541 INF: FPGA: Recv ZDACR 29093
17-03-17 19:48:14.568 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:48:14.568 -07 000000478 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 19:48:14.708 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:48:14.708 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:48:14.708 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:14.718 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:48:14.718 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:48:14.718 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:14.718 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:14.718 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:14.718 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:48:14.718 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:48:14.918 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 19:48:14.918 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 19:48:14.958 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:14.968 -07 000000438 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:48:14.968 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:48:14.968 -07 000000618 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:14.968 -07 000000618 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 19:48:14.968 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.173 mm/sec
17-03-17 19:48:15.918 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:15.918 -07 000000424 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:48:15.928 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:15.928 -07 000000618 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:15.948 -07 000000618 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:48:15.948 -07 000000618 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:48:15.948 -07 000000618 INF: Y Motor: Moved to 63.2251 after 1423 ms (table move)
17-03-17 19:48:15.948 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133179 mm (DAC = 29093)
17-03-17 19:48:15.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:15.948 -07 000000551 INF: FPGA: Recv ZSGSRD 30011
17-03-17 19:48:15.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:48:15.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:15.958 -07 000000501 INF: FPGA: Recv ZSGSRD 30017
17-03-17 19:48:15.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:15.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:15.968 -07 000000486 INF: FPGA: Recv ZSGSRD 30013
17-03-17 19:48:15.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:15.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:15.978 -07 000000431 INF: FPGA: Recv ZSGSRD 30024
17-03-17 19:48:15.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:15.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:15.988 -07 000000429 INF: FPGA: Recv ZSGSRD 30024
17-03-17 19:48:15.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:15.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:15.998 -07 000000626 INF: FPGA: Recv ZSGSRD 30027
17-03-17 19:48:16.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:16.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:16.008 -07 000000462 INF: FPGA: Recv ZSGSRD 30027
17-03-17 19:48:16.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:16.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:16.018 -07 000000486 INF: FPGA: Recv ZSGSRD 30012
17-03-17 19:48:16.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:16.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:16.028 -07 000000476 INF: FPGA: Recv ZSGSRD 30017
17-03-17 19:48:16.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:16.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:16.038 -07 000000482 INF: FPGA: Recv ZSGSRD 30017
17-03-17 19:48:16.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:16.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:16.048 -07 000000561 INF: FPGA: Recv ZPIEZORD 25746
17-03-17 19:48:16.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:16.058 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.439 V. Piezo Error = -9.4 V.
17-03-17 19:48:16.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30019 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30017 (-132.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30011 (-132.3 uncal um), Max = 30027 (-132.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:48:16.058 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30019, posNoise = 8, negNoise = 8
17-03-17 19:48:16.058 -07 000000610 INF: Z Motor: After move to -0.133179, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:16.058 -07 000000610 INF: Z Motor: Settle wait time = 1425 ms, measure time = 105 ms (allowed 150 ms), total time = 1530 ms
17-03-17 19:48:16.058 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:48:16.108 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 19:48:16.108 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:48:16.108 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.133171776294657. ----------
17-03-17 19:48:16.108 -07 000000610 INF: Cycle	30	Tile	5	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:48:16.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28916, sync = True, waitForSettling = True)
17-03-17 19:48:16.108 -07 000000610 INF: Z Motor: Moving to -0.132369 mm, started at -0.133172 mm, distance = 0.80 um
17-03-17 19:48:16.108 -07 000000610 INF: FPGA: Xmit ZDACW 28916\n [Z Motor]
17-03-17 19:48:16.108 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:48:16.118 -07 000000610 INF: FPGA: 'ZDACW 28916' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:48:16.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:16.118 -07 000000626 INF: FPGA: Recv ZDACR 28916
17-03-17 19:48:16.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:16.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:48:16.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:16.278 -07 000000462 INF: FPGA: Recv ZSGSRD 29894
17-03-17 19:48:16.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:16.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:16.288 -07 000000478 INF: FPGA: Recv ZSGSRD 29900
17-03-17 19:48:16.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:16.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:16.298 -07 000000382 INF: FPGA: Recv ZSGSRD 29897
17-03-17 19:48:16.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:16.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:16.308 -07 000000551 INF: FPGA: Recv ZSGSRD 29900
17-03-17 19:48:16.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:16.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:16.318 -07 000000561 INF: FPGA: Recv ZSGSRD 29897
17-03-17 19:48:16.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 11 ms overall
17-03-17 19:48:16.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:16.328 -07 000000382 INF: FPGA: Recv ZSGSRD 29901
17-03-17 19:48:16.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:48:16.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:16.338 -07 000000476 INF: FPGA: Recv ZSGSRD 29894
17-03-17 19:48:16.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:16.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:16.348 -07 000000626 INF: FPGA: Recv ZSGSRD 29893
17-03-17 19:48:16.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:16.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:16.358 -07 000000431 INF: FPGA: Recv ZSGSRD 29897
17-03-17 19:48:16.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:16.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:16.368 -07 000000618 INF: FPGA: Recv ZSGSRD 29891
17-03-17 19:48:16.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:16.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:16.378 -07 000000462 INF: FPGA: Recv ZPIEZORD 25540
17-03-17 19:48:16.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:16.388 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -9.6 V.
17-03-17 19:48:16.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29896 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29897 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29891 (-131.6 uncal um), Max = 29901 (-131.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:48:16.388 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29896, posNoise = 5, negNoise = 5
17-03-17 19:48:16.388 -07 000000610 INF: Z Motor: After move to -0.132369, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:16.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:48:16.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:16.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:16.388 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:16.388 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:16.388 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:48:16.388 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:48:16.388 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:48:16.388 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:16.388 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:48:16.388 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:48:16.388 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:48:16.388 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:48:16.388 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:48:16.388 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:48:16.388 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:48:16.388 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:48:16.408 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:48:16.408 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:48:16.408 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:48:16.408 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:48:16.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 29093 150\n [Camera]
17-03-17 19:48:16.608 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:48:16.718 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:48:16.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:48:17.018 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:48:17.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:48:17.018 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:17.018 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:48:17.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:48:17.018 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:17.018 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:17.018 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 19:48:17.028 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:17.028 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:48:17.208 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29093 790
17-03-17 19:48:17.358 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-17 19:48:17.398 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 371 ms.
17-03-17 19:48:17.398 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 371 ms.
17-03-17 19:48:17.398 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:17.398 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:48:17.398 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:48:17.398 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:17.408 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:48:17.408 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:48:17.408 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:48:17.408 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:48:17.558 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:48:17.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:48:17.558 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:17.668 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:48:17.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:48:17.678 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:17.678 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:17.678 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:48:17.678 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:17.678 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:48:17.748 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:48:17.748 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:48:17.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 29093 150' command took 2 ms to send, 1324 ms to get response, and 1334 ms overall
17-03-17 19:48:17.748 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.132847
17-03-17 19:48:17.748 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13285 mm
17-03-17 19:48:17.748 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:48:17.748 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:48:17.748 -07 000000424 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 19:48:17.748 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:17.748 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 29020, sync = True, waitForSettling = False)
17-03-17 19:48:17.748 -07 000000593 INF: Z Motor: Moving to -0.132845 mm, started at -0.132382 mm, distance = -0.46 um
17-03-17 19:48:17.758 -07 000000593 INF: FPGA: Xmit ZDACW 29020\n [Z Motor]
17-03-17 19:48:17.758 -07 000000431 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:48:17.758 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 19:48:17.758 -07 000000424 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:17.758 -07 000000424 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:48:17.758 -07 000000424 INF: Y Motor: Moving 1340 steps-15
17-03-17 19:48:17.758 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:48:17.768 -07 000000593 INF: FPGA: 'ZDACW 29020' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:17.768 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:17.768 -07 000000626 INF: FPGA: Recv ZDACR 29020
17-03-17 19:48:17.778 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:48:17.778 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:17.778 -07 000000593 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 19:48:17.798 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.981281,
17-03-17 19:48:18.058 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:48:18.058 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:48:18.058 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:18.058 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:48:18.058 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:48:18.058 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:18.058 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:48:18.068 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:48:18.068 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-17 19:48:18.068 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:48:18.148 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 19:48:18.148 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 19:48:18.188 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:18.188 -07 000000551 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:48:18.198 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:48:18.198 -07 000000424 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:18.198 -07 000000424 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 19:48:18.198 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.838 mm, average velocity = 2.115 mm/sec
17-03-17 19:48:19.148 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:19.148 -07 000000593 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:48:19.158 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:19.158 -07 000000424 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:19.168 -07 000000424 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:48:19.168 -07 000000424 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:48:19.168 -07 000000424 INF: Y Motor: Moved to 64.0576 after 1417 ms (table move)
17-03-17 19:48:19.168 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132845 mm (DAC = 29020)
17-03-17 19:48:19.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.178 -07 000000476 INF: FPGA: Recv ZSGSRD 29966
17-03-17 19:48:19.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 19:48:19.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.178 -07 000000486 INF: FPGA: Recv ZSGSRD 29973
17-03-17 19:48:19.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:48:19.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.188 -07 000000382 INF: FPGA: Recv ZSGSRD 29958
17-03-17 19:48:19.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.198 -07 000000551 INF: FPGA: Recv ZSGSRD 29966
17-03-17 19:48:19.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.208 -07 000000547 INF: FPGA: Recv ZSGSRD 29974
17-03-17 19:48:19.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.218 -07 000000593 INF: FPGA: Recv ZSGSRD 29979
17-03-17 19:48:19.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.228 -07 000000486 INF: FPGA: Recv ZSGSRD 29972
17-03-17 19:48:19.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.238 -07 000000462 INF: FPGA: Recv ZSGSRD 29973
17-03-17 19:48:19.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.248 -07 000000431 INF: FPGA: Recv ZSGSRD 29969
17-03-17 19:48:19.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:19.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.258 -07 000000547 INF: FPGA: Recv ZSGSRD 29966
17-03-17 19:48:19.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:19.268 -07 000000593 INF: FPGA: Recv ZPIEZORD 25716
17-03-17 19:48:19.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.278 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.428 V. Piezo Error = -9.3 V.
17-03-17 19:48:19.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29970 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29970 (-132.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 29958 (-132.0 uncal um), Max = 29979 (-132.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 19:48:19.278 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29970, posNoise = 9, negNoise = 12
17-03-17 19:48:19.278 -07 000000610 INF: Z Motor: After move to -0.132845, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:19.278 -07 000000610 INF: Z Motor: Settle wait time = 1419 ms, measure time = 102 ms (allowed 150 ms), total time = 1521 ms
17-03-17 19:48:19.278 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 19:48:19.328 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 19:48:19.328 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:48:19.328 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.132856989899711. ----------
17-03-17 19:48:19.328 -07 000000610 INF: Cycle	30	Tile	6	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:48:19.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28844, sync = True, waitForSettling = True)
17-03-17 19:48:19.328 -07 000000610 INF: Z Motor: Moving to -0.132039 mm, started at -0.132857 mm, distance = 0.82 um
17-03-17 19:48:19.328 -07 000000610 INF: FPGA: Xmit ZDACW 28844\n [Z Motor]
17-03-17 19:48:19.328 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:48:19.338 -07 000000610 INF: FPGA: 'ZDACW 28844' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:48:19.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:19.338 -07 000000382 INF: FPGA: Recv ZDACR 28844
17-03-17 19:48:19.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:48:19.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.498 -07 000000626 INF: FPGA: Recv ZSGSRD 29837
17-03-17 19:48:19.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:19.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.508 -07 000000482 INF: FPGA: Recv ZSGSRD 29850
17-03-17 19:48:19.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.518 -07 000000551 INF: FPGA: Recv ZSGSRD 29849
17-03-17 19:48:19.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.528 -07 000000618 INF: FPGA: Recv ZSGSRD 29842
17-03-17 19:48:19.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.538 -07 000000382 INF: FPGA: Recv ZSGSRD 29849
17-03-17 19:48:19.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.548 -07 000000569 INF: FPGA: Recv ZSGSRD 29847
17-03-17 19:48:19.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.558 -07 000000482 INF: FPGA: Recv ZSGSRD 29840
17-03-17 19:48:19.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.568 -07 000000462 INF: FPGA: Recv ZSGSRD 29843
17-03-17 19:48:19.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.578 -07 000000561 INF: FPGA: Recv ZSGSRD 29837
17-03-17 19:48:19.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:19.588 -07 000000382 INF: FPGA: Recv ZSGSRD 29846
17-03-17 19:48:19.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:19.598 -07 000000501 INF: FPGA: Recv ZPIEZORD 25538
17-03-17 19:48:19.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:19.608 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -9.5 V.
17-03-17 19:48:19.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29844 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29844 (-131.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29837 (-131.2 uncal um), Max = 29850 (-131.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:48:19.608 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29844, posNoise = 6, negNoise = 7
17-03-17 19:48:19.608 -07 000000610 INF: Z Motor: After move to -0.132039, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:19.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:48:19.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:19.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:19.608 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:19.608 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:19.608 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:48:19.608 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:19.608 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:48:19.608 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:48:19.608 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:48:19.608 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:48:19.608 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:48:19.608 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:48:19.618 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:48:19.618 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:48:19.618 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:48:19.618 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:48:19.628 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:48:19.628 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:48:19.628 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:48:19.628 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:48:19.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 29020 150\n [Camera]
17-03-17 19:48:19.828 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:48:20.238 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:48:20.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:48:20.238 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:20.238 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:48:20.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:48:20.238 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:20.238 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:48:20.238 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:20.248 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:20.248 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:48:20.428 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29020 790
17-03-17 19:48:20.578 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:48:20.628 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:48:20.628 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:48:20.628 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:20.638 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:20.638 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:48:20.638 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 19:48:20.638 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:48:20.638 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:20.638 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:48:20.648 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:48:20.768 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:48:20.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:48:20.768 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:20.878 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:48:20.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:48:20.878 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:20.888 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:20.888 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:48:20.888 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:20.888 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:48:20.958 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:48:20.968 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:48:20.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 29020 150' command took 2 ms to send, 1330 ms to get response, and 1335 ms overall
17-03-17 19:48:20.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:48:20.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.132047539169849. ------
17-03-17 19:48:20.968 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13863 mm
17-03-17 19:48:20.968 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:48:20.978 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:48:20.978 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:48:20.978 -07 000000486 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 19:48:20.978 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30283, sync = True, waitForSettling = False)
17-03-17 19:48:20.978 -07 000000429 INF: Z Motor: Moving to -0.138627 mm, started at -0.132048 mm, distance = -6.58 um
17-03-17 19:48:20.978 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:48:20.988 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:48:20.988 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:20.988 -07 000000431 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:48:20.998 -07 000000429 INF: FPGA: Xmit ZDACW 30283\n [Z Motor]
17-03-17 19:48:20.998 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:48:20.998 -07 000000486 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:20.998 -07 000000486 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:48:20.998 -07 000000486 INF: Y Motor: Moving 1336 steps-10
17-03-17 19:48:20.998 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:48:21.008 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:48:21.008 -07 000000429 INF: FPGA: 'ZDACW 30283' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:48:21.018 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:48:21.028 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:21.028 -07 000000431 INF: FPGA: Recv ZDACR 30283
17-03-17 19:48:21.038 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:48:21.038 -07 000000429 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 19:48:21.208 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:48:21.208 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 19:48:21.258 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:48:21.258 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:48:21.258 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:21.268 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:48:21.268 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:48:21.268 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:21.268 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:48:21.268 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:21.268 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 496 ms.
17-03-17 19:48:21.268 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:48:21.388 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 19:48:21.388 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:48:21.428 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:21.428 -07 000000462 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:48:21.438 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:48:21.438 -07 000000486 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:21.438 -07 000000486 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:48:21.438 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.835 mm, average velocity = 2.119 mm/sec
17-03-17 19:48:21.718 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:48:21.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:48:22.388 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:22.388 -07 000000429 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:48:22.398 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:22.398 -07 000000486 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:22.418 -07 000000486 INF: Y Motor: After move to 64.892609, error = -0.012726, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:48:22.418 -07 000000486 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:48:22.418 -07 000000486 INF: Y Motor: Moved to 64.8799 after 1438 ms (table move)
17-03-17 19:48:22.418 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138627 mm (DAC = 30283)
17-03-17 19:48:22.418 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:22.418 -07 000000462 INF: FPGA: Recv ZSGSRD 30877
17-03-17 19:48:22.428 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:48:22.428 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:22.428 -07 000000382 INF: FPGA: Recv ZSGSRD 30870
17-03-17 19:48:22.438 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:22.438 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:22.438 -07 000000618 INF: FPGA: Recv ZSGSRD 30865
17-03-17 19:48:22.448 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:22.448 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:22.448 -07 000000476 INF: FPGA: Recv ZSGSRD 30871
17-03-17 19:48:22.458 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:22.458 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:22.458 -07 000000626 INF: FPGA: Recv ZSGSRD 30873
17-03-17 19:48:22.468 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:22.468 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:22.468 -07 000000551 INF: FPGA: Recv ZSGSRD 30874
17-03-17 19:48:22.478 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:22.478 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:22.478 -07 000000382 INF: FPGA: Recv ZSGSRD 30873
17-03-17 19:48:22.488 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:22.488 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:22.488 -07 000000618 INF: FPGA: Recv ZSGSRD 30872
17-03-17 19:48:22.498 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:22.498 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:22.498 -07 000000438 INF: FPGA: Recv ZSGSRD 30866
17-03-17 19:48:22.508 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:22.508 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:22.508 -07 000000486 INF: FPGA: Recv ZSGSRD 30866
17-03-17 19:48:22.518 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:22.518 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:22.518 -07 000000429 INF: FPGA: Recv ZPIEZORD 26845
17-03-17 19:48:22.528 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:22.528 -07 000000424 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.621 V. Piezo Error = -8.9 V.
17-03-17 19:48:22.528 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30871 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30872 (-137.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30865 (-137.8 uncal um), Max = 30877 (-137.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:48:22.528 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30871, posNoise = 6, negNoise = 6
17-03-17 19:48:22.528 -07 000000424 INF: Z Motor: After move to -0.138627, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:22.528 -07 000000424 INF: Z Motor: Settle wait time = 1441 ms, measure time = 105 ms (allowed 150 ms), total time = 1546 ms
17-03-17 19:48:22.528 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:48:22.578 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 19:48:22.578 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:48:22.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:22.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:22.578 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:22.578 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:48:22.578 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:22.578 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:22.578 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:48:22.578 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:48:22.588 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:48:22.588 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:48:22.598 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:48:22.598 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:48:22.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:48:22.648 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:48:22.848 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:48:22.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:48:22.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:48:22.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 19:48:22.878 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:48:22.888 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 19:48:22.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:48:22.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:48:22.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:22.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:48:22.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:48:22.988 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:48:22.988 -07 000000476 INF: Autofocus start
17-03-17 19:48:22.988 -07 000000476 INF: MeasureProfile start
17-03-17 19:48:22.988 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:48:22.998 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:48:22.998 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:48:22.998 -07 000000476 INF: MeasureProfile done
17-03-17 19:48:22.998 -07 000000476 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 19:48:22.998 -07 000000476 INF: Autofocus finished
17-03-17 19:48:23.158 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.001704,
17-03-17 19:48:23.198 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:48:23.198 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:48:23.198 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8798828125, Z-position -0.138645205039438. ----------
17-03-17 19:48:23.198 -07 000000610 INF: Cycle	30	Tile	7	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:48:23.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28778, sync = True, waitForSettling = True)
17-03-17 19:48:23.208 -07 000000610 INF: Z Motor: Moving to -0.131737 mm, started at -0.138645 mm, distance = 6.91 um
17-03-17 19:48:23.208 -07 000000610 INF: FPGA: Xmit ZDACW 28778\n [Z Motor]
17-03-17 19:48:23.208 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:48:23.218 -07 000000610 INF: FPGA: 'ZDACW 28778' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:48:23.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:23.218 -07 000000626 INF: FPGA: Recv ZDACR 28778
17-03-17 19:48:23.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:23.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:48:23.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:23.378 -07 000000462 INF: FPGA: Recv ZSGSRD 29794
17-03-17 19:48:23.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:23.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:23.388 -07 000000382 INF: FPGA: Recv ZSGSRD 29795
17-03-17 19:48:23.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:23.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:23.398 -07 000000482 INF: FPGA: Recv ZSGSRD 29799
17-03-17 19:48:23.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:23.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:23.408 -07 000000438 INF: FPGA: Recv ZSGSRD 29790
17-03-17 19:48:23.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:23.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:23.418 -07 000000478 INF: FPGA: Recv ZSGSRD 29801
17-03-17 19:48:23.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:23.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:23.428 -07 000000476 INF: FPGA: Recv ZSGSRD 29796
17-03-17 19:48:23.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:23.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:23.438 -07 000000431 INF: FPGA: Recv ZSGSRD 29801
17-03-17 19:48:23.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:23.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:23.448 -07 000000482 INF: FPGA: Recv ZSGSRD 29801
17-03-17 19:48:23.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:23.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:23.458 -07 000000424 INF: FPGA: Recv ZSGSRD 29794
17-03-17 19:48:23.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:23.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:23.468 -07 000000593 INF: FPGA: Recv ZSGSRD 29799
17-03-17 19:48:23.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:23.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:23.488 -07 000000482 INF: FPGA: Recv ZPIEZORD 25427
17-03-17 19:48:23.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:48:23.498 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.391 V. Piezo Error = -9.6 V.
17-03-17 19:48:23.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29797 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29798 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29790 (-130.9 uncal um), Max = 29801 (-131.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:48:23.498 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29797, posNoise = 4, negNoise = 7
17-03-17 19:48:23.498 -07 000000610 INF: Z Motor: After move to -0.131737, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:23.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 19:48:23.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:23.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:23.498 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:23.498 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:23.498 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:48:23.498 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:23.498 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:48:23.498 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:48:23.498 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:48:23.498 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:48:23.498 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:48:23.498 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:48:23.508 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:48:23.508 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:48:23.508 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:48:23.508 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:48:23.518 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:48:23.518 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:48:23.518 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:48:23.518 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:48:23.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 28954 150\n [Camera]
17-03-17 19:48:23.718 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:48:24.128 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:48:24.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:48:24.128 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:24.128 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:48:24.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:48:24.128 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:24.128 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:24.138 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) start.
17-03-17 19:48:24.138 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:24.138 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) start.
17-03-17 19:48:24.318 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28954 790
17-03-17 19:48:24.468 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:48:24.508 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 19:48:24.508 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 19:48:24.508 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:24.508 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1443674384, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 19:48:24.508 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 19:48:24.508 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:24.508 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:48:24.508 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:48:24.508 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:48:24.518 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:48:24.668 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:48:24.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:48:24.668 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:24.668 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:24.668 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:48:24.668 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:48:24.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:48:24.668 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:24.668 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:24.668 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) start.
17-03-17 19:48:24.858 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:48:24.858 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:48:24.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 28954 150' command took 2 ms to send, 1323 ms to get response, and 1334 ms overall
17-03-17 19:48:24.858 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.132321
17-03-17 19:48:24.858 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13232 mm
17-03-17 19:48:24.858 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:48:24.858 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:48:25.008 -07 000000593 INF: Y Motor: Moving to 65.7226 mm, started at 64.8799 mm, delta = 0.8427 mm
17-03-17 19:48:25.018 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:25.018 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 28906, sync = True, waitForSettling = False)
17-03-17 19:48:25.018 -07 000000618 INF: Z Motor: Moving to -0.132323 mm, started at -0.131746 mm, distance = -0.58 um
17-03-17 19:48:25.018 -07 000000501 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:48:25.028 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:25.028 -07 000000593 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:25.028 -07 000000593 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:48:25.028 -07 000000593 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:48:25.028 -07 000000618 INF: FPGA: Xmit ZDACW 28906\n [Z Motor]
17-03-17 19:48:25.028 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:48:25.038 -07 000000618 INF: FPGA: 'ZDACW 28906' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:48:25.038 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:25.038 -07 000000462 INF: FPGA: Recv ZDACR 28906
17-03-17 19:48:25.048 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:48:25.048 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:25.048 -07 000000618 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 19:48:25.058 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:48:25.058 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:48:25.058 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:25.068 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:48:25.068 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:48:25.078 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1124568280, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 19:48:25.078 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 19:48:25.078 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:25.078 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:25.088 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 19:48:25.418 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 19:48:25.418 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:48:25.458 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:25.468 -07 000000431 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:48:25.468 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:48:25.468 -07 000000593 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:25.468 -07 000000593 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:48:25.468 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 19:48:26.418 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:26.418 -07 000000382 INF: FPGA: Recv YRDPOS 134585
17-03-17 19:48:26.428 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.428 -07 000000593 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:26.448 -07 000000593 INF: Y Motor: After move to 65.722610, error = -0.007278, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:48:26.448 -07 000000593 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:48:26.448 -07 000000593 INF: Y Motor: Moved to 65.7153 after 1430 ms (table move)
17-03-17 19:48:26.448 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132323 mm (DAC = 28906)
17-03-17 19:48:26.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.448 -07 000000431 INF: FPGA: Recv ZSGSRD 29887
17-03-17 19:48:26.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:48:26.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.458 -07 000000486 INF: FPGA: Recv ZSGSRD 29884
17-03-17 19:48:26.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.468 -07 000000541 INF: FPGA: Recv ZSGSRD 29885
17-03-17 19:48:26.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.478 -07 000000424 INF: FPGA: Recv ZSGSRD 29892
17-03-17 19:48:26.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.488 -07 000000429 INF: FPGA: Recv ZSGSRD 29880
17-03-17 19:48:26.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.498 -07 000000482 INF: FPGA: Recv ZSGSRD 29889
17-03-17 19:48:26.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.508 -07 000000438 INF: FPGA: Recv ZSGSRD 29891
17-03-17 19:48:26.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.518 -07 000000462 INF: FPGA: Recv ZSGSRD 29883
17-03-17 19:48:26.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.528 -07 000000547 INF: FPGA: Recv ZSGSRD 29882
17-03-17 19:48:26.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.538 -07 000000626 INF: FPGA: Recv ZSGSRD 29888
17-03-17 19:48:26.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:26.548 -07 000000593 INF: FPGA: Recv ZPIEZORD 25586
17-03-17 19:48:26.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.558 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.411 V. Piezo Error = -9.4 V.
17-03-17 19:48:26.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29886 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29886 (-131.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29880 (-131.5 uncal um), Max = 29892 (-131.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:48:26.558 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29886, posNoise = 6, negNoise = 6
17-03-17 19:48:26.558 -07 000000610 INF: Z Motor: After move to -0.132323, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:26.558 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 108 ms (allowed 150 ms), total time = 1540 ms
17-03-17 19:48:26.558 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:48:26.608 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1744 ms
17-03-17 19:48:26.608 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:48:26.608 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71533203125, Z-position -0.132317356079803. ----------
17-03-17 19:48:26.608 -07 000000610 INF: Cycle	30	Tile	8	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:48:26.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28729, sync = True, waitForSettling = True)
17-03-17 19:48:26.608 -07 000000610 INF: Z Motor: Moving to -0.131513 mm, started at -0.132317 mm, distance = 0.80 um
17-03-17 19:48:26.608 -07 000000610 INF: FPGA: Xmit ZDACW 28729\n [Z Motor]
17-03-17 19:48:26.608 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:48:26.618 -07 000000610 INF: FPGA: 'ZDACW 28729' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:48:26.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:26.618 -07 000000593 INF: FPGA: Recv ZDACR 28729
17-03-17 19:48:26.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:48:26.718 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:48:26.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:48:26.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.778 -07 000000626 INF: FPGA: Recv ZSGSRD 29762
17-03-17 19:48:26.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:26.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.788 -07 000000438 INF: FPGA: Recv ZSGSRD 29759
17-03-17 19:48:26.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:48:26.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.798 -07 000000424 INF: FPGA: Recv ZSGSRD 29763
17-03-17 19:48:26.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.808 -07 000000462 INF: FPGA: Recv ZSGSRD 29759
17-03-17 19:48:26.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.818 -07 000000431 INF: FPGA: Recv ZSGSRD 29761
17-03-17 19:48:26.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.828 -07 000000429 INF: FPGA: Recv ZSGSRD 29761
17-03-17 19:48:26.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.838 -07 000000438 INF: FPGA: Recv ZSGSRD 29762
17-03-17 19:48:26.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.848 -07 000000424 INF: FPGA: Recv ZSGSRD 29760
17-03-17 19:48:26.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.858 -07 000000462 INF: FPGA: Recv ZSGSRD 29756
17-03-17 19:48:26.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:26.868 -07 000000431 INF: FPGA: Recv ZSGSRD 29762
17-03-17 19:48:26.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:26.878 -07 000000429 INF: FPGA: Recv ZPIEZORD 25448
17-03-17 19:48:26.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:26.888 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.384 V. Piezo Error = -9.5 V.
17-03-17 19:48:26.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29760 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29761 (-130.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29756 (-130.7 uncal um), Max = 29763 (-130.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:48:26.888 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29760, posNoise = 3, negNoise = 4
17-03-17 19:48:26.888 -07 000000610 INF: Z Motor: After move to -0.131513, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:26.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:48:26.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:26.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:26.888 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:26.888 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:48:26.888 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:48:26.888 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:26.888 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:48:26.888 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:48:26.888 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:48:26.888 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:26.888 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:48:26.888 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:48:26.898 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:48:26.898 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:48:26.898 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:48:26.898 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:48:26.908 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:48:26.908 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:48:26.908 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:48:26.908 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:48:26.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 28906 150\n [Camera]
17-03-17 19:48:27.108 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:48:27.518 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:48:27.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:48:27.518 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:27.518 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:48:27.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:48:27.518 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:27.518 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:27.518 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:48:27.528 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:27.528 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:48:27.708 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28906 790
17-03-17 19:48:27.858 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:48:27.898 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:48:27.898 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:48:27.898 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:27.898 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:48:27.898 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:48:27.898 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:27.898 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:27.898 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:48:27.908 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:27.908 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:48:28.048 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:48:28.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:48:28.048 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:28.048 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:28.058 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:48:28.058 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:48:28.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:48:28.058 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:28.058 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:28.058 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:48:28.238 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:48:28.248 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:48:28.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 28906 150' command took 2 ms to send, 1330 ms to get response, and 1334 ms overall
17-03-17 19:48:28.248 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.131817
17-03-17 19:48:28.248 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13182 mm
17-03-17 19:48:28.248 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:48:28.248 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:48:28.248 -07 000000541 INF: Y Motor: Moving to 66.5526 mm, started at 65.7153 mm, delta = 0.8373 mm
17-03-17 19:48:28.248 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 28795, sync = True, waitForSettling = False)
17-03-17 19:48:28.248 -07 000000547 INF: Z Motor: Moving to -0.131815 mm, started at -0.131508 mm, distance = -0.31 um
17-03-17 19:48:28.248 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:28.248 -07 000000561 INF: FPGA: Recv YRDPOS 134585
17-03-17 19:48:28.258 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:48:28.258 -07 000000541 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:28.258 -07 000000541 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:48:28.258 -07 000000541 INF: Y Motor: Moving 1340 steps-16
17-03-17 19:48:28.258 -07 000000547 INF: FPGA: Xmit ZDACW 28795\n [Z Motor]
17-03-17 19:48:28.258 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:48:28.268 -07 000000547 INF: FPGA: 'ZDACW 28795' command took 1 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:48:28.268 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:28.268 -07 000000424 INF: FPGA: Recv ZDACR 28795
17-03-17 19:48:28.278 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:28.278 -07 000000547 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 19:48:28.278 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:48:28.428 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:48:28.428 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:48:28.438 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:28.438 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:48:28.438 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:48:28.438 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:28.438 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:28.438 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:48:28.438 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:28.448 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:48:28.518 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.999021,
17-03-17 19:48:28.648 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 19:48:28.648 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 19:48:28.688 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:28.688 -07 000000618 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:48:28.698 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:48:28.698 -07 000000541 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:28.698 -07 000000541 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:48:28.698 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.104 mm/sec
17-03-17 19:48:29.648 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:29.648 -07 000000547 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:48:29.658 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:29.658 -07 000000541 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:29.678 -07 000000541 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:48:29.678 -07 000000541 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:48:29.678 -07 000000541 INF: Y Motor: Moved to 66.5400 after 1428 ms (table move)
17-03-17 19:48:29.678 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131815 mm (DAC = 28795)
17-03-17 19:48:29.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:29.678 -07 000000618 INF: FPGA: Recv ZSGSRD 29805
17-03-17 19:48:29.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:48:29.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:29.688 -07 000000476 INF: FPGA: Recv ZSGSRD 29810
17-03-17 19:48:29.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:29.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:29.698 -07 000000551 INF: FPGA: Recv ZSGSRD 29808
17-03-17 19:48:29.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:29.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:29.708 -07 000000626 INF: FPGA: Recv ZSGSRD 29813
17-03-17 19:48:29.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:29.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:29.718 -07 000000478 INF: FPGA: Recv ZSGSRD 29812
17-03-17 19:48:29.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:29.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:29.728 -07 000000593 INF: FPGA: Recv ZSGSRD 29815
17-03-17 19:48:29.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:29.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:29.738 -07 000000476 INF: FPGA: Recv ZSGSRD 29807
17-03-17 19:48:29.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:29.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:29.748 -07 000000551 INF: FPGA: Recv ZSGSRD 29804
17-03-17 19:48:29.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:29.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:29.758 -07 000000593 INF: FPGA: Recv ZSGSRD 29799
17-03-17 19:48:29.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:29.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:29.768 -07 000000626 INF: FPGA: Recv ZSGSRD 29808
17-03-17 19:48:29.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:29.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:29.778 -07 000000462 INF: FPGA: Recv ZPIEZORD 25507
17-03-17 19:48:29.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:29.788 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.394 V. Piezo Error = -9.4 V.
17-03-17 19:48:29.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29808 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29808 (-131.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29799 (-131.0 uncal um), Max = 29815 (-131.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:48:29.788 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29808, posNoise = 7, negNoise = 9
17-03-17 19:48:29.788 -07 000000610 INF: Z Motor: After move to -0.131815, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:29.788 -07 000000610 INF: Z Motor: Settle wait time = 1430 ms, measure time = 105 ms (allowed 150 ms), total time = 1535 ms
17-03-17 19:48:29.788 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:48:29.838 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 19:48:29.838 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:48:29.838 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.131816267532746. ----------
17-03-17 19:48:29.838 -07 000000610 INF: Cycle	30	Tile	9	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:48:29.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28619, sync = True, waitForSettling = True)
17-03-17 19:48:29.838 -07 000000610 INF: Z Motor: Moving to -0.131009 mm, started at -0.131816 mm, distance = 0.81 um
17-03-17 19:48:29.838 -07 000000610 INF: FPGA: Xmit ZDACW 28619\n [Z Motor]
17-03-17 19:48:29.838 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:48:29.848 -07 000000610 INF: FPGA: 'ZDACW 28619' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:48:29.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:29.848 -07 000000478 INF: FPGA: Recv ZDACR 28619
17-03-17 19:48:29.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:29.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:48:30.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:30.008 -07 000000438 INF: FPGA: Recv ZSGSRD 29681
17-03-17 19:48:30.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:30.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:30.018 -07 000000547 INF: FPGA: Recv ZSGSRD 29686
17-03-17 19:48:30.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:30.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:30.028 -07 000000462 INF: FPGA: Recv ZSGSRD 29691
17-03-17 19:48:30.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:30.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:30.038 -07 000000561 INF: FPGA: Recv ZSGSRD 29681
17-03-17 19:48:30.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:30.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:30.048 -07 000000478 INF: FPGA: Recv ZSGSRD 29683
17-03-17 19:48:30.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:30.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:30.058 -07 000000382 INF: FPGA: Recv ZSGSRD 29683
17-03-17 19:48:30.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:30.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:30.068 -07 000000501 INF: FPGA: Recv ZSGSRD 29679
17-03-17 19:48:30.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:30.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:30.078 -07 000000476 INF: FPGA: Recv ZSGSRD 29683
17-03-17 19:48:30.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:30.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:30.088 -07 000000561 INF: FPGA: Recv ZSGSRD 29678
17-03-17 19:48:30.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:30.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:30.098 -07 000000478 INF: FPGA: Recv ZSGSRD 29692
17-03-17 19:48:30.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:30.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:30.108 -07 000000462 INF: FPGA: Recv ZPIEZORD 25329
17-03-17 19:48:30.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:30.118 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -9.6 V.
17-03-17 19:48:30.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29684 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29683 (-130.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29678 (-130.2 uncal um), Max = 29692 (-130.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:48:30.118 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29684, posNoise = 8, negNoise = 6
17-03-17 19:48:30.118 -07 000000610 INF: Z Motor: After move to -0.131009, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:30.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:48:30.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:30.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:30.118 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:30.118 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:30.118 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:48:30.118 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:30.118 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:48:30.118 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:48:30.118 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:48:30.118 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:48:30.118 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:48:30.118 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:48:30.128 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:48:30.128 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:48:30.128 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:48:30.128 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:48:30.138 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:48:30.138 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:48:30.138 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:48:30.138 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:48:30.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 28795 150\n [Camera]
17-03-17 19:48:30.348 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:48:30.748 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:48:30.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:48:30.748 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:30.748 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:30.748 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:48:30.748 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:48:30.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:48:30.748 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:30.748 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:30.748 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:48:30.938 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28795 790
17-03-17 19:48:31.088 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-17 19:48:31.128 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:48:31.128 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:48:31.128 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:31.138 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:48:31.138 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:48:31.138 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:31.138 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:31.138 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:48:31.138 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:31.148 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:48:31.288 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:48:31.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:48:31.288 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:31.288 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:31.288 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:48:31.288 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:48:31.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:48:31.288 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:31.288 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:31.288 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:48:31.478 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:48:31.478 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:48:31.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 28795 150' command took 2 ms to send, 1325 ms to get response, and 1334 ms overall
17-03-17 19:48:31.478 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.131818
17-03-17 19:48:31.478 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13182 mm
17-03-17 19:48:31.478 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:48:31.488 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:48:31.488 -07 000000486 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 19:48:31.488 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:31.488 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 28796, sync = True, waitForSettling = False)
17-03-17 19:48:31.488 -07 000000478 INF: Z Motor: Moving to -0.131820 mm, started at -0.131020 mm, distance = -0.80 um
17-03-17 19:48:31.488 -07 000000438 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:48:31.498 -07 000000478 INF: FPGA: Xmit ZDACW 28796\n [Z Motor]
17-03-17 19:48:31.498 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:48:31.498 -07 000000486 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:31.498 -07 000000486 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:48:31.498 -07 000000486 INF: Y Motor: Moving 1348 steps-26
17-03-17 19:48:31.498 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:48:31.508 -07 000000478 INF: FPGA: 'ZDACW 28796' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:48:31.508 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:31.508 -07 000000482 INF: FPGA: Recv ZDACR 28796
17-03-17 19:48:31.518 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:48:31.518 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:31.518 -07 000000478 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-17 19:48:31.668 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:48:31.668 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:48:31.668 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:31.668 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:48:31.668 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:48:31.668 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:31.668 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:31.668 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:48:31.678 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:31.678 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:48:31.718 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:48:31.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:48:31.888 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 19:48:31.888 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:48:31.928 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:31.928 -07 000000551 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:48:31.938 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:48:31.938 -07 000000486 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:31.938 -07 000000486 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 19:48:31.938 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 19:48:32.888 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:32.888 -07 000000541 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:48:32.898 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:32.898 -07 000000486 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:32.918 -07 000000486 INF: Y Motor: After move to 67.382607, error = -0.009560, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:48:32.918 -07 000000486 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:48:32.918 -07 000000486 INF: Y Motor: Moved to 67.3730 after 1431 ms (table move)
17-03-17 19:48:32.918 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131820 mm (DAC = 28796)
17-03-17 19:48:32.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:32.918 -07 000000547 INF: FPGA: Recv ZSGSRD 29806
17-03-17 19:48:32.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:48:32.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:32.928 -07 000000626 INF: FPGA: Recv ZSGSRD 29808
17-03-17 19:48:32.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:32.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:32.938 -07 000000593 INF: FPGA: Recv ZSGSRD 29804
17-03-17 19:48:32.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:32.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:32.948 -07 000000618 INF: FPGA: Recv ZSGSRD 29809
17-03-17 19:48:32.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:32.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:32.958 -07 000000486 INF: FPGA: Recv ZSGSRD 29818
17-03-17 19:48:32.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:32.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:32.968 -07 000000462 INF: FPGA: Recv ZSGSRD 29815
17-03-17 19:48:32.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:32.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:32.978 -07 000000429 INF: FPGA: Recv ZSGSRD 29813
17-03-17 19:48:32.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:32.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:32.988 -07 000000382 INF: FPGA: Recv ZSGSRD 29807
17-03-17 19:48:32.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:32.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:32.998 -07 000000431 INF: FPGA: Recv ZSGSRD 29802
17-03-17 19:48:33.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:33.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:33.008 -07 000000626 INF: FPGA: Recv ZSGSRD 29810
17-03-17 19:48:33.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:33.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:33.018 -07 000000593 INF: FPGA: Recv ZPIEZORD 25557
17-03-17 19:48:33.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:33.028 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.394 V. Piezo Error = -9.3 V.
17-03-17 19:48:33.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29809 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29808 (-131.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29802 (-131.0 uncal um), Max = 29818 (-131.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:48:33.028 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29809, posNoise = 9, negNoise = 7
17-03-17 19:48:33.028 -07 000000610 INF: Z Motor: After move to -0.131820, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:33.028 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 104 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:48:33.028 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:48:33.078 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 19:48:33.078 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:48:33.078 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.373046875, Z-position -0.131822691744887. ----------
17-03-17 19:48:33.078 -07 000000610 INF: Cycle	30	Tile	10	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:48:33.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28619, sync = True, waitForSettling = True)
17-03-17 19:48:33.078 -07 000000610 INF: Z Motor: Moving to -0.131009 mm, started at -0.131823 mm, distance = 0.81 um
17-03-17 19:48:33.078 -07 000000610 INF: FPGA: Xmit ZDACW 28619\n [Z Motor]
17-03-17 19:48:33.078 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:48:33.088 -07 000000610 INF: FPGA: 'ZDACW 28619' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:48:33.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:33.088 -07 000000626 INF: FPGA: Recv ZDACR 28619
17-03-17 19:48:33.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:33.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:48:33.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:33.248 -07 000000382 INF: FPGA: Recv ZSGSRD 29683
17-03-17 19:48:33.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:33.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:33.258 -07 000000482 INF: FPGA: Recv ZSGSRD 29689
17-03-17 19:48:33.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:33.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:33.268 -07 000000569 INF: FPGA: Recv ZSGSRD 29688
17-03-17 19:48:33.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:33.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:33.278 -07 000000431 INF: FPGA: Recv ZSGSRD 29681
17-03-17 19:48:33.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:33.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:33.288 -07 000000626 INF: FPGA: Recv ZSGSRD 29686
17-03-17 19:48:33.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:33.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:33.298 -07 000000618 INF: FPGA: Recv ZSGSRD 29684
17-03-17 19:48:33.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:33.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:33.308 -07 000000486 INF: FPGA: Recv ZSGSRD 29688
17-03-17 19:48:33.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:33.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:33.318 -07 000000438 INF: FPGA: Recv ZSGSRD 29680
17-03-17 19:48:33.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:33.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:33.328 -07 000000561 INF: FPGA: Recv ZSGSRD 29682
17-03-17 19:48:33.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:33.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:33.338 -07 000000482 INF: FPGA: Recv ZSGSRD 29689
17-03-17 19:48:33.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:33.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:33.348 -07 000000618 INF: FPGA: Recv ZPIEZORD 25373
17-03-17 19:48:33.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:33.358 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -9.5 V.
17-03-17 19:48:33.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29685 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29685 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29680 (-130.2 uncal um), Max = 29689 (-130.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:48:33.358 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29685, posNoise = 4, negNoise = 5
17-03-17 19:48:33.358 -07 000000610 INF: Z Motor: After move to -0.131009, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:33.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:48:33.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:33.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:33.358 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:33.358 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:48:33.358 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:33.358 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:33.358 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:48:33.358 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:48:33.358 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:48:33.358 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:48:33.358 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:48:33.358 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:48:33.358 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:48:33.358 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:48:33.368 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:48:33.368 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:48:33.378 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:48:33.378 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:48:33.378 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:48:33.378 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:48:33.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 28796 150\n [Camera]
17-03-17 19:48:33.578 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:48:33.878 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.986717,
17-03-17 19:48:33.988 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:48:33.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:48:33.988 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:33.988 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:33.988 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:48:33.988 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:48:33.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:48:33.988 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:33.988 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:33.988 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:48:34.178 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28796 790
17-03-17 19:48:34.328 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:48:34.368 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:48:34.368 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:48:34.368 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:34.368 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:34.368 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:48:34.368 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:48:34.368 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:34.368 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:48:34.368 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:34.378 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:48:34.518 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:48:34.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:48:34.528 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:34.528 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:48:34.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:48:34.528 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:34.528 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:34.528 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:48:34.528 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:34.528 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:48:34.718 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:48:34.718 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:48:34.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 28796 150' command took 2 ms to send, 1332 ms to get response, and 1334 ms overall
17-03-17 19:48:34.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:48:34.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.373046875, Z-Position -0.131026089439309. ------
17-03-17 19:48:34.718 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:48:34.718 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13743 mm
17-03-17 19:48:34.718 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:48:34.728 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:48:34.728 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:48:34.728 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30021, sync = True, waitForSettling = False)
17-03-17 19:48:34.728 -07 000000462 INF: Z Motor: Moving to -0.137427 mm, started at -0.131026 mm, distance = -6.40 um
17-03-17 19:48:34.728 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:48:34.728 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:48:34.728 -07 000000431 INF: Y Motor: Moving to 68.2126 mm, started at 67.3730 mm, delta = 0.8396 mm
17-03-17 19:48:34.738 -07 000000462 INF: FPGA: Xmit ZDACW 30021\n [Z Motor]
17-03-17 19:48:34.738 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:48:34.748 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:34.748 -07 000000462 INF: FPGA: 'ZDACW 30021' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:48:34.748 -07 000000626 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:48:34.758 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:48:34.758 -07 000000431 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:34.758 -07 000000431 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:48:34.758 -07 000000431 INF: Y Motor: Moving 1343 steps-21
17-03-17 19:48:34.758 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:34.758 -07 000000569 INF: FPGA: Recv ZDACR 30021
17-03-17 19:48:34.768 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:48:34.768 -07 000000462 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 19:48:34.768 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:48:34.908 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:48:34.908 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:48:34.908 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:34.908 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:48:34.908 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:48:34.908 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:34.908 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:34.908 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:34.908 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:48:34.918 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:48:34.928 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:48:34.928 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 203 ms overall
17-03-17 19:48:35.138 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:48:35.138 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:48:35.178 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:35.178 -07 000000626 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:48:35.188 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:48:35.188 -07 000000431 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:35.188 -07 000000431 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 19:48:35.188 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.164 mm/sec
17-03-17 19:48:36.138 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:36.138 -07 000000501 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:48:36.148 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:36.148 -07 000000431 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:36.158 -07 000000431 INF: Y Motor: After move to 68.212608, error = -0.006554, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:48:36.158 -07 000000431 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:48:36.158 -07 000000431 INF: Y Motor: Moved to 68.2061 after 1433 ms (table move)
17-03-17 19:48:36.168 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137427 mm (DAC = 30021)
17-03-17 19:48:36.168 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:36.168 -07 000000476 INF: FPGA: Recv ZSGSRD 30691
17-03-17 19:48:36.178 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:48:36.178 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:36.178 -07 000000482 INF: FPGA: Recv ZSGSRD 30679
17-03-17 19:48:36.188 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:36.188 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:36.188 -07 000000618 INF: FPGA: Recv ZSGSRD 30684
17-03-17 19:48:36.198 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:36.198 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:36.198 -07 000000382 INF: FPGA: Recv ZSGSRD 30688
17-03-17 19:48:36.208 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:36.208 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:36.208 -07 000000561 INF: FPGA: Recv ZSGSRD 30685
17-03-17 19:48:36.218 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:36.218 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:36.218 -07 000000476 INF: FPGA: Recv ZSGSRD 30685
17-03-17 19:48:36.228 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:36.228 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:36.228 -07 000000482 INF: FPGA: Recv ZSGSRD 30681
17-03-17 19:48:36.238 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:36.238 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:36.238 -07 000000431 INF: FPGA: Recv ZSGSRD 30679
17-03-17 19:48:36.248 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:36.248 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:36.248 -07 000000382 INF: FPGA: Recv ZSGSRD 30679
17-03-17 19:48:36.258 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:36.258 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:36.258 -07 000000561 INF: FPGA: Recv ZSGSRD 30685
17-03-17 19:48:36.268 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:36.268 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:36.268 -07 000000476 INF: FPGA: Recv ZPIEZORD 26666
17-03-17 19:48:36.278 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:36.278 -07 000000547 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.581 V. Piezo Error = -8.8 V.
17-03-17 19:48:36.278 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30684 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30684 (-136.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30679 (-136.6 uncal um), Max = 30691 (-136.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:48:36.278 -07 000000547 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30684, posNoise = 7, negNoise = 5
17-03-17 19:48:36.278 -07 000000547 INF: Z Motor: After move to -0.137427, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:36.278 -07 000000547 INF: Z Motor: Settle wait time = 1438 ms, measure time = 108 ms (allowed 150 ms), total time = 1546 ms
17-03-17 19:48:36.278 -07 000000547 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:48:36.328 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 19:48:36.328 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:48:36.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:36.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:36.328 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:36.328 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:36.328 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:48:36.328 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:36.338 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:48:36.338 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:48:36.338 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:48:36.338 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:48:36.348 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:48:36.348 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:48:36.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:48:36.398 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:48:36.598 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:48:36.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:48:36.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:48:36.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 19:48:36.638 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:48:36.638 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 19:48:36.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 19:48:36.718 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:48:36.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:48:36.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:36.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:48:36.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:48:36.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:48:36.738 -07 000000429 INF: Autofocus start
17-03-17 19:48:36.738 -07 000000429 INF: MeasureProfile start
17-03-17 19:48:36.738 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:48:36.738 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:48:36.748 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:48:36.748 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:48:36.748 -07 000000429 INF: MeasureProfile done
17-03-17 19:48:36.748 -07 000000429 INF: X=16  Z correction [um]=0.0530179
17-03-17 19:48:36.748 -07 000000429 INF: Autofocus finished
17-03-17 19:48:36.948 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:48:36.948 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:48:36.948 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2060546875, Z-position -0.137443877368928. ----------
17-03-17 19:48:36.948 -07 000000610 INF: Cycle	30	Tile	11	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:48:36.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28545, sync = True, waitForSettling = True)
17-03-17 19:48:36.958 -07 000000610 INF: Z Motor: Moving to -0.130671 mm, started at -0.137444 mm, distance = 6.77 um
17-03-17 19:48:36.958 -07 000000610 INF: FPGA: Xmit ZDACW 28545\n [Z Motor]
17-03-17 19:48:36.958 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 19:48:36.968 -07 000000610 INF: FPGA: 'ZDACW 28545' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:48:36.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:36.968 -07 000000476 INF: FPGA: Recv ZDACR 28545
17-03-17 19:48:36.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:36.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:48:37.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:37.128 -07 000000438 INF: FPGA: Recv ZSGSRD 29630
17-03-17 19:48:37.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:37.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:37.138 -07 000000618 INF: FPGA: Recv ZSGSRD 29634
17-03-17 19:48:37.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:37.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:37.148 -07 000000551 INF: FPGA: Recv ZSGSRD 29634
17-03-17 19:48:37.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:37.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:37.158 -07 000000478 INF: FPGA: Recv ZSGSRD 29622
17-03-17 19:48:37.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:37.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:37.168 -07 000000501 INF: FPGA: Recv ZSGSRD 29635
17-03-17 19:48:37.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:37.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:37.178 -07 000000438 INF: FPGA: Recv ZSGSRD 29631
17-03-17 19:48:37.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:37.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:37.188 -07 000000618 INF: FPGA: Recv ZSGSRD 29628
17-03-17 19:48:37.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:37.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:37.198 -07 000000541 INF: FPGA: Recv ZSGSRD 29631
17-03-17 19:48:37.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:37.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:37.208 -07 000000486 INF: FPGA: Recv ZSGSRD 29626
17-03-17 19:48:37.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:37.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:37.218 -07 000000476 INF: FPGA: Recv ZSGSRD 29634
17-03-17 19:48:37.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:37.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:37.228 -07 000000569 INF: FPGA: Recv ZPIEZORD 25304
17-03-17 19:48:37.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:37.238 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.356 V. Piezo Error = -9.5 V.
17-03-17 19:48:37.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29630 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29631 (-129.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29622 (-129.8 uncal um), Max = 29635 (-129.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:48:37.238 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29630, posNoise = 5, negNoise = 8
17-03-17 19:48:37.238 -07 000000610 INF: Z Motor: After move to -0.130671, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:37.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:48:37.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:37.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:37.238 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:37.238 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:37.238 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:48:37.238 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:48:37.238 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:48:37.238 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:37.238 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:48:37.238 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:48:37.238 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:48:37.238 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:48:37.248 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:48:37.248 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:48:37.248 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:48:37.248 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:48:37.258 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 19:48:37.258 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:48:37.258 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:48:37.258 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:48:37.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 28722 150\n [Camera]
17-03-17 19:48:37.458 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:48:37.868 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:48:37.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:48:37.868 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:37.868 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:37.868 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) start.
17-03-17 19:48:37.868 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-17 19:48:37.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-17 19:48:37.868 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:37.988 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:37.988 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:48:38.058 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28722 790
17-03-17 19:48:38.208 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:48:38.248 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1124568280, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:48:38.248 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:48:38.248 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:38.258 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:38.258 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:48:38.358 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:48:38.358 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:48:38.358 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:38.368 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:48:38.368 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 499 ms.
17-03-17 19:48:38.408 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:48:38.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:48:38.408 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:38.408 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:48:38.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:48:38.408 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:38.408 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:38.408 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:48:38.408 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:38.408 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:48:38.598 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:48:38.598 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:48:38.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 28722 150' command took 2 ms to send, 1323 ms to get response, and 1334 ms overall
17-03-17 19:48:38.598 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.131374
17-03-17 19:48:38.598 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13137 mm
17-03-17 19:48:38.598 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:48:38.598 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:48:38.598 -07 000000382 INF: Y Motor: Moving to 69.0426 mm, started at 68.2061 mm, delta = 0.8366 mm
17-03-17 19:48:38.598 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:38.598 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28699, sync = True, waitForSettling = False)
17-03-17 19:48:38.598 -07 000000431 INF: Z Motor: Moving to -0.131376 mm, started at -0.130673 mm, distance = -0.70 um
17-03-17 19:48:38.608 -07 000000431 INF: FPGA: Xmit ZDACW 28699\n [Z Motor]
17-03-17 19:48:38.608 -07 000000476 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:48:38.608 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:48:38.608 -07 000000382 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:38.608 -07 000000382 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:48:38.608 -07 000000382 INF: Y Motor: Moving 1338 steps-13
17-03-17 19:48:38.608 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 19:48:38.618 -07 000000431 INF: FPGA: 'ZDACW 28699' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:48:38.618 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:38.618 -07 000000486 INF: FPGA: Recv ZDACR 28699
17-03-17 19:48:38.628 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:48:38.628 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:38.628 -07 000000431 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 19:48:38.788 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 19:48:38.788 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 19:48:38.788 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:38.788 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:48:38.788 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:48:38.788 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:38.788 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:48:38.788 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:48:38.788 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:48:38.798 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:48:38.998 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 19:48:38.998 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:48:39.038 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:39.038 -07 000000478 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:48:39.048 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:48:39.048 -07 000000382 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:39.048 -07 000000382 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:48:39.048 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.107 mm/sec
17-03-17 19:48:39.238 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.994908,
17-03-17 19:48:39.998 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:39.998 -07 000000593 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:48:40.008 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:40.008 -07 000000382 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:40.028 -07 000000382 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:48:40.028 -07 000000382 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:48:40.028 -07 000000382 INF: Y Motor: Moved to 69.0278 after 1423 ms (table move)
17-03-17 19:48:40.028 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131376 mm (DAC = 28699)
17-03-17 19:48:40.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.028 -07 000000478 INF: FPGA: Recv ZSGSRD 29735
17-03-17 19:48:40.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:48:40.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.038 -07 000000482 INF: FPGA: Recv ZSGSRD 29738
17-03-17 19:48:40.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.048 -07 000000551 INF: FPGA: Recv ZSGSRD 29740
17-03-17 19:48:40.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.058 -07 000000462 INF: FPGA: Recv ZSGSRD 29740
17-03-17 19:48:40.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.068 -07 000000431 INF: FPGA: Recv ZSGSRD 29733
17-03-17 19:48:40.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.078 -07 000000478 INF: FPGA: Recv ZSGSRD 29750
17-03-17 19:48:40.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.088 -07 000000482 INF: FPGA: Recv ZSGSRD 29741
17-03-17 19:48:40.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.098 -07 000000551 INF: FPGA: Recv ZSGSRD 29734
17-03-17 19:48:40.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.108 -07 000000501 INF: FPGA: Recv ZSGSRD 29738
17-03-17 19:48:40.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.118 -07 000000382 INF: FPGA: Recv ZSGSRD 29735
17-03-17 19:48:40.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:40.128 -07 000000476 INF: FPGA: Recv ZPIEZORD 25475
17-03-17 19:48:40.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.138 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.379 V. Piezo Error = -9.4 V.
17-03-17 19:48:40.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29738 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29738 (-130.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29733 (-130.6 uncal um), Max = 29750 (-130.7 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:48:40.138 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29738, posNoise = 12, negNoise = 5
17-03-17 19:48:40.138 -07 000000610 INF: Z Motor: After move to -0.131376, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:40.138 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 106 ms (allowed 150 ms), total time = 1532 ms
17-03-17 19:48:40.138 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:48:40.188 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 19:48:40.188 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:48:40.188 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.131366572682822. ----------
17-03-17 19:48:40.188 -07 000000610 INF: Cycle	30	Tile	12	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:48:40.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28522, sync = True, waitForSettling = True)
17-03-17 19:48:40.188 -07 000000610 INF: Z Motor: Moving to -0.130565 mm, started at -0.131367 mm, distance = 0.80 um
17-03-17 19:48:40.188 -07 000000610 INF: FPGA: Xmit ZDACW 28522\n [Z Motor]
17-03-17 19:48:40.188 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:48:40.198 -07 000000610 INF: FPGA: 'ZDACW 28522' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:48:40.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:40.198 -07 000000431 INF: FPGA: Recv ZDACR 28522
17-03-17 19:48:40.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:48:40.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:48:40.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.358 -07 000000501 INF: FPGA: Recv ZSGSRD 29616
17-03-17 19:48:40.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:40.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.368 -07 000000438 INF: FPGA: Recv ZSGSRD 29613
17-03-17 19:48:40.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.378 -07 000000618 INF: FPGA: Recv ZSGSRD 29614
17-03-17 19:48:40.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.388 -07 000000626 INF: FPGA: Recv ZSGSRD 29614
17-03-17 19:48:40.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.398 -07 000000382 INF: FPGA: Recv ZSGSRD 29612
17-03-17 19:48:40.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.408 -07 000000431 INF: FPGA: Recv ZSGSRD 29620
17-03-17 19:48:40.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.418 -07 000000462 INF: FPGA: Recv ZSGSRD 29613
17-03-17 19:48:40.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.428 -07 000000569 INF: FPGA: Recv ZSGSRD 29611
17-03-17 19:48:40.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.438 -07 000000626 INF: FPGA: Recv ZSGSRD 29615
17-03-17 19:48:40.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:40.448 -07 000000382 INF: FPGA: Recv ZSGSRD 29615
17-03-17 19:48:40.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:40.458 -07 000000561 INF: FPGA: Recv ZPIEZORD 25303
17-03-17 19:48:40.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:40.468 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.5 V.
17-03-17 19:48:40.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29614 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29614 (-129.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29611 (-129.8 uncal um), Max = 29620 (-129.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:48:40.468 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29614, posNoise = 6, negNoise = 3
17-03-17 19:48:40.468 -07 000000610 INF: Z Motor: After move to -0.130565, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:40.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:48:40.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:40.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:40.468 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:40.468 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:40.468 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:48:40.468 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:48:40.468 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:48:40.468 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:40.468 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:48:40.468 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:48:40.468 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:48:40.468 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:48:40.468 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:48:40.468 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:48:40.478 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:48:40.478 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:48:40.488 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:48:40.488 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:48:40.488 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:48:40.488 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:48:40.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 28699 150\n [Camera]
17-03-17 19:48:40.698 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 19:48:41.098 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:48:41.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:48:41.098 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:41.098 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:41.098 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:48:41.098 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:48:41.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:48:41.098 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:41.098 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:41.098 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:48:41.288 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28699 790
17-03-17 19:48:41.438 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:48:41.468 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:48:41.468 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:48:41.468 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:41.478 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:48:41.478 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:48:41.478 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:41.478 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:41.478 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:48:41.478 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:48:41.478 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:48:41.638 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:48:41.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:48:41.638 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:41.638 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:41.638 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:48:41.638 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:48:41.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:48:41.638 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:41.638 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:41.638 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:48:41.718 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:48:41.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:48:41.828 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:48:41.828 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:48:41.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 28699 150' command took 2 ms to send, 1322 ms to get response, and 1334 ms overall
17-03-17 19:48:41.828 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.131001
17-03-17 19:48:41.828 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13100 mm
17-03-17 19:48:41.828 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:48:41.828 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:48:41.828 -07 000000429 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 19:48:41.828 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:41.828 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 28617, sync = True, waitForSettling = False)
17-03-17 19:48:41.828 -07 000000424 INF: Z Motor: Moving to -0.131000 mm, started at -0.130570 mm, distance = -0.43 um
17-03-17 19:48:41.838 -07 000000424 INF: FPGA: Xmit ZDACW 28617\n [Z Motor]
17-03-17 19:48:41.838 -07 000000551 INF: FPGA: Recv YRDPOS 141370
17-03-17 19:48:41.838 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:48:41.838 -07 000000429 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:41.838 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:48:41.838 -07 000000429 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:48:41.838 -07 000000429 INF: Y Motor: Moving 1351 steps-30
17-03-17 19:48:41.848 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:48:41.848 -07 000000424 INF: FPGA: 'ZDACW 28617' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:48:41.858 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:41.858 -07 000000618 INF: FPGA: Recv ZDACR 28617
17-03-17 19:48:41.868 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:48:41.868 -07 000000424 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 19:48:42.018 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:48:42.018 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:48:42.018 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:42.018 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:48:42.018 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:48:42.018 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:42.028 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:48:42.028 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:48:42.028 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 19:48:42.038 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 19:48:42.218 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 19:48:42.218 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 19:48:42.268 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:42.268 -07 000000476 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:48:42.278 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:48:42.278 -07 000000429 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:42.278 -07 000000429 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:48:42.278 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.200 mm/sec
17-03-17 19:48:43.228 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:43.228 -07 000000424 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:48:43.238 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:43.238 -07 000000429 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:43.258 -07 000000429 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:48:43.258 -07 000000429 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:48:43.258 -07 000000429 INF: Y Motor: Moved to 69.8643 after 1427 ms (table move)
17-03-17 19:48:43.258 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131000 mm (DAC = 28617)
17-03-17 19:48:43.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.268 -07 000000551 INF: FPGA: Recv ZSGSRD 29682
17-03-17 19:48:43.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:48:43.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.268 -07 000000476 INF: FPGA: Recv ZSGSRD 29676
17-03-17 19:48:43.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.278 -07 000000462 INF: FPGA: Recv ZSGSRD 29691
17-03-17 19:48:43.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.288 -07 000000382 INF: FPGA: Recv ZSGSRD 29683
17-03-17 19:48:43.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.298 -07 000000478 INF: FPGA: Recv ZSGSRD 29681
17-03-17 19:48:43.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.308 -07 000000551 INF: FPGA: Recv ZSGSRD 29682
17-03-17 19:48:43.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.318 -07 000000561 INF: FPGA: Recv ZSGSRD 29674
17-03-17 19:48:43.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.328 -07 000000486 INF: FPGA: Recv ZSGSRD 29677
17-03-17 19:48:43.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.338 -07 000000618 INF: FPGA: Recv ZSGSRD 29680
17-03-17 19:48:43.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.348 -07 000000541 INF: FPGA: Recv ZSGSRD 29682
17-03-17 19:48:43.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:43.358 -07 000000551 INF: FPGA: Recv ZPIEZORD 25408
17-03-17 19:48:43.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.368 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -9.4 V.
17-03-17 19:48:43.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29681 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29682 (-130.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29674 (-130.2 uncal um), Max = 29691 (-130.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:48:43.368 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29681, posNoise = 10, negNoise = 7
17-03-17 19:48:43.368 -07 000000610 INF: Z Motor: After move to -0.131000, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:43.368 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 105 ms (allowed 150 ms), total time = 1534 ms
17-03-17 19:48:43.368 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:48:43.418 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 19:48:43.418 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:48:43.418 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.131000392590742. ----------
17-03-17 19:48:43.418 -07 000000610 INF: Cycle	30	Tile	13	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:48:43.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28440, sync = True, waitForSettling = True)
17-03-17 19:48:43.418 -07 000000610 INF: Z Motor: Moving to -0.130190 mm, started at -0.131000 mm, distance = 0.81 um
17-03-17 19:48:43.418 -07 000000610 INF: FPGA: Xmit ZDACW 28440\n [Z Motor]
17-03-17 19:48:43.418 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:48:43.428 -07 000000610 INF: FPGA: 'ZDACW 28440' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:48:43.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:43.428 -07 000000541 INF: FPGA: Recv ZDACR 28440
17-03-17 19:48:43.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:48:43.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.588 -07 000000462 INF: FPGA: Recv ZSGSRD 29558
17-03-17 19:48:43.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:43.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.598 -07 000000561 INF: FPGA: Recv ZSGSRD 29564
17-03-17 19:48:43.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.608 -07 000000482 INF: FPGA: Recv ZSGSRD 29561
17-03-17 19:48:43.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.618 -07 000000431 INF: FPGA: Recv ZSGSRD 29555
17-03-17 19:48:43.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.628 -07 000000541 INF: FPGA: Recv ZSGSRD 29562
17-03-17 19:48:43.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:43.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.638 -07 000000486 INF: FPGA: Recv ZSGSRD 29554
17-03-17 19:48:43.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.648 -07 000000561 INF: FPGA: Recv ZSGSRD 29549
17-03-17 19:48:43.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.658 -07 000000618 INF: FPGA: Recv ZSGSRD 29555
17-03-17 19:48:43.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.668 -07 000000501 INF: FPGA: Recv ZSGSRD 29552
17-03-17 19:48:43.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:43.678 -07 000000438 INF: FPGA: Recv ZSGSRD 29559
17-03-17 19:48:43.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:43.688 -07 000000482 INF: FPGA: Recv ZPIEZORD 25251
17-03-17 19:48:43.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:43.698 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.340 V. Piezo Error = -9.5 V.
17-03-17 19:48:43.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29557 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29556 (-129.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29549 (-129.4 uncal um), Max = 29564 (-129.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:48:43.698 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29557, posNoise = 7, negNoise = 8
17-03-17 19:48:43.698 -07 000000610 INF: Z Motor: After move to -0.130190, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:43.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:48:43.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:43.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:43.698 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:43.698 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:43.698 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:48:43.698 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:43.698 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:48:43.698 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:48:43.698 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:48:43.698 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:48:43.698 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:48:43.698 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:48:43.708 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:48:43.708 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:48:43.708 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:48:43.708 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:48:43.718 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:48:43.718 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:48:43.718 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:48:43.718 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:48:43.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 28617 150\n [Camera]
17-03-17 19:48:43.918 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:48:44.328 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:48:44.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:48:44.328 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:44.328 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:44.328 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:48:44.328 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:48:44.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:48:44.328 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:44.328 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:44.328 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:48:44.518 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28617 790
17-03-17 19:48:44.598 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.001704,
17-03-17 19:48:44.668 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:48:44.708 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:48:44.708 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:48:44.708 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:44.708 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:48:44.708 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:48:44.708 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:44.718 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:48:44.718 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:48:44.718 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:48:44.718 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:48:44.868 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:48:44.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:48:44.868 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:44.868 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:44.868 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 19:48:44.868 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:48:44.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:48:44.868 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:44.868 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:44.868 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 19:48:45.058 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-17 19:48:45.058 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:48:45.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 28617 150' command took 2 ms to send, 1324 ms to get response, and 1334 ms overall
17-03-17 19:48:45.058 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.130618
17-03-17 19:48:45.058 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13062 mm
17-03-17 19:48:45.058 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:48:45.068 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:48:45.068 -07 000000551 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 19:48:45.068 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:45.068 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28534, sync = True, waitForSettling = False)
17-03-17 19:48:45.068 -07 000000431 INF: Z Motor: Moving to -0.130620 mm, started at -0.130204 mm, distance = -0.42 um
17-03-17 19:48:45.068 -07 000000482 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:48:45.078 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:48:45.078 -07 000000551 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:45.078 -07 000000551 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:48:45.078 -07 000000551 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:48:45.078 -07 000000431 INF: FPGA: Xmit ZDACW 28534\n [Z Motor]
17-03-17 19:48:45.078 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:48:45.088 -07 000000431 INF: FPGA: 'ZDACW 28534' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 19:48:45.088 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:45.088 -07 000000593 INF: FPGA: Recv ZDACR 28534
17-03-17 19:48:45.098 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:48:45.098 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:45.098 -07 000000431 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-17 19:48:45.248 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:48:45.248 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:48:45.248 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:45.248 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:48:45.248 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:48:45.248 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:45.258 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:48:45.258 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:48:45.258 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:48:45.258 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:48:45.468 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 19:48:45.468 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:48:45.508 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:45.508 -07 000000593 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:48:45.518 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:48:45.518 -07 000000551 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:45.518 -07 000000551 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:48:45.518 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-17 19:48:46.468 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:46.468 -07 000000382 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:48:46.478 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:46.478 -07 000000551 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:46.498 -07 000000551 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:48:46.498 -07 000000551 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:48:46.498 -07 000000551 INF: Y Motor: Moved to 70.6895 after 1432 ms (table move)
17-03-17 19:48:46.498 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130620 mm (DAC = 28534)
17-03-17 19:48:46.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.498 -07 000000462 INF: FPGA: Recv ZSGSRD 29621
17-03-17 19:48:46.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:48:46.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.508 -07 000000424 INF: FPGA: Recv ZSGSRD 29621
17-03-17 19:48:46.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.518 -07 000000541 INF: FPGA: Recv ZSGSRD 29617
17-03-17 19:48:46.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.528 -07 000000486 INF: FPGA: Recv ZSGSRD 29622
17-03-17 19:48:46.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.538 -07 000000429 INF: FPGA: Recv ZSGSRD 29626
17-03-17 19:48:46.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.548 -07 000000478 INF: FPGA: Recv ZSGSRD 29627
17-03-17 19:48:46.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.558 -07 000000424 INF: FPGA: Recv ZSGSRD 29631
17-03-17 19:48:46.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.568 -07 000000431 INF: FPGA: Recv ZSGSRD 29623
17-03-17 19:48:46.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.578 -07 000000626 INF: FPGA: Recv ZSGSRD 29623
17-03-17 19:48:46.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.588 -07 000000476 INF: FPGA: Recv ZSGSRD 29624
17-03-17 19:48:46.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:46.598 -07 000000569 INF: FPGA: Recv ZPIEZORD 25332
17-03-17 19:48:46.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.608 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.4 V.
17-03-17 19:48:46.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29624 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29623 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29617 (-129.8 uncal um), Max = 29631 (-129.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:48:46.608 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29624, posNoise = 7, negNoise = 7
17-03-17 19:48:46.608 -07 000000610 INF: Z Motor: After move to -0.130620, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:46.608 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 105 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:48:46.608 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:48:46.658 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 19:48:46.658 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:48:46.658 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.130634212498662. ----------
17-03-17 19:48:46.658 -07 000000610 INF: Cycle	30	Tile	14	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:48:46.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28357, sync = True, waitForSettling = True)
17-03-17 19:48:46.658 -07 000000610 INF: Z Motor: Moving to -0.129810 mm, started at -0.130634 mm, distance = 0.82 um
17-03-17 19:48:46.658 -07 000000610 INF: FPGA: Xmit ZDACW 28357\n [Z Motor]
17-03-17 19:48:46.658 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:48:46.668 -07 000000610 INF: FPGA: 'ZDACW 28357' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:48:46.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:46.668 -07 000000541 INF: FPGA: Recv ZDACR 28357
17-03-17 19:48:46.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:46.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:48:46.718 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:48:46.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:48:46.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.828 -07 000000482 INF: FPGA: Recv ZSGSRD 29498
17-03-17 19:48:46.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:46.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.838 -07 000000541 INF: FPGA: Recv ZSGSRD 29498
17-03-17 19:48:46.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.848 -07 000000462 INF: FPGA: Recv ZSGSRD 29498
17-03-17 19:48:46.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.858 -07 000000486 INF: FPGA: Recv ZSGSRD 29503
17-03-17 19:48:46.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.868 -07 000000476 INF: FPGA: Recv ZSGSRD 29497
17-03-17 19:48:46.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.878 -07 000000569 INF: FPGA: Recv ZSGSRD 29503
17-03-17 19:48:46.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.888 -07 000000382 INF: FPGA: Recv ZSGSRD 29496
17-03-17 19:48:46.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.898 -07 000000462 INF: FPGA: Recv ZSGSRD 29490
17-03-17 19:48:46.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.908 -07 000000486 INF: FPGA: Recv ZSGSRD 29499
17-03-17 19:48:46.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:46.918 -07 000000593 INF: FPGA: Recv ZSGSRD 29494
17-03-17 19:48:46.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:46.928 -07 000000478 INF: FPGA: Recv ZPIEZORD 25180
17-03-17 19:48:46.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:46.938 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -9.5 V.
17-03-17 19:48:46.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29498 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29498 (-129.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29490 (-129.0 uncal um), Max = 29503 (-129.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:48:46.938 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29498, posNoise = 5, negNoise = 8
17-03-17 19:48:46.938 -07 000000610 INF: Z Motor: After move to -0.129810, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:46.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:48:46.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:46.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:46.938 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:46.938 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:46.938 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:48:46.938 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:46.938 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:48:46.938 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:48:46.938 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:48:46.938 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:48:46.938 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:48:46.938 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:48:46.938 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:48:46.938 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:48:46.948 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:48:46.948 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:48:46.958 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 19:48:46.958 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:48:46.958 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 19:48:46.958 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 19:48:46.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 28534 150\n [Camera]
17-03-17 19:48:47.168 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:48:47.568 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-17 19:48:47.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-17 19:48:47.568 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:47.568 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:47.568 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:48:47.578 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 19:48:47.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 19:48:47.578 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:47.578 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:47.578 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 19:48:47.758 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28534 790
17-03-17 19:48:47.908 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:48:47.968 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:48:47.968 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:48:47.968 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:47.978 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 19:48:47.978 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:48:47.978 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:47.978 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:47.978 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:48:47.978 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:48:47.988 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:48:48.108 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:48:48.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:48:48.108 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:48.108 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:48.108 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 19:48:48.108 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:48:48.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:48:48.108 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:48.108 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:48.108 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 19:48:48.298 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:48:48.298 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:48:48.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 28534 150' command took 2 ms to send, 1325 ms to get response, and 1335 ms overall
17-03-17 19:48:48.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:48:48.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.689453125, Z-Position -0.1298247617688. ------
17-03-17 19:48:48.318 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:48:48.318 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13642 mm
17-03-17 19:48:48.318 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:48:48.448 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:48:48.448 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-17 19:48:48.458 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:48:48.458 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:48:48.458 -07 000000482 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-17 19:48:48.458 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29801, sync = True, waitForSettling = False)
17-03-17 19:48:48.458 -07 000000551 INF: Z Motor: Moving to -0.136420 mm, started at -0.129825 mm, distance = -6.60 um
17-03-17 19:48:48.468 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:48.468 -07 000000593 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:48:48.478 -07 000000551 INF: FPGA: Xmit ZDACW 29801\n [Z Motor]
17-03-17 19:48:48.478 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:48:48.478 -07 000000482 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:48.478 -07 000000482 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:48:48.478 -07 000000482 INF: Y Motor: Moving 1349 steps-27
17-03-17 19:48:48.478 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 19:48:48.488 -07 000000551 INF: FPGA: 'ZDACW 29801' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:48:48.488 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:48.488 -07 000000429 INF: FPGA: Recv ZDACR 29801
17-03-17 19:48:48.498 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:48:48.498 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:48.498 -07 000000551 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:48:48.498 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:48:48.498 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:48:48.498 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:48.498 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:48.498 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:48:48.508 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:48:48.508 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:48:48.508 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:48.508 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:48.518 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:48:48.658 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:48:48.658 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 19:48:48.868 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 19:48:48.868 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:48:48.908 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:48.908 -07 000000547 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:48:48.918 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:48:48.918 -07 000000482 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:48.918 -07 000000482 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:48:48.918 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.118 mm/sec
17-03-17 19:48:49.868 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:49.868 -07 000000476 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:48:49.878 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:49.878 -07 000000482 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:49.898 -07 000000482 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:48:49.898 -07 000000482 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:48:49.898 -07 000000482 INF: Y Motor: Moved to 71.5200 after 1442 ms (table move)
17-03-17 19:48:49.898 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136420 mm (DAC = 29801)
17-03-17 19:48:49.898 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:49.908 -07 000000551 INF: FPGA: Recv ZSGSRD 30532
17-03-17 19:48:49.908 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:48:49.908 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:49.908 -07 000000569 INF: FPGA: Recv ZSGSRD 30529
17-03-17 19:48:49.918 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:48:49.918 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:49.918 -07 000000438 INF: FPGA: Recv ZSGSRD 30518
17-03-17 19:48:49.928 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:49.928 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:49.928 -07 000000431 INF: FPGA: Recv ZSGSRD 30528
17-03-17 19:48:49.938 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:49.938 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:49.938 -07 000000486 INF: FPGA: Recv ZSGSRD 30528
17-03-17 19:48:49.948 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:49.958 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:49.958 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.014009,
17-03-17 19:48:49.958 -07 000000478 INF: FPGA: Recv ZSGSRD 30528
17-03-17 19:48:49.968 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:48:49.978 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:49.978 -07 000000551 INF: FPGA: Recv ZSGSRD 30520
17-03-17 19:48:49.988 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:48:49.988 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:49.988 -07 000000438 INF: FPGA: Recv ZSGSRD 30529
17-03-17 19:48:49.998 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:50.018 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:50.018 -07 000000431 INF: FPGA: Recv ZSGSRD 30527
17-03-17 19:48:50.028 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:48:50.028 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:50.028 -07 000000501 INF: FPGA: Recv ZSGSRD 30535
17-03-17 19:48:50.038 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:50.048 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:50.048 -07 000000478 INF: FPGA: Recv ZPIEZORD 26529
17-03-17 19:48:50.058 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:48:50.058 -07 000000424 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -8.8 V.
17-03-17 19:48:50.058 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30527 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30528 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30518 (-135.6 uncal um), Max = 30535 (-135.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:48:50.058 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30527, posNoise = 8, negNoise = 9
17-03-17 19:48:50.058 -07 000000424 INF: Z Motor: After move to -0.136420, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:50.058 -07 000000424 INF: Z Motor: Settle wait time = 1445 ms, measure time = 152 ms (allowed 150 ms), total time = 1597 ms
17-03-17 19:48:50.058 -07 000000424 INF: Z Motor: Warning: Actual position measuring time = 152 ms, longer than max expected time of 150 ms
17-03-17 19:48:50.058 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1738 ms
17-03-17 19:48:50.058 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:48:50.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:50.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:50.058 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:50.058 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:50.058 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:48:50.058 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:50.058 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:48:50.058 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:48:50.068 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:48:50.068 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:48:50.078 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 19:48:50.078 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 19:48:50.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:48:50.118 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:48:50.318 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:48:50.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:48:50.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:48:50.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:48:50.358 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:48:50.358 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 19:48:50.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 19:48:50.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 19:48:50.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:50.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:48:50.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 19:48:50.458 -07 000000626 INF: Autofocus start
17-03-17 19:48:50.458 -07 000000626 INF: MeasureProfile start
17-03-17 19:48:50.458 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:48:50.458 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:48:50.468 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:48:50.468 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:48:50.468 -07 000000626 INF: MeasureProfile done
17-03-17 19:48:50.468 -07 000000626 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:48:50.468 -07 000000626 INF: Autofocus finished
17-03-17 19:48:50.668 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:48:50.668 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 19:48:50.678 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.136435276062672. ----------
17-03-17 19:48:50.678 -07 000000610 INF: Cycle	30	Tile	15	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:48:50.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28308, sync = True, waitForSettling = True)
17-03-17 19:48:50.688 -07 000000610 INF: Z Motor: Moving to -0.129586 mm, started at -0.136435 mm, distance = 6.85 um
17-03-17 19:48:50.688 -07 000000610 INF: FPGA: Xmit ZDACW 28308\n [Z Motor]
17-03-17 19:48:50.688 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:48:50.698 -07 000000610 INF: FPGA: 'ZDACW 28308' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:50.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:50.698 -07 000000618 INF: FPGA: Recv ZDACR 28308
17-03-17 19:48:50.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:50.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:48:50.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:50.858 -07 000000431 INF: FPGA: Recv ZSGSRD 29458
17-03-17 19:48:50.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:50.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:50.868 -07 000000561 INF: FPGA: Recv ZSGSRD 29460
17-03-17 19:48:50.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:50.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:50.878 -07 000000476 INF: FPGA: Recv ZSGSRD 29466
17-03-17 19:48:50.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:50.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:50.888 -07 000000478 INF: FPGA: Recv ZSGSRD 29458
17-03-17 19:48:50.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:50.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:50.898 -07 000000482 INF: FPGA: Recv ZSGSRD 29457
17-03-17 19:48:50.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:50.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:50.908 -07 000000431 INF: FPGA: Recv ZSGSRD 29461
17-03-17 19:48:50.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:50.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:50.918 -07 000000541 INF: FPGA: Recv ZSGSRD 29465
17-03-17 19:48:50.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:50.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:50.928 -07 000000501 INF: FPGA: Recv ZSGSRD 29453
17-03-17 19:48:50.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:50.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:50.938 -07 000000478 INF: FPGA: Recv ZSGSRD 29462
17-03-17 19:48:50.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:50.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:50.948 -07 000000482 INF: FPGA: Recv ZSGSRD 29462
17-03-17 19:48:50.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:50.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:50.958 -07 000000593 INF: FPGA: Recv ZPIEZORD 25126
17-03-17 19:48:50.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:50.968 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -9.5 V.
17-03-17 19:48:50.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29460 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29460 (-128.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29453 (-128.8 uncal um), Max = 29466 (-128.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:48:50.968 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29460, posNoise = 6, negNoise = 7
17-03-17 19:48:50.968 -07 000000610 INF: Z Motor: After move to -0.129586, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:50.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:48:50.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:50.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:50.968 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:50.968 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:50.968 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:48:50.968 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:50.968 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:48:50.968 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:48:50.968 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:48:50.968 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:48:50.968 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:48:50.968 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:48:50.978 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:48:50.978 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:48:50.978 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:48:50.978 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:48:50.988 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:48:50.988 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:48:50.988 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:48:50.988 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:48:50.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 28485 150\n [Camera]
17-03-17 19:48:51.188 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:48:51.598 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-17 19:48:51.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-17 19:48:51.598 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:51.598 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-17 19:48:51.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-17 19:48:51.598 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:51.608 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:51.608 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:48:51.608 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:51.608 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:48:51.718 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:48:51.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:48:51.788 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28485 790
17-03-17 19:48:51.938 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:48:51.978 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 19:48:51.978 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 19:48:51.978 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:51.978 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 19:48:51.978 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 19:48:51.978 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:51.978 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:48:51.978 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:48:51.988 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:48:51.988 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:48:52.128 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:48:52.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:48:52.138 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:52.138 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:48:52.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:48:52.138 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:52.138 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:52.138 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 19:48:52.258 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:52.258 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 19:48:52.328 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:48:52.328 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:48:52.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 28485 150' command took 2 ms to send, 1331 ms to get response, and 1338 ms overall
17-03-17 19:48:52.328 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.129473
17-03-17 19:48:52.328 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12947 mm
17-03-17 19:48:52.328 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:48:52.328 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:48:52.328 -07 000000486 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 19:48:52.328 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:52.328 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 28283, sync = True, waitForSettling = False)
17-03-17 19:48:52.328 -07 000000547 INF: Z Motor: Moving to -0.129471 mm, started at -0.129581 mm, distance = 0.11 um
17-03-17 19:48:52.328 -07 000000626 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:48:52.338 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:48:52.338 -07 000000486 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:52.338 -07 000000486 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:48:52.338 -07 000000486 INF: Y Motor: Moving 1348 steps-26
17-03-17 19:48:52.338 -07 000000547 INF: FPGA: Xmit ZDACW 28283\n [Z Motor]
17-03-17 19:48:52.338 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:48:52.348 -07 000000547 INF: FPGA: 'ZDACW 28283' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:48:52.348 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:48:52.358 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:52.358 -07 000000561 INF: FPGA: Recv ZDACR 28283
17-03-17 19:48:52.368 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:48:52.368 -07 000000547 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 19:48:52.528 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 19:48:52.528 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:48:52.528 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:52.528 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:52.538 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:48:52.648 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:48:52.648 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:48:52.648 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:52.648 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:48:52.648 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-17 19:48:52.718 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 19:48:52.718 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:48:52.758 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:52.758 -07 000000547 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:48:52.768 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:48:52.768 -07 000000486 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:52.768 -07 000000486 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:48:52.768 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.172 mm/sec
17-03-17 19:48:53.718 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:53.718 -07 000000478 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:48:53.728 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:53.728 -07 000000486 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:53.748 -07 000000486 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:48:53.748 -07 000000486 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:48:53.748 -07 000000486 INF: Y Motor: Moved to 72.3501 after 1416 ms (table move)
17-03-17 19:48:53.748 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129471 mm (DAC = 28283)
17-03-17 19:48:53.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:53.748 -07 000000501 INF: FPGA: Recv ZSGSRD 29439
17-03-17 19:48:53.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:48:53.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:53.758 -07 000000478 INF: FPGA: Recv ZSGSRD 29442
17-03-17 19:48:53.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:53.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:53.768 -07 000000476 INF: FPGA: Recv ZSGSRD 29435
17-03-17 19:48:53.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:53.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:53.778 -07 000000569 INF: FPGA: Recv ZSGSRD 29446
17-03-17 19:48:53.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:53.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:53.788 -07 000000438 INF: FPGA: Recv ZSGSRD 29448
17-03-17 19:48:53.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:53.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:53.798 -07 000000618 INF: FPGA: Recv ZSGSRD 29440
17-03-17 19:48:53.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:53.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:53.808 -07 000000478 INF: FPGA: Recv ZSGSRD 29448
17-03-17 19:48:53.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:53.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:53.818 -07 000000424 INF: FPGA: Recv ZSGSRD 29440
17-03-17 19:48:53.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:53.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:53.828 -07 000000482 INF: FPGA: Recv ZSGSRD 29449
17-03-17 19:48:53.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:53.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:53.838 -07 000000626 INF: FPGA: Recv ZSGSRD 29442
17-03-17 19:48:53.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:53.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:53.848 -07 000000541 INF: FPGA: Recv ZPIEZORD 25108
17-03-17 19:48:53.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:53.858 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.316 V. Piezo Error = -9.5 V.
17-03-17 19:48:53.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29443 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29442 (-128.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29435 (-128.6 uncal um), Max = 29449 (-128.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:48:53.858 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29443, posNoise = 6, negNoise = 8
17-03-17 19:48:53.858 -07 000000610 INF: Z Motor: After move to -0.129471, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:53.858 -07 000000610 INF: Z Motor: Settle wait time = 1418 ms, measure time = 106 ms (allowed 150 ms), total time = 1524 ms
17-03-17 19:48:53.858 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:48:53.908 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 19:48:53.908 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:48:53.908 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.129471430101003. ----------
17-03-17 19:48:53.908 -07 000000610 INF: Cycle	30	Tile	16	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:48:53.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28107, sync = True, waitForSettling = True)
17-03-17 19:48:53.908 -07 000000610 INF: Z Motor: Moving to -0.128666 mm, started at -0.129471 mm, distance = 0.81 um
17-03-17 19:48:53.908 -07 000000610 INF: FPGA: Xmit ZDACW 28107\n [Z Motor]
17-03-17 19:48:53.908 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:48:53.918 -07 000000610 INF: FPGA: 'ZDACW 28107' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:48:53.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:53.918 -07 000000382 INF: FPGA: Recv ZDACR 28107
17-03-17 19:48:53.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:53.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:48:54.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:54.078 -07 000000618 INF: FPGA: Recv ZSGSRD 29320
17-03-17 19:48:54.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:54.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:54.088 -07 000000478 INF: FPGA: Recv ZSGSRD 29315
17-03-17 19:48:54.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:54.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:54.098 -07 000000593 INF: FPGA: Recv ZSGSRD 29319
17-03-17 19:48:54.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:54.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:54.108 -07 000000486 INF: FPGA: Recv ZSGSRD 29315
17-03-17 19:48:54.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:54.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:54.118 -07 000000561 INF: FPGA: Recv ZSGSRD 29319
17-03-17 19:48:54.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:54.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:54.128 -07 000000424 INF: FPGA: Recv ZSGSRD 29318
17-03-17 19:48:54.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:54.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:54.138 -07 000000541 INF: FPGA: Recv ZSGSRD 29318
17-03-17 19:48:54.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:54.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:54.148 -07 000000382 INF: FPGA: Recv ZSGSRD 29319
17-03-17 19:48:54.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:54.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:54.158 -07 000000476 INF: FPGA: Recv ZSGSRD 29320
17-03-17 19:48:54.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:54.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:54.168 -07 000000501 INF: FPGA: Recv ZSGSRD 29314
17-03-17 19:48:54.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:54.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:54.178 -07 000000438 INF: FPGA: Recv ZPIEZORD 24985
17-03-17 19:48:54.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:54.188 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.289 V. Piezo Error = -9.5 V.
17-03-17 19:48:54.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29318 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29318 (-127.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29314 (-127.9 uncal um), Max = 29320 (-127.9 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:48:54.188 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29318, posNoise = 2, negNoise = 4
17-03-17 19:48:54.188 -07 000000610 INF: Z Motor: After move to -0.128666, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:54.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:48:54.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:54.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:54.188 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:54.188 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:48:54.188 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:54.188 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:48:54.188 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:48:54.188 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:54.188 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:48:54.188 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:48:54.188 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:48:54.188 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:48:54.198 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:48:54.198 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:48:54.198 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:48:54.198 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:48:54.198 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:48:54.198 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:48:54.198 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:48:54.198 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:48:54.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 28283 150\n [Camera]
17-03-17 19:48:54.408 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:48:54.808 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:48:54.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:48:54.808 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:54.818 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:48:54.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:48:54.818 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:54.818 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:54.818 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) start.
17-03-17 19:48:54.818 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:54.818 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:48:54.998 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28283 790
17-03-17 19:48:55.148 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:48:55.188 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1055395888, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 19:48:55.188 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 19:48:55.188 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:55.188 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:48:55.188 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:48:55.188 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:55.198 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:48:55.198 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:48:55.198 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:48:55.208 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:48:55.348 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:48:55.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:48:55.348 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:55.348 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:55.348 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) start.
17-03-17 19:48:55.348 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:48:55.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:48:55.348 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:55.348 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:55.348 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1143115480, 0x0, 418435064) start.
17-03-17 19:48:55.368 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.008536,
17-03-17 19:48:55.538 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:48:55.538 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:48:55.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 28283 150' command took 2 ms to send, 1326 ms to get response, and 1334 ms overall
17-03-17 19:48:55.538 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.129270
17-03-17 19:48:55.538 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12927 mm
17-03-17 19:48:55.538 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:48:55.548 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:48:55.548 -07 000000476 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 19:48:55.548 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:55.548 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 28239, sync = True, waitForSettling = False)
17-03-17 19:48:55.548 -07 000000569 INF: Z Motor: Moving to -0.129270 mm, started at -0.128668 mm, distance = -0.60 um
17-03-17 19:48:55.548 -07 000000593 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:48:55.558 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:48:55.558 -07 000000476 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:55.558 -07 000000569 INF: FPGA: Xmit ZDACW 28239\n [Z Motor]
17-03-17 19:48:55.558 -07 000000476 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:48:55.558 -07 000000476 INF: Y Motor: Moving 1348 steps-26
17-03-17 19:48:55.558 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:48:55.568 -07 000000569 INF: FPGA: 'ZDACW 28239' command took 3 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:48:55.568 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:55.568 -07 000000618 INF: FPGA: Recv ZDACR 28239
17-03-17 19:48:55.578 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:48:55.578 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:55.578 -07 000000569 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-17 19:48:55.728 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:48:55.728 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:48:55.728 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:55.728 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1143115480, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:48:55.728 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:48:55.728 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:55.728 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:55.738 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:48:55.738 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:55.738 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:48:55.948 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 19:48:55.948 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 19:48:55.998 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:55.998 -07 000000547 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:48:56.008 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:48:56.008 -07 000000476 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:56.008 -07 000000476 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 19:48:56.008 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.843 mm, average velocity = 2.133 mm/sec
17-03-17 19:48:56.718 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:48:56.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:48:56.958 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:56.958 -07 000000482 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:48:56.968 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:56.968 -07 000000476 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:56.988 -07 000000476 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:48:56.988 -07 000000476 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:48:56.988 -07 000000476 INF: Y Motor: Moved to 73.1768 after 1440 ms (table move)
17-03-17 19:48:56.988 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129270 mm (DAC = 28239)
17-03-17 19:48:56.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:56.988 -07 000000462 INF: FPGA: Recv ZSGSRD 29405
17-03-17 19:48:56.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:48:56.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:56.998 -07 000000486 INF: FPGA: Recv ZSGSRD 29406
17-03-17 19:48:57.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:57.008 -07 000000561 INF: FPGA: Recv ZSGSRD 29415
17-03-17 19:48:57.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:57.018 -07 000000438 INF: FPGA: Recv ZSGSRD 29412
17-03-17 19:48:57.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:57.028 -07 000000569 INF: FPGA: Recv ZSGSRD 29415
17-03-17 19:48:57.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:57.038 -07 000000541 INF: FPGA: Recv ZSGSRD 29413
17-03-17 19:48:57.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:57.048 -07 000000547 INF: FPGA: Recv ZSGSRD 29421
17-03-17 19:48:57.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:57.058 -07 000000482 INF: FPGA: Recv ZSGSRD 29411
17-03-17 19:48:57.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:57.068 -07 000000431 INF: FPGA: Recv ZSGSRD 29403
17-03-17 19:48:57.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:57.078 -07 000000486 INF: FPGA: Recv ZSGSRD 29410
17-03-17 19:48:57.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:57.088 -07 000000462 INF: FPGA: Recv ZPIEZORD 25090
17-03-17 19:48:57.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.098 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.309 V. Piezo Error = -9.5 V.
17-03-17 19:48:57.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29411 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29412 (-128.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29403 (-128.4 uncal um), Max = 29421 (-128.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:48:57.098 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29411, posNoise = 10, negNoise = 8
17-03-17 19:48:57.098 -07 000000610 INF: Z Motor: After move to -0.129270, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:57.098 -07 000000610 INF: Z Motor: Settle wait time = 1442 ms, measure time = 106 ms (allowed 150 ms), total time = 1548 ms
17-03-17 19:48:57.098 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:48:57.148 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 19:48:57.148 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:48:57.148 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.129265855312467. ----------
17-03-17 19:48:57.148 -07 000000610 INF: Cycle	30	Tile	17	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:48:57.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28062, sync = True, waitForSettling = True)
17-03-17 19:48:57.148 -07 000000610 INF: Z Motor: Moving to -0.128460 mm, started at -0.129266 mm, distance = 0.81 um
17-03-17 19:48:57.148 -07 000000610 INF: FPGA: Xmit ZDACW 28062\n [Z Motor]
17-03-17 19:48:57.148 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 19:48:57.158 -07 000000610 INF: FPGA: 'ZDACW 28062' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:48:57.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:57.158 -07 000000569 INF: FPGA: Recv ZDACR 28062
17-03-17 19:48:57.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:48:57.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:57.318 -07 000000424 INF: FPGA: Recv ZSGSRD 29284
17-03-17 19:48:57.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:57.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:57.328 -07 000000618 INF: FPGA: Recv ZSGSRD 29284
17-03-17 19:48:57.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:57.338 -07 000000478 INF: FPGA: Recv ZSGSRD 29293
17-03-17 19:48:57.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:57.348 -07 000000482 INF: FPGA: Recv ZSGSRD 29292
17-03-17 19:48:57.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:57.358 -07 000000541 INF: FPGA: Recv ZSGSRD 29286
17-03-17 19:48:57.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:57.368 -07 000000382 INF: FPGA: Recv ZSGSRD 29287
17-03-17 19:48:57.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:57.378 -07 000000431 INF: FPGA: Recv ZSGSRD 29286
17-03-17 19:48:57.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:57.388 -07 000000478 INF: FPGA: Recv ZSGSRD 29281
17-03-17 19:48:57.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:57.398 -07 000000626 INF: FPGA: Recv ZSGSRD 29285
17-03-17 19:48:57.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:48:57.408 -07 000000541 INF: FPGA: Recv ZSGSRD 29286
17-03-17 19:48:57.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:48:57.418 -07 000000561 INF: FPGA: Recv ZPIEZORD 24982
17-03-17 19:48:57.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:48:57.428 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.282 V. Piezo Error = -9.5 V.
17-03-17 19:48:57.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29286 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29286 (-127.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29281 (-127.7 uncal um), Max = 29293 (-127.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:48:57.428 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29286, posNoise = 7, negNoise = 5
17-03-17 19:48:57.428 -07 000000610 INF: Z Motor: After move to -0.128460, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:48:57.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:48:57.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:48:57.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:48:57.428 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:48:57.428 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:48:57.428 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:48:57.428 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:48:57.428 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:48:57.428 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:48:57.428 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:48:57.428 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:48:57.428 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:48:57.428 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:48:57.438 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:48:57.438 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:48:57.438 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:48:57.438 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:48:57.448 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:48:57.448 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:48:57.448 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:48:57.448 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:48:57.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 28239 150\n [Camera]
17-03-17 19:48:57.648 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:48:58.058 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:48:58.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:48:58.058 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:58.058 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:58.058 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 19:48:58.058 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:48:58.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:48:58.058 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:58.058 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:58.058 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:48:58.248 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28239 790
17-03-17 19:48:58.398 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:48:58.458 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:48:58.458 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:48:58.458 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:58.458 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:58.458 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:48:58.458 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 19:48:58.458 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:48:58.458 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:58.468 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:58.468 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:48:58.598 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:48:58.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:48:58.598 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:48:58.598 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:48:58.598 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:48:58.598 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:48:58.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:48:58.598 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:48:58.598 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:48:58.608 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:48:58.788 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:48:58.788 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:48:58.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 28239 150' command took 2 ms to send, 1323 ms to get response, and 1334 ms overall
17-03-17 19:48:58.788 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.128906
17-03-17 19:48:58.788 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12891 mm
17-03-17 19:48:58.788 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:48:58.788 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:48:58.788 -07 000000547 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 19:48:58.788 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:58.788 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 28160, sync = True, waitForSettling = False)
17-03-17 19:48:58.788 -07 000000561 INF: Z Motor: Moving to -0.128908 mm, started at -0.128463 mm, distance = -0.45 um
17-03-17 19:48:58.798 -07 000000561 INF: FPGA: Xmit ZDACW 28160\n [Z Motor]
17-03-17 19:48:58.798 -07 000000618 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:48:58.798 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 19:48:58.798 -07 000000547 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:58.798 -07 000000547 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:48:58.798 -07 000000547 INF: Y Motor: Moving 1353 steps-32
17-03-17 19:48:58.798 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:48:58.808 -07 000000561 INF: FPGA: 'ZDACW 28160' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:48:58.808 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:48:58.818 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:48:58.818 -07 000000462 INF: FPGA: Recv ZDACR 28160
17-03-17 19:48:58.828 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:48:58.828 -07 000000561 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 19:48:58.978 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:48:58.978 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:48:58.978 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:58.978 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:58.978 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:48:58.978 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:48:58.978 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:48:58.978 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:48:58.988 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:48:58.998 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:48:59.178 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:48:59.178 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 19:48:59.208 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:48:59.218 -07 000000626 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:48:59.218 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:48:59.218 -07 000000547 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:48:59.218 -07 000000547 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:48:59.218 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.846 mm, average velocity = 2.203 mm/sec
17-03-17 19:49:00.168 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:49:00.168 -07 000000482 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:49:00.178 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:49:00.178 -07 000000547 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:49:00.188 -07 000000547 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:49:00.188 -07 000000547 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:49:00.188 -07 000000547 INF: Y Motor: Moved to 74.0088 after 1398 ms (table move)
17-03-17 19:49:00.188 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128908 mm (DAC = 28160)
17-03-17 19:49:00.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.198 -07 000000482 INF: FPGA: Recv ZSGSRD 29354
17-03-17 19:49:00.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 19:49:00.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.198 -07 000000551 INF: FPGA: Recv ZSGSRD 29352
17-03-17 19:49:00.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:49:00.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.208 -07 000000462 INF: FPGA: Recv ZSGSRD 29354
17-03-17 19:49:00.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.218 -07 000000476 INF: FPGA: Recv ZSGSRD 29358
17-03-17 19:49:00.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.228 -07 000000424 INF: FPGA: Recv ZSGSRD 29353
17-03-17 19:49:00.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.238 -07 000000486 INF: FPGA: Recv ZSGSRD 29369
17-03-17 19:49:00.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.248 -07 000000431 INF: FPGA: Recv ZSGSRD 29359
17-03-17 19:49:00.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.258 -07 000000382 INF: FPGA: Recv ZSGSRD 29358
17-03-17 19:49:00.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.268 -07 000000482 INF: FPGA: Recv ZSGSRD 29353
17-03-17 19:49:00.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.278 -07 000000424 INF: FPGA: Recv ZSGSRD 29350
17-03-17 19:49:00.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:49:00.288 -07 000000478 INF: FPGA: Recv ZPIEZORD 25107
17-03-17 19:49:00.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.298 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.297 V. Piezo Error = -9.3 V.
17-03-17 19:49:00.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29356 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29354 (-128.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29350 (-128.1 uncal um), Max = 29369 (-128.2 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:49:00.298 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29356, posNoise = 13, negNoise = 6
17-03-17 19:49:00.298 -07 000000610 INF: Z Motor: After move to -0.128908, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:49:00.298 -07 000000610 INF: Z Motor: Settle wait time = 1400 ms, measure time = 101 ms (allowed 150 ms), total time = 1501 ms
17-03-17 19:49:00.298 -07 000000610 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 19:49:00.348 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1554 ms
17-03-17 19:49:00.348 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:49:00.348 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.12891252364467. ----------
17-03-17 19:49:00.348 -07 000000610 INF: Cycle	30	Tile	18	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:49:00.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27983, sync = True, waitForSettling = True)
17-03-17 19:49:00.348 -07 000000610 INF: Z Motor: Moving to -0.128098 mm, started at -0.128913 mm, distance = 0.81 um
17-03-17 19:49:00.348 -07 000000610 INF: FPGA: Xmit ZDACW 27983\n [Z Motor]
17-03-17 19:49:00.348 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:49:00.358 -07 000000610 INF: FPGA: 'ZDACW 27983' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:49:00.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:49:00.358 -07 000000593 INF: FPGA: Recv ZDACR 27983
17-03-17 19:49:00.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:49:00.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.518 -07 000000462 INF: FPGA: Recv ZSGSRD 29228
17-03-17 19:49:00.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:49:00.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.528 -07 000000382 INF: FPGA: Recv ZSGSRD 29232
17-03-17 19:49:00.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.538 -07 000000431 INF: FPGA: Recv ZSGSRD 29227
17-03-17 19:49:00.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.548 -07 000000486 INF: FPGA: Recv ZSGSRD 29233
17-03-17 19:49:00.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.558 -07 000000593 INF: FPGA: Recv ZSGSRD 29235
17-03-17 19:49:00.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.568 -07 000000561 INF: FPGA: Recv ZSGSRD 29234
17-03-17 19:49:00.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.578 -07 000000382 INF: FPGA: Recv ZSGSRD 29228
17-03-17 19:49:00.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.588 -07 000000618 INF: FPGA: Recv ZSGSRD 29224
17-03-17 19:49:00.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.598 -07 000000438 INF: FPGA: Recv ZSGSRD 29231
17-03-17 19:49:00.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:00.608 -07 000000569 INF: FPGA: Recv ZSGSRD 29229
17-03-17 19:49:00.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:49:00.618 -07 000000561 INF: FPGA: Recv ZPIEZORD 24900
17-03-17 19:49:00.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:00.628 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.270 V. Piezo Error = -9.5 V.
17-03-17 19:49:00.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29230 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29230 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29224 (-127.3 uncal um), Max = 29235 (-127.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:49:00.628 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29230, posNoise = 5, negNoise = 6
17-03-17 19:49:00.628 -07 000000610 INF: Z Motor: After move to -0.128098, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:49:00.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:49:00.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:49:00.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:49:00.628 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:49:00.628 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:49:00.628 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:49:00.628 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:49:00.628 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:49:00.628 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:49:00.628 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:49:00.628 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:49:00.628 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:49:00.628 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:49:00.638 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:49:00.638 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:49:00.638 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:49:00.638 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:49:00.648 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:49:00.648 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:49:00.648 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:49:00.648 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:49:00.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 28160 150\n [Camera]
17-03-17 19:49:00.728 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 4.003063,
17-03-17 19:49:00.848 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:49:01.258 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:49:01.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:49:01.258 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:49:01.258 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:49:01.258 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:49:01.258 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:49:01.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:49:01.258 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:49:01.388 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:49:01.388 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:49:01.448 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28160 790
17-03-17 19:49:01.598 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:49:01.648 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:49:01.648 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:49:01.648 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:49:01.648 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:49:01.648 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:49:01.718 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:49:01.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 29. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=12, R2=11, Total=23. Bubbles this run: R1=398, R2=421, Total=819. Warn if over 250 bubbles per interval.
17-03-17 19:49:01.758 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 19:49:01.758 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:49:01.758 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:49:01.768 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:49:01.768 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 19:49:01.798 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:49:01.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:49:01.798 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:49:01.798 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:49:01.798 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 19:49:01.798 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:49:01.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:49:01.798 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:49:01.798 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:49:01.798 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) start.
17-03-17 19:49:01.988 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:49:01.988 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:49:01.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 28160 150' command took 2 ms to send, 1324 ms to get response, and 1334 ms overall
17-03-17 19:49:01.988 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:49:01.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.128103072914808. ------
17-03-17 19:49:02.008 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:49:02.008 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13448 mm
17-03-17 19:49:02.008 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:49:02.008 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:49:02.008 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:49:02.008 -07 000000486 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 19:49:02.008 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29378, sync = True, waitForSettling = False)
17-03-17 19:49:02.008 -07 000000478 INF: Z Motor: Moving to -0.134484 mm, started at -0.128103 mm, distance = -6.38 um
17-03-17 19:49:02.018 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:02.018 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:49:02.018 -07 000000593 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:49:02.028 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:49:02.028 -07 000000486 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:49:02.028 -07 000000486 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:49:02.028 -07 000000486 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:49:02.028 -07 000000478 INF: FPGA: Xmit ZDACW 29378\n [Z Motor]
17-03-17 19:49:02.028 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:49:02.038 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:49:02.038 -07 000000478 INF: FPGA: 'ZDACW 29378' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 19:49:02.048 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:49:02.058 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:49:02.058 -07 000000429 INF: FPGA: Recv ZDACR 29378
17-03-17 19:49:02.068 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:49:02.068 -07 000000478 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 19:49:02.178 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1107693216, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:49:02.178 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:49:02.178 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:49:02.178 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:49:02.178 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:49:02.178 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:49:02.178 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:49:02.188 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:49:02.188 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:49:02.188 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:49:02.238 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:49:02.238 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:49:02.418 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:49:02.418 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 19:49:02.448 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:49:02.448 -07 000000551 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:49:02.458 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:02.458 -07 000000486 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:49:02.458 -07 000000486 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 19:49:02.458 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.844 mm, average velocity = 2.131 mm/sec
17-03-17 19:49:03.408 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:49:03.408 -07 000000551 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:49:03.418 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:03.418 -07 000000486 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:49:03.428 -07 000000486 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:49:03.428 -07 000000486 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:49:03.428 -07 000000486 INF: Y Motor: Moved to 74.8330 after 1417 ms (table move)
17-03-17 19:49:03.428 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134484 mm (DAC = 29378)
17-03-17 19:49:03.438 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:03.438 -07 000000569 INF: FPGA: Recv ZSGSRD 30228
17-03-17 19:49:03.448 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:49:03.448 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:03.448 -07 000000476 INF: FPGA: Recv ZSGSRD 30228
17-03-17 19:49:03.458 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:03.458 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:03.458 -07 000000482 INF: FPGA: Recv ZSGSRD 30211
17-03-17 19:49:03.468 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:03.468 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:03.468 -07 000000541 INF: FPGA: Recv ZSGSRD 30224
17-03-17 19:49:03.478 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:03.478 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:03.478 -07 000000478 INF: FPGA: Recv ZSGSRD 30223
17-03-17 19:49:03.488 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:03.488 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:03.488 -07 000000431 INF: FPGA: Recv ZSGSRD 30224
17-03-17 19:49:03.498 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:03.498 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:03.498 -07 000000424 INF: FPGA: Recv ZSGSRD 30213
17-03-17 19:49:03.508 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:03.508 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:03.508 -07 000000618 INF: FPGA: Recv ZSGSRD 30222
17-03-17 19:49:03.518 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:03.518 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:03.518 -07 000000482 INF: FPGA: Recv ZSGSRD 30231
17-03-17 19:49:03.528 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:03.528 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:03.528 -07 000000626 INF: FPGA: Recv ZSGSRD 30222
17-03-17 19:49:03.538 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:03.538 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:49:03.538 -07 000000551 INF: FPGA: Recv ZPIEZORD 26256
17-03-17 19:49:03.548 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:03.548 -07 000000561 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.483 V. Piezo Error = -8.7 V.
17-03-17 19:49:03.548 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30223 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30224 (-133.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30211 (-133.6 uncal um), Max = 30231 (-133.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 19:49:03.548 -07 000000561 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30223, posNoise = 8, negNoise = 12
17-03-17 19:49:03.548 -07 000000561 INF: Z Motor: After move to -0.134484, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:49:03.548 -07 000000561 INF: Z Motor: Settle wait time = 1421 ms, measure time = 111 ms (allowed 150 ms), total time = 1532 ms
17-03-17 19:49:03.548 -07 000000561 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 19:49:03.588 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 19:49:03.588 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:49:03.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:49:03.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:49:03.588 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:49:03.588 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:49:03.588 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:49:03.588 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:49:03.588 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:49:03.588 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:49:03.598 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:49:03.598 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:49:03.608 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:49:03.608 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:49:03.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:49:03.658 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:49:03.858 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:49:03.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:49:03.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:49:03.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:49:03.898 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:49:03.898 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:49:03.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 287 ms overall
17-03-17 19:49:03.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:49:03.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:49:03.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:49:03.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:49:03.998 -07 000000482 INF: Autofocus start
17-03-17 19:49:03.998 -07 000000482 INF: MeasureProfile start
17-03-17 19:49:03.998 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:49:03.998 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:49:04.008 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:49:04.008 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:49:04.008 -07 000000482 INF: MeasureProfile done
17-03-17 19:49:04.008 -07 000000482 INF: X=2  Z correction [um]=-0.01432754
17-03-17 19:49:04.008 -07 000000482 INF: Autofocus finished
17-03-17 19:49:04.208 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:49:04.208 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:49:04.208 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.134482315571576. ----------
17-03-17 19:49:04.208 -07 000000610 INF: Cycle	30	Tile	19	Exposure Settings		A	405	G	195	T	195	C	405
17-03-17 19:49:04.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27888, sync = True, waitForSettling = True)
17-03-17 19:49:04.218 -07 000000610 INF: Z Motor: Moving to -0.127663 mm, started at -0.134482 mm, distance = 6.82 um
17-03-17 19:49:04.218 -07 000000610 INF: FPGA: Xmit ZDACW 27888\n [Z Motor]
17-03-17 19:49:04.218 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 19:49:04.228 -07 000000610 INF: FPGA: 'ZDACW 27888' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:49:04.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:49:04.228 -07 000000501 INF: FPGA: Recv ZDACR 27888
17-03-17 19:49:04.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:04.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:49:04.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:04.388 -07 000000551 INF: FPGA: Recv ZSGSRD 29162
17-03-17 19:49:04.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:04.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:04.398 -07 000000476 INF: FPGA: Recv ZSGSRD 29162
17-03-17 19:49:04.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:04.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:04.408 -07 000000482 INF: FPGA: Recv ZSGSRD 29157
17-03-17 19:49:04.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:04.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:04.418 -07 000000382 INF: FPGA: Recv ZSGSRD 29161
17-03-17 19:49:04.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:04.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:04.428 -07 000000626 INF: FPGA: Recv ZSGSRD 29165
17-03-17 19:49:04.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:04.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:04.438 -07 000000478 INF: FPGA: Recv ZSGSRD 29165
17-03-17 19:49:04.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:04.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:04.448 -07 000000618 INF: FPGA: Recv ZSGSRD 29161
17-03-17 19:49:04.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:04.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:04.458 -07 000000541 INF: FPGA: Recv ZSGSRD 29158
17-03-17 19:49:04.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:04.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:04.468 -07 000000547 INF: FPGA: Recv ZSGSRD 29161
17-03-17 19:49:04.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:04.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:49:04.478 -07 000000569 INF: FPGA: Recv ZSGSRD 29168
17-03-17 19:49:04.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:04.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:49:04.488 -07 000000478 INF: FPGA: Recv ZPIEZORD 24834
17-03-17 19:49:04.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:49:04.498 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.255 V. Piezo Error = -9.5 V.
17-03-17 19:49:04.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29162 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29162 (-126.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29157 (-126.9 uncal um), Max = 29168 (-126.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:49:04.498 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29162, posNoise = 6, negNoise = 5
17-03-17 19:49:04.498 -07 000000610 INF: Z Motor: After move to -0.127663, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:49:04.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:49:04.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:49:04.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:49:04.498 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:49:04.498 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:49:04.498 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:49:04.498 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:49:04.498 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:49:04.498 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:49:04.498 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:49:04.498 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:49:04.498 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:49:04.498 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:49:04.508 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:49:04.508 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:49:04.508 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:49:04.508 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:49:04.518 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 19:49:04.518 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:49:04.518 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 19:49:04.518 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:49:04.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 405 405 195 195 28064 150\n [Camera]
17-03-17 19:49:04.718 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:49:05.128 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 597
17-03-17 19:49:05.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 597
17-03-17 19:49:05.128 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:49:05.128 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:49:05.128 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1147520784, 0x0, 391868352) start.
17-03-17 19:49:05.128 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 597
17-03-17 19:49:05.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 597
17-03-17 19:49:05.128 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:49:05.248 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:49:05.248 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) start.
17-03-17 19:49:05.318 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28064 790
17-03-17 19:49:05.468 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 940
17-03-17 19:49:05.508 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1147520784, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:49:05.508 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:49:05.508 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:49:05.508 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:49:05.508 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:49:05.618 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1055395888, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 19:49:05.618 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:49:05.618 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:49:05.628 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 19:49:05.628 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-17 19:49:05.668 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1135
17-03-17 19:49:05.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1135
17-03-17 19:49:05.668 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:49:05.668 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1135
17-03-17 19:49:05.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1135
17-03-17 19:49:05.668 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:49:05.668 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:49:05.668 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 19:49:05.678 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:49:05.678 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) start.
17-03-17 19:49:05.858 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1327
17-03-17 19:49:05.858 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:49:05.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 405 405 195 195 28064 150' command took 2 ms to send, 1322 ms to get response, and 1334 ms overall
17-03-17 19:49:06.038 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:49:06.038 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:49:06.038 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:49:06.048 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:49:06.048 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1107693216, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:49:06.048 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:49:06.048 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:49:06.048 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:49:06.058 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:49:06.058 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:49:06.058 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:49:06.088 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.990831,
17-03-17 19:49:06.098 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-17 19:49:06.098 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:49:06.138 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 19:49:06.148 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 19:49:06.148 -07 000000610 INF: Imaging Cycle 30: ScanTilesCommand Cycle 30 time end. Duration was 139955 ms.
17-03-17 19:49:06.148 -07 000000610 INF: =================== Cycle #30 ===================
17-03-17 19:49:06.148 -07 000000610 INF: ===================  ===================
17-03-17 19:49:06.148 -07 000000429 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:49:06.158 -07 000000382 INF: FPGA: Recv EXLED1ADCR 27
17-03-17 19:49:06.158 -07 000000429 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:49:06.158 -07 000000429 INF: GreenLED: Using Green data: Photodiode ADC 27 --> 0.0 mW (old method), or 2.0 mW (new method). Difference = 2.0 mW
17-03-17 19:49:06.158 -07 000000429 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 30, FrontChillerTemperature: 3.990831, FrontChillerHeatSinkTemperature: 0.366539, AmbientTemperature: 18.96388, FlowCellCompartmentTemperature: 21.99544, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.92804, GreenLEDSensorTemperature: 25.63422, PhotodiodePowerAdcGreen: 27, PhotodiodePowerMwGreen: 2.018235
17-03-17 19:49:06.178 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.